Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365000 | XP_024635160.1 | 94.139 | 563 | 21 | 7 | 16 | 571 | 2 | 559 | 0.0 | 1065 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365000 | sp|Q680B7|XYN4_ARATH | 35.622 | 539 | 317 | 12 | 50 | 567 | 32 | 561 | 1.23e-100 | 319 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365000 | A0A396J1W7 | 94.139 | 563 | 21 | 7 | 16 | 571 | 2 | 559 | 0.0 | 1065 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1365000 | Msa1365870 | 0.803997 | 2.668649e-49 | -8.615850e-47 |
| Msa1365000 | Msa1367430 | 0.954985 | 8.570941e-113 | -8.615850e-47 |
| Msa1365000 | Msa1417630 | 0.957552 | 2.059915e-115 | -8.615850e-47 |
| Msa1365000 | Msa1435580 | 0.953010 | 7.011221e-111 | -8.615850e-47 |
| Msa1365000 | Msa1438360 | 0.804608 | 1.991296e-49 | -8.615850e-47 |
| Msa0607600 | Msa1365000 | -0.815014 | 1.148141e-51 | -8.615850e-47 |
| Msa0639370 | Msa1365000 | 0.811112 | 8.238011e-51 | -8.615850e-47 |
| Msa0661470 | Msa1365000 | 0.803514 | 3.361871e-49 | -8.615850e-47 |
| Msa0667970 | Msa1365000 | 0.808690 | 2.735948e-50 | -8.615850e-47 |
| Msa0687860 | Msa1365000 | -0.818949 | 1.500470e-52 | -8.615850e-47 |
| Msa0139900 | Msa1365000 | 0.804441 | 2.157169e-49 | -8.615850e-47 |
| Msa1235890 | Msa1365000 | 0.805603 | 1.232641e-49 | -8.615850e-47 |
| Msa1315980 | Msa1365000 | 0.814510 | 1.484935e-51 | -8.615850e-47 |
| Msa0386270 | Msa1365000 | 0.818970 | 1.484724e-52 | -8.615850e-47 |
| Msa0436090 | Msa1365000 | 0.805315 | 1.416847e-49 | -8.615850e-47 |
| Msa1018790 | Msa1365000 | 0.800327 | 1.517864e-48 | -8.615850e-47 |
| Msa1134400 | Msa1365000 | 0.804379 | 2.221946e-49 | -8.615850e-47 |
| Msa1175750 | Msa1365000 | 0.800018 | 1.755007e-48 | -8.615850e-47 |
| Msa1197110 | Msa1365000 | 0.804546 | 2.051409e-49 | -8.615850e-47 |
| Msa0506760 | Msa1365000 | 0.804547 | 2.050222e-49 | -8.615850e-47 |
| Msa0524230 | Msa1365000 | 0.959062 | 4.968086e-117 | -8.615850e-47 |
| Msa0532840 | Msa1365000 | 0.806543 | 7.815008e-50 | -8.615850e-47 |
| Msa0533010 | Msa1365000 | 0.800167 | 1.636741e-48 | -8.615850e-47 |
| Msa0538570 | Msa1365000 | 0.806633 | 7.480524e-50 | -8.615850e-47 |
| Msa0594390 | Msa1365000 | 0.811903 | 5.545528e-51 | -8.615850e-47 |
| Msa0931480 | Msa1365000 | 0.803920 | 2.768876e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365000 | MtrunA17_Chr3g0145541 | 94.139 | 563 | 21 | 7 | 16 | 571 | 2 | 559 | 0.0 | 1065 |
| Msa1365000 | MtrunA17_Chr5g0421191 | 39.241 | 553 | 291 | 9 | 29 | 550 | 4 | 542 | 1.98e-131 | 395 |
| Msa1365000 | MtrunA17_Chr4g0037551 | 40.113 | 531 | 277 | 13 | 57 | 558 | 32 | 550 | 2.50e-128 | 387 |
| Msa1365000 | MtrunA17_Chr7g0223191 | 39.155 | 521 | 275 | 8 | 58 | 547 | 4 | 513 | 1.23e-126 | 382 |
| Msa1365000 | MtrunA17_Chr1g0207241 | 38.910 | 532 | 281 | 11 | 31 | 530 | 23 | 542 | 1.49e-115 | 355 |
| Msa1365000 | MtrunA17_Chr1g0207201 | 39.648 | 454 | 258 | 7 | 101 | 547 | 2 | 446 | 4.10e-111 | 340 |
| Msa1365000 | MtrunA17_Chr1g0207211 | 36.911 | 531 | 295 | 11 | 50 | 547 | 31 | 554 | 2.86e-110 | 341 |
| Msa1365000 | MtrunA17_Chr1g0207231 | 37.526 | 477 | 280 | 7 | 101 | 567 | 2 | 470 | 1.15e-109 | 336 |
| Msa1365000 | MtrunA17_Chr3g0135341 | 33.714 | 525 | 308 | 14 | 62 | 571 | 241 | 740 | 3.04e-77 | 259 |
| Msa1365000 | MtrunA17_Chr1g0151951 | 32.079 | 505 | 322 | 9 | 76 | 571 | 438 | 930 | 6.40e-76 | 259 |
| Msa1365000 | MtrunA17_Chr4g0068081 | 31.088 | 193 | 99 | 4 | 327 | 519 | 1 | 159 | 6.11e-22 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365000 | AT4G38650.1 | 65.434 | 541 | 180 | 4 | 38 | 571 | 22 | 562 | 0.0 | 754 |
| Msa1365000 | AT4G38300.1 | 71.483 | 263 | 64 | 2 | 200 | 461 | 12 | 264 | 1.44e-137 | 400 |
| Msa1365000 | AT4G33840.1 | 37.925 | 559 | 298 | 11 | 50 | 571 | 25 | 571 | 5.28e-131 | 395 |
| Msa1365000 | AT4G33830.1 | 38.698 | 553 | 293 | 11 | 50 | 567 | 26 | 567 | 1.53e-128 | 389 |
| Msa1365000 | AT4G33860.1 | 39.130 | 529 | 283 | 10 | 50 | 547 | 25 | 545 | 6.15e-128 | 387 |
| Msa1365000 | AT2G14690.1 | 35.622 | 539 | 317 | 12 | 50 | 567 | 32 | 561 | 1.25e-101 | 319 |
| Msa1365000 | AT4G33810.1 | 36.674 | 469 | 280 | 10 | 101 | 558 | 49 | 511 | 7.66e-100 | 313 |
| Msa1365000 | AT4G33810.5 | 36.674 | 469 | 280 | 10 | 101 | 558 | 49 | 511 | 7.66e-100 | 313 |
| Msa1365000 | AT4G33810.2 | 36.674 | 469 | 280 | 10 | 101 | 558 | 89 | 551 | 1.93e-99 | 313 |
| Msa1365000 | AT4G33810.3 | 36.674 | 469 | 280 | 10 | 101 | 558 | 89 | 551 | 1.93e-99 | 313 |
| Msa1365000 | AT4G33810.4 | 36.674 | 469 | 280 | 10 | 101 | 558 | 89 | 551 | 1.93e-99 | 313 |
| Msa1365000 | AT4G33820.1 | 37.063 | 429 | 258 | 7 | 101 | 523 | 89 | 511 | 4.37e-93 | 296 |
| Msa1365000 | AT1G58370.1 | 32.016 | 506 | 322 | 10 | 76 | 571 | 421 | 914 | 1.96e-78 | 266 |
| Msa1365000 | AT1G58370.2 | 32.016 | 506 | 322 | 10 | 76 | 571 | 449 | 942 | 3.89e-78 | 265 |
| Msa1365000 | AT1G10050.2 | 33.543 | 477 | 301 | 10 | 102 | 571 | 596 | 1063 | 1.27e-73 | 254 |
| Msa1365000 | AT1G10050.1 | 33.543 | 477 | 301 | 10 | 102 | 571 | 596 | 1063 | 1.27e-73 | 254 |
| Msa1365000 | AT1G10050.3 | 33.543 | 477 | 301 | 10 | 102 | 571 | 628 | 1095 | 1.94e-73 | 254 |
| Msa1365000 | AT4G08160.1 | 31.335 | 517 | 323 | 11 | 62 | 562 | 240 | 740 | 3.23e-69 | 238 |
| Msa1365000 | AT4G08160.2 | 33.489 | 427 | 266 | 8 | 62 | 479 | 240 | 657 | 1.12e-62 | 218 |
Find 142 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGGAGAATATAGAATT+AGG | 0.197889 | tig0018197:-49387 | Msa1365000:CDS |
| TTATTTGTAGGCAATTTATT+TGG | 0.199684 | tig0018197:-49626 | Msa1365000:intron |
| ACCCATGCAGGATTGTATTT+AGG | 0.215174 | tig0018197:+50208 | None:intergenic |
| GTACTACGTTTGAAAGTTAA+TGG | 0.228244 | tig0018197:+51662 | None:intergenic |
| GGGGTTTCTTCTTCTTTCTA+TGG | 0.261359 | tig0018197:-51467 | Msa1365000:intron |
| CCCATGCAGGATTGTATTTA+GGG | 0.265487 | tig0018197:+50209 | None:intergenic |
| TCTTTGAAAACGAGCTTAAA+TGG | 0.282741 | tig0018197:-50345 | Msa1365000:CDS |
| GCATGGGTTCTTAACCTTAC+AGG | 0.285919 | tig0018197:-50193 | Msa1365000:CDS |
| CTCCATTGGTGGTGAGTAAA+TGG | 0.299076 | tig0018197:+50648 | None:intergenic |
| CTCTAACAAATTGCATCATT+TGG | 0.305368 | tig0018197:+50275 | None:intergenic |
| CCTTGTAATTTCCTTCCATT+AGG | 0.307008 | tig0018197:+50487 | None:intergenic |
| TTCACAAACCAATTCTGATA+TGG | 0.315882 | tig0018197:+50385 | None:intergenic |
| AAGAGCTATCCTAGACAAAT+TGG | 0.323111 | tig0018197:-49828 | Msa1365000:CDS |
| TGTAAGCAGTAGAGTCATAT+AGG | 0.332357 | tig0018197:+51360 | None:intergenic |
| GCGATAGCAAAGACCATTCT+TGG | 0.334413 | tig0018197:-50415 | Msa1365000:CDS |
| CTTGTAATTTCCTTCCATTA+GGG | 0.341062 | tig0018197:+50488 | None:intergenic |
| CATTGTCTGTGAGGCACATT+TGG | 0.350045 | tig0018197:+49521 | None:intergenic |
| ATATCAAAAGACTTTCCTAT+TGG | 0.362210 | tig0018197:-50442 | Msa1365000:CDS |
| TTACATGAGCAGTTAAATAA+AGG | 0.364013 | tig0018197:-49181 | Msa1365000:three_prime_UTR |
| GCAACATACCATATCAGAAT+TGG | 0.364428 | tig0018197:-50393 | Msa1365000:CDS |
| GTAAGCAGTAGAGTCATATA+GGG | 0.368725 | tig0018197:+51361 | None:intergenic |
| GCTCTTATAAGTGGAAGATT+TGG | 0.368945 | tig0018197:+49845 | None:intergenic |
| CCACCGTAAAGTGGCTTCTC+TGG | 0.371358 | tig0018197:+51216 | None:intergenic |
| ATGAGACATATAACTGTATT+GGG | 0.377080 | tig0018197:-50815 | Msa1365000:CDS |
| TACAGATTCAGTTATGATAA+AGG | 0.377300 | tig0018197:-50856 | Msa1365000:CDS |
| TACTACGTTTGAAAGTTAAT+GGG | 0.377977 | tig0018197:+51663 | None:intergenic |
| TGGACAGCACTTCATCCATA+TGG | 0.380084 | tig0018197:-49550 | Msa1365000:CDS |
| AGTCACAGTCACGTGAGATT+TGG | 0.382876 | tig0018197:-51811 | Msa1365000:five_prime_UTR |
| CGTTTGAAAGTTAATGGGAT+TGG | 0.383246 | tig0018197:+51668 | None:intergenic |
| AATGAGACATATAACTGTAT+TGG | 0.393839 | tig0018197:-50816 | Msa1365000:CDS |
| CATCCAGAGAAGCCACTTTA+CGG | 0.403538 | tig0018197:-51219 | Msa1365000:CDS |
| CTTAGGAGAATATAGAATTA+GGG | 0.404134 | tig0018197:-49386 | Msa1365000:CDS |
| ACAGGGGACCAGTGAGGAAT+AGG | 0.404498 | tig0018197:+51732 | None:intergenic |
| AGGTTCTAGTGAAGAAGTTA+AGG | 0.410579 | tig0018197:+49254 | None:intergenic |
| ATCAGAATTGGTTTGTGAAA+CGG | 0.414114 | tig0018197:-50381 | Msa1365000:CDS |
| TGGCAAACTGGTCGTGTAGA+AGG | 0.419661 | tig0018197:-49448 | Msa1365000:CDS |
| CTTCTTCAAGAGTGGCAAAC+TGG | 0.421800 | tig0018197:-49460 | Msa1365000:CDS |
| CAGTGAATGGGATAATGCTT+TGG | 0.423472 | tig0018197:-49570 | Msa1365000:CDS |
| TGAACTAAGTGATGTTAATC+TGG | 0.429828 | tig0018197:-51854 | None:intergenic |
| ATTGGATTGGATTGGATTGG+AGG | 0.432882 | tig0018197:+51686 | None:intergenic |
| TTCTCACACCCTTCAGTGAA+TGG | 0.434692 | tig0018197:-49583 | Msa1365000:CDS |
| ATATCACAAGGGAACAGAAC+AGG | 0.434939 | tig0018197:+51714 | None:intergenic |
| GTTACAATTCTCCTTGAGAA+AGG | 0.439341 | tig0018197:+49234 | None:intergenic |
| CACATTTGGTAGCACCCATA+TGG | 0.442952 | tig0018197:+49535 | None:intergenic |
| CAACACTAGATCTTCCCGTT+TGG | 0.443376 | tig0018197:-49805 | Msa1365000:CDS |
| ATAAGAGAACTAAGACAATA+TGG | 0.448976 | tig0018197:-49911 | Msa1365000:CDS |
| GAAAGTTAATGGGATTGGAT+TGG | 0.453214 | tig0018197:+51673 | None:intergenic |
| TGCTACATTTCATTTCTTTG+AGG | 0.453293 | tig0018197:-50038 | Msa1365000:CDS |
| AAGAAATGAAATGTAGCATT+GGG | 0.454110 | tig0018197:+50043 | None:intergenic |
| TTCTTCACATGCTACAATAT+AGG | 0.454734 | tig0018197:+51767 | None:intergenic |
| CAGTGTTGATGATATATTGT+TGG | 0.461856 | tig0018197:+50619 | None:intergenic |
| GGGATTGGATTGGATTGGAT+TGG | 0.463586 | tig0018197:+51683 | None:intergenic |
| ATCAATCTCAGTAAGCCAAA+CGG | 0.466197 | tig0018197:+49790 | None:intergenic |
| ATCTTAACTGTGTACCTGTA+AGG | 0.467889 | tig0018197:+50179 | None:intergenic |
| TCAATCTCAGTAAGCCAAAC+GGG | 0.472110 | tig0018197:+49791 | None:intergenic |
| CTGTCTCTATCAACTCTGAT+TGG | 0.479768 | tig0018197:-49206 | Msa1365000:three_prime_UTR |
| AAAGAAATGAAATGTAGCAT+TGG | 0.480004 | tig0018197:+50042 | None:intergenic |
| CAAAACAGAATTCATACATT+GGG | 0.480784 | tig0018197:-50116 | Msa1365000:CDS |
| GATTTCTACGAACAAAGGCT+TGG | 0.482875 | tig0018197:-50067 | Msa1365000:CDS |
| CCACTTTACGGTGGAGGAGG+AGG | 0.484097 | tig0018197:-51207 | Msa1365000:CDS |
| GTTCATGTATCAGACCCTAA+TGG | 0.488462 | tig0018197:-50502 | Msa1365000:CDS |
| TTTGCTATCGCAGAGCCAAT+AGG | 0.489645 | tig0018197:+50427 | None:intergenic |
| TTTATTTGGAACAAGTATTG+AGG | 0.493659 | tig0018197:-49612 | Msa1365000:CDS |
| AAATGACCAACATCCACGTT+TGG | 0.493661 | tig0018197:+50782 | None:intergenic |
| GAAGTAGGTTGCATCATCCT+TGG | 0.493827 | tig0018197:+51542 | None:intergenic |
| AAATTAAGTCACAGTGTCAC+AGG | 0.494605 | tig0018197:+49295 | None:intergenic |
| GGACAGCACTTCATCCATAT+GGG | 0.495243 | tig0018197:-49549 | Msa1365000:CDS |
| TCTAGGATAGCTCTTATAAG+TGG | 0.496749 | tig0018197:+49836 | None:intergenic |
| GATTTCAACAACTTACCATC+AGG | 0.497916 | tig0018197:-49499 | Msa1365000:CDS |
| AAGCCACTTTACGGTGGAGG+AGG | 0.499159 | tig0018197:-51210 | Msa1365000:CDS |
| TTCATAAACAAAGTTGCTAA+AGG | 0.499339 | tig0018197:+49998 | None:intergenic |
| TCTTCTAGTTATAATACCGA+TGG | 0.501758 | tig0018197:-51489 | Msa1365000:CDS |
| TTAATGGGATTGGATTGGAT+TGG | 0.502425 | tig0018197:+51678 | None:intergenic |
| GTTGGTTGATTCTCCATTGG+TGG | 0.504409 | tig0018197:+50637 | None:intergenic |
| CCTCCTCCTCCACCGTAAAG+TGG | 0.507893 | tig0018197:+51207 | None:intergenic |
| ATTGTTGGTTGATTCTCCAT+TGG | 0.513327 | tig0018197:+50634 | None:intergenic |
| TGTTGGTCATTTCTCAAAGG+TGG | 0.513377 | tig0018197:-50771 | Msa1365000:CDS |
| TCTCACACCCTTCAGTGAAT+GGG | 0.515758 | tig0018197:-49582 | Msa1365000:CDS |
| TTATTTGGAACAAGTATTGA+GGG | 0.519096 | tig0018197:-49611 | Msa1365000:CDS |
| GGATTGGATTGGATTGGAGG+AGG | 0.522041 | tig0018197:+51689 | None:intergenic |
| ATCTGAGTTGTGAAAGAAGA+TGG | 0.523796 | tig0018197:+50716 | None:intergenic |
| CTAGTGTTGCCAATTTGTCT+AGG | 0.527390 | tig0018197:+49819 | None:intergenic |
| ATATGGTATGTTGCCAAGAA+TGG | 0.540598 | tig0018197:+50402 | None:intergenic |
| CTTCTAGTTATAATACCGAT+GGG | 0.541621 | tig0018197:-51488 | Msa1365000:CDS |
| ACTTTGATTTCTACGAACAA+AGG | 0.545752 | tig0018197:-50072 | Msa1365000:CDS |
| ACAAAACAGAATTCATACAT+TGG | 0.546953 | tig0018197:-50117 | Msa1365000:CDS |
| TCGGTATTATAACTAGAAGA+AGG | 0.551967 | tig0018197:+51492 | None:intergenic |
| AAGATGGTAGATGAATTTGA+AGG | 0.553423 | tig0018197:+50732 | None:intergenic |
| GAGAAGCCACTTTACGGTGG+AGG | 0.555307 | tig0018197:-51213 | Msa1365000:CDS |
| CAACAACACCAACATGAACA+TGG | 0.556480 | tig0018197:-51163 | Msa1365000:CDS |
| TTGGAACAAGTATTGAGGGA+AGG | 0.561612 | tig0018197:-49607 | Msa1365000:CDS |
| TATGGCTACTTAACTTAACA+CGG | 0.562500 | tig0018197:-51621 | Msa1365000:five_prime_UTR |
| AGCATTATCCCATTCACTGA+AGG | 0.566045 | tig0018197:+49574 | None:intergenic |
| ATCTTCTTTCACAACTCAGA+TGG | 0.566431 | tig0018197:-50714 | Msa1365000:CDS |
| AGATTATAGAAGACAAGTGA+AGG | 0.569889 | tig0018197:+51135 | None:intergenic |
| ACCCTAAATACAATCCTGCA+TGG | 0.572180 | tig0018197:-50210 | Msa1365000:CDS |
| ATGGATGGAATTGGTCTCGA+GGG | 0.573124 | tig0018197:-49881 | Msa1365000:CDS |
| ACGGGCATCCTATTCCTCAC+TGG | 0.573439 | tig0018197:-51740 | Msa1365000:five_prime_UTR |
| CTCAGATGGTAAAGATCATG+TGG | 0.575507 | tig0018197:-50700 | Msa1365000:CDS |
| CACACTTGATCATGATACTC+AGG | 0.577347 | tig0018197:-49759 | Msa1365000:intron |
| TATCACAAGGGAACAGAACA+GGG | 0.582185 | tig0018197:+51715 | None:intergenic |
| CTTCACTAGAACCTTTCTCA+AGG | 0.584604 | tig0018197:-49245 | Msa1365000:three_prime_UTR |
| CCTAATGGAAGGAAATTACA+AGG | 0.585093 | tig0018197:-50487 | Msa1365000:CDS |
| TCTAGTTATAATACCGATGG+GGG | 0.585265 | tig0018197:-51486 | Msa1365000:CDS |
| TCAACTTTCTCTCTATGTAG+AGG | 0.586344 | tig0018197:-49337 | Msa1365000:CDS |
| GCATTATCCCATTCACTGAA+GGG | 0.590706 | tig0018197:+49575 | None:intergenic |
| TTCTAGTTATAATACCGATG+GGG | 0.591385 | tig0018197:-51487 | Msa1365000:CDS |
| CAACTTACCATCAGGTGATG+TGG | 0.598575 | tig0018197:-49491 | Msa1365000:CDS |
| CCCTAAATACAATCCTGCAT+GGG | 0.602674 | tig0018197:-50209 | Msa1365000:CDS |
| GGATGTTGGTCATTTCTCAA+AGG | 0.605842 | tig0018197:-50774 | Msa1365000:CDS |
| GTCTGATACATGAACAGTGA+CGG | 0.610322 | tig0018197:+50510 | None:intergenic |
| TAGCATGTGAAGAAGAGCAC+GGG | 0.610956 | tig0018197:-51758 | Msa1365000:five_prime_UTR |
| TATGGATGGAATTGGTCTCG+AGG | 0.616485 | tig0018197:-49882 | Msa1365000:CDS |
| GCCAACAAAATCATAGCTAG+AGG | 0.617131 | tig0018197:-50253 | Msa1365000:CDS |
| TCTGCCTTCATGAGGCTCTG+TGG | 0.618660 | tig0018197:+50318 | None:intergenic |
| TTGGAGGAGGTGATATCACA+AGG | 0.621040 | tig0018197:+51702 | None:intergenic |
| ATGTATCAGACCCTAATGGA+AGG | 0.621861 | tig0018197:-50498 | Msa1365000:CDS |
| TAGTTGACTCTGCCTTCATG+AGG | 0.625434 | tig0018197:+50310 | None:intergenic |
| TGGATAAACTTCTTCAAGAG+TGG | 0.627938 | tig0018197:-49468 | Msa1365000:CDS |
| AATTAAGTCACAGTGTCACA+GGG | 0.628706 | tig0018197:+49296 | None:intergenic |
| TGAATGGTATGGAATGAAGT+AGG | 0.634785 | tig0018197:+51527 | None:intergenic |
| TATGCCACAGAGCCTCATGA+AGG | 0.641188 | tig0018197:-50322 | Msa1365000:CDS |
| TTATCCACCACATCACCTGA+TGG | 0.643051 | tig0018197:+49484 | None:intergenic |
| ATGGCTACTTAACTTAACAC+GGG | 0.644296 | tig0018197:-51620 | Msa1365000:five_prime_UTR |
| CTTACCATCAGGTGATGTGG+TGG | 0.645932 | tig0018197:-49488 | Msa1365000:CDS |
| TAAACAGCAGTACTAGTCCA+AGG | 0.645943 | tig0018197:-51559 | Msa1365000:CDS |
| AGCCATTTACTCACCACCAA+TGG | 0.646406 | tig0018197:-50650 | Msa1365000:CDS |
| ATTCAGTTATGATAAAGGCA+AGG | 0.650648 | tig0018197:-50851 | Msa1365000:CDS |
| GAAGGTATCACAGATGAGCA+TGG | 0.651877 | tig0018197:-49430 | Msa1365000:CDS |
| GTAGCATGTGAAGAAGAGCA+CGG | 0.653426 | tig0018197:-51759 | Msa1365000:five_prime_UTR |
| GTAAGGTTAAGAACCCATGC+AGG | 0.663112 | tig0018197:+50196 | None:intergenic |
| TAAGCAGTAGAGTCATATAG+GGG | 0.663519 | tig0018197:+51362 | None:intergenic |
| TGACTCTACTGCTTACACTC+AGG | 0.668323 | tig0018197:-51354 | Msa1365000:intron |
| GGCTGCTACAGTATGGGTGA+AGG | 0.668347 | tig0018197:-50886 | Msa1365000:intron |
| GCGTTGACGCTTATATCTCA+CGG | 0.669191 | tig0018197:-49934 | Msa1365000:CDS |
| CCAGAGAAGCCACTTTACGG+TGG | 0.680549 | tig0018197:-51216 | Msa1365000:CDS |
| AGGTGAAGCCATGTTCATGT+TGG | 0.701518 | tig0018197:+51155 | None:intergenic |
| AGAGTTGATAGAGACAGTTG+TGG | 0.708134 | tig0018197:+49212 | None:intergenic |
| AACAGAACAGGGGACCAGTG+AGG | 0.713722 | tig0018197:+51726 | None:intergenic |
| ATCACAAGGGAACAGAACAG+GGG | 0.724966 | tig0018197:+51716 | None:intergenic |
| TGTTGAAATCATTGTCTGTG+AGG | 0.726848 | tig0018197:+49512 | None:intergenic |
| TGGAGGAGGTGATATCACAA+GGG | 0.734851 | tig0018197:+51703 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCTTTTTTTGTTTCATA+TGG | - | tig0018197:49271-49290 | Msa1365000:three_prime_UTR | 15.0% |
| !! | TAATGAATTGAATCAATAAA+AGG | + | tig0018197:49481-49500 | None:intergenic | 15.0% |
| !! | AGAAAAATATATGAATGGTA+TGG | + | tig0018197:49397-49416 | None:intergenic | 20.0% |
| !! | AAGGAAGAAAAATATATGAA+TGG | + | tig0018197:49402-49421 | None:intergenic | 20.0% |
| !!! | GATAGATAATATGTTGTTTT+TGG | + | tig0018197:50324-50343 | None:intergenic | 20.0% |
| !! | TTATTTGTAGGCAATTTATT+TGG | - | tig0018197:51284-51303 | Msa1365000:intron | 20.0% |
| ! | TACTACGTTTGAAAGTTAAT+GGG | + | tig0018197:49250-49269 | None:intergenic | 25.0% |
| ! | TACAGATTCAGTTATGATAA+AGG | - | tig0018197:50054-50073 | Msa1365000:CDS | 25.0% |
| ! | AATGAGACATATAACTGTAT+TGG | - | tig0018197:50094-50113 | Msa1365000:CDS | 25.0% |
| ! | ATGAGACATATAACTGTATT+GGG | - | tig0018197:50095-50114 | Msa1365000:CDS | 25.0% |
| ! | ATATCAAAAGACTTTCCTAT+TGG | - | tig0018197:50468-50487 | Msa1365000:CDS | 25.0% |
| !! | GTATGAATTCTGTTTTGTAT+TGG | + | tig0018197:50791-50810 | None:intergenic | 25.0% |
| ! | ACAAAACAGAATTCATACAT+TGG | - | tig0018197:50793-50812 | Msa1365000:CDS | 25.0% |
| ! | CAAAACAGAATTCATACATT+GGG | - | tig0018197:50794-50813 | Msa1365000:CDS | 25.0% |
| ! | AAGAAATGAAATGTAGCATT+GGG | + | tig0018197:50870-50889 | None:intergenic | 25.0% |
| ! | AAAGAAATGAAATGTAGCAT+TGG | + | tig0018197:50871-50890 | None:intergenic | 25.0% |
| ! | TTCATAAACAAAGTTGCTAA+AGG | + | tig0018197:50915-50934 | None:intergenic | 25.0% |
| ! | ATAAGAGAACTAAGACAATA+TGG | - | tig0018197:50999-51018 | Msa1365000:intron | 25.0% |
| !!! | AAGACAATATGGTGTTTTTA+TGG | - | tig0018197:51010-51029 | Msa1365000:intron | 25.0% |
| !! | TTTATTTGGAACAAGTATTG+AGG | - | tig0018197:51298-51317 | Msa1365000:intron | 25.0% |
| !!! | TTATTTGGAACAAGTATTGA+GGG | - | tig0018197:51299-51318 | Msa1365000:intron | 25.0% |
| ! | TCTTAGGAGAATATAGAATT+AGG | - | tig0018197:51523-51542 | Msa1365000:CDS | 25.0% |
| ! | CTTAGGAGAATATAGAATTA+GGG | - | tig0018197:51524-51543 | Msa1365000:CDS | 25.0% |
| ! | TTACATGAGCAGTTAAATAA+AGG | - | tig0018197:51729-51748 | Msa1365000:five_prime_UTR | 25.0% |
| TTCTTCACATGCTACAATAT+AGG | + | tig0018197:49146-49165 | None:intergenic | 30.0% | |
| GTACTACGTTTGAAAGTTAA+TGG | + | tig0018197:49251-49270 | None:intergenic | 30.0% | |
| TATGGCTACTTAACTTAACA+CGG | - | tig0018197:49289-49308 | Msa1365000:exon | 30.0% | |
| TCGGTATTATAACTAGAAGA+AGG | + | tig0018197:49421-49440 | None:intergenic | 30.0% | |
| ! | TCTTCTAGTTATAATACCGA+TGG | - | tig0018197:49421-49440 | Msa1365000:CDS | 30.0% |
| ! | CTTCTAGTTATAATACCGAT+GGG | - | tig0018197:49422-49441 | Msa1365000:CDS | 30.0% |
| ! | TTCTAGTTATAATACCGATG+GGG | - | tig0018197:49423-49442 | Msa1365000:CDS | 30.0% |
| AGATTATAGAAGACAAGTGA+AGG | + | tig0018197:49778-49797 | None:intergenic | 30.0% | |
| ! | GACACTATCTATTCTTTTTC+TGG | - | tig0018197:49805-49824 | Msa1365000:CDS | 30.0% |
| ATTAAAAATGATTCCGTTGC+CGG | - | tig0018197:49891-49910 | Msa1365000:CDS | 30.0% | |
| GGATTATTGTTGATGTCATT+GGG | - | tig0018197:49972-49991 | Msa1365000:CDS | 30.0% | |
| ATTCAGTTATGATAAAGGCA+AGG | - | tig0018197:50059-50078 | Msa1365000:CDS | 30.0% | |
| AAGATGGTAGATGAATTTGA+AGG | + | tig0018197:50181-50200 | None:intergenic | 30.0% | |
| !! | CAGTGTTGATGATATATTGT+TGG | + | tig0018197:50294-50313 | None:intergenic | 30.0% |
| CTTGTAATTTCCTTCCATTA+GGG | + | tig0018197:50425-50444 | None:intergenic | 30.0% | |
| TTCACAAACCAATTCTGATA+TGG | + | tig0018197:50528-50547 | None:intergenic | 30.0% | |
| !! | ATCAGAATTGGTTTGTGAAA+CGG | - | tig0018197:50529-50548 | Msa1365000:intron | 30.0% |
| ! | TCTTTGAAAACGAGCTTAAA+TGG | - | tig0018197:50565-50584 | Msa1365000:intron | 30.0% |
| CTCTAACAAATTGCATCATT+TGG | + | tig0018197:50638-50657 | None:intergenic | 30.0% | |
| ! | TAGAGGACACAATATTTTCT+GGG | - | tig0018197:50674-50693 | Msa1365000:CDS | 30.0% |
| ! | ACTTTGATTTCTACGAACAA+AGG | - | tig0018197:50838-50857 | Msa1365000:CDS | 30.0% |
| TGCTACATTTCATTTCTTTG+AGG | - | tig0018197:50872-50891 | Msa1365000:CDS | 30.0% | |
| !! | CAATATGGTGTTTTTATGGA+TGG | - | tig0018197:51014-51033 | Msa1365000:intron | 30.0% |
| ! | TGCCTTCATTCTTTATTTGT+AGG | - | tig0018197:51272-51291 | Msa1365000:intron | 30.0% |
| TGCCTACAAATAAAGAATGA+AGG | + | tig0018197:51277-51296 | None:intergenic | 30.0% | |
| ! | ATGGTTCACATAGCTTTTAT+GGG | - | tig0018197:51499-51518 | Msa1365000:CDS | 30.0% |
| ! | TTAATGGGATTGGATTGGAT+TGG | + | tig0018197:49235-49254 | None:intergenic | 35.0% |
| GAAAGTTAATGGGATTGGAT+TGG | + | tig0018197:49240-49259 | None:intergenic | 35.0% | |
| CGTTTGAAAGTTAATGGGAT+TGG | + | tig0018197:49245-49264 | None:intergenic | 35.0% | |
| ATGGCTACTTAACTTAACAC+GGG | - | tig0018197:49290-49309 | Msa1365000:exon | 35.0% | |
| TGAATGGTATGGAATGAAGT+AGG | + | tig0018197:49386-49405 | None:intergenic | 35.0% | |
| TCTAGTTATAATACCGATGG+GGG | - | tig0018197:49424-49443 | Msa1365000:CDS | 35.0% | |
| !! | CGATATTGTTTTGTTGCAGA+TGG | - | tig0018197:49524-49543 | Msa1365000:CDS | 35.0% |
| TAAGCAGTAGAGTCATATAG+GGG | + | tig0018197:49551-49570 | None:intergenic | 35.0% | |
| GTAAGCAGTAGAGTCATATA+GGG | + | tig0018197:49552-49571 | None:intergenic | 35.0% | |
| TGTAAGCAGTAGAGTCATAT+AGG | + | tig0018197:49553-49572 | None:intergenic | 35.0% | |
| TTAAAAATGATTCCGTTGCC+GGG | - | tig0018197:49892-49911 | Msa1365000:CDS | 35.0% | |
| ATAATCCGTTGTAGTCTAGT+TGG | + | tig0018197:49959-49978 | None:intergenic | 35.0% | |
| CGGATTATTGTTGATGTCAT+TGG | - | tig0018197:49971-49990 | Msa1365000:CDS | 35.0% | |
| ATCTGAGTTGTGAAAGAAGA+TGG | + | tig0018197:50197-50216 | None:intergenic | 35.0% | |
| ATCTTCTTTCACAACTCAGA+TGG | - | tig0018197:50196-50215 | Msa1365000:CDS | 35.0% | |
| ! | ATTGTTGGTTGATTCTCCAT+TGG | + | tig0018197:50279-50298 | None:intergenic | 35.0% |
| CCTTGTAATTTCCTTCCATT+AGG | + | tig0018197:50426-50445 | None:intergenic | 35.0% | |
| CCTAATGGAAGGAAATTACA+AGG | - | tig0018197:50423-50442 | Msa1365000:CDS | 35.0% | |
| ATATGGTATGTTGCCAAGAA+TGG | + | tig0018197:50511-50530 | None:intergenic | 35.0% | |
| GCAACATACCATATCAGAAT+TGG | - | tig0018197:50517-50536 | Msa1365000:CDS | 35.0% | |
| ! | TCCTCTAGCTATGATTTTGT+TGG | + | tig0018197:50661-50680 | None:intergenic | 35.0% |
| ! | CTAGAGGACACAATATTTTC+TGG | - | tig0018197:50673-50692 | Msa1365000:CDS | 35.0% |
| ATCTTAACTGTGTACCTGTA+AGG | + | tig0018197:50734-50753 | None:intergenic | 35.0% | |
| !! | GGTGTTTTTATGGATGGAAT+TGG | - | tig0018197:51020-51039 | Msa1365000:intron | 35.0% |
| GCTCTTATAAGTGGAAGATT+TGG | + | tig0018197:51068-51087 | None:intergenic | 35.0% | |
| ! | TCTAGGATAGCTCTTATAAG+TGG | + | tig0018197:51077-51096 | None:intergenic | 35.0% |
| AAGAGCTATCCTAGACAAAT+TGG | - | tig0018197:51082-51101 | Msa1365000:intron | 35.0% | |
| ATCAATCTCAGTAAGCCAAA+CGG | + | tig0018197:51123-51142 | None:intergenic | 35.0% | |
| TGTTGAAATCATTGTCTGTG+AGG | + | tig0018197:51401-51420 | None:intergenic | 35.0% | |
| GATTTCAACAACTTACCATC+AGG | - | tig0018197:51411-51430 | Msa1365000:intron | 35.0% | |
| TGGATAAACTTCTTCAAGAG+TGG | - | tig0018197:51442-51461 | Msa1365000:intron | 35.0% | |
| ! | CATGGTTCACATAGCTTTTA+TGG | - | tig0018197:51498-51517 | Msa1365000:CDS | 35.0% |
| ! | CATAGCTTTTATGGGTTCTT+AGG | - | tig0018197:51507-51526 | Msa1365000:CDS | 35.0% |
| TCAACTTTCTCTCTATGTAG+AGG | - | tig0018197:51573-51592 | Msa1365000:CDS | 35.0% | |
| AATTAAGTCACAGTGTCACA+GGG | + | tig0018197:51617-51636 | None:intergenic | 35.0% | |
| AAATTAAGTCACAGTGTCAC+AGG | + | tig0018197:51618-51637 | None:intergenic | 35.0% | |
| ! | AGGTTCTAGTGAAGAAGTTA+AGG | + | tig0018197:51659-51678 | None:intergenic | 35.0% |
| GTTACAATTCTCCTTGAGAA+AGG | + | tig0018197:51679-51698 | None:intergenic | 35.0% | |
| TATCACAAGGGAACAGAACA+GGG | + | tig0018197:49198-49217 | None:intergenic | 40.0% | |
| ATATCACAAGGGAACAGAAC+AGG | + | tig0018197:49199-49218 | None:intergenic | 40.0% | |
| ! | ATTGGATTGGATTGGATTGG+AGG | + | tig0018197:49227-49246 | None:intergenic | 40.0% |
| TAAACAGCAGTACTAGTCCA+AGG | - | tig0018197:49351-49370 | Msa1365000:CDS | 40.0% | |
| AAAGAAGAAGAAACCCCCAT+CGG | + | tig0018197:49440-49459 | None:intergenic | 40.0% | |
| GGGGTTTCTTCTTCTTTCTA+TGG | - | tig0018197:49443-49462 | Msa1365000:CDS | 40.0% | |
| CAACAACACCAACATGAACA+TGG | - | tig0018197:49747-49766 | Msa1365000:intron | 40.0% | |
| GTCTAGTTGGTTAGGATACT+CGG | + | tig0018197:49946-49965 | None:intergenic | 40.0% | |
| CCTAACCAACTAGACTACAA+CGG | - | tig0018197:49951-49970 | Msa1365000:CDS | 40.0% | |
| CACGTCAGCATATATAACGA+TGG | + | tig0018197:50005-50024 | None:intergenic | 40.0% | |
| CATCGTTATATATGCTGACG+TGG | - | tig0018197:50003-50022 | Msa1365000:CDS | 40.0% | |
| ! | TTTTAGCCAAACGTGGATGT+TGG | - | tig0018197:50122-50141 | Msa1365000:CDS | 40.0% |
| AAATGACCAACATCCACGTT+TGG | + | tig0018197:50131-50150 | None:intergenic | 40.0% | |
| GGATGTTGGTCATTTCTCAA+AGG | - | tig0018197:50136-50155 | Msa1365000:CDS | 40.0% | |
| TGTTGGTCATTTCTCAAAGG+TGG | - | tig0018197:50139-50158 | Msa1365000:CDS | 40.0% | |
| CTCAGATGGTAAAGATCATG+TGG | - | tig0018197:50210-50229 | Msa1365000:CDS | 40.0% | |
| GTCTGATACATGAACAGTGA+CGG | + | tig0018197:50403-50422 | None:intergenic | 40.0% | |
| GTTCATGTATCAGACCCTAA+TGG | - | tig0018197:50408-50427 | Msa1365000:CDS | 40.0% | |
| ATGTATCAGACCCTAATGGA+AGG | - | tig0018197:50412-50431 | Msa1365000:CDS | 40.0% | |
| GCCAACAAAATCATAGCTAG+AGG | - | tig0018197:50657-50676 | Msa1365000:CDS | 40.0% | |
| ACCCTAAATACAATCCTGCA+TGG | - | tig0018197:50700-50719 | Msa1365000:CDS | 40.0% | |
| CCCATGCAGGATTGTATTTA+GGG | + | tig0018197:50704-50723 | None:intergenic | 40.0% | |
| CCCTAAATACAATCCTGCAT+GGG | - | tig0018197:50701-50720 | Msa1365000:CDS | 40.0% | |
| ACCCATGCAGGATTGTATTT+AGG | + | tig0018197:50705-50724 | None:intergenic | 40.0% | |
| GATTTCTACGAACAAAGGCT+TGG | - | tig0018197:50843-50862 | Msa1365000:CDS | 40.0% | |
| CTAGTGTTGCCAATTTGTCT+AGG | + | tig0018197:51094-51113 | None:intergenic | 40.0% | |
| TCAATCTCAGTAAGCCAAAC+GGG | + | tig0018197:51122-51141 | None:intergenic | 40.0% | |
| CACACTTGATCATGATACTC+AGG | - | tig0018197:51151-51170 | Msa1365000:CDS | 40.0% | |
| TTGATCATGATACTCAGGTG+AGG | - | tig0018197:51156-51175 | Msa1365000:CDS | 40.0% | |
| !! | TTGGAACAAGTATTGAGGGA+AGG | - | tig0018197:51303-51322 | Msa1365000:intron | 40.0% |
| GCATTATCCCATTCACTGAA+GGG | + | tig0018197:51338-51357 | None:intergenic | 40.0% | |
| AGCATTATCCCATTCACTGA+AGG | + | tig0018197:51339-51358 | None:intergenic | 40.0% | |
| CAGTGAATGGGATAATGCTT+TGG | - | tig0018197:51340-51359 | Msa1365000:intron | 40.0% | |
| CTTCACTAGAACCTTTCTCA+AGG | - | tig0018197:51665-51684 | Msa1365000:five_prime_UTR | 40.0% | |
| !! | AGAGTTGATAGAGACAGTTG+TGG | + | tig0018197:51701-51720 | None:intergenic | 40.0% |
| CTGTCTCTATCAACTCTGAT+TGG | - | tig0018197:51704-51723 | Msa1365000:five_prime_UTR | 40.0% | |
| AGTCACAGTCACGTGAGATT+TGG | - | tig0018197:49099-49118 | Msa1365000:three_prime_UTR | 45.0% | |
| GTAGCATGTGAAGAAGAGCA+CGG | - | tig0018197:49151-49170 | Msa1365000:three_prime_UTR | 45.0% | |
| ! | TAGCATGTGAAGAAGAGCAC+GGG | - | tig0018197:49152-49171 | Msa1365000:three_prime_UTR | 45.0% |
| ATCACAAGGGAACAGAACAG+GGG | + | tig0018197:49197-49216 | None:intergenic | 45.0% | |
| TGGAGGAGGTGATATCACAA+GGG | + | tig0018197:49210-49229 | None:intergenic | 45.0% | |
| TTGGAGGAGGTGATATCACA+AGG | + | tig0018197:49211-49230 | None:intergenic | 45.0% | |
| ! | GGGATTGGATTGGATTGGAT+TGG | + | tig0018197:49230-49249 | None:intergenic | 45.0% |
| GAAGTAGGTTGCATCATCCT+TGG | + | tig0018197:49371-49390 | None:intergenic | 45.0% | |
| TGACTCTACTGCTTACACTC+AGG | - | tig0018197:49556-49575 | Msa1365000:CDS | 45.0% | |
| ! | CATCCAGAGAAGCCACTTTA+CGG | - | tig0018197:49691-49710 | Msa1365000:intron | 45.0% |
| AGGTGAAGCCATGTTCATGT+TGG | + | tig0018197:49758-49777 | None:intergenic | 45.0% | |
| CCGTTGTAGTCTAGTTGGTT+AGG | + | tig0018197:49954-49973 | None:intergenic | 45.0% | |
| AGCCATTTACTCACCACCAA+TGG | - | tig0018197:50260-50279 | Msa1365000:CDS | 45.0% | |
| !! | CTCCATTGGTGGTGAGTAAA+TGG | + | tig0018197:50265-50284 | None:intergenic | 45.0% |
| ! | GTTGGTTGATTCTCCATTGG+TGG | + | tig0018197:50276-50295 | None:intergenic | 45.0% |
| ! | TTTGCTATCGCAGAGCCAAT+AGG | + | tig0018197:50486-50505 | None:intergenic | 45.0% |
| GCGATAGCAAAGACCATTCT+TGG | - | tig0018197:50495-50514 | Msa1365000:CDS | 45.0% | |
| ! | TAGTTGACTCTGCCTTCATG+AGG | + | tig0018197:50603-50622 | None:intergenic | 45.0% |
| GTAAGGTTAAGAACCCATGC+AGG | + | tig0018197:50717-50736 | None:intergenic | 45.0% | |
| GCATGGGTTCTTAACCTTAC+AGG | - | tig0018197:50717-50736 | Msa1365000:CDS | 45.0% | |
| ! | GCGTTGACGCTTATATCTCA+CGG | - | tig0018197:50976-50995 | Msa1365000:intron | 45.0% |
| ! | TATGGATGGAATTGGTCTCG+AGG | - | tig0018197:51028-51047 | Msa1365000:intron | 45.0% |
| ! | ATGGATGGAATTGGTCTCGA+GGG | - | tig0018197:51029-51048 | Msa1365000:intron | 45.0% |
| CAACACTAGATCTTCCCGTT+TGG | - | tig0018197:51105-51124 | Msa1365000:intron | 45.0% | |
| TTCTCACACCCTTCAGTGAA+TGG | - | tig0018197:51327-51346 | Msa1365000:intron | 45.0% | |
| TCTCACACCCTTCAGTGAAT+GGG | - | tig0018197:51328-51347 | Msa1365000:intron | 45.0% | |
| TGGACAGCACTTCATCCATA+TGG | - | tig0018197:51360-51379 | Msa1365000:CDS | 45.0% | |
| GGACAGCACTTCATCCATAT+GGG | - | tig0018197:51361-51380 | Msa1365000:CDS | 45.0% | |
| ! | CACATTTGGTAGCACCCATA+TGG | + | tig0018197:51378-51397 | None:intergenic | 45.0% |
| CATTGTCTGTGAGGCACATT+TGG | + | tig0018197:51392-51411 | None:intergenic | 45.0% | |
| CAACTTACCATCAGGTGATG+TGG | - | tig0018197:51419-51438 | Msa1365000:intron | 45.0% | |
| TTATCCACCACATCACCTGA+TGG | + | tig0018197:51429-51448 | None:intergenic | 45.0% | |
| CTTCTTCAAGAGTGGCAAAC+TGG | - | tig0018197:51450-51469 | Msa1365000:intron | 45.0% | |
| !! | GAAGGTATCACAGATGAGCA+TGG | - | tig0018197:51480-51499 | Msa1365000:CDS | 45.0% |
| ! | GGATTGGATTGGATTGGAGG+AGG | + | tig0018197:49224-49243 | None:intergenic | 50.0% |
| CTACTGCTTACACTCAGGTG+AGG | - | tig0018197:49561-49580 | Msa1365000:CDS | 50.0% | |
| TGACGTGGCTGCTACAGTAT+GGG | - | tig0018197:50018-50037 | Msa1365000:CDS | 50.0% | |
| !! | GGGACAGTTTTAGCCAAACG+TGG | - | tig0018197:50115-50134 | Msa1365000:CDS | 50.0% |
| TATGCCACAGAGCCTCATGA+AGG | - | tig0018197:50588-50607 | Msa1365000:intron | 50.0% | |
| GTAGCTAGCTAGCTAGCTAG+AGG | - | tig0018197:51178-51197 | Msa1365000:CDS | 50.0% | |
| CTTACCATCAGGTGATGTGG+TGG | - | tig0018197:51422-51441 | Msa1365000:intron | 50.0% | |
| TGGCAAACTGGTCGTGTAGA+AGG | - | tig0018197:51462-51481 | Msa1365000:intron | 50.0% | |
| ACGGGCATCCTATTCCTCAC+TGG | - | tig0018197:49170-49189 | Msa1365000:three_prime_UTR | 55.0% | |
| ACAGGGGACCAGTGAGGAAT+AGG | + | tig0018197:49181-49200 | None:intergenic | 55.0% | |
| AACAGAACAGGGGACCAGTG+AGG | + | tig0018197:49187-49206 | None:intergenic | 55.0% | |
| CCACCGTAAAGTGGCTTCTC+TGG | + | tig0018197:49697-49716 | None:intergenic | 55.0% | |
| ! | CCAGAGAAGCCACTTTACGG+TGG | - | tig0018197:49694-49713 | Msa1365000:intron | 55.0% |
| ! | GAGAAGCCACTTTACGGTGG+AGG | - | tig0018197:49697-49716 | Msa1365000:intron | 55.0% |
| ! | AAGCCACTTTACGGTGGAGG+AGG | - | tig0018197:49700-49719 | Msa1365000:intron | 55.0% |
| CTGACGTGGCTGCTACAGTA+TGG | - | tig0018197:50017-50036 | Msa1365000:CDS | 55.0% | |
| GGCTGCTACAGTATGGGTGA+AGG | - | tig0018197:50024-50043 | Msa1365000:CDS | 55.0% | |
| TCTGCCTTCATGAGGCTCTG+TGG | + | tig0018197:50595-50614 | None:intergenic | 55.0% | |
| CCTCCTCCTCCACCGTAAAG+TGG | + | tig0018197:49706-49725 | None:intergenic | 60.0% | |
| CCACTTTACGGTGGAGGAGG+AGG | - | tig0018197:49703-49722 | Msa1365000:intron | 60.0% | |
| AGAGACCCGGGTTCAAGTCC+CGG | + | tig0018197:49913-49932 | None:intergenic | 60.0% | |
| GGACTTGAACCCGGGTCTCT+CGG | - | tig0018197:49913-49932 | Msa1365000:CDS | 60.0% | |
| GACTTGAACCCGGGTCTCTC+GGG | - | tig0018197:49914-49933 | Msa1365000:CDS | 60.0% | |
| CCGGGTTCAAGTCCCGGCAA+CGG | + | tig0018197:49907-49926 | None:intergenic | 65.0% | |
| CCGTTGCCGGGACTTGAACC+CGG | - | tig0018197:49904-49923 | Msa1365000:CDS | 65.0% | |
| CGTTGCCGGGACTTGAACCC+GGG | - | tig0018197:49905-49924 | Msa1365000:CDS | 65.0% | |
| GGCTCTCACCCGAGAGACCC+GGG | + | tig0018197:49925-49944 | None:intergenic | 70.0% | |
| CGGCTCTCACCCGAGAGACC+CGG | + | tig0018197:49926-49945 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018197 | gene | 49069 | 51863 | 49069 | ID=Msa1365000;Name=Msa1365000 |
| tig0018197 | mRNA | 49069 | 51863 | 49069 | ID=Msa1365000-mRNA-1;Parent=Msa1365000;Name=Msa1365000-mRNA-1;_AED=0.08;_eAED=0.08;_QI=260|1|1|1|1|1|6|234|571 |
| tig0018197 | exon | 49069 | 49638 | 49069 | ID=Msa1365000-mRNA-1:exon:14351;Parent=Msa1365000-mRNA-1 |
| tig0018197 | exon | 49760 | 50545 | 49760 | ID=Msa1365000-mRNA-1:exon:14350;Parent=Msa1365000-mRNA-1 |
| tig0018197 | exon | 50620 | 50897 | 50620 | ID=Msa1365000-mRNA-1:exon:14349;Parent=Msa1365000-mRNA-1 |
| tig0018197 | exon | 51106 | 51250 | 51106 | ID=Msa1365000-mRNA-1:exon:14348;Parent=Msa1365000-mRNA-1 |
| tig0018197 | exon | 51355 | 51389 | 51355 | ID=Msa1365000-mRNA-1:exon:14347;Parent=Msa1365000-mRNA-1 |
| tig0018197 | exon | 51468 | 51863 | 51468 | ID=Msa1365000-mRNA-1:exon:14346;Parent=Msa1365000-mRNA-1 |
| tig0018197 | five_prime_UTR | 51604 | 51863 | 51604 | ID=Msa1365000-mRNA-1:five_prime_utr;Parent=Msa1365000-mRNA-1 |
| tig0018197 | CDS | 51468 | 51603 | 51468 | ID=Msa1365000-mRNA-1:cds;Parent=Msa1365000-mRNA-1 |
| tig0018197 | CDS | 51355 | 51389 | 51355 | ID=Msa1365000-mRNA-1:cds;Parent=Msa1365000-mRNA-1 |
| tig0018197 | CDS | 51106 | 51250 | 51106 | ID=Msa1365000-mRNA-1:cds;Parent=Msa1365000-mRNA-1 |
| tig0018197 | CDS | 50620 | 50897 | 50620 | ID=Msa1365000-mRNA-1:cds;Parent=Msa1365000-mRNA-1 |
| tig0018197 | CDS | 49760 | 50545 | 49760 | ID=Msa1365000-mRNA-1:cds;Parent=Msa1365000-mRNA-1 |
| tig0018197 | CDS | 49303 | 49638 | 49303 | ID=Msa1365000-mRNA-1:cds;Parent=Msa1365000-mRNA-1 |
| tig0018197 | three_prime_UTR | 49069 | 49302 | 49069 | ID=Msa1365000-mRNA-1:three_prime_utr;Parent=Msa1365000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
