Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524230 | XP_024635160.1 | 93.961 | 563 | 22 | 7 | 20 | 575 | 2 | 559 | 0.0 | 1061 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524230 | sp|Q680B7|XYN4_ARATH | 35.622 | 539 | 317 | 12 | 54 | 571 | 32 | 561 | 6.02e-101 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524230 | A0A396J1W7 | 93.961 | 563 | 22 | 7 | 20 | 575 | 2 | 559 | 0.0 | 1061 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032120 | Msa0524230 | 0.802077 | 6.657872e-49 | -8.615850e-47 |
| Msa0032400 | Msa0524230 | 0.803401 | 3.548674e-49 | -8.615850e-47 |
| Msa0041540 | Msa0524230 | 0.807659 | 4.536892e-50 | -8.615850e-47 |
| Msa0050580 | Msa0524230 | 0.819414 | 1.176318e-52 | -8.615850e-47 |
| Msa0053110 | Msa0524230 | 0.813640 | 2.310123e-51 | -8.615850e-47 |
| Msa0139900 | Msa0524230 | 0.810875 | 9.272700e-51 | -8.615850e-47 |
| Msa0185700 | Msa0524230 | 0.814278 | 1.671347e-51 | -8.615850e-47 |
| Msa0386270 | Msa0524230 | 0.823521 | 1.324205e-53 | -8.615850e-47 |
| Msa0436090 | Msa0524230 | 0.821507 | 3.891545e-53 | -8.615850e-47 |
| Msa0436460 | Msa0524230 | 0.800603 | 1.334071e-48 | -8.615850e-47 |
| Msa0246690 | Msa0524230 | 0.803380 | 3.583604e-49 | -8.615850e-47 |
| Msa0327550 | Msa0524230 | 0.800353 | 1.499655e-48 | -8.615850e-47 |
| Msa0506760 | Msa0524230 | 0.819973 | 8.765923e-53 | -8.615850e-47 |
| Msa0524230 | Msa0532840 | 0.822929 | 1.821017e-53 | -8.615850e-47 |
| Msa0524230 | Msa0533010 | 0.817374 | 3.408328e-52 | -8.615850e-47 |
| Msa0524230 | Msa0538570 | 0.809713 | 1.651730e-50 | -8.615850e-47 |
| Msa0524230 | Msa0546840 | 0.817462 | 3.256053e-52 | -8.615850e-47 |
| Msa0524230 | Msa0594390 | 0.809062 | 2.278494e-50 | -8.615850e-47 |
| Msa0524230 | Msa0607600 | -0.812896 | 3.365787e-51 | -8.615850e-47 |
| Msa0524230 | Msa0639370 | 0.817542 | 3.124721e-52 | -8.615850e-47 |
| Msa0524230 | Msa0661470 | 0.821558 | 3.788633e-53 | -8.615850e-47 |
| Msa0524230 | Msa0667970 | 0.805495 | 1.298381e-49 | -8.615850e-47 |
| Msa0524230 | Msa0687860 | -0.816135 | 6.464639e-52 | -8.615850e-47 |
| Msa0524230 | Msa0725920 | 0.808625 | 2.825729e-50 | -8.615850e-47 |
| Msa0524230 | Msa0766470 | 0.804068 | 2.579110e-49 | -8.615850e-47 |
| Msa0524230 | Msa0931480 | 0.808909 | 2.456954e-50 | -8.615850e-47 |
| Msa0524230 | Msa0937550 | 0.811362 | 7.270899e-51 | -8.615850e-47 |
| Msa0524230 | Msa1004500 | 0.806705 | 7.225961e-50 | -8.615850e-47 |
| Msa0524230 | Msa1004520 | 0.801478 | 8.836715e-49 | -8.615850e-47 |
| Msa0524230 | Msa1014270 | 0.803015 | 4.263923e-49 | -8.615850e-47 |
| Msa0524230 | Msa1018790 | 0.820403 | 6.986552e-53 | -8.615850e-47 |
| Msa0524230 | Msa1129560 | 0.802173 | 6.360083e-49 | -8.615850e-47 |
| Msa0524230 | Msa1134400 | 0.812574 | 3.958217e-51 | -8.615850e-47 |
| Msa0524230 | Msa1147270 | 0.801906 | 7.218733e-49 | -8.615850e-47 |
| Msa0524230 | Msa1197110 | 0.820564 | 6.418604e-53 | -8.615850e-47 |
| Msa0524230 | Msa1229700 | 0.805078 | 1.587763e-49 | -8.615850e-47 |
| Msa0524230 | Msa1315980 | 0.808821 | 2.565873e-50 | -8.615850e-47 |
| Msa0524230 | Msa1365000 | 0.959062 | 4.968086e-117 | -8.615850e-47 |
| Msa0524230 | Msa1365870 | 0.813739 | 2.197773e-51 | -8.615850e-47 |
| Msa0524230 | Msa1367430 | 0.983549 | 4.781511e-158 | -8.615850e-47 |
| Msa0524230 | Msa1379990 | 0.805195 | 1.500588e-49 | -8.615850e-47 |
| Msa0524230 | Msa1382310 | 0.807439 | 5.051707e-50 | -8.615850e-47 |
| Msa0524230 | Msa1398480 | 0.820750 | 5.815202e-53 | -8.615850e-47 |
| Msa0524230 | Msa1417630 | 0.931937 | 1.801712e-94 | -8.615850e-47 |
| Msa0524230 | Msa1435580 | 0.982408 | 5.148929e-155 | -8.615850e-47 |
| Msa0524230 | Msa1438360 | 0.819376 | 1.200117e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524230 | MtrunA17_Chr3g0145541 | 93.961 | 563 | 22 | 7 | 20 | 575 | 2 | 559 | 0.0 | 1061 |
| Msa0524230 | MtrunA17_Chr5g0421191 | 39.241 | 553 | 291 | 9 | 33 | 554 | 4 | 542 | 1.39e-131 | 396 |
| Msa0524230 | MtrunA17_Chr4g0037551 | 39.587 | 533 | 277 | 11 | 61 | 562 | 32 | 550 | 2.22e-128 | 388 |
| Msa0524230 | MtrunA17_Chr7g0223191 | 38.964 | 521 | 276 | 8 | 62 | 551 | 4 | 513 | 5.78e-127 | 383 |
| Msa0524230 | MtrunA17_Chr1g0207241 | 38.910 | 532 | 281 | 11 | 35 | 534 | 23 | 542 | 9.35e-116 | 356 |
| Msa0524230 | MtrunA17_Chr1g0207201 | 39.294 | 453 | 261 | 6 | 105 | 551 | 2 | 446 | 4.99e-111 | 340 |
| Msa0524230 | MtrunA17_Chr1g0207211 | 36.911 | 531 | 295 | 11 | 54 | 551 | 31 | 554 | 5.63e-111 | 343 |
| Msa0524230 | MtrunA17_Chr1g0207231 | 37.526 | 477 | 280 | 7 | 105 | 571 | 2 | 470 | 1.00e-109 | 336 |
| Msa0524230 | MtrunA17_Chr3g0135341 | 33.714 | 525 | 308 | 14 | 66 | 575 | 241 | 740 | 5.52e-77 | 258 |
| Msa0524230 | MtrunA17_Chr1g0151951 | 32.079 | 505 | 322 | 9 | 80 | 575 | 438 | 930 | 7.69e-76 | 258 |
| Msa0524230 | MtrunA17_Chr4g0068081 | 31.088 | 193 | 99 | 4 | 331 | 523 | 1 | 159 | 6.29e-22 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524230 | AT4G38650.1 | 65.434 | 541 | 180 | 3 | 42 | 575 | 22 | 562 | 0.0 | 755 |
| Msa0524230 | AT4G38300.1 | 71.483 | 263 | 64 | 2 | 204 | 465 | 12 | 264 | 1.08e-137 | 401 |
| Msa0524230 | AT4G33840.1 | 37.163 | 557 | 305 | 9 | 54 | 575 | 25 | 571 | 1.65e-131 | 396 |
| Msa0524230 | AT4G33830.1 | 38.768 | 552 | 292 | 11 | 54 | 570 | 26 | 566 | 3.10e-129 | 390 |
| Msa0524230 | AT4G33860.1 | 39.130 | 529 | 283 | 10 | 54 | 551 | 25 | 545 | 1.69e-127 | 386 |
| Msa0524230 | AT2G14690.1 | 35.622 | 539 | 317 | 12 | 54 | 571 | 32 | 561 | 6.12e-102 | 320 |
| Msa0524230 | AT4G33810.1 | 36.674 | 469 | 280 | 10 | 105 | 562 | 49 | 511 | 5.09e-100 | 313 |
| Msa0524230 | AT4G33810.5 | 36.674 | 469 | 280 | 10 | 105 | 562 | 49 | 511 | 5.09e-100 | 313 |
| Msa0524230 | AT4G33810.2 | 36.674 | 469 | 280 | 10 | 105 | 562 | 89 | 551 | 1.81e-99 | 313 |
| Msa0524230 | AT4G33810.3 | 36.674 | 469 | 280 | 10 | 105 | 562 | 89 | 551 | 1.81e-99 | 313 |
| Msa0524230 | AT4G33810.4 | 36.674 | 469 | 280 | 10 | 105 | 562 | 89 | 551 | 1.81e-99 | 313 |
| Msa0524230 | AT4G33820.1 | 37.063 | 429 | 258 | 7 | 105 | 527 | 89 | 511 | 5.38e-93 | 296 |
| Msa0524230 | AT1G58370.1 | 32.016 | 506 | 322 | 10 | 80 | 575 | 421 | 914 | 3.81e-78 | 265 |
| Msa0524230 | AT1G58370.2 | 32.016 | 506 | 322 | 10 | 80 | 575 | 449 | 942 | 6.33e-78 | 265 |
| Msa0524230 | AT1G10050.2 | 33.543 | 477 | 301 | 10 | 106 | 575 | 596 | 1063 | 1.11e-73 | 254 |
| Msa0524230 | AT1G10050.1 | 33.543 | 477 | 301 | 10 | 106 | 575 | 596 | 1063 | 1.11e-73 | 254 |
| Msa0524230 | AT1G10050.3 | 33.543 | 477 | 301 | 10 | 106 | 575 | 628 | 1095 | 1.14e-73 | 255 |
| Msa0524230 | AT4G08160.1 | 31.335 | 517 | 323 | 11 | 66 | 566 | 240 | 740 | 5.50e-69 | 237 |
| Msa0524230 | AT4G08160.2 | 33.489 | 427 | 266 | 8 | 66 | 483 | 240 | 657 | 1.62e-62 | 218 |
Find 140 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGGAGAATATAGAATT+AGG | 0.197889 | 3_4:+77743936 | Msa0524230:CDS |
| TTATTTGTAGGCAATTTATT+TGG | 0.199684 | 3_4:+77743697 | Msa0524230:intron |
| ACCCATGCAGGATTGTATTT+AGG | 0.215174 | 3_4:-77743115 | None:intergenic |
| GTACTACGTTTGAAAGTTAA+TGG | 0.228244 | 3_4:-77741639 | None:intergenic |
| GGGGTTTCTTCTTCTTTCTA+TGG | 0.261359 | 3_4:+77741841 | Msa0524230:CDS |
| CCCATGCAGGATTGTATTTA+GGG | 0.265487 | 3_4:-77743114 | None:intergenic |
| TCTTTGAAAACGAGCTTAAA+TGG | 0.282741 | 3_4:+77742978 | Msa0524230:CDS |
| GCATGGGTTCTTAACCTTAC+AGG | 0.285919 | 3_4:+77743130 | Msa0524230:CDS |
| CTCCATTGGTGGTGAGTAAA+TGG | 0.299076 | 3_4:-77742675 | None:intergenic |
| CTCTAACAAATTGCATCATT+TGG | 0.305368 | 3_4:-77743048 | None:intergenic |
| CCTTGTAATTTCCTTCCATT+AGG | 0.307008 | 3_4:-77742836 | None:intergenic |
| TTCACAAACCAATTCTGATA+TGG | 0.315882 | 3_4:-77742938 | None:intergenic |
| AAGAGCTATCCTAGACAAAT+TGG | 0.323111 | 3_4:+77743495 | Msa0524230:CDS |
| TGTAAGCAGTAGAGTCATAT+AGG | 0.332357 | 3_4:-77741948 | None:intergenic |
| GCGATAGCAAAGACCATTCT+TGG | 0.334413 | 3_4:+77742908 | Msa0524230:CDS |
| CTTGTAATTTCCTTCCATTA+GGG | 0.341062 | 3_4:-77742835 | None:intergenic |
| CATTGTCTGTGAGGCACATT+TGG | 0.350045 | 3_4:-77743802 | None:intergenic |
| ATATCAAAAGACTTTCCTAT+TGG | 0.362210 | 3_4:+77742881 | Msa0524230:CDS |
| TTACATGAGCAGTTAAATAA+AGG | 0.364013 | 3_4:+77744142 | Msa0524230:three_prime_UTR |
| GCAACATACCATATCAGAAT+TGG | 0.364428 | 3_4:+77742930 | Msa0524230:CDS |
| GTAAGCAGTAGAGTCATATA+GGG | 0.368725 | 3_4:-77741947 | None:intergenic |
| GCTCTTATAAGTGGAAGATT+TGG | 0.368945 | 3_4:-77743478 | None:intergenic |
| CCACCGTAAAGTGGCTTCTC+TGG | 0.371358 | 3_4:-77742107 | None:intergenic |
| ATGAGACATATAACTGTATT+GGG | 0.377080 | 3_4:+77742508 | Msa0524230:CDS |
| TACAGATTCAGTTATGATAA+AGG | 0.377300 | 3_4:+77742467 | Msa0524230:CDS |
| TACTACGTTTGAAAGTTAAT+GGG | 0.377977 | 3_4:-77741638 | None:intergenic |
| TGGACAGCACTTCATCCATA+TGG | 0.380084 | 3_4:+77743773 | Msa0524230:CDS |
| AGTCACAGTCACGTGAGATT+TGG | 0.382876 | 3_4:+77741500 | Msa0524230:five_prime_UTR |
| CGTTTGAAAGTTAATGGGAT+TGG | 0.383246 | 3_4:-77741633 | None:intergenic |
| AATGAGACATATAACTGTAT+TGG | 0.393839 | 3_4:+77742507 | Msa0524230:CDS |
| CATCCAGAGAAGCCACTTTA+CGG | 0.403538 | 3_4:+77742104 | Msa0524230:CDS |
| CTTAGGAGAATATAGAATTA+GGG | 0.404134 | 3_4:+77743937 | Msa0524230:CDS |
| ACAGGGGACCAGTGAGGAAT+AGG | 0.404498 | 3_4:-77741579 | None:intergenic |
| AGGTTCTAGTGAAGAAGTTA+AGG | 0.410579 | 3_4:-77744069 | None:intergenic |
| ATCAGAATTGGTTTGTGAAA+CGG | 0.414114 | 3_4:+77742942 | Msa0524230:CDS |
| TGGCAAACTGGTCGTGTAGA+AGG | 0.419661 | 3_4:+77743875 | Msa0524230:CDS |
| CTTCTTCAAGAGTGGCAAAC+TGG | 0.421800 | 3_4:+77743863 | Msa0524230:CDS |
| GAAAGTTAATGGGATTGGAT+TGG | 0.422337 | 3_4:-77741628 | None:intergenic |
| CAGTGAATGGGATAATGCTT+TGG | 0.423472 | 3_4:+77743753 | Msa0524230:CDS |
| TGAACTAAGTGATGTTAATC+TGG | 0.429828 | 3_4:+77741457 | None:intergenic |
| TTCTCACACCCTTCAGTGAA+TGG | 0.434692 | 3_4:+77743740 | Msa0524230:CDS |
| ATATCACAAGGGAACAGAAC+AGG | 0.434939 | 3_4:-77741597 | None:intergenic |
| GTTACAATTCTCCTTGAGAA+AGG | 0.439341 | 3_4:-77744089 | None:intergenic |
| CACATTTGGTAGCACCCATA+TGG | 0.442952 | 3_4:-77743788 | None:intergenic |
| CAACACTAGATCTTCCCGTT+TGG | 0.443376 | 3_4:+77743518 | Msa0524230:CDS |
| ATAAGAGAACTAAGACAATA+TGG | 0.448976 | 3_4:+77743412 | Msa0524230:CDS |
| AGTTAATGGGATTGGATTGG+AGG | 0.453082 | 3_4:-77741625 | None:intergenic |
| TGCTACATTTCATTTCTTTG+AGG | 0.453293 | 3_4:+77743285 | Msa0524230:CDS |
| AAGAAATGAAATGTAGCATT+GGG | 0.454110 | 3_4:-77743280 | None:intergenic |
| TTCTTCACATGCTACAATAT+AGG | 0.454734 | 3_4:-77741544 | None:intergenic |
| CAGTGTTGATGATATATTGT+TGG | 0.461856 | 3_4:-77742704 | None:intergenic |
| ATCAATCTCAGTAAGCCAAA+CGG | 0.466197 | 3_4:-77743533 | None:intergenic |
| ATCTTAACTGTGTACCTGTA+AGG | 0.467889 | 3_4:-77743144 | None:intergenic |
| TCAATCTCAGTAAGCCAAAC+GGG | 0.472110 | 3_4:-77743532 | None:intergenic |
| CTGTCTCTATCAACTCTGAT+TGG | 0.479768 | 3_4:+77744117 | Msa0524230:three_prime_UTR |
| AAAGAAATGAAATGTAGCAT+TGG | 0.480004 | 3_4:-77743281 | None:intergenic |
| CAAAACAGAATTCATACATT+GGG | 0.480784 | 3_4:+77743207 | Msa0524230:CDS |
| GATTTCTACGAACAAAGGCT+TGG | 0.482875 | 3_4:+77743256 | Msa0524230:CDS |
| CCACTTTACGGTGGAGGAGG+AGG | 0.484097 | 3_4:+77742116 | Msa0524230:CDS |
| GTTCATGTATCAGACCCTAA+TGG | 0.488462 | 3_4:+77742821 | Msa0524230:CDS |
| TTTGCTATCGCAGAGCCAAT+AGG | 0.489645 | 3_4:-77742896 | None:intergenic |
| TTTATTTGGAACAAGTATTG+AGG | 0.493659 | 3_4:+77743711 | Msa0524230:CDS |
| AAATGACCAACATCCACGTT+TGG | 0.493661 | 3_4:-77742541 | None:intergenic |
| GAAGTAGGTTGCATCATCCT+TGG | 0.493827 | 3_4:-77741766 | None:intergenic |
| AAATTAAGTCACAGTGTCAC+AGG | 0.494605 | 3_4:-77744028 | None:intergenic |
| GGACAGCACTTCATCCATAT+GGG | 0.495243 | 3_4:+77743774 | Msa0524230:CDS |
| TCTAGGATAGCTCTTATAAG+TGG | 0.496749 | 3_4:-77743487 | None:intergenic |
| GATTTCAACAACTTACCATC+AGG | 0.497916 | 3_4:+77743824 | Msa0524230:CDS |
| AAGCCACTTTACGGTGGAGG+AGG | 0.499159 | 3_4:+77742113 | Msa0524230:CDS |
| TTCATAAACAAAGTTGCTAA+AGG | 0.499339 | 3_4:-77743325 | None:intergenic |
| TCTTCTAGTTATAATACCGA+TGG | 0.501758 | 3_4:+77741819 | Msa0524230:CDS |
| GTTGGTTGATTCTCCATTGG+TGG | 0.504409 | 3_4:-77742686 | None:intergenic |
| CCTCCTCCTCCACCGTAAAG+TGG | 0.507893 | 3_4:-77742116 | None:intergenic |
| ATTGTTGGTTGATTCTCCAT+TGG | 0.513327 | 3_4:-77742689 | None:intergenic |
| TGTTGGTCATTTCTCAAAGG+TGG | 0.513377 | 3_4:+77742552 | Msa0524230:CDS |
| TCTCACACCCTTCAGTGAAT+GGG | 0.515758 | 3_4:+77743741 | Msa0524230:CDS |
| TTATTTGGAACAAGTATTGA+GGG | 0.519096 | 3_4:+77743712 | Msa0524230:CDS |
| ATCTGAGTTGTGAAAGAAGA+TGG | 0.523796 | 3_4:-77742607 | None:intergenic |
| ATATGCTACTTAACTTAACA+CGG | 0.525346 | 3_4:+77741679 | Msa0524230:five_prime_UTR |
| CTAGTGTTGCCAATTTGTCT+AGG | 0.527390 | 3_4:-77743504 | None:intergenic |
| TAATGGGATTGGATTGGAGG+AGG | 0.529258 | 3_4:-77741622 | None:intergenic |
| ATATGGTATGTTGCCAAGAA+TGG | 0.540598 | 3_4:-77742921 | None:intergenic |
| CTTCTAGTTATAATACCGAT+GGG | 0.541621 | 3_4:+77741820 | Msa0524230:CDS |
| ACTTTGATTTCTACGAACAA+AGG | 0.545752 | 3_4:+77743251 | Msa0524230:CDS |
| ACAAAACAGAATTCATACAT+TGG | 0.546953 | 3_4:+77743206 | Msa0524230:CDS |
| TCGGTATTATAACTAGAAGA+AGG | 0.551967 | 3_4:-77741816 | None:intergenic |
| AAGATGGTAGATGAATTTGA+AGG | 0.553423 | 3_4:-77742591 | None:intergenic |
| GAGAAGCCACTTTACGGTGG+AGG | 0.555307 | 3_4:+77742110 | Msa0524230:CDS |
| TTGGAACAAGTATTGAGGGA+AGG | 0.561612 | 3_4:+77743716 | Msa0524230:CDS |
| AGCATTATCCCATTCACTGA+AGG | 0.566045 | 3_4:-77743749 | None:intergenic |
| ATCTTCTTTCACAACTCAGA+TGG | 0.566431 | 3_4:+77742609 | Msa0524230:CDS |
| AGATTATAGAAGACAAGTGA+AGG | 0.569889 | 3_4:-77742188 | None:intergenic |
| ACCCTAAATACAATCCTGCA+TGG | 0.572180 | 3_4:+77743113 | Msa0524230:CDS |
| ATGGATGGAATTGGTCTCGA+GGG | 0.573124 | 3_4:+77743442 | Msa0524230:CDS |
| ACGGGCATCCTATTCCTCAC+TGG | 0.573439 | 3_4:+77741571 | Msa0524230:five_prime_UTR |
| CTCAGATGGTAAAGATCATG+TGG | 0.575507 | 3_4:+77742623 | Msa0524230:CDS |
| CACACTTGATCATGATACTC+AGG | 0.577347 | 3_4:+77743564 | Msa0524230:CDS |
| TATCACAAGGGAACAGAACA+GGG | 0.582185 | 3_4:-77741596 | None:intergenic |
| CTTCACTAGAACCTTTCTCA+AGG | 0.584604 | 3_4:+77744078 | Msa0524230:three_prime_UTR |
| CCTAATGGAAGGAAATTACA+AGG | 0.585093 | 3_4:+77742836 | Msa0524230:CDS |
| TCTAGTTATAATACCGATGG+GGG | 0.585265 | 3_4:+77741822 | Msa0524230:CDS |
| TCAACTTTCTCTCTATGTAG+AGG | 0.586344 | 3_4:+77743986 | Msa0524230:CDS |
| GCATTATCCCATTCACTGAA+GGG | 0.590706 | 3_4:-77743748 | None:intergenic |
| TTCTAGTTATAATACCGATG+GGG | 0.591385 | 3_4:+77741821 | Msa0524230:CDS |
| CAACTTACCATCAGGTGATG+TGG | 0.598575 | 3_4:+77743832 | Msa0524230:CDS |
| CCCTAAATACAATCCTGCAT+GGG | 0.602674 | 3_4:+77743114 | Msa0524230:CDS |
| GGATGTTGGTCATTTCTCAA+AGG | 0.605842 | 3_4:+77742549 | Msa0524230:CDS |
| GTCTGATACATGAACAGTGA+CGG | 0.610322 | 3_4:-77742813 | None:intergenic |
| TAGCATGTGAAGAAGAGCAC+GGG | 0.610956 | 3_4:+77741553 | Msa0524230:five_prime_UTR |
| TATGCTACTTAACTTAACAC+GGG | 0.613733 | 3_4:+77741680 | Msa0524230:five_prime_UTR |
| TATGGATGGAATTGGTCTCG+AGG | 0.616485 | 3_4:+77743441 | Msa0524230:CDS |
| GCCAACAAAATCATAGCTAG+AGG | 0.617131 | 3_4:+77743070 | Msa0524230:CDS |
| CAACAACACCAACACGAACA+CGG | 0.618184 | 3_4:+77742160 | Msa0524230:CDS |
| TCTGCCTTCATGAGGCTCTG+TGG | 0.618660 | 3_4:-77743005 | None:intergenic |
| TTGGAGGAGGTGATATCACA+AGG | 0.621040 | 3_4:-77741609 | None:intergenic |
| ATGTATCAGACCCTAATGGA+AGG | 0.621861 | 3_4:+77742825 | Msa0524230:CDS |
| TAGTTGACTCTGCCTTCATG+AGG | 0.625434 | 3_4:-77743013 | None:intergenic |
| TGGATAAACTTCTTCAAGAG+TGG | 0.627938 | 3_4:+77743855 | Msa0524230:CDS |
| AATTAAGTCACAGTGTCACA+GGG | 0.628706 | 3_4:-77744027 | None:intergenic |
| TGAATGGTATGGAATGAAGT+AGG | 0.634785 | 3_4:-77741781 | None:intergenic |
| TATGCCACAGAGCCTCATGA+AGG | 0.641188 | 3_4:+77743001 | Msa0524230:CDS |
| TTATCCACCACATCACCTGA+TGG | 0.643051 | 3_4:-77743839 | None:intergenic |
| CTTACCATCAGGTGATGTGG+TGG | 0.645932 | 3_4:+77743835 | Msa0524230:CDS |
| TAAACAGCAGTACTAGTCCA+AGG | 0.645943 | 3_4:+77741749 | Msa0524230:CDS |
| AGCCATTTACTCACCACCAA+TGG | 0.646406 | 3_4:+77742673 | Msa0524230:CDS |
| ATTCAGTTATGATAAAGGCA+AGG | 0.650648 | 3_4:+77742472 | Msa0524230:CDS |
| GAAGGTATCACAGATGAGCA+TGG | 0.651877 | 3_4:+77743893 | Msa0524230:CDS |
| GTAGCATGTGAAGAAGAGCA+CGG | 0.653426 | 3_4:+77741552 | Msa0524230:five_prime_UTR |
| AGGTGAAGCCGTGTTCGTGT+TGG | 0.662305 | 3_4:-77742168 | None:intergenic |
| GTAAGGTTAAGAACCCATGC+AGG | 0.663112 | 3_4:-77743127 | None:intergenic |
| TAAGCAGTAGAGTCATATAG+GGG | 0.663519 | 3_4:-77741946 | None:intergenic |
| TGACTCTACTGCTTACACTC+AGG | 0.668323 | 3_4:+77741954 | Msa0524230:CDS |
| GGCTGCTACAGTATGGGTGA+AGG | 0.668347 | 3_4:+77742437 | Msa0524230:intron |
| GCGTTGACGCTTATATCTCA+CGG | 0.669191 | 3_4:+77743389 | Msa0524230:CDS |
| CCAGAGAAGCCACTTTACGG+TGG | 0.680549 | 3_4:+77742107 | Msa0524230:CDS |
| AGAGTTGATAGAGACAGTTG+TGG | 0.708134 | 3_4:-77744111 | None:intergenic |
| AACAGAACAGGGGACCAGTG+AGG | 0.713722 | 3_4:-77741585 | None:intergenic |
| ATCACAAGGGAACAGAACAG+GGG | 0.724966 | 3_4:-77741595 | None:intergenic |
| TGTTGAAATCATTGTCTGTG+AGG | 0.726848 | 3_4:-77743811 | None:intergenic |
| TGGAGGAGGTGATATCACAA+GGG | 0.734851 | 3_4:-77741608 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAATTGAATCAATAAA+AGG | - | chr3_4:77741879-77741898 | None:intergenic | 15.0% |
| !! | AGAAAAATATATGAATGGTA+TGG | - | chr3_4:77741795-77741814 | None:intergenic | 20.0% |
| !! | AAGGAAGAAAAATATATGAA+TGG | - | chr3_4:77741800-77741819 | None:intergenic | 20.0% |
| !!! | GATAGATAATATGTTGTTTT+TGG | - | chr3_4:77742737-77742756 | None:intergenic | 20.0% |
| !! | TTATTTGTAGGCAATTTATT+TGG | + | chr3_4:77743697-77743716 | Msa0524230:intron | 20.0% |
| ! | TACTACGTTTGAAAGTTAAT+GGG | - | chr3_4:77741641-77741660 | None:intergenic | 25.0% |
| !! | ATATGCTACTTAACTTAACA+CGG | + | chr3_4:77741679-77741698 | Msa0524230:five_prime_UTR | 25.0% |
| ! | TACAGATTCAGTTATGATAA+AGG | + | chr3_4:77742467-77742486 | Msa0524230:CDS | 25.0% |
| ! | AATGAGACATATAACTGTAT+TGG | + | chr3_4:77742507-77742526 | Msa0524230:CDS | 25.0% |
| ! | ATGAGACATATAACTGTATT+GGG | + | chr3_4:77742508-77742527 | Msa0524230:CDS | 25.0% |
| ! | ATATCAAAAGACTTTCCTAT+TGG | + | chr3_4:77742881-77742900 | Msa0524230:CDS | 25.0% |
| !! | GTATGAATTCTGTTTTGTAT+TGG | - | chr3_4:77743204-77743223 | None:intergenic | 25.0% |
| ! | ACAAAACAGAATTCATACAT+TGG | + | chr3_4:77743206-77743225 | Msa0524230:CDS | 25.0% |
| ! | CAAAACAGAATTCATACATT+GGG | + | chr3_4:77743207-77743226 | Msa0524230:CDS | 25.0% |
| ! | AAGAAATGAAATGTAGCATT+GGG | - | chr3_4:77743283-77743302 | None:intergenic | 25.0% |
| ! | AAAGAAATGAAATGTAGCAT+TGG | - | chr3_4:77743284-77743303 | None:intergenic | 25.0% |
| ! | TTCATAAACAAAGTTGCTAA+AGG | - | chr3_4:77743328-77743347 | None:intergenic | 25.0% |
| ! | ATAAGAGAACTAAGACAATA+TGG | + | chr3_4:77743412-77743431 | Msa0524230:CDS | 25.0% |
| !!! | AAGACAATATGGTGTTTTTA+TGG | + | chr3_4:77743423-77743442 | Msa0524230:CDS | 25.0% |
| !! | TTTATTTGGAACAAGTATTG+AGG | + | chr3_4:77743711-77743730 | Msa0524230:CDS | 25.0% |
| !!! | TTATTTGGAACAAGTATTGA+GGG | + | chr3_4:77743712-77743731 | Msa0524230:CDS | 25.0% |
| ! | TCTTAGGAGAATATAGAATT+AGG | + | chr3_4:77743936-77743955 | Msa0524230:CDS | 25.0% |
| ! | CTTAGGAGAATATAGAATTA+GGG | + | chr3_4:77743937-77743956 | Msa0524230:CDS | 25.0% |
| ! | TTACATGAGCAGTTAAATAA+AGG | + | chr3_4:77744142-77744161 | Msa0524230:three_prime_UTR | 25.0% |
| TTCTTCACATGCTACAATAT+AGG | - | chr3_4:77741547-77741566 | None:intergenic | 30.0% | |
| GTACTACGTTTGAAAGTTAA+TGG | - | chr3_4:77741642-77741661 | None:intergenic | 30.0% | |
| ! | TATGCTACTTAACTTAACAC+GGG | + | chr3_4:77741680-77741699 | Msa0524230:five_prime_UTR | 30.0% |
| TCGGTATTATAACTAGAAGA+AGG | - | chr3_4:77741819-77741838 | None:intergenic | 30.0% | |
| ! | TCTTCTAGTTATAATACCGA+TGG | + | chr3_4:77741819-77741838 | Msa0524230:CDS | 30.0% |
| ! | CTTCTAGTTATAATACCGAT+GGG | + | chr3_4:77741820-77741839 | Msa0524230:CDS | 30.0% |
| ! | TTCTAGTTATAATACCGATG+GGG | + | chr3_4:77741821-77741840 | Msa0524230:CDS | 30.0% |
| AGATTATAGAAGACAAGTGA+AGG | - | chr3_4:77742191-77742210 | None:intergenic | 30.0% | |
| ! | GACACTATCTATTCTTTTTC+TGG | + | chr3_4:77742218-77742237 | Msa0524230:CDS | 30.0% |
| ATTAAAAATGATTCCGTTGC+CGG | + | chr3_4:77742304-77742323 | Msa0524230:intron | 30.0% | |
| GGATTATTGTTGATGTCATT+GGG | + | chr3_4:77742385-77742404 | Msa0524230:intron | 30.0% | |
| ATTCAGTTATGATAAAGGCA+AGG | + | chr3_4:77742472-77742491 | Msa0524230:CDS | 30.0% | |
| AAGATGGTAGATGAATTTGA+AGG | - | chr3_4:77742594-77742613 | None:intergenic | 30.0% | |
| !! | CAGTGTTGATGATATATTGT+TGG | - | chr3_4:77742707-77742726 | None:intergenic | 30.0% |
| CTTGTAATTTCCTTCCATTA+GGG | - | chr3_4:77742838-77742857 | None:intergenic | 30.0% | |
| TTCACAAACCAATTCTGATA+TGG | - | chr3_4:77742941-77742960 | None:intergenic | 30.0% | |
| !! | ATCAGAATTGGTTTGTGAAA+CGG | + | chr3_4:77742942-77742961 | Msa0524230:CDS | 30.0% |
| ! | TCTTTGAAAACGAGCTTAAA+TGG | + | chr3_4:77742978-77742997 | Msa0524230:CDS | 30.0% |
| CTCTAACAAATTGCATCATT+TGG | - | chr3_4:77743051-77743070 | None:intergenic | 30.0% | |
| ! | TAGAGGACACAATATTTTCT+GGG | + | chr3_4:77743087-77743106 | Msa0524230:CDS | 30.0% |
| ! | ACTTTGATTTCTACGAACAA+AGG | + | chr3_4:77743251-77743270 | Msa0524230:CDS | 30.0% |
| TGCTACATTTCATTTCTTTG+AGG | + | chr3_4:77743285-77743304 | Msa0524230:CDS | 30.0% | |
| !! | CAATATGGTGTTTTTATGGA+TGG | + | chr3_4:77743427-77743446 | Msa0524230:CDS | 30.0% |
| ! | TGCCTTCATTCTTTATTTGT+AGG | + | chr3_4:77743685-77743704 | Msa0524230:intron | 30.0% |
| TGCCTACAAATAAAGAATGA+AGG | - | chr3_4:77743690-77743709 | None:intergenic | 30.0% | |
| ! | ATGGTTCACATAGCTTTTAT+GGG | + | chr3_4:77743912-77743931 | Msa0524230:CDS | 30.0% |
| GAAAGTTAATGGGATTGGAT+TGG | - | chr3_4:77741631-77741650 | None:intergenic | 35.0% | |
| CGTTTGAAAGTTAATGGGAT+TGG | - | chr3_4:77741636-77741655 | None:intergenic | 35.0% | |
| TGAATGGTATGGAATGAAGT+AGG | - | chr3_4:77741784-77741803 | None:intergenic | 35.0% | |
| TCTAGTTATAATACCGATGG+GGG | + | chr3_4:77741822-77741841 | Msa0524230:CDS | 35.0% | |
| !! | CGATATTGTTTTGTTGCAGA+TGG | + | chr3_4:77741922-77741941 | Msa0524230:intron | 35.0% |
| TAAGCAGTAGAGTCATATAG+GGG | - | chr3_4:77741949-77741968 | None:intergenic | 35.0% | |
| GTAAGCAGTAGAGTCATATA+GGG | - | chr3_4:77741950-77741969 | None:intergenic | 35.0% | |
| TGTAAGCAGTAGAGTCATAT+AGG | - | chr3_4:77741951-77741970 | None:intergenic | 35.0% | |
| TTAAAAATGATTCCGTTGCC+GGG | + | chr3_4:77742305-77742324 | Msa0524230:intron | 35.0% | |
| ATAATCCGTTGTAGTCTAGT+TGG | - | chr3_4:77742372-77742391 | None:intergenic | 35.0% | |
| CGGATTATTGTTGATGTCAT+TGG | + | chr3_4:77742384-77742403 | Msa0524230:intron | 35.0% | |
| ATCTGAGTTGTGAAAGAAGA+TGG | - | chr3_4:77742610-77742629 | None:intergenic | 35.0% | |
| ATCTTCTTTCACAACTCAGA+TGG | + | chr3_4:77742609-77742628 | Msa0524230:CDS | 35.0% | |
| ! | ATTGTTGGTTGATTCTCCAT+TGG | - | chr3_4:77742692-77742711 | None:intergenic | 35.0% |
| CCTTGTAATTTCCTTCCATT+AGG | - | chr3_4:77742839-77742858 | None:intergenic | 35.0% | |
| CCTAATGGAAGGAAATTACA+AGG | + | chr3_4:77742836-77742855 | Msa0524230:CDS | 35.0% | |
| ATATGGTATGTTGCCAAGAA+TGG | - | chr3_4:77742924-77742943 | None:intergenic | 35.0% | |
| GCAACATACCATATCAGAAT+TGG | + | chr3_4:77742930-77742949 | Msa0524230:CDS | 35.0% | |
| ! | TCCTCTAGCTATGATTTTGT+TGG | - | chr3_4:77743074-77743093 | None:intergenic | 35.0% |
| ! | CTAGAGGACACAATATTTTC+TGG | + | chr3_4:77743086-77743105 | Msa0524230:CDS | 35.0% |
| ATCTTAACTGTGTACCTGTA+AGG | - | chr3_4:77743147-77743166 | None:intergenic | 35.0% | |
| !! | GGTGTTTTTATGGATGGAAT+TGG | + | chr3_4:77743433-77743452 | Msa0524230:CDS | 35.0% |
| GCTCTTATAAGTGGAAGATT+TGG | - | chr3_4:77743481-77743500 | None:intergenic | 35.0% | |
| ! | TCTAGGATAGCTCTTATAAG+TGG | - | chr3_4:77743490-77743509 | None:intergenic | 35.0% |
| AAGAGCTATCCTAGACAAAT+TGG | + | chr3_4:77743495-77743514 | Msa0524230:CDS | 35.0% | |
| ATCAATCTCAGTAAGCCAAA+CGG | - | chr3_4:77743536-77743555 | None:intergenic | 35.0% | |
| TGTTGAAATCATTGTCTGTG+AGG | - | chr3_4:77743814-77743833 | None:intergenic | 35.0% | |
| GATTTCAACAACTTACCATC+AGG | + | chr3_4:77743824-77743843 | Msa0524230:CDS | 35.0% | |
| TGGATAAACTTCTTCAAGAG+TGG | + | chr3_4:77743855-77743874 | Msa0524230:CDS | 35.0% | |
| ! | CATGGTTCACATAGCTTTTA+TGG | + | chr3_4:77743911-77743930 | Msa0524230:CDS | 35.0% |
| ! | CATAGCTTTTATGGGTTCTT+AGG | + | chr3_4:77743920-77743939 | Msa0524230:CDS | 35.0% |
| TCAACTTTCTCTCTATGTAG+AGG | + | chr3_4:77743986-77744005 | Msa0524230:CDS | 35.0% | |
| AATTAAGTCACAGTGTCACA+GGG | - | chr3_4:77744030-77744049 | None:intergenic | 35.0% | |
| AAATTAAGTCACAGTGTCAC+AGG | - | chr3_4:77744031-77744050 | None:intergenic | 35.0% | |
| ! | AGGTTCTAGTGAAGAAGTTA+AGG | - | chr3_4:77744072-77744091 | None:intergenic | 35.0% |
| GTTACAATTCTCCTTGAGAA+AGG | - | chr3_4:77744092-77744111 | None:intergenic | 35.0% | |
| TATCACAAGGGAACAGAACA+GGG | - | chr3_4:77741599-77741618 | None:intergenic | 40.0% | |
| ATATCACAAGGGAACAGAAC+AGG | - | chr3_4:77741600-77741619 | None:intergenic | 40.0% | |
| ! | AGTTAATGGGATTGGATTGG+AGG | - | chr3_4:77741628-77741647 | None:intergenic | 40.0% |
| TAAACAGCAGTACTAGTCCA+AGG | + | chr3_4:77741749-77741768 | Msa0524230:CDS | 40.0% | |
| AAAGAAGAAGAAACCCCCAT+CGG | - | chr3_4:77741838-77741857 | None:intergenic | 40.0% | |
| GGGGTTTCTTCTTCTTTCTA+TGG | + | chr3_4:77741841-77741860 | Msa0524230:CDS | 40.0% | |
| GTCTAGTTGGTTAGGATACT+CGG | - | chr3_4:77742359-77742378 | None:intergenic | 40.0% | |
| CCTAACCAACTAGACTACAA+CGG | + | chr3_4:77742364-77742383 | Msa0524230:intron | 40.0% | |
| CACGTCAGCATATATAACGA+TGG | - | chr3_4:77742418-77742437 | None:intergenic | 40.0% | |
| CATCGTTATATATGCTGACG+TGG | + | chr3_4:77742416-77742435 | Msa0524230:intron | 40.0% | |
| ! | TTTTAGCCAAACGTGGATGT+TGG | + | chr3_4:77742535-77742554 | Msa0524230:CDS | 40.0% |
| AAATGACCAACATCCACGTT+TGG | - | chr3_4:77742544-77742563 | None:intergenic | 40.0% | |
| GGATGTTGGTCATTTCTCAA+AGG | + | chr3_4:77742549-77742568 | Msa0524230:CDS | 40.0% | |
| TGTTGGTCATTTCTCAAAGG+TGG | + | chr3_4:77742552-77742571 | Msa0524230:CDS | 40.0% | |
| CTCAGATGGTAAAGATCATG+TGG | + | chr3_4:77742623-77742642 | Msa0524230:CDS | 40.0% | |
| GTCTGATACATGAACAGTGA+CGG | - | chr3_4:77742816-77742835 | None:intergenic | 40.0% | |
| GTTCATGTATCAGACCCTAA+TGG | + | chr3_4:77742821-77742840 | Msa0524230:CDS | 40.0% | |
| ATGTATCAGACCCTAATGGA+AGG | + | chr3_4:77742825-77742844 | Msa0524230:CDS | 40.0% | |
| GCCAACAAAATCATAGCTAG+AGG | + | chr3_4:77743070-77743089 | Msa0524230:CDS | 40.0% | |
| ACCCTAAATACAATCCTGCA+TGG | + | chr3_4:77743113-77743132 | Msa0524230:CDS | 40.0% | |
| CCCATGCAGGATTGTATTTA+GGG | - | chr3_4:77743117-77743136 | None:intergenic | 40.0% | |
| CCCTAAATACAATCCTGCAT+GGG | + | chr3_4:77743114-77743133 | Msa0524230:CDS | 40.0% | |
| ACCCATGCAGGATTGTATTT+AGG | - | chr3_4:77743118-77743137 | None:intergenic | 40.0% | |
| GATTTCTACGAACAAAGGCT+TGG | + | chr3_4:77743256-77743275 | Msa0524230:CDS | 40.0% | |
| CTAGTGTTGCCAATTTGTCT+AGG | - | chr3_4:77743507-77743526 | None:intergenic | 40.0% | |
| TCAATCTCAGTAAGCCAAAC+GGG | - | chr3_4:77743535-77743554 | None:intergenic | 40.0% | |
| CACACTTGATCATGATACTC+AGG | + | chr3_4:77743564-77743583 | Msa0524230:CDS | 40.0% | |
| TTGATCATGATACTCAGGTG+AGG | + | chr3_4:77743569-77743588 | Msa0524230:intron | 40.0% | |
| !! | TTGGAACAAGTATTGAGGGA+AGG | + | chr3_4:77743716-77743735 | Msa0524230:CDS | 40.0% |
| GCATTATCCCATTCACTGAA+GGG | - | chr3_4:77743751-77743770 | None:intergenic | 40.0% | |
| AGCATTATCCCATTCACTGA+AGG | - | chr3_4:77743752-77743771 | None:intergenic | 40.0% | |
| CAGTGAATGGGATAATGCTT+TGG | + | chr3_4:77743753-77743772 | Msa0524230:CDS | 40.0% | |
| CTTCACTAGAACCTTTCTCA+AGG | + | chr3_4:77744078-77744097 | Msa0524230:three_prime_UTR | 40.0% | |
| !! | AGAGTTGATAGAGACAGTTG+TGG | - | chr3_4:77744114-77744133 | None:intergenic | 40.0% |
| CTGTCTCTATCAACTCTGAT+TGG | + | chr3_4:77744117-77744136 | Msa0524230:three_prime_UTR | 40.0% | |
| AGTCACAGTCACGTGAGATT+TGG | + | chr3_4:77741500-77741519 | Msa0524230:five_prime_UTR | 45.0% | |
| GTAGCATGTGAAGAAGAGCA+CGG | + | chr3_4:77741552-77741571 | Msa0524230:five_prime_UTR | 45.0% | |
| ! | TAGCATGTGAAGAAGAGCAC+GGG | + | chr3_4:77741553-77741572 | Msa0524230:five_prime_UTR | 45.0% |
| ATCACAAGGGAACAGAACAG+GGG | - | chr3_4:77741598-77741617 | None:intergenic | 45.0% | |
| TGGAGGAGGTGATATCACAA+GGG | - | chr3_4:77741611-77741630 | None:intergenic | 45.0% | |
| TTGGAGGAGGTGATATCACA+AGG | - | chr3_4:77741612-77741631 | None:intergenic | 45.0% | |
| ! | TAATGGGATTGGATTGGAGG+AGG | - | chr3_4:77741625-77741644 | None:intergenic | 45.0% |
| GAAGTAGGTTGCATCATCCT+TGG | - | chr3_4:77741769-77741788 | None:intergenic | 45.0% | |
| TGACTCTACTGCTTACACTC+AGG | + | chr3_4:77741954-77741973 | Msa0524230:CDS | 45.0% | |
| ! | CATCCAGAGAAGCCACTTTA+CGG | + | chr3_4:77742104-77742123 | Msa0524230:CDS | 45.0% |
| CAACAACACCAACACGAACA+CGG | + | chr3_4:77742160-77742179 | Msa0524230:CDS | 45.0% | |
| CCGTTGTAGTCTAGTTGGTT+AGG | - | chr3_4:77742367-77742386 | None:intergenic | 45.0% | |
| AGCCATTTACTCACCACCAA+TGG | + | chr3_4:77742673-77742692 | Msa0524230:CDS | 45.0% | |
| !! | CTCCATTGGTGGTGAGTAAA+TGG | - | chr3_4:77742678-77742697 | None:intergenic | 45.0% |
| ! | GTTGGTTGATTCTCCATTGG+TGG | - | chr3_4:77742689-77742708 | None:intergenic | 45.0% |
| ! | TTTGCTATCGCAGAGCCAAT+AGG | - | chr3_4:77742899-77742918 | None:intergenic | 45.0% |
| GCGATAGCAAAGACCATTCT+TGG | + | chr3_4:77742908-77742927 | Msa0524230:CDS | 45.0% | |
| ! | TAGTTGACTCTGCCTTCATG+AGG | - | chr3_4:77743016-77743035 | None:intergenic | 45.0% |
| GTAAGGTTAAGAACCCATGC+AGG | - | chr3_4:77743130-77743149 | None:intergenic | 45.0% | |
| GCATGGGTTCTTAACCTTAC+AGG | + | chr3_4:77743130-77743149 | Msa0524230:CDS | 45.0% | |
| ! | GCGTTGACGCTTATATCTCA+CGG | + | chr3_4:77743389-77743408 | Msa0524230:CDS | 45.0% |
| ! | TATGGATGGAATTGGTCTCG+AGG | + | chr3_4:77743441-77743460 | Msa0524230:CDS | 45.0% |
| ! | ATGGATGGAATTGGTCTCGA+GGG | + | chr3_4:77743442-77743461 | Msa0524230:CDS | 45.0% |
| CAACACTAGATCTTCCCGTT+TGG | + | chr3_4:77743518-77743537 | Msa0524230:CDS | 45.0% | |
| TTCTCACACCCTTCAGTGAA+TGG | + | chr3_4:77743740-77743759 | Msa0524230:CDS | 45.0% | |
| TCTCACACCCTTCAGTGAAT+GGG | + | chr3_4:77743741-77743760 | Msa0524230:CDS | 45.0% | |
| TGGACAGCACTTCATCCATA+TGG | + | chr3_4:77743773-77743792 | Msa0524230:CDS | 45.0% | |
| GGACAGCACTTCATCCATAT+GGG | + | chr3_4:77743774-77743793 | Msa0524230:CDS | 45.0% | |
| ! | CACATTTGGTAGCACCCATA+TGG | - | chr3_4:77743791-77743810 | None:intergenic | 45.0% |
| CATTGTCTGTGAGGCACATT+TGG | - | chr3_4:77743805-77743824 | None:intergenic | 45.0% | |
| CAACTTACCATCAGGTGATG+TGG | + | chr3_4:77743832-77743851 | Msa0524230:CDS | 45.0% | |
| TTATCCACCACATCACCTGA+TGG | - | chr3_4:77743842-77743861 | None:intergenic | 45.0% | |
| CTTCTTCAAGAGTGGCAAAC+TGG | + | chr3_4:77743863-77743882 | Msa0524230:CDS | 45.0% | |
| !! | GAAGGTATCACAGATGAGCA+TGG | + | chr3_4:77743893-77743912 | Msa0524230:CDS | 45.0% |
| CTACTGCTTACACTCAGGTG+AGG | + | chr3_4:77741959-77741978 | Msa0524230:intron | 50.0% | |
| TGACGTGGCTGCTACAGTAT+GGG | + | chr3_4:77742431-77742450 | Msa0524230:intron | 50.0% | |
| !! | GGGACAGTTTTAGCCAAACG+TGG | + | chr3_4:77742528-77742547 | Msa0524230:CDS | 50.0% |
| TATGCCACAGAGCCTCATGA+AGG | + | chr3_4:77743001-77743020 | Msa0524230:CDS | 50.0% | |
| GTAGCTAGCTAGCTAGCTAG+AGG | + | chr3_4:77743591-77743610 | Msa0524230:intron | 50.0% | |
| CTTACCATCAGGTGATGTGG+TGG | + | chr3_4:77743835-77743854 | Msa0524230:CDS | 50.0% | |
| TGGCAAACTGGTCGTGTAGA+AGG | + | chr3_4:77743875-77743894 | Msa0524230:CDS | 50.0% | |
| ACGGGCATCCTATTCCTCAC+TGG | + | chr3_4:77741571-77741590 | Msa0524230:five_prime_UTR | 55.0% | |
| ACAGGGGACCAGTGAGGAAT+AGG | - | chr3_4:77741582-77741601 | None:intergenic | 55.0% | |
| AACAGAACAGGGGACCAGTG+AGG | - | chr3_4:77741588-77741607 | None:intergenic | 55.0% | |
| CCACCGTAAAGTGGCTTCTC+TGG | - | chr3_4:77742110-77742129 | None:intergenic | 55.0% | |
| ! | CCAGAGAAGCCACTTTACGG+TGG | + | chr3_4:77742107-77742126 | Msa0524230:CDS | 55.0% |
| ! | GAGAAGCCACTTTACGGTGG+AGG | + | chr3_4:77742110-77742129 | Msa0524230:CDS | 55.0% |
| ! | AAGCCACTTTACGGTGGAGG+AGG | + | chr3_4:77742113-77742132 | Msa0524230:CDS | 55.0% |
| AGGTGAAGCCGTGTTCGTGT+TGG | - | chr3_4:77742171-77742190 | None:intergenic | 55.0% | |
| CTGACGTGGCTGCTACAGTA+TGG | + | chr3_4:77742430-77742449 | Msa0524230:intron | 55.0% | |
| GGCTGCTACAGTATGGGTGA+AGG | + | chr3_4:77742437-77742456 | Msa0524230:intron | 55.0% | |
| TCTGCCTTCATGAGGCTCTG+TGG | - | chr3_4:77743008-77743027 | None:intergenic | 55.0% | |
| CCTCCTCCTCCACCGTAAAG+TGG | - | chr3_4:77742119-77742138 | None:intergenic | 60.0% | |
| CCACTTTACGGTGGAGGAGG+AGG | + | chr3_4:77742116-77742135 | Msa0524230:CDS | 60.0% | |
| AGAGACCCGGGTTCAAGTCC+CGG | - | chr3_4:77742326-77742345 | None:intergenic | 60.0% | |
| GGACTTGAACCCGGGTCTCT+CGG | + | chr3_4:77742326-77742345 | Msa0524230:intron | 60.0% | |
| GACTTGAACCCGGGTCTCTC+GGG | + | chr3_4:77742327-77742346 | Msa0524230:intron | 60.0% | |
| CCGGGTTCAAGTCCCGGCAA+CGG | - | chr3_4:77742320-77742339 | None:intergenic | 65.0% | |
| CCGTTGCCGGGACTTGAACC+CGG | + | chr3_4:77742317-77742336 | Msa0524230:intron | 65.0% | |
| CGTTGCCGGGACTTGAACCC+GGG | + | chr3_4:77742318-77742337 | Msa0524230:intron | 65.0% | |
| GGCTCTCACCCGAGAGACCC+GGG | - | chr3_4:77742338-77742357 | None:intergenic | 70.0% | |
| CGGCTCTCACCCGAGAGACC+CGG | - | chr3_4:77742339-77742358 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 77741470 | 77744276 | 77741470 | ID=Msa0524230;Name=Msa0524230 |
| chr3_4 | mRNA | 77741470 | 77744276 | 77741470 | ID=Msa0524230-mRNA-1;Parent=Msa0524230;Name=Msa0524230-mRNA-1;_AED=0.08;_eAED=0.08;_QI=245|1|1|1|1|1|6|234|575 |
| chr3_4 | exon | 77741470 | 77741862 | 77741470 | ID=Msa0524230-mRNA-1:exon:22792;Parent=Msa0524230-mRNA-1 |
| chr3_4 | exon | 77741941 | 77741975 | 77741941 | ID=Msa0524230-mRNA-1:exon:22793;Parent=Msa0524230-mRNA-1 |
| chr3_4 | exon | 77742095 | 77742239 | 77742095 | ID=Msa0524230-mRNA-1:exon:22794;Parent=Msa0524230-mRNA-1 |
| chr3_4 | exon | 77742448 | 77742725 | 77742448 | ID=Msa0524230-mRNA-1:exon:22795;Parent=Msa0524230-mRNA-1 |
| chr3_4 | exon | 77742800 | 77743585 | 77742800 | ID=Msa0524230-mRNA-1:exon:22796;Parent=Msa0524230-mRNA-1 |
| chr3_4 | exon | 77743707 | 77744276 | 77743707 | ID=Msa0524230-mRNA-1:exon:22797;Parent=Msa0524230-mRNA-1 |
| chr3_4 | five_prime_UTR | 77741470 | 77741714 | 77741470 | ID=Msa0524230-mRNA-1:five_prime_utr;Parent=Msa0524230-mRNA-1 |
| chr3_4 | CDS | 77741715 | 77741862 | 77741715 | ID=Msa0524230-mRNA-1:cds;Parent=Msa0524230-mRNA-1 |
| chr3_4 | CDS | 77741941 | 77741975 | 77741941 | ID=Msa0524230-mRNA-1:cds;Parent=Msa0524230-mRNA-1 |
| chr3_4 | CDS | 77742095 | 77742239 | 77742095 | ID=Msa0524230-mRNA-1:cds;Parent=Msa0524230-mRNA-1 |
| chr3_4 | CDS | 77742448 | 77742725 | 77742448 | ID=Msa0524230-mRNA-1:cds;Parent=Msa0524230-mRNA-1 |
| chr3_4 | CDS | 77742800 | 77743585 | 77742800 | ID=Msa0524230-mRNA-1:cds;Parent=Msa0524230-mRNA-1 |
| chr3_4 | CDS | 77743707 | 77744042 | 77743707 | ID=Msa0524230-mRNA-1:cds;Parent=Msa0524230-mRNA-1 |
| chr3_4 | three_prime_UTR | 77744043 | 77744276 | 77744043 | ID=Msa0524230-mRNA-1:three_prime_utr;Parent=Msa0524230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
