Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367430 | XP_024635160.1 | 90.747 | 562 | 24 | 7 | 20 | 557 | 2 | 559 | 0.0 | 1017 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367430 | sp|Q680B7|XYN4_ARATH | 35.370 | 540 | 299 | 14 | 54 | 553 | 32 | 561 | 1.44e-96 | 308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367430 | A0A396J1W7 | 90.747 | 562 | 24 | 7 | 20 | 557 | 2 | 559 | 0.0 | 1017 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030730 | Msa1367430 | 0.804937 | 1.699773e-49 | -8.615850e-47 |
| Msa0041540 | Msa1367430 | 0.805249 | 1.462498e-49 | -8.615850e-47 |
| Msa0050580 | Msa1367430 | 0.825561 | 4.384233e-54 | -8.615850e-47 |
| Msa0053110 | Msa1367430 | 0.809202 | 2.126233e-50 | -8.615850e-47 |
| Msa1365000 | Msa1367430 | 0.954985 | 8.570941e-113 | -8.615850e-47 |
| Msa1365870 | Msa1367430 | 0.809379 | 1.947716e-50 | -8.615850e-47 |
| Msa1367430 | Msa1379990 | 0.802363 | 5.812773e-49 | -8.615850e-47 |
| Msa1367430 | Msa1382310 | 0.805779 | 1.132011e-49 | -8.615850e-47 |
| Msa1367430 | Msa1398480 | 0.816096 | 6.593726e-52 | -8.615850e-47 |
| Msa1367430 | Msa1417630 | 0.935583 | 6.744335e-97 | -8.615850e-47 |
| Msa1367430 | Msa1435580 | 0.981924 | 8.673055e-154 | -8.615850e-47 |
| Msa1367430 | Msa1438360 | 0.816856 | 4.456555e-52 | -8.615850e-47 |
| Msa0607600 | Msa1367430 | -0.819231 | 1.294976e-52 | -8.615850e-47 |
| Msa0639370 | Msa1367430 | 0.812132 | 4.944537e-51 | -8.615850e-47 |
| Msa0661470 | Msa1367430 | 0.819239 | 1.289002e-52 | -8.615850e-47 |
| Msa0667970 | Msa1367430 | 0.810090 | 1.370162e-50 | -8.615850e-47 |
| Msa0687860 | Msa1367430 | -0.822378 | 2.446140e-53 | -8.615850e-47 |
| Msa0725920 | Msa1367430 | 0.806126 | 9.572041e-50 | -8.615850e-47 |
| Msa0766470 | Msa1367430 | 0.803626 | 3.186304e-49 | -8.615850e-47 |
| Msa0139900 | Msa1367430 | 0.805360 | 1.386045e-49 | -8.615850e-47 |
| Msa0185700 | Msa1367430 | 0.804233 | 2.382847e-49 | -8.615850e-47 |
| Msa1229700 | Msa1367430 | 0.802452 | 5.574130e-49 | -8.615850e-47 |
| Msa0386270 | Msa1367430 | 0.823502 | 1.338013e-53 | -8.615850e-47 |
| Msa0436090 | Msa1367430 | 0.818291 | 2.116606e-52 | -8.615850e-47 |
| Msa1018790 | Msa1367430 | 0.811434 | 7.013638e-51 | -8.615850e-47 |
| Msa1134400 | Msa1367430 | 0.802064 | 6.698914e-49 | -8.615850e-47 |
| Msa1197110 | Msa1367430 | 0.814948 | 1.187587e-51 | -8.615850e-47 |
| Msa0506760 | Msa1367430 | 0.817366 | 3.422820e-52 | -8.615850e-47 |
| Msa0524230 | Msa1367430 | 0.983549 | 4.781511e-158 | -8.615850e-47 |
| Msa0532840 | Msa1367430 | 0.826770 | 2.260565e-54 | -8.615850e-47 |
| Msa0533010 | Msa1367430 | 0.820679 | 6.039444e-53 | -8.615850e-47 |
| Msa0546840 | Msa1367430 | 0.804159 | 2.470004e-49 | -8.615850e-47 |
| Msa0937550 | Msa1367430 | 0.803623 | 3.191982e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367430 | MtrunA17_Chr3g0145541 | 90.747 | 562 | 24 | 7 | 20 | 557 | 2 | 559 | 0.0 | 1017 |
| Msa1367430 | MtrunA17_Chr5g0421191 | 38.434 | 549 | 283 | 9 | 33 | 536 | 4 | 542 | 9.73e-126 | 380 |
| Msa1367430 | MtrunA17_Chr4g0037551 | 43.231 | 458 | 247 | 8 | 90 | 544 | 103 | 550 | 1.10e-125 | 380 |
| Msa1367430 | MtrunA17_Chr7g0223191 | 42.563 | 437 | 241 | 5 | 100 | 533 | 84 | 513 | 1.31e-122 | 371 |
| Msa1367430 | MtrunA17_Chr1g0207241 | 38.041 | 531 | 269 | 9 | 35 | 516 | 23 | 542 | 2.55e-111 | 343 |
| Msa1367430 | MtrunA17_Chr1g0207201 | 40.855 | 421 | 236 | 5 | 119 | 533 | 33 | 446 | 1.55e-109 | 335 |
| Msa1367430 | MtrunA17_Chr1g0207211 | 35.917 | 529 | 285 | 8 | 54 | 533 | 31 | 554 | 4.09e-109 | 338 |
| Msa1367430 | MtrunA17_Chr1g0207231 | 38.876 | 445 | 255 | 6 | 119 | 553 | 33 | 470 | 1.38e-107 | 330 |
| Msa1367430 | MtrunA17_Chr3g0135341 | 36.508 | 441 | 252 | 11 | 128 | 557 | 317 | 740 | 8.38e-77 | 257 |
| Msa1367430 | MtrunA17_Chr1g0151951 | 34.096 | 437 | 270 | 7 | 128 | 557 | 505 | 930 | 2.20e-74 | 254 |
| Msa1367430 | MtrunA17_Chr4g0068081 | 31.088 | 193 | 99 | 4 | 313 | 505 | 1 | 159 | 5.65e-22 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1367430 | AT4G38650.1 | 63.956 | 541 | 170 | 4 | 42 | 557 | 22 | 562 | 0.0 | 723 |
| Msa1367430 | AT4G38300.1 | 71.483 | 263 | 64 | 2 | 186 | 447 | 12 | 264 | 5.38e-138 | 401 |
| Msa1367430 | AT4G33840.1 | 37.138 | 552 | 294 | 9 | 54 | 557 | 25 | 571 | 1.46e-127 | 385 |
| Msa1367430 | AT4G33830.1 | 38.757 | 547 | 281 | 10 | 54 | 552 | 26 | 566 | 8.81e-125 | 378 |
| Msa1367430 | AT4G33860.1 | 38.403 | 526 | 273 | 8 | 54 | 533 | 25 | 545 | 4.43e-124 | 377 |
| Msa1367430 | AT2G14690.1 | 35.370 | 540 | 299 | 14 | 54 | 553 | 32 | 561 | 1.46e-97 | 308 |
| Msa1367430 | AT4G33810.1 | 36.771 | 446 | 265 | 10 | 110 | 544 | 72 | 511 | 4.85e-94 | 297 |
| Msa1367430 | AT4G33810.5 | 36.771 | 446 | 265 | 10 | 110 | 544 | 72 | 511 | 4.85e-94 | 297 |
| Msa1367430 | AT4G33810.2 | 36.771 | 446 | 265 | 10 | 110 | 544 | 112 | 551 | 1.82e-93 | 297 |
| Msa1367430 | AT4G33810.3 | 36.771 | 446 | 265 | 10 | 110 | 544 | 112 | 551 | 1.82e-93 | 297 |
| Msa1367430 | AT4G33810.4 | 36.771 | 446 | 265 | 10 | 110 | 544 | 112 | 551 | 1.82e-93 | 297 |
| Msa1367430 | AT4G33820.1 | 37.010 | 408 | 245 | 7 | 108 | 509 | 110 | 511 | 3.47e-87 | 281 |
| Msa1367430 | AT1G58370.1 | 36.842 | 380 | 223 | 7 | 186 | 557 | 544 | 914 | 2.03e-76 | 259 |
| Msa1367430 | AT1G58370.2 | 36.842 | 380 | 223 | 7 | 186 | 557 | 572 | 942 | 3.04e-76 | 259 |
| Msa1367430 | AT1G10050.2 | 34.312 | 443 | 279 | 8 | 119 | 557 | 629 | 1063 | 3.82e-73 | 253 |
| Msa1367430 | AT1G10050.1 | 34.312 | 443 | 279 | 8 | 119 | 557 | 629 | 1063 | 3.82e-73 | 253 |
| Msa1367430 | AT1G10050.3 | 34.312 | 443 | 279 | 8 | 119 | 557 | 661 | 1095 | 4.14e-73 | 253 |
| Msa1367430 | AT4G08160.1 | 31.929 | 451 | 286 | 7 | 108 | 548 | 301 | 740 | 1.89e-66 | 230 |
| Msa1367430 | AT4G08160.2 | 34.626 | 361 | 229 | 4 | 108 | 465 | 301 | 657 | 5.54e-60 | 211 |
Find 141 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGGAGAATATAGAATT+AGG | 0.197889 | tig0018513:+108851 | Msa1367430:CDS |
| TTATTTGTAGGCAATTTATT+TGG | 0.199684 | tig0018513:+108612 | Msa1367430:intron |
| ACCCATGCAGGATTGTATTT+AGG | 0.215174 | tig0018513:-108030 | None:intergenic |
| GTACTACGTTTGAAAGTTAA+TGG | 0.228244 | tig0018513:-106567 | None:intergenic |
| GGGGTTTCTTCTTCTTTCTA+TGG | 0.261359 | tig0018513:+106770 | Msa1367430:CDS |
| CCCATGCAGGATTGTATTTA+GGG | 0.265487 | tig0018513:-108029 | None:intergenic |
| TCTTTGAAAACGAGCTTAAA+TGG | 0.282741 | tig0018513:+107893 | Msa1367430:CDS |
| GCATGGGTTCTTAACCTTAC+AGG | 0.285919 | tig0018513:+108045 | Msa1367430:CDS |
| CTCCATTGGTGGTGAGTAAA+TGG | 0.299076 | tig0018513:-107590 | None:intergenic |
| CTCTAACAAATTGCATCATT+TGG | 0.305368 | tig0018513:-107963 | None:intergenic |
| CCTTGTAATTTCCTTCCATT+AGG | 0.307008 | tig0018513:-107751 | None:intergenic |
| TTCACAAACCAATTCTGATA+TGG | 0.315882 | tig0018513:-107853 | None:intergenic |
| AAGAGCTATCCTAGACAAAT+TGG | 0.323111 | tig0018513:+108410 | Msa1367430:CDS |
| TGTAAGCAGTAGAGTCATAT+AGG | 0.332357 | tig0018513:-106877 | None:intergenic |
| GCGATAGCAAAGACCATTCT+TGG | 0.334413 | tig0018513:+107823 | Msa1367430:CDS |
| CTTGTAATTTCCTTCCATTA+GGG | 0.341062 | tig0018513:-107750 | None:intergenic |
| CATTGTCTGTGAGGCACATT+TGG | 0.350045 | tig0018513:-108717 | None:intergenic |
| ATATCAAAAGACTTTCCTAT+TGG | 0.362210 | tig0018513:+107796 | Msa1367430:CDS |
| TTACATGAGCAGTTAAATAA+AGG | 0.364013 | tig0018513:+109057 | Msa1367430:three_prime_UTR |
| GCAACATACCATATCAGAAT+TGG | 0.364428 | tig0018513:+107845 | Msa1367430:CDS |
| GTAAGCAGTAGAGTCATATA+GGG | 0.368725 | tig0018513:-106876 | None:intergenic |
| GCTCTTATAAGTGGAAGATT+TGG | 0.368945 | tig0018513:-108393 | None:intergenic |
| CCACCGTAAAGTGGCTTCTC+TGG | 0.371358 | tig0018513:-107021 | None:intergenic |
| ATGAGACATATAACTGTATT+GGG | 0.377080 | tig0018513:+107423 | Msa1367430:CDS |
| TACAGATTCAGTTATGATAA+AGG | 0.377300 | tig0018513:+107382 | Msa1367430:CDS |
| TACTACGTTTGAAAGTTAAT+GGG | 0.377977 | tig0018513:-106566 | None:intergenic |
| TGGACAGCACTTCATCCATA+TGG | 0.380084 | tig0018513:+108688 | Msa1367430:CDS |
| AGTCACAGTCACGTGAGATT+TGG | 0.382876 | tig0018513:+106418 | Msa1367430:five_prime_UTR |
| CGTTTGAAAGTTAATGGGAT+TGG | 0.383246 | tig0018513:-106561 | None:intergenic |
| AATGAGACATATAACTGTAT+TGG | 0.393839 | tig0018513:+107422 | Msa1367430:CDS |
| CATCCAGAGAAGCCACTTTA+CGG | 0.403538 | tig0018513:+107018 | Msa1367430:CDS |
| CTTAGGAGAATATAGAATTA+GGG | 0.404134 | tig0018513:+108852 | Msa1367430:CDS |
| ACAGGGGACCAGTGAGGAAT+AGG | 0.404498 | tig0018513:-106497 | None:intergenic |
| AGGTTCTAGTGAAGAAGTTA+AGG | 0.410579 | tig0018513:-108984 | None:intergenic |
| ATCAGAATTGGTTTGTGAAA+CGG | 0.414114 | tig0018513:+107857 | Msa1367430:CDS |
| TGGCAAACTGGTCGTGTAGA+AGG | 0.419661 | tig0018513:+108790 | Msa1367430:CDS |
| CTTCTTCAAGAGTGGCAAAC+TGG | 0.421800 | tig0018513:+108778 | Msa1367430:CDS |
| CAGTGAATGGGATAATGCTT+TGG | 0.423472 | tig0018513:+108668 | Msa1367430:CDS |
| TGAACTAAGTGATGTTAATC+TGG | 0.429828 | tig0018513:+106375 | None:intergenic |
| ATTGGATTGGATTGGATTGG+AGG | 0.432882 | tig0018513:-106543 | None:intergenic |
| TTCTCACACCCTTCAGTGAA+TGG | 0.434692 | tig0018513:+108655 | Msa1367430:CDS |
| ATATCACAAGGGAACAGAAC+AGG | 0.434939 | tig0018513:-106515 | None:intergenic |
| GTTACAATTCTCCTTGAGAA+AGG | 0.439341 | tig0018513:-109004 | None:intergenic |
| CACATTTGGTAGCACCCATA+TGG | 0.442952 | tig0018513:-108703 | None:intergenic |
| CAACACTAGATCTTCCCGTT+TGG | 0.443376 | tig0018513:+108433 | Msa1367430:CDS |
| ATAAGAGAACTAAGACAATA+TGG | 0.448976 | tig0018513:+108327 | Msa1367430:CDS |
| GAAAGTTAATGGGATTGGAT+TGG | 0.453214 | tig0018513:-106556 | None:intergenic |
| TGCTACATTTCATTTCTTTG+AGG | 0.453293 | tig0018513:+108200 | Msa1367430:CDS |
| AAGAAATGAAATGTAGCATT+GGG | 0.454110 | tig0018513:-108195 | None:intergenic |
| TTCTTCACATGCTACAATAT+AGG | 0.454734 | tig0018513:-106462 | None:intergenic |
| CAGTGTTGATGATATATTGT+TGG | 0.461856 | tig0018513:-107619 | None:intergenic |
| GGGATTGGATTGGATTGGAT+TGG | 0.463586 | tig0018513:-106546 | None:intergenic |
| ATCAATCTCAGTAAGCCAAA+CGG | 0.466197 | tig0018513:-108448 | None:intergenic |
| ATCTTAACTGTGTACCTGTA+AGG | 0.467889 | tig0018513:-108059 | None:intergenic |
| TCAATCTCAGTAAGCCAAAC+GGG | 0.472110 | tig0018513:-108447 | None:intergenic |
| CTGTCTCTATCAACTCTGAT+TGG | 0.479768 | tig0018513:+109032 | Msa1367430:three_prime_UTR |
| AAAGAAATGAAATGTAGCAT+TGG | 0.480004 | tig0018513:-108196 | None:intergenic |
| CAAAACAGAATTCATACATT+GGG | 0.480784 | tig0018513:+108122 | Msa1367430:CDS |
| GATTTCTACGAACAAAGGCT+TGG | 0.482875 | tig0018513:+108171 | Msa1367430:CDS |
| CCACTTTACGGTGGAGGAGG+AGG | 0.484097 | tig0018513:+107030 | Msa1367430:CDS |
| GTTCATGTATCAGACCCTAA+TGG | 0.488462 | tig0018513:+107736 | Msa1367430:CDS |
| TTTGCTATCGCAGAGCCAAT+AGG | 0.489645 | tig0018513:-107811 | None:intergenic |
| TTTATTTGGAACAAGTATTG+AGG | 0.493659 | tig0018513:+108626 | Msa1367430:CDS |
| AAATGACCAACATCCACGTT+TGG | 0.493661 | tig0018513:-107456 | None:intergenic |
| GAAGTAGGTTGCATCATCCT+TGG | 0.493827 | tig0018513:-106695 | None:intergenic |
| AAATTAAGTCACAGTGTCAC+AGG | 0.494605 | tig0018513:-108943 | None:intergenic |
| GGACAGCACTTCATCCATAT+GGG | 0.495243 | tig0018513:+108689 | Msa1367430:CDS |
| TCTAGGATAGCTCTTATAAG+TGG | 0.496749 | tig0018513:-108402 | None:intergenic |
| GATTTCAACAACTTACCATC+AGG | 0.497916 | tig0018513:+108739 | Msa1367430:CDS |
| AAGCCACTTTACGGTGGAGG+AGG | 0.499159 | tig0018513:+107027 | Msa1367430:CDS |
| TTCATAAACAAAGTTGCTAA+AGG | 0.499339 | tig0018513:-108240 | None:intergenic |
| TCTTCTAGTTATAATACCGA+TGG | 0.501758 | tig0018513:+106748 | Msa1367430:CDS |
| TTAATGGGATTGGATTGGAT+TGG | 0.502425 | tig0018513:-106551 | None:intergenic |
| GTTGGTTGATTCTCCATTGG+TGG | 0.504409 | tig0018513:-107601 | None:intergenic |
| CCTCCTCCTCCACCGTAAAG+TGG | 0.507893 | tig0018513:-107030 | None:intergenic |
| ATTGTTGGTTGATTCTCCAT+TGG | 0.513327 | tig0018513:-107604 | None:intergenic |
| TGTTGGTCATTTCTCAAAGG+TGG | 0.513377 | tig0018513:+107467 | Msa1367430:CDS |
| TCTCACACCCTTCAGTGAAT+GGG | 0.515758 | tig0018513:+108656 | Msa1367430:CDS |
| TTATTTGGAACAAGTATTGA+GGG | 0.519096 | tig0018513:+108627 | Msa1367430:CDS |
| GGATTGGATTGGATTGGAGG+AGG | 0.522041 | tig0018513:-106540 | None:intergenic |
| ATCTGAGTTGTGAAAGAAGA+TGG | 0.523796 | tig0018513:-107522 | None:intergenic |
| CTAGTGTTGCCAATTTGTCT+AGG | 0.527390 | tig0018513:-108419 | None:intergenic |
| ATATGGTATGTTGCCAAGAA+TGG | 0.540598 | tig0018513:-107836 | None:intergenic |
| CTTCTAGTTATAATACCGAT+GGG | 0.541621 | tig0018513:+106749 | Msa1367430:CDS |
| ACTTTGATTTCTACGAACAA+AGG | 0.545752 | tig0018513:+108166 | Msa1367430:CDS |
| ACAAAACAGAATTCATACAT+TGG | 0.546953 | tig0018513:+108121 | Msa1367430:CDS |
| TCGGTATTATAACTAGAAGA+AGG | 0.551967 | tig0018513:-106745 | None:intergenic |
| AAGATGGTAGATGAATTTGA+AGG | 0.553423 | tig0018513:-107506 | None:intergenic |
| GAGAAGCCACTTTACGGTGG+AGG | 0.555307 | tig0018513:+107024 | Msa1367430:CDS |
| TTGGAACAAGTATTGAGGGA+AGG | 0.561612 | tig0018513:+108631 | Msa1367430:CDS |
| TATGGCTACTTAACTTAACA+CGG | 0.562500 | tig0018513:+106608 | Msa1367430:five_prime_UTR |
| AGCATTATCCCATTCACTGA+AGG | 0.566045 | tig0018513:-108664 | None:intergenic |
| ATCTTCTTTCACAACTCAGA+TGG | 0.566431 | tig0018513:+107524 | Msa1367430:CDS |
| AGATTATAGAAGACAAGTGA+AGG | 0.569889 | tig0018513:-107102 | None:intergenic |
| ACCCTAAATACAATCCTGCA+TGG | 0.572180 | tig0018513:+108028 | Msa1367430:CDS |
| ATGGATGGAATTGGTCTCGA+GGG | 0.573124 | tig0018513:+108357 | Msa1367430:CDS |
| ACGGGCATCCTATTCCTCAC+TGG | 0.573439 | tig0018513:+106489 | Msa1367430:five_prime_UTR |
| CTCAGATGGTAAAGATCATG+TGG | 0.575507 | tig0018513:+107538 | Msa1367430:CDS |
| CACACTTGATCATGATACTC+AGG | 0.577347 | tig0018513:+108479 | Msa1367430:CDS |
| TATCACAAGGGAACAGAACA+GGG | 0.582185 | tig0018513:-106514 | None:intergenic |
| CTTCACTAGAACCTTTCTCA+AGG | 0.584604 | tig0018513:+108993 | Msa1367430:three_prime_UTR |
| CCTAATGGAAGGAAATTACA+AGG | 0.585093 | tig0018513:+107751 | Msa1367430:CDS |
| TCTAGTTATAATACCGATGG+GGG | 0.585265 | tig0018513:+106751 | Msa1367430:CDS |
| TCAACTTTCTCTCTATGTAG+AGG | 0.586344 | tig0018513:+108901 | Msa1367430:CDS |
| GCATTATCCCATTCACTGAA+GGG | 0.590706 | tig0018513:-108663 | None:intergenic |
| TTCTAGTTATAATACCGATG+GGG | 0.591385 | tig0018513:+106750 | Msa1367430:CDS |
| CAACTTACCATCAGGTGATG+TGG | 0.598575 | tig0018513:+108747 | Msa1367430:CDS |
| CCCTAAATACAATCCTGCAT+GGG | 0.602674 | tig0018513:+108029 | Msa1367430:CDS |
| GGATGTTGGTCATTTCTCAA+AGG | 0.605842 | tig0018513:+107464 | Msa1367430:CDS |
| GTCTGATACATGAACAGTGA+CGG | 0.610322 | tig0018513:-107728 | None:intergenic |
| TAGCATGTGAAGAAGAGCAC+GGG | 0.610956 | tig0018513:+106471 | Msa1367430:five_prime_UTR |
| TATGGATGGAATTGGTCTCG+AGG | 0.616485 | tig0018513:+108356 | Msa1367430:CDS |
| GCCAACAAAATCATAGCTAG+AGG | 0.617131 | tig0018513:+107985 | Msa1367430:CDS |
| CAACAACACCAACACGAACA+CGG | 0.618184 | tig0018513:+107074 | Msa1367430:CDS |
| TCTGCCTTCATGAGGCTCTG+TGG | 0.618660 | tig0018513:-107920 | None:intergenic |
| TTGGAGGAGGTGATATCACA+AGG | 0.621040 | tig0018513:-106527 | None:intergenic |
| ATGTATCAGACCCTAATGGA+AGG | 0.621861 | tig0018513:+107740 | Msa1367430:CDS |
| TAGTTGACTCTGCCTTCATG+AGG | 0.625434 | tig0018513:-107928 | None:intergenic |
| TGGATAAACTTCTTCAAGAG+TGG | 0.627938 | tig0018513:+108770 | Msa1367430:CDS |
| AATTAAGTCACAGTGTCACA+GGG | 0.628706 | tig0018513:-108942 | None:intergenic |
| TGAATGGTATGGAATGAAGT+AGG | 0.634785 | tig0018513:-106710 | None:intergenic |
| TATGCCACAGAGCCTCATGA+AGG | 0.641188 | tig0018513:+107916 | Msa1367430:CDS |
| TTATCCACCACATCACCTGA+TGG | 0.643051 | tig0018513:-108754 | None:intergenic |
| ATGGCTACTTAACTTAACAC+GGG | 0.644296 | tig0018513:+106609 | Msa1367430:five_prime_UTR |
| CTTACCATCAGGTGATGTGG+TGG | 0.645932 | tig0018513:+108750 | Msa1367430:CDS |
| TAAACAGCAGTACTAGTCCA+AGG | 0.645943 | tig0018513:+106678 | Msa1367430:CDS |
| AGCCATTTACTCACCACCAA+TGG | 0.646406 | tig0018513:+107588 | Msa1367430:CDS |
| ATTCAGTTATGATAAAGGCA+AGG | 0.650648 | tig0018513:+107387 | Msa1367430:CDS |
| GAAGGTATCACAGATGAGCA+TGG | 0.651877 | tig0018513:+108808 | Msa1367430:CDS |
| GTAGCATGTGAAGAAGAGCA+CGG | 0.653426 | tig0018513:+106470 | Msa1367430:five_prime_UTR |
| AGGTGAAGCCGTGTTCGTGT+TGG | 0.662305 | tig0018513:-107082 | None:intergenic |
| GTAAGGTTAAGAACCCATGC+AGG | 0.663112 | tig0018513:-108042 | None:intergenic |
| TAAGCAGTAGAGTCATATAG+GGG | 0.663519 | tig0018513:-106875 | None:intergenic |
| TGACTCTACTGCTTACACTC+AGG | 0.668323 | tig0018513:+106883 | Msa1367430:CDS |
| GCGTTGACGCTTATATCTCA+CGG | 0.669191 | tig0018513:+108304 | Msa1367430:CDS |
| CCAGAGAAGCCACTTTACGG+TGG | 0.680549 | tig0018513:+107021 | Msa1367430:CDS |
| AGAGTTGATAGAGACAGTTG+TGG | 0.708134 | tig0018513:-109026 | None:intergenic |
| AACAGAACAGGGGACCAGTG+AGG | 0.713722 | tig0018513:-106503 | None:intergenic |
| ATCACAAGGGAACAGAACAG+GGG | 0.724966 | tig0018513:-106513 | None:intergenic |
| TGTTGAAATCATTGTCTGTG+AGG | 0.726848 | tig0018513:-108726 | None:intergenic |
| TGGAGGAGGTGATATCACAA+GGG | 0.734851 | tig0018513:-106526 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCTTTTTTTGTTTCATA+TGG | + | tig0018513:106590-106609 | Msa1367430:five_prime_UTR | 15.0% |
| !! | TAATGAATTGAATCAATAAA+AGG | - | tig0018513:106808-106827 | None:intergenic | 15.0% |
| !! | AGAAAAATATATGAATGGTA+TGG | - | tig0018513:106724-106743 | None:intergenic | 20.0% |
| !! | AAGGAAGAAAAATATATGAA+TGG | - | tig0018513:106729-106748 | None:intergenic | 20.0% |
| !!! | GATAGATAATATGTTGTTTT+TGG | - | tig0018513:107652-107671 | None:intergenic | 20.0% |
| !! | TTATTTGTAGGCAATTTATT+TGG | + | tig0018513:108612-108631 | Msa1367430:intron | 20.0% |
| ! | TACTACGTTTGAAAGTTAAT+GGG | - | tig0018513:106569-106588 | None:intergenic | 25.0% |
| ! | TACAGATTCAGTTATGATAA+AGG | + | tig0018513:107382-107401 | Msa1367430:CDS | 25.0% |
| ! | AATGAGACATATAACTGTAT+TGG | + | tig0018513:107422-107441 | Msa1367430:CDS | 25.0% |
| ! | ATGAGACATATAACTGTATT+GGG | + | tig0018513:107423-107442 | Msa1367430:CDS | 25.0% |
| ! | ATATCAAAAGACTTTCCTAT+TGG | + | tig0018513:107796-107815 | Msa1367430:CDS | 25.0% |
| !! | GTATGAATTCTGTTTTGTAT+TGG | - | tig0018513:108119-108138 | None:intergenic | 25.0% |
| ! | ACAAAACAGAATTCATACAT+TGG | + | tig0018513:108121-108140 | Msa1367430:CDS | 25.0% |
| ! | CAAAACAGAATTCATACATT+GGG | + | tig0018513:108122-108141 | Msa1367430:CDS | 25.0% |
| ! | AAGAAATGAAATGTAGCATT+GGG | - | tig0018513:108198-108217 | None:intergenic | 25.0% |
| ! | AAAGAAATGAAATGTAGCAT+TGG | - | tig0018513:108199-108218 | None:intergenic | 25.0% |
| ! | TTCATAAACAAAGTTGCTAA+AGG | - | tig0018513:108243-108262 | None:intergenic | 25.0% |
| ! | ATAAGAGAACTAAGACAATA+TGG | + | tig0018513:108327-108346 | Msa1367430:CDS | 25.0% |
| !!! | AAGACAATATGGTGTTTTTA+TGG | + | tig0018513:108338-108357 | Msa1367430:CDS | 25.0% |
| !! | TTTATTTGGAACAAGTATTG+AGG | + | tig0018513:108626-108645 | Msa1367430:CDS | 25.0% |
| !!! | TTATTTGGAACAAGTATTGA+GGG | + | tig0018513:108627-108646 | Msa1367430:CDS | 25.0% |
| ! | TCTTAGGAGAATATAGAATT+AGG | + | tig0018513:108851-108870 | Msa1367430:CDS | 25.0% |
| ! | CTTAGGAGAATATAGAATTA+GGG | + | tig0018513:108852-108871 | Msa1367430:CDS | 25.0% |
| ! | TTACATGAGCAGTTAAATAA+AGG | + | tig0018513:109057-109076 | Msa1367430:three_prime_UTR | 25.0% |
| TTCTTCACATGCTACAATAT+AGG | - | tig0018513:106465-106484 | None:intergenic | 30.0% | |
| GTACTACGTTTGAAAGTTAA+TGG | - | tig0018513:106570-106589 | None:intergenic | 30.0% | |
| TATGGCTACTTAACTTAACA+CGG | + | tig0018513:106608-106627 | Msa1367430:five_prime_UTR | 30.0% | |
| TCGGTATTATAACTAGAAGA+AGG | - | tig0018513:106748-106767 | None:intergenic | 30.0% | |
| ! | TCTTCTAGTTATAATACCGA+TGG | + | tig0018513:106748-106767 | Msa1367430:CDS | 30.0% |
| ! | CTTCTAGTTATAATACCGAT+GGG | + | tig0018513:106749-106768 | Msa1367430:CDS | 30.0% |
| ! | TTCTAGTTATAATACCGATG+GGG | + | tig0018513:106750-106769 | Msa1367430:CDS | 30.0% |
| AGATTATAGAAGACAAGTGA+AGG | - | tig0018513:107105-107124 | None:intergenic | 30.0% | |
| ! | GACACTATCTATTCTTTTTC+TGG | + | tig0018513:107132-107151 | Msa1367430:intron | 30.0% |
| ATTAAAAATGATTCCGTTGC+CGG | + | tig0018513:107219-107238 | Msa1367430:intron | 30.0% | |
| GGATTATTGTTGATGTCATT+GGG | + | tig0018513:107300-107319 | Msa1367430:intron | 30.0% | |
| ATTCAGTTATGATAAAGGCA+AGG | + | tig0018513:107387-107406 | Msa1367430:CDS | 30.0% | |
| AAGATGGTAGATGAATTTGA+AGG | - | tig0018513:107509-107528 | None:intergenic | 30.0% | |
| !! | CAGTGTTGATGATATATTGT+TGG | - | tig0018513:107622-107641 | None:intergenic | 30.0% |
| CTTGTAATTTCCTTCCATTA+GGG | - | tig0018513:107753-107772 | None:intergenic | 30.0% | |
| TTCACAAACCAATTCTGATA+TGG | - | tig0018513:107856-107875 | None:intergenic | 30.0% | |
| !! | ATCAGAATTGGTTTGTGAAA+CGG | + | tig0018513:107857-107876 | Msa1367430:CDS | 30.0% |
| ! | TCTTTGAAAACGAGCTTAAA+TGG | + | tig0018513:107893-107912 | Msa1367430:CDS | 30.0% |
| CTCTAACAAATTGCATCATT+TGG | - | tig0018513:107966-107985 | None:intergenic | 30.0% | |
| ! | TAGAGGACACAATATTTTCT+GGG | + | tig0018513:108002-108021 | Msa1367430:CDS | 30.0% |
| ! | ACTTTGATTTCTACGAACAA+AGG | + | tig0018513:108166-108185 | Msa1367430:CDS | 30.0% |
| TGCTACATTTCATTTCTTTG+AGG | + | tig0018513:108200-108219 | Msa1367430:CDS | 30.0% | |
| !! | CAATATGGTGTTTTTATGGA+TGG | + | tig0018513:108342-108361 | Msa1367430:CDS | 30.0% |
| ! | TGCCTTCATTCTTTATTTGT+AGG | + | tig0018513:108600-108619 | Msa1367430:intron | 30.0% |
| TGCCTACAAATAAAGAATGA+AGG | - | tig0018513:108605-108624 | None:intergenic | 30.0% | |
| ! | ATGGTTCACATAGCTTTTAT+GGG | + | tig0018513:108827-108846 | Msa1367430:CDS | 30.0% |
| ! | TTAATGGGATTGGATTGGAT+TGG | - | tig0018513:106554-106573 | None:intergenic | 35.0% |
| GAAAGTTAATGGGATTGGAT+TGG | - | tig0018513:106559-106578 | None:intergenic | 35.0% | |
| CGTTTGAAAGTTAATGGGAT+TGG | - | tig0018513:106564-106583 | None:intergenic | 35.0% | |
| ATGGCTACTTAACTTAACAC+GGG | + | tig0018513:106609-106628 | Msa1367430:five_prime_UTR | 35.0% | |
| TGAATGGTATGGAATGAAGT+AGG | - | tig0018513:106713-106732 | None:intergenic | 35.0% | |
| TCTAGTTATAATACCGATGG+GGG | + | tig0018513:106751-106770 | Msa1367430:CDS | 35.0% | |
| !! | CGATATTGTTTTGTTGCAGA+TGG | + | tig0018513:106851-106870 | Msa1367430:intron | 35.0% |
| TAAGCAGTAGAGTCATATAG+GGG | - | tig0018513:106878-106897 | None:intergenic | 35.0% | |
| GTAAGCAGTAGAGTCATATA+GGG | - | tig0018513:106879-106898 | None:intergenic | 35.0% | |
| TGTAAGCAGTAGAGTCATAT+AGG | - | tig0018513:106880-106899 | None:intergenic | 35.0% | |
| TTAAAAATGATTCCGTTGCC+GGG | + | tig0018513:107220-107239 | Msa1367430:intron | 35.0% | |
| ATAATCCGTTGTAGTCTAGT+TGG | - | tig0018513:107287-107306 | None:intergenic | 35.0% | |
| CGGATTATTGTTGATGTCAT+TGG | + | tig0018513:107299-107318 | Msa1367430:intron | 35.0% | |
| ATCTGAGTTGTGAAAGAAGA+TGG | - | tig0018513:107525-107544 | None:intergenic | 35.0% | |
| ATCTTCTTTCACAACTCAGA+TGG | + | tig0018513:107524-107543 | Msa1367430:CDS | 35.0% | |
| ! | ATTGTTGGTTGATTCTCCAT+TGG | - | tig0018513:107607-107626 | None:intergenic | 35.0% |
| CCTTGTAATTTCCTTCCATT+AGG | - | tig0018513:107754-107773 | None:intergenic | 35.0% | |
| CCTAATGGAAGGAAATTACA+AGG | + | tig0018513:107751-107770 | Msa1367430:CDS | 35.0% | |
| ATATGGTATGTTGCCAAGAA+TGG | - | tig0018513:107839-107858 | None:intergenic | 35.0% | |
| GCAACATACCATATCAGAAT+TGG | + | tig0018513:107845-107864 | Msa1367430:CDS | 35.0% | |
| ! | TCCTCTAGCTATGATTTTGT+TGG | - | tig0018513:107989-108008 | None:intergenic | 35.0% |
| ! | CTAGAGGACACAATATTTTC+TGG | + | tig0018513:108001-108020 | Msa1367430:CDS | 35.0% |
| ATCTTAACTGTGTACCTGTA+AGG | - | tig0018513:108062-108081 | None:intergenic | 35.0% | |
| !! | GGTGTTTTTATGGATGGAAT+TGG | + | tig0018513:108348-108367 | Msa1367430:CDS | 35.0% |
| GCTCTTATAAGTGGAAGATT+TGG | - | tig0018513:108396-108415 | None:intergenic | 35.0% | |
| ! | TCTAGGATAGCTCTTATAAG+TGG | - | tig0018513:108405-108424 | None:intergenic | 35.0% |
| AAGAGCTATCCTAGACAAAT+TGG | + | tig0018513:108410-108429 | Msa1367430:CDS | 35.0% | |
| ATCAATCTCAGTAAGCCAAA+CGG | - | tig0018513:108451-108470 | None:intergenic | 35.0% | |
| TGTTGAAATCATTGTCTGTG+AGG | - | tig0018513:108729-108748 | None:intergenic | 35.0% | |
| GATTTCAACAACTTACCATC+AGG | + | tig0018513:108739-108758 | Msa1367430:CDS | 35.0% | |
| TGGATAAACTTCTTCAAGAG+TGG | + | tig0018513:108770-108789 | Msa1367430:CDS | 35.0% | |
| ! | CATGGTTCACATAGCTTTTA+TGG | + | tig0018513:108826-108845 | Msa1367430:CDS | 35.0% |
| ! | CATAGCTTTTATGGGTTCTT+AGG | + | tig0018513:108835-108854 | Msa1367430:CDS | 35.0% |
| TCAACTTTCTCTCTATGTAG+AGG | + | tig0018513:108901-108920 | Msa1367430:CDS | 35.0% | |
| AATTAAGTCACAGTGTCACA+GGG | - | tig0018513:108945-108964 | None:intergenic | 35.0% | |
| AAATTAAGTCACAGTGTCAC+AGG | - | tig0018513:108946-108965 | None:intergenic | 35.0% | |
| ! | AGGTTCTAGTGAAGAAGTTA+AGG | - | tig0018513:108987-109006 | None:intergenic | 35.0% |
| GTTACAATTCTCCTTGAGAA+AGG | - | tig0018513:109007-109026 | None:intergenic | 35.0% | |
| TATCACAAGGGAACAGAACA+GGG | - | tig0018513:106517-106536 | None:intergenic | 40.0% | |
| ATATCACAAGGGAACAGAAC+AGG | - | tig0018513:106518-106537 | None:intergenic | 40.0% | |
| ! | ATTGGATTGGATTGGATTGG+AGG | - | tig0018513:106546-106565 | None:intergenic | 40.0% |
| TAAACAGCAGTACTAGTCCA+AGG | + | tig0018513:106678-106697 | Msa1367430:CDS | 40.0% | |
| AAAGAAGAAGAAACCCCCAT+CGG | - | tig0018513:106767-106786 | None:intergenic | 40.0% | |
| GGGGTTTCTTCTTCTTTCTA+TGG | + | tig0018513:106770-106789 | Msa1367430:CDS | 40.0% | |
| GTCTAGTTGGTTAGGATACT+CGG | - | tig0018513:107274-107293 | None:intergenic | 40.0% | |
| CCTAACCAACTAGACTACAA+CGG | + | tig0018513:107279-107298 | Msa1367430:intron | 40.0% | |
| CACGTCAGCATATATAACGA+TGG | - | tig0018513:107333-107352 | None:intergenic | 40.0% | |
| CATCGTTATATATGCTGACG+TGG | + | tig0018513:107331-107350 | Msa1367430:intron | 40.0% | |
| ! | TTTTAGCCAAACGTGGATGT+TGG | + | tig0018513:107450-107469 | Msa1367430:CDS | 40.0% |
| AAATGACCAACATCCACGTT+TGG | - | tig0018513:107459-107478 | None:intergenic | 40.0% | |
| GGATGTTGGTCATTTCTCAA+AGG | + | tig0018513:107464-107483 | Msa1367430:CDS | 40.0% | |
| TGTTGGTCATTTCTCAAAGG+TGG | + | tig0018513:107467-107486 | Msa1367430:CDS | 40.0% | |
| CTCAGATGGTAAAGATCATG+TGG | + | tig0018513:107538-107557 | Msa1367430:CDS | 40.0% | |
| GTCTGATACATGAACAGTGA+CGG | - | tig0018513:107731-107750 | None:intergenic | 40.0% | |
| GTTCATGTATCAGACCCTAA+TGG | + | tig0018513:107736-107755 | Msa1367430:CDS | 40.0% | |
| ATGTATCAGACCCTAATGGA+AGG | + | tig0018513:107740-107759 | Msa1367430:CDS | 40.0% | |
| GCCAACAAAATCATAGCTAG+AGG | + | tig0018513:107985-108004 | Msa1367430:CDS | 40.0% | |
| ACCCTAAATACAATCCTGCA+TGG | + | tig0018513:108028-108047 | Msa1367430:CDS | 40.0% | |
| CCCATGCAGGATTGTATTTA+GGG | - | tig0018513:108032-108051 | None:intergenic | 40.0% | |
| CCCTAAATACAATCCTGCAT+GGG | + | tig0018513:108029-108048 | Msa1367430:CDS | 40.0% | |
| ACCCATGCAGGATTGTATTT+AGG | - | tig0018513:108033-108052 | None:intergenic | 40.0% | |
| GATTTCTACGAACAAAGGCT+TGG | + | tig0018513:108171-108190 | Msa1367430:CDS | 40.0% | |
| CTAGTGTTGCCAATTTGTCT+AGG | - | tig0018513:108422-108441 | None:intergenic | 40.0% | |
| TCAATCTCAGTAAGCCAAAC+GGG | - | tig0018513:108450-108469 | None:intergenic | 40.0% | |
| CACACTTGATCATGATACTC+AGG | + | tig0018513:108479-108498 | Msa1367430:CDS | 40.0% | |
| TTGATCATGATACTCAGGTG+AGG | + | tig0018513:108484-108503 | Msa1367430:intron | 40.0% | |
| !! | TTGGAACAAGTATTGAGGGA+AGG | + | tig0018513:108631-108650 | Msa1367430:CDS | 40.0% |
| GCATTATCCCATTCACTGAA+GGG | - | tig0018513:108666-108685 | None:intergenic | 40.0% | |
| AGCATTATCCCATTCACTGA+AGG | - | tig0018513:108667-108686 | None:intergenic | 40.0% | |
| CAGTGAATGGGATAATGCTT+TGG | + | tig0018513:108668-108687 | Msa1367430:CDS | 40.0% | |
| CTTCACTAGAACCTTTCTCA+AGG | + | tig0018513:108993-109012 | Msa1367430:three_prime_UTR | 40.0% | |
| !! | AGAGTTGATAGAGACAGTTG+TGG | - | tig0018513:109029-109048 | None:intergenic | 40.0% |
| CTGTCTCTATCAACTCTGAT+TGG | + | tig0018513:109032-109051 | Msa1367430:three_prime_UTR | 40.0% | |
| AGTCACAGTCACGTGAGATT+TGG | + | tig0018513:106418-106437 | Msa1367430:five_prime_UTR | 45.0% | |
| GTAGCATGTGAAGAAGAGCA+CGG | + | tig0018513:106470-106489 | Msa1367430:five_prime_UTR | 45.0% | |
| ! | TAGCATGTGAAGAAGAGCAC+GGG | + | tig0018513:106471-106490 | Msa1367430:five_prime_UTR | 45.0% |
| ATCACAAGGGAACAGAACAG+GGG | - | tig0018513:106516-106535 | None:intergenic | 45.0% | |
| TGGAGGAGGTGATATCACAA+GGG | - | tig0018513:106529-106548 | None:intergenic | 45.0% | |
| TTGGAGGAGGTGATATCACA+AGG | - | tig0018513:106530-106549 | None:intergenic | 45.0% | |
| ! | GGGATTGGATTGGATTGGAT+TGG | - | tig0018513:106549-106568 | None:intergenic | 45.0% |
| GAAGTAGGTTGCATCATCCT+TGG | - | tig0018513:106698-106717 | None:intergenic | 45.0% | |
| TGACTCTACTGCTTACACTC+AGG | + | tig0018513:106883-106902 | Msa1367430:CDS | 45.0% | |
| ! | CATCCAGAGAAGCCACTTTA+CGG | + | tig0018513:107018-107037 | Msa1367430:CDS | 45.0% |
| CAACAACACCAACACGAACA+CGG | + | tig0018513:107074-107093 | Msa1367430:CDS | 45.0% | |
| CCGTTGTAGTCTAGTTGGTT+AGG | - | tig0018513:107282-107301 | None:intergenic | 45.0% | |
| AGCCATTTACTCACCACCAA+TGG | + | tig0018513:107588-107607 | Msa1367430:CDS | 45.0% | |
| !! | CTCCATTGGTGGTGAGTAAA+TGG | - | tig0018513:107593-107612 | None:intergenic | 45.0% |
| ! | GTTGGTTGATTCTCCATTGG+TGG | - | tig0018513:107604-107623 | None:intergenic | 45.0% |
| ! | TTTGCTATCGCAGAGCCAAT+AGG | - | tig0018513:107814-107833 | None:intergenic | 45.0% |
| GCGATAGCAAAGACCATTCT+TGG | + | tig0018513:107823-107842 | Msa1367430:CDS | 45.0% | |
| ! | TAGTTGACTCTGCCTTCATG+AGG | - | tig0018513:107931-107950 | None:intergenic | 45.0% |
| GTAAGGTTAAGAACCCATGC+AGG | - | tig0018513:108045-108064 | None:intergenic | 45.0% | |
| GCATGGGTTCTTAACCTTAC+AGG | + | tig0018513:108045-108064 | Msa1367430:CDS | 45.0% | |
| ! | GCGTTGACGCTTATATCTCA+CGG | + | tig0018513:108304-108323 | Msa1367430:CDS | 45.0% |
| ! | TATGGATGGAATTGGTCTCG+AGG | + | tig0018513:108356-108375 | Msa1367430:CDS | 45.0% |
| ! | ATGGATGGAATTGGTCTCGA+GGG | + | tig0018513:108357-108376 | Msa1367430:CDS | 45.0% |
| CAACACTAGATCTTCCCGTT+TGG | + | tig0018513:108433-108452 | Msa1367430:CDS | 45.0% | |
| TTCTCACACCCTTCAGTGAA+TGG | + | tig0018513:108655-108674 | Msa1367430:CDS | 45.0% | |
| TCTCACACCCTTCAGTGAAT+GGG | + | tig0018513:108656-108675 | Msa1367430:CDS | 45.0% | |
| TGGACAGCACTTCATCCATA+TGG | + | tig0018513:108688-108707 | Msa1367430:CDS | 45.0% | |
| GGACAGCACTTCATCCATAT+GGG | + | tig0018513:108689-108708 | Msa1367430:CDS | 45.0% | |
| ! | CACATTTGGTAGCACCCATA+TGG | - | tig0018513:108706-108725 | None:intergenic | 45.0% |
| CATTGTCTGTGAGGCACATT+TGG | - | tig0018513:108720-108739 | None:intergenic | 45.0% | |
| CAACTTACCATCAGGTGATG+TGG | + | tig0018513:108747-108766 | Msa1367430:CDS | 45.0% | |
| TTATCCACCACATCACCTGA+TGG | - | tig0018513:108757-108776 | None:intergenic | 45.0% | |
| CTTCTTCAAGAGTGGCAAAC+TGG | + | tig0018513:108778-108797 | Msa1367430:CDS | 45.0% | |
| !! | GAAGGTATCACAGATGAGCA+TGG | + | tig0018513:108808-108827 | Msa1367430:CDS | 45.0% |
| ! | GGATTGGATTGGATTGGAGG+AGG | - | tig0018513:106543-106562 | None:intergenic | 50.0% |
| CTACTGCTTACACTCAGGTG+AGG | + | tig0018513:106888-106907 | Msa1367430:intron | 50.0% | |
| TGACGTGGCTGCTACAGTAT+GGG | + | tig0018513:107346-107365 | Msa1367430:intron | 50.0% | |
| !! | GGGACAGTTTTAGCCAAACG+TGG | + | tig0018513:107443-107462 | Msa1367430:CDS | 50.0% |
| TATGCCACAGAGCCTCATGA+AGG | + | tig0018513:107916-107935 | Msa1367430:CDS | 50.0% | |
| GTAGCTAGCTAGCTAGCTAG+AGG | + | tig0018513:108506-108525 | Msa1367430:intron | 50.0% | |
| CTTACCATCAGGTGATGTGG+TGG | + | tig0018513:108750-108769 | Msa1367430:CDS | 50.0% | |
| TGGCAAACTGGTCGTGTAGA+AGG | + | tig0018513:108790-108809 | Msa1367430:CDS | 50.0% | |
| ACGGGCATCCTATTCCTCAC+TGG | + | tig0018513:106489-106508 | Msa1367430:five_prime_UTR | 55.0% | |
| ACAGGGGACCAGTGAGGAAT+AGG | - | tig0018513:106500-106519 | None:intergenic | 55.0% | |
| AACAGAACAGGGGACCAGTG+AGG | - | tig0018513:106506-106525 | None:intergenic | 55.0% | |
| CCACCGTAAAGTGGCTTCTC+TGG | - | tig0018513:107024-107043 | None:intergenic | 55.0% | |
| ! | CCAGAGAAGCCACTTTACGG+TGG | + | tig0018513:107021-107040 | Msa1367430:CDS | 55.0% |
| ! | GAGAAGCCACTTTACGGTGG+AGG | + | tig0018513:107024-107043 | Msa1367430:CDS | 55.0% |
| ! | AAGCCACTTTACGGTGGAGG+AGG | + | tig0018513:107027-107046 | Msa1367430:CDS | 55.0% |
| AGGTGAAGCCGTGTTCGTGT+TGG | - | tig0018513:107085-107104 | None:intergenic | 55.0% | |
| CTGACGTGGCTGCTACAGTA+TGG | + | tig0018513:107345-107364 | Msa1367430:intron | 55.0% | |
| GGCTGCTACAGTATGGGTGA+AGG | + | tig0018513:107352-107371 | Msa1367430:intron | 55.0% | |
| TCTGCCTTCATGAGGCTCTG+TGG | - | tig0018513:107923-107942 | None:intergenic | 55.0% | |
| CCTCCTCCTCCACCGTAAAG+TGG | - | tig0018513:107033-107052 | None:intergenic | 60.0% | |
| CCACTTTACGGTGGAGGAGG+AGG | + | tig0018513:107030-107049 | Msa1367430:CDS | 60.0% | |
| AGAGACCCGGGTTCAAGTCC+CGG | - | tig0018513:107241-107260 | None:intergenic | 60.0% | |
| GGACTTGAACCCGGGTCTCT+CGG | + | tig0018513:107241-107260 | Msa1367430:intron | 60.0% | |
| GACTTGAACCCGGGTCTCTC+GGG | + | tig0018513:107242-107261 | Msa1367430:intron | 60.0% | |
| CCGGGTTCAAGTCCCGGCAA+CGG | - | tig0018513:107235-107254 | None:intergenic | 65.0% | |
| CCGTTGCCGGGACTTGAACC+CGG | + | tig0018513:107232-107251 | Msa1367430:intron | 65.0% | |
| CGTTGCCGGGACTTGAACCC+GGG | + | tig0018513:107233-107252 | Msa1367430:intron | 65.0% | |
| GGCTCTCACCCGAGAGACCC+GGG | - | tig0018513:107253-107272 | None:intergenic | 70.0% | |
| CGGCTCTCACCCGAGAGACC+CGG | - | tig0018513:107254-107273 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018513 | gene | 106388 | 109191 | 106388 | ID=Msa1367430;Name=Msa1367430 |
| tig0018513 | mRNA | 106388 | 109191 | 106388 | ID=Msa1367430-mRNA-1;Parent=Msa1367430;Name=Msa1367430-mRNA-1;_AED=0.09;_eAED=0.09;_QI=256|0.8|0.66|1|1|1|6|234|557 |
| tig0018513 | exon | 106388 | 106791 | 106388 | ID=Msa1367430-mRNA-1:exon:15551;Parent=Msa1367430-mRNA-1 |
| tig0018513 | exon | 106870 | 106904 | 106870 | ID=Msa1367430-mRNA-1:exon:15552;Parent=Msa1367430-mRNA-1 |
| tig0018513 | exon | 107009 | 107110 | 107009 | ID=Msa1367430-mRNA-1:exon:15553;Parent=Msa1367430-mRNA-1 |
| tig0018513 | exon | 107374 | 107640 | 107374 | ID=Msa1367430-mRNA-1:exon:15554;Parent=Msa1367430-mRNA-1 |
| tig0018513 | exon | 107715 | 108500 | 107715 | ID=Msa1367430-mRNA-1:exon:15555;Parent=Msa1367430-mRNA-1 |
| tig0018513 | exon | 108622 | 109191 | 108622 | ID=Msa1367430-mRNA-1:exon:15556;Parent=Msa1367430-mRNA-1 |
| tig0018513 | five_prime_UTR | 106388 | 106643 | 106388 | ID=Msa1367430-mRNA-1:five_prime_utr;Parent=Msa1367430-mRNA-1 |
| tig0018513 | CDS | 106644 | 106791 | 106644 | ID=Msa1367430-mRNA-1:cds;Parent=Msa1367430-mRNA-1 |
| tig0018513 | CDS | 106870 | 106904 | 106870 | ID=Msa1367430-mRNA-1:cds;Parent=Msa1367430-mRNA-1 |
| tig0018513 | CDS | 107009 | 107110 | 107009 | ID=Msa1367430-mRNA-1:cds;Parent=Msa1367430-mRNA-1 |
| tig0018513 | CDS | 107374 | 107640 | 107374 | ID=Msa1367430-mRNA-1:cds;Parent=Msa1367430-mRNA-1 |
| tig0018513 | CDS | 107715 | 108500 | 107715 | ID=Msa1367430-mRNA-1:cds;Parent=Msa1367430-mRNA-1 |
| tig0018513 | CDS | 108622 | 108957 | 108622 | ID=Msa1367430-mRNA-1:cds;Parent=Msa1367430-mRNA-1 |
| tig0018513 | three_prime_UTR | 108958 | 109191 | 108958 | ID=Msa1367430-mRNA-1:three_prime_utr;Parent=Msa1367430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
