Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435580 | XP_024635160.1 | 93.961 | 563 | 22 | 7 | 20 | 575 | 2 | 559 | 0.0 | 1061 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435580 | sp|Q680B7|XYN4_ARATH | 35.622 | 539 | 317 | 12 | 54 | 571 | 32 | 561 | 6.02e-101 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435580 | A0A396J1W7 | 93.961 | 563 | 22 | 7 | 20 | 575 | 2 | 559 | 0.0 | 1061 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004360 | Msa1435580 | 0.800094 | 1.693217e-48 | -8.615850e-47 |
| Msa0030730 | Msa1435580 | 0.804848 | 1.774142e-49 | -8.615850e-47 |
| Msa0032120 | Msa1435580 | 0.810816 | 9.548650e-51 | -8.615850e-47 |
| Msa0032400 | Msa1435580 | 0.809555 | 1.785641e-50 | -8.615850e-47 |
| Msa0041540 | Msa1435580 | 0.819637 | 1.046264e-52 | -8.615850e-47 |
| Msa0050580 | Msa1435580 | 0.832825 | 7.579642e-56 | -8.615850e-47 |
| Msa0053110 | Msa1435580 | 0.811031 | 8.577625e-51 | -8.615850e-47 |
| Msa1365000 | Msa1435580 | 0.953010 | 7.011221e-111 | -8.615850e-47 |
| Msa1365870 | Msa1435580 | 0.825911 | 3.620699e-54 | -8.615850e-47 |
| Msa1367430 | Msa1435580 | 0.981924 | 8.673055e-154 | -8.615850e-47 |
| Msa1379990 | Msa1435580 | 0.805395 | 1.362555e-49 | -8.615850e-47 |
| Msa1382310 | Msa1435580 | 0.815310 | 9.871364e-52 | -8.615850e-47 |
| Msa1398480 | Msa1435580 | 0.827631 | 1.406550e-54 | -8.615850e-47 |
| Msa1417630 | Msa1435580 | 0.925729 | 1.236487e-90 | -8.615850e-47 |
| Msa1435580 | Msa1438360 | 0.822958 | 1.793119e-53 | -8.615850e-47 |
| Msa0607600 | Msa1435580 | -0.816373 | 5.717930e-52 | -8.615850e-47 |
| Msa0639370 | Msa1435580 | 0.821934 | 3.100798e-53 | -8.615850e-47 |
| Msa0642650 | Msa1435580 | 0.806633 | 7.483626e-50 | -8.615850e-47 |
| Msa0661470 | Msa1435580 | 0.825514 | 4.496911e-54 | -8.615850e-47 |
| Msa0667970 | Msa1435580 | 0.814289 | 1.661838e-51 | -8.615850e-47 |
| Msa0681890 | Msa1435580 | 0.800728 | 1.258006e-48 | -8.615850e-47 |
| Msa0682460 | Msa1435580 | 0.804469 | 2.127771e-49 | -8.615850e-47 |
| Msa0687860 | Msa1435580 | -0.818696 | 1.712913e-52 | -8.615850e-47 |
| Msa0703760 | Msa1435580 | 0.805148 | 1.535198e-49 | -8.615850e-47 |
| Msa0725920 | Msa1435580 | 0.819417 | 1.174411e-52 | -8.615850e-47 |
| Msa0747780 | Msa1435580 | 0.800813 | 1.208403e-48 | -8.615850e-47 |
| Msa0766470 | Msa1435580 | 0.814050 | 1.876604e-51 | -8.615850e-47 |
| Msa0802210 | Msa1435580 | 0.800425 | 1.450272e-48 | -8.615850e-47 |
| Msa0804110 | Msa1435580 | 0.808050 | 3.746306e-50 | -8.615850e-47 |
| Msa0135980 | Msa1435580 | 0.801569 | 8.462779e-49 | -8.615850e-47 |
| Msa0139900 | Msa1435580 | 0.822326 | 2.515532e-53 | -8.615850e-47 |
| Msa0177280 | Msa1435580 | 0.807907 | 4.017728e-50 | -8.615850e-47 |
| Msa0183610 | Msa1435580 | 0.804798 | 1.816819e-49 | -8.615850e-47 |
| Msa0185700 | Msa1435580 | 0.819738 | 9.919963e-53 | -8.615850e-47 |
| Msa1229700 | Msa1435580 | 0.811342 | 7.345599e-51 | -8.615850e-47 |
| Msa1271510 | Msa1435580 | 0.810635 | 1.045129e-50 | -8.615850e-47 |
| Msa1307370 | Msa1435580 | 0.800655 | 1.301876e-48 | -8.615850e-47 |
| Msa1315980 | Msa1435580 | 0.806849 | 6.736852e-50 | -8.615850e-47 |
| Msa0386270 | Msa1435580 | 0.828425 | 9.052906e-55 | -8.615850e-47 |
| Msa0436090 | Msa1435580 | 0.823924 | 1.065673e-53 | -8.615850e-47 |
| Msa1004500 | Msa1435580 | 0.814401 | 1.569947e-51 | -8.615850e-47 |
| Msa1004520 | Msa1435580 | 0.810890 | 9.202709e-51 | -8.615850e-47 |
| Msa1014270 | Msa1435580 | 0.801295 | 9.630563e-49 | -8.615850e-47 |
| Msa1018790 | Msa1435580 | 0.819880 | 9.207432e-53 | -8.615850e-47 |
| Msa0246690 | Msa1435580 | 0.807998 | 3.842632e-50 | -8.615850e-47 |
| Msa0277640 | Msa1435580 | 0.800439 | 1.440235e-48 | -8.615850e-47 |
| Msa0289780 | Msa1435580 | 0.800783 | 1.225471e-48 | -8.615850e-47 |
| Msa0327550 | Msa1435580 | 0.802703 | 4.946767e-49 | -8.615850e-47 |
| Msa1129560 | Msa1435580 | 0.803801 | 2.931316e-49 | -8.615850e-47 |
| Msa1134400 | Msa1435580 | 0.817598 | 3.035354e-52 | -8.615850e-47 |
| Msa1147270 | Msa1435580 | 0.807330 | 5.327272e-50 | -8.615850e-47 |
| Msa1159100 | Msa1435580 | 0.806892 | 6.595600e-50 | -8.615850e-47 |
| Msa1183390 | Msa1435580 | 0.808964 | 2.390276e-50 | -8.615850e-47 |
| Msa1197110 | Msa1435580 | 0.818714 | 1.696962e-52 | -8.615850e-47 |
| Msa0506760 | Msa1435580 | 0.823126 | 1.638513e-53 | -8.615850e-47 |
| Msa0524230 | Msa1435580 | 0.982408 | 5.148929e-155 | -8.615850e-47 |
| Msa0532840 | Msa1435580 | 0.830946 | 2.205352e-55 | -8.615850e-47 |
| Msa0533010 | Msa1435580 | 0.825069 | 5.729710e-54 | -8.615850e-47 |
| Msa0538570 | Msa1435580 | 0.814851 | 1.248318e-51 | -8.615850e-47 |
| Msa0546840 | Msa1435580 | 0.819690 | 1.017288e-52 | -8.615850e-47 |
| Msa0594390 | Msa1435580 | 0.817545 | 3.119175e-52 | -8.615850e-47 |
| Msa0848360 | Msa1435580 | 0.804300 | 2.308387e-49 | -8.615850e-47 |
| Msa0931480 | Msa1435580 | 0.814164 | 1.770811e-51 | -8.615850e-47 |
| Msa0937550 | Msa1435580 | 0.814694 | 1.351985e-51 | -8.615850e-47 |
| Msa0974750 | Msa1435580 | 0.805761 | 1.142188e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435580 | MtrunA17_Chr3g0145541 | 93.961 | 563 | 22 | 7 | 20 | 575 | 2 | 559 | 0.0 | 1061 |
| Msa1435580 | MtrunA17_Chr5g0421191 | 39.241 | 553 | 291 | 9 | 33 | 554 | 4 | 542 | 1.39e-131 | 396 |
| Msa1435580 | MtrunA17_Chr4g0037551 | 39.587 | 533 | 277 | 11 | 61 | 562 | 32 | 550 | 2.22e-128 | 388 |
| Msa1435580 | MtrunA17_Chr7g0223191 | 38.964 | 521 | 276 | 8 | 62 | 551 | 4 | 513 | 5.78e-127 | 383 |
| Msa1435580 | MtrunA17_Chr1g0207241 | 38.910 | 532 | 281 | 11 | 35 | 534 | 23 | 542 | 9.35e-116 | 356 |
| Msa1435580 | MtrunA17_Chr1g0207201 | 39.294 | 453 | 261 | 6 | 105 | 551 | 2 | 446 | 4.99e-111 | 340 |
| Msa1435580 | MtrunA17_Chr1g0207211 | 36.911 | 531 | 295 | 11 | 54 | 551 | 31 | 554 | 5.63e-111 | 343 |
| Msa1435580 | MtrunA17_Chr1g0207231 | 37.526 | 477 | 280 | 7 | 105 | 571 | 2 | 470 | 1.00e-109 | 336 |
| Msa1435580 | MtrunA17_Chr3g0135341 | 33.714 | 525 | 308 | 14 | 66 | 575 | 241 | 740 | 5.52e-77 | 258 |
| Msa1435580 | MtrunA17_Chr1g0151951 | 32.079 | 505 | 322 | 9 | 80 | 575 | 438 | 930 | 7.69e-76 | 258 |
| Msa1435580 | MtrunA17_Chr4g0068081 | 31.088 | 193 | 99 | 4 | 331 | 523 | 1 | 159 | 6.29e-22 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435580 | AT4G38650.1 | 65.434 | 541 | 180 | 3 | 42 | 575 | 22 | 562 | 0.0 | 755 |
| Msa1435580 | AT4G38300.1 | 71.483 | 263 | 64 | 2 | 204 | 465 | 12 | 264 | 1.08e-137 | 401 |
| Msa1435580 | AT4G33840.1 | 37.163 | 557 | 305 | 9 | 54 | 575 | 25 | 571 | 1.65e-131 | 396 |
| Msa1435580 | AT4G33830.1 | 38.768 | 552 | 292 | 11 | 54 | 570 | 26 | 566 | 3.10e-129 | 390 |
| Msa1435580 | AT4G33860.1 | 39.130 | 529 | 283 | 10 | 54 | 551 | 25 | 545 | 1.69e-127 | 386 |
| Msa1435580 | AT2G14690.1 | 35.622 | 539 | 317 | 12 | 54 | 571 | 32 | 561 | 6.12e-102 | 320 |
| Msa1435580 | AT4G33810.1 | 36.674 | 469 | 280 | 10 | 105 | 562 | 49 | 511 | 5.09e-100 | 313 |
| Msa1435580 | AT4G33810.5 | 36.674 | 469 | 280 | 10 | 105 | 562 | 49 | 511 | 5.09e-100 | 313 |
| Msa1435580 | AT4G33810.2 | 36.674 | 469 | 280 | 10 | 105 | 562 | 89 | 551 | 1.81e-99 | 313 |
| Msa1435580 | AT4G33810.3 | 36.674 | 469 | 280 | 10 | 105 | 562 | 89 | 551 | 1.81e-99 | 313 |
| Msa1435580 | AT4G33810.4 | 36.674 | 469 | 280 | 10 | 105 | 562 | 89 | 551 | 1.81e-99 | 313 |
| Msa1435580 | AT4G33820.1 | 37.063 | 429 | 258 | 7 | 105 | 527 | 89 | 511 | 5.38e-93 | 296 |
| Msa1435580 | AT1G58370.1 | 32.016 | 506 | 322 | 10 | 80 | 575 | 421 | 914 | 3.81e-78 | 265 |
| Msa1435580 | AT1G58370.2 | 32.016 | 506 | 322 | 10 | 80 | 575 | 449 | 942 | 6.33e-78 | 265 |
| Msa1435580 | AT1G10050.2 | 33.543 | 477 | 301 | 10 | 106 | 575 | 596 | 1063 | 1.11e-73 | 254 |
| Msa1435580 | AT1G10050.1 | 33.543 | 477 | 301 | 10 | 106 | 575 | 596 | 1063 | 1.11e-73 | 254 |
| Msa1435580 | AT1G10050.3 | 33.543 | 477 | 301 | 10 | 106 | 575 | 628 | 1095 | 1.14e-73 | 255 |
| Msa1435580 | AT4G08160.1 | 31.335 | 517 | 323 | 11 | 66 | 566 | 240 | 740 | 5.50e-69 | 237 |
| Msa1435580 | AT4G08160.2 | 33.489 | 427 | 266 | 8 | 66 | 483 | 240 | 657 | 1.62e-62 | 218 |
Find 142 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGGAGAATATAGAATT+AGG | 0.197889 | tig0027707:-49821 | Msa1435580:CDS |
| TTATTTGTAGGCAATTTATT+TGG | 0.199684 | tig0027707:-50060 | Msa1435580:intron |
| ACCCATGCAGGATTGTATTT+AGG | 0.215174 | tig0027707:+50642 | None:intergenic |
| GTACTACGTTTGAAAGTTAA+TGG | 0.228244 | tig0027707:+52104 | None:intergenic |
| GGGGTTTCTTCTTCTTTCTA+TGG | 0.261359 | tig0027707:-51901 | Msa1435580:intron |
| CCCATGCAGGATTGTATTTA+GGG | 0.265487 | tig0027707:+50643 | None:intergenic |
| TCTTTGAAAACGAGCTTAAA+TGG | 0.282741 | tig0027707:-50779 | Msa1435580:CDS |
| GCATGGGTTCTTAACCTTAC+AGG | 0.285919 | tig0027707:-50627 | Msa1435580:CDS |
| CTCCATTGGTGGTGAGTAAA+TGG | 0.299076 | tig0027707:+51082 | None:intergenic |
| CTCTAACAAATTGCATCATT+TGG | 0.305368 | tig0027707:+50709 | None:intergenic |
| CCTTGTAATTTCCTTCCATT+AGG | 0.307008 | tig0027707:+50921 | None:intergenic |
| TTCACAAACCAATTCTGATA+TGG | 0.315882 | tig0027707:+50819 | None:intergenic |
| AAGAGCTATCCTAGACAAAT+TGG | 0.323111 | tig0027707:-50262 | Msa1435580:CDS |
| TGTAAGCAGTAGAGTCATAT+AGG | 0.332357 | tig0027707:+51794 | None:intergenic |
| GCGATAGCAAAGACCATTCT+TGG | 0.334413 | tig0027707:-50849 | Msa1435580:CDS |
| CTTGTAATTTCCTTCCATTA+GGG | 0.341062 | tig0027707:+50922 | None:intergenic |
| CATTGTCTGTGAGGCACATT+TGG | 0.350045 | tig0027707:+49955 | None:intergenic |
| ATATCAAAAGACTTTCCTAT+TGG | 0.362210 | tig0027707:-50876 | Msa1435580:CDS |
| TTACATGAGCAGTTAAATAA+AGG | 0.364013 | tig0027707:-49615 | Msa1435580:three_prime_UTR |
| GCAACATACCATATCAGAAT+TGG | 0.364428 | tig0027707:-50827 | Msa1435580:CDS |
| GTAAGCAGTAGAGTCATATA+GGG | 0.368725 | tig0027707:+51795 | None:intergenic |
| GCTCTTATAAGTGGAAGATT+TGG | 0.368945 | tig0027707:+50279 | None:intergenic |
| CCACCGTAAAGTGGCTTCTC+TGG | 0.371358 | tig0027707:+51650 | None:intergenic |
| ATGAGACATATAACTGTATT+GGG | 0.377080 | tig0027707:-51249 | Msa1435580:CDS |
| TACAGATTCAGTTATGATAA+AGG | 0.377300 | tig0027707:-51290 | Msa1435580:CDS |
| TACTACGTTTGAAAGTTAAT+GGG | 0.377977 | tig0027707:+52105 | None:intergenic |
| TGGACAGCACTTCATCCATA+TGG | 0.380084 | tig0027707:-49984 | Msa1435580:CDS |
| AGTCACAGTCACGTGAGATT+TGG | 0.382876 | tig0027707:-52253 | Msa1435580:five_prime_UTR |
| CGTTTGAAAGTTAATGGGAT+TGG | 0.383246 | tig0027707:+52110 | None:intergenic |
| AATGAGACATATAACTGTAT+TGG | 0.393839 | tig0027707:-51250 | Msa1435580:CDS |
| CATCCAGAGAAGCCACTTTA+CGG | 0.403538 | tig0027707:-51653 | Msa1435580:CDS |
| CTTAGGAGAATATAGAATTA+GGG | 0.404134 | tig0027707:-49820 | Msa1435580:CDS |
| ACAGGGGACCAGTGAGGAAT+AGG | 0.404498 | tig0027707:+52174 | None:intergenic |
| AGGTTCTAGTGAAGAAGTTA+AGG | 0.410579 | tig0027707:+49688 | None:intergenic |
| ATCAGAATTGGTTTGTGAAA+CGG | 0.414114 | tig0027707:-50815 | Msa1435580:CDS |
| TGGCAAACTGGTCGTGTAGA+AGG | 0.419661 | tig0027707:-49882 | Msa1435580:CDS |
| CTTCTTCAAGAGTGGCAAAC+TGG | 0.421800 | tig0027707:-49894 | Msa1435580:CDS |
| CAGTGAATGGGATAATGCTT+TGG | 0.423472 | tig0027707:-50004 | Msa1435580:CDS |
| TGAACTAAGTGATGTTAATC+TGG | 0.429828 | tig0027707:-52296 | None:intergenic |
| ATTGGATTGGATTGGATTGG+AGG | 0.432882 | tig0027707:+52128 | None:intergenic |
| TTCTCACACCCTTCAGTGAA+TGG | 0.434692 | tig0027707:-50017 | Msa1435580:CDS |
| ATATCACAAGGGAACAGAAC+AGG | 0.434939 | tig0027707:+52156 | None:intergenic |
| GTTACAATTCTCCTTGAGAA+AGG | 0.439341 | tig0027707:+49668 | None:intergenic |
| CACATTTGGTAGCACCCATA+TGG | 0.442952 | tig0027707:+49969 | None:intergenic |
| CAACACTAGATCTTCCCGTT+TGG | 0.443376 | tig0027707:-50239 | Msa1435580:CDS |
| ATAAGAGAACTAAGACAATA+TGG | 0.448976 | tig0027707:-50345 | Msa1435580:CDS |
| GAAAGTTAATGGGATTGGAT+TGG | 0.453214 | tig0027707:+52115 | None:intergenic |
| TGCTACATTTCATTTCTTTG+AGG | 0.453293 | tig0027707:-50472 | Msa1435580:CDS |
| AAGAAATGAAATGTAGCATT+GGG | 0.454110 | tig0027707:+50477 | None:intergenic |
| TTCTTCACATGCTACAATAT+AGG | 0.454734 | tig0027707:+52209 | None:intergenic |
| CAGTGTTGATGATATATTGT+TGG | 0.461856 | tig0027707:+51053 | None:intergenic |
| GGGATTGGATTGGATTGGAT+TGG | 0.463586 | tig0027707:+52125 | None:intergenic |
| ATCAATCTCAGTAAGCCAAA+CGG | 0.466197 | tig0027707:+50224 | None:intergenic |
| ATCTTAACTGTGTACCTGTA+AGG | 0.467889 | tig0027707:+50613 | None:intergenic |
| TCAATCTCAGTAAGCCAAAC+GGG | 0.472110 | tig0027707:+50225 | None:intergenic |
| CTGTCTCTATCAACTCTGAT+TGG | 0.479768 | tig0027707:-49640 | Msa1435580:three_prime_UTR |
| AAAGAAATGAAATGTAGCAT+TGG | 0.480004 | tig0027707:+50476 | None:intergenic |
| CAAAACAGAATTCATACATT+GGG | 0.480784 | tig0027707:-50550 | Msa1435580:CDS |
| GATTTCTACGAACAAAGGCT+TGG | 0.482875 | tig0027707:-50501 | Msa1435580:CDS |
| CCACTTTACGGTGGAGGAGG+AGG | 0.484097 | tig0027707:-51641 | Msa1435580:CDS |
| GTTCATGTATCAGACCCTAA+TGG | 0.488462 | tig0027707:-50936 | Msa1435580:CDS |
| TTTGCTATCGCAGAGCCAAT+AGG | 0.489645 | tig0027707:+50861 | None:intergenic |
| TTTATTTGGAACAAGTATTG+AGG | 0.493659 | tig0027707:-50046 | Msa1435580:CDS |
| AAATGACCAACATCCACGTT+TGG | 0.493661 | tig0027707:+51216 | None:intergenic |
| GAAGTAGGTTGCATCATCCT+TGG | 0.493827 | tig0027707:+51976 | None:intergenic |
| AAATTAAGTCACAGTGTCAC+AGG | 0.494605 | tig0027707:+49729 | None:intergenic |
| GGACAGCACTTCATCCATAT+GGG | 0.495243 | tig0027707:-49983 | Msa1435580:CDS |
| TCTAGGATAGCTCTTATAAG+TGG | 0.496749 | tig0027707:+50270 | None:intergenic |
| GATTTCAACAACTTACCATC+AGG | 0.497916 | tig0027707:-49933 | Msa1435580:CDS |
| AAGCCACTTTACGGTGGAGG+AGG | 0.499159 | tig0027707:-51644 | Msa1435580:CDS |
| TTCATAAACAAAGTTGCTAA+AGG | 0.499339 | tig0027707:+50432 | None:intergenic |
| TCTTCTAGTTATAATACCGA+TGG | 0.501758 | tig0027707:-51923 | Msa1435580:CDS |
| TTAATGGGATTGGATTGGAT+TGG | 0.502425 | tig0027707:+52120 | None:intergenic |
| GTTGGTTGATTCTCCATTGG+TGG | 0.504409 | tig0027707:+51071 | None:intergenic |
| CCTCCTCCTCCACCGTAAAG+TGG | 0.507893 | tig0027707:+51641 | None:intergenic |
| ATTGTTGGTTGATTCTCCAT+TGG | 0.513327 | tig0027707:+51068 | None:intergenic |
| TGTTGGTCATTTCTCAAAGG+TGG | 0.513377 | tig0027707:-51205 | Msa1435580:CDS |
| TCTCACACCCTTCAGTGAAT+GGG | 0.515758 | tig0027707:-50016 | Msa1435580:CDS |
| TTATTTGGAACAAGTATTGA+GGG | 0.519096 | tig0027707:-50045 | Msa1435580:CDS |
| GGATTGGATTGGATTGGAGG+AGG | 0.522041 | tig0027707:+52131 | None:intergenic |
| ATCTGAGTTGTGAAAGAAGA+TGG | 0.523796 | tig0027707:+51150 | None:intergenic |
| CTAGTGTTGCCAATTTGTCT+AGG | 0.527390 | tig0027707:+50253 | None:intergenic |
| ATATGGTATGTTGCCAAGAA+TGG | 0.540598 | tig0027707:+50836 | None:intergenic |
| CTTCTAGTTATAATACCGAT+GGG | 0.541621 | tig0027707:-51922 | Msa1435580:CDS |
| ACTTTGATTTCTACGAACAA+AGG | 0.545752 | tig0027707:-50506 | Msa1435580:CDS |
| ACAAAACAGAATTCATACAT+TGG | 0.546953 | tig0027707:-50551 | Msa1435580:CDS |
| TCGGTATTATAACTAGAAGA+AGG | 0.551967 | tig0027707:+51926 | None:intergenic |
| AAGATGGTAGATGAATTTGA+AGG | 0.553423 | tig0027707:+51166 | None:intergenic |
| GAGAAGCCACTTTACGGTGG+AGG | 0.555307 | tig0027707:-51647 | Msa1435580:CDS |
| TTGGAACAAGTATTGAGGGA+AGG | 0.561612 | tig0027707:-50041 | Msa1435580:CDS |
| TATGGCTACTTAACTTAACA+CGG | 0.562500 | tig0027707:-52063 | Msa1435580:five_prime_UTR |
| AGCATTATCCCATTCACTGA+AGG | 0.566045 | tig0027707:+50008 | None:intergenic |
| ATCTTCTTTCACAACTCAGA+TGG | 0.566431 | tig0027707:-51148 | Msa1435580:CDS |
| AGATTATAGAAGACAAGTGA+AGG | 0.569889 | tig0027707:+51569 | None:intergenic |
| ACCCTAAATACAATCCTGCA+TGG | 0.572180 | tig0027707:-50644 | Msa1435580:CDS |
| ATGGATGGAATTGGTCTCGA+GGG | 0.573124 | tig0027707:-50315 | Msa1435580:CDS |
| ACGGGCATCCTATTCCTCAC+TGG | 0.573439 | tig0027707:-52182 | Msa1435580:five_prime_UTR |
| CTCAGATGGTAAAGATCATG+TGG | 0.575507 | tig0027707:-51134 | Msa1435580:CDS |
| CACACTTGATCATGATACTC+AGG | 0.577347 | tig0027707:-50193 | Msa1435580:intron |
| TATCACAAGGGAACAGAACA+GGG | 0.582185 | tig0027707:+52157 | None:intergenic |
| CTTCACTAGAACCTTTCTCA+AGG | 0.584604 | tig0027707:-49679 | Msa1435580:three_prime_UTR |
| CCTAATGGAAGGAAATTACA+AGG | 0.585093 | tig0027707:-50921 | Msa1435580:CDS |
| TCTAGTTATAATACCGATGG+GGG | 0.585265 | tig0027707:-51920 | Msa1435580:CDS |
| TCAACTTTCTCTCTATGTAG+AGG | 0.586344 | tig0027707:-49771 | Msa1435580:CDS |
| GCATTATCCCATTCACTGAA+GGG | 0.590706 | tig0027707:+50009 | None:intergenic |
| TTCTAGTTATAATACCGATG+GGG | 0.591385 | tig0027707:-51921 | Msa1435580:CDS |
| CAACTTACCATCAGGTGATG+TGG | 0.598575 | tig0027707:-49925 | Msa1435580:CDS |
| CCCTAAATACAATCCTGCAT+GGG | 0.602674 | tig0027707:-50643 | Msa1435580:CDS |
| GGATGTTGGTCATTTCTCAA+AGG | 0.605842 | tig0027707:-51208 | Msa1435580:CDS |
| GTCTGATACATGAACAGTGA+CGG | 0.610322 | tig0027707:+50944 | None:intergenic |
| TAGCATGTGAAGAAGAGCAC+GGG | 0.610956 | tig0027707:-52200 | Msa1435580:five_prime_UTR |
| TATGGATGGAATTGGTCTCG+AGG | 0.616485 | tig0027707:-50316 | Msa1435580:CDS |
| GCCAACAAAATCATAGCTAG+AGG | 0.617131 | tig0027707:-50687 | Msa1435580:CDS |
| CAACAACACCAACACGAACA+CGG | 0.618184 | tig0027707:-51597 | Msa1435580:CDS |
| TCTGCCTTCATGAGGCTCTG+TGG | 0.618660 | tig0027707:+50752 | None:intergenic |
| TTGGAGGAGGTGATATCACA+AGG | 0.621040 | tig0027707:+52144 | None:intergenic |
| ATGTATCAGACCCTAATGGA+AGG | 0.621861 | tig0027707:-50932 | Msa1435580:CDS |
| TAGTTGACTCTGCCTTCATG+AGG | 0.625434 | tig0027707:+50744 | None:intergenic |
| TGGATAAACTTCTTCAAGAG+TGG | 0.627938 | tig0027707:-49902 | Msa1435580:CDS |
| AATTAAGTCACAGTGTCACA+GGG | 0.628706 | tig0027707:+49730 | None:intergenic |
| TGAATGGTATGGAATGAAGT+AGG | 0.634785 | tig0027707:+51961 | None:intergenic |
| TATGCCACAGAGCCTCATGA+AGG | 0.641188 | tig0027707:-50756 | Msa1435580:CDS |
| TTATCCACCACATCACCTGA+TGG | 0.643051 | tig0027707:+49918 | None:intergenic |
| ATGGCTACTTAACTTAACAC+GGG | 0.644296 | tig0027707:-52062 | Msa1435580:five_prime_UTR |
| CTTACCATCAGGTGATGTGG+TGG | 0.645932 | tig0027707:-49922 | Msa1435580:CDS |
| TAAACAGCAGTACTAGTCCA+AGG | 0.645943 | tig0027707:-51993 | Msa1435580:CDS |
| AGCCATTTACTCACCACCAA+TGG | 0.646406 | tig0027707:-51084 | Msa1435580:CDS |
| ATTCAGTTATGATAAAGGCA+AGG | 0.650648 | tig0027707:-51285 | Msa1435580:CDS |
| GAAGGTATCACAGATGAGCA+TGG | 0.651877 | tig0027707:-49864 | Msa1435580:CDS |
| GTAGCATGTGAAGAAGAGCA+CGG | 0.653426 | tig0027707:-52201 | Msa1435580:five_prime_UTR |
| AGGTGAAGCCGTGTTCGTGT+TGG | 0.662305 | tig0027707:+51589 | None:intergenic |
| GTAAGGTTAAGAACCCATGC+AGG | 0.663112 | tig0027707:+50630 | None:intergenic |
| TAAGCAGTAGAGTCATATAG+GGG | 0.663519 | tig0027707:+51796 | None:intergenic |
| TGACTCTACTGCTTACACTC+AGG | 0.668323 | tig0027707:-51788 | Msa1435580:intron |
| GGCTGCTACAGTATGGGTGA+AGG | 0.668347 | tig0027707:-51320 | Msa1435580:intron |
| GCGTTGACGCTTATATCTCA+CGG | 0.669191 | tig0027707:-50368 | Msa1435580:CDS |
| CCAGAGAAGCCACTTTACGG+TGG | 0.680549 | tig0027707:-51650 | Msa1435580:CDS |
| AGAGTTGATAGAGACAGTTG+TGG | 0.708134 | tig0027707:+49646 | None:intergenic |
| AACAGAACAGGGGACCAGTG+AGG | 0.713722 | tig0027707:+52168 | None:intergenic |
| ATCACAAGGGAACAGAACAG+GGG | 0.724966 | tig0027707:+52158 | None:intergenic |
| TGTTGAAATCATTGTCTGTG+AGG | 0.726848 | tig0027707:+49946 | None:intergenic |
| TGGAGGAGGTGATATCACAA+GGG | 0.734851 | tig0027707:+52145 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATCTTTTTTTGTTTCATA+TGG | - | tig0027707:49705-49724 | Msa1435580:three_prime_UTR | 15.0% |
| !! | TAATGAATTGAATCAATAAA+AGG | + | tig0027707:49923-49942 | None:intergenic | 15.0% |
| !! | AGAAAAATATATGAATGGTA+TGG | + | tig0027707:49839-49858 | None:intergenic | 20.0% |
| !! | AAGGAAGAAAAATATATGAA+TGG | + | tig0027707:49844-49863 | None:intergenic | 20.0% |
| !!! | GATAGATAATATGTTGTTTT+TGG | + | tig0027707:50766-50785 | None:intergenic | 20.0% |
| !! | TTATTTGTAGGCAATTTATT+TGG | - | tig0027707:51726-51745 | Msa1435580:intron | 20.0% |
| ! | TACTACGTTTGAAAGTTAAT+GGG | + | tig0027707:49684-49703 | None:intergenic | 25.0% |
| ! | TACAGATTCAGTTATGATAA+AGG | - | tig0027707:50496-50515 | Msa1435580:CDS | 25.0% |
| ! | AATGAGACATATAACTGTAT+TGG | - | tig0027707:50536-50555 | Msa1435580:CDS | 25.0% |
| ! | ATGAGACATATAACTGTATT+GGG | - | tig0027707:50537-50556 | Msa1435580:CDS | 25.0% |
| ! | ATATCAAAAGACTTTCCTAT+TGG | - | tig0027707:50910-50929 | Msa1435580:CDS | 25.0% |
| !! | GTATGAATTCTGTTTTGTAT+TGG | + | tig0027707:51233-51252 | None:intergenic | 25.0% |
| ! | ACAAAACAGAATTCATACAT+TGG | - | tig0027707:51235-51254 | Msa1435580:CDS | 25.0% |
| ! | CAAAACAGAATTCATACATT+GGG | - | tig0027707:51236-51255 | Msa1435580:CDS | 25.0% |
| ! | AAGAAATGAAATGTAGCATT+GGG | + | tig0027707:51312-51331 | None:intergenic | 25.0% |
| ! | AAAGAAATGAAATGTAGCAT+TGG | + | tig0027707:51313-51332 | None:intergenic | 25.0% |
| ! | TTCATAAACAAAGTTGCTAA+AGG | + | tig0027707:51357-51376 | None:intergenic | 25.0% |
| ! | ATAAGAGAACTAAGACAATA+TGG | - | tig0027707:51441-51460 | Msa1435580:intron | 25.0% |
| !!! | AAGACAATATGGTGTTTTTA+TGG | - | tig0027707:51452-51471 | Msa1435580:intron | 25.0% |
| !! | TTTATTTGGAACAAGTATTG+AGG | - | tig0027707:51740-51759 | Msa1435580:intron | 25.0% |
| !!! | TTATTTGGAACAAGTATTGA+GGG | - | tig0027707:51741-51760 | Msa1435580:intron | 25.0% |
| ! | TCTTAGGAGAATATAGAATT+AGG | - | tig0027707:51965-51984 | Msa1435580:CDS | 25.0% |
| ! | CTTAGGAGAATATAGAATTA+GGG | - | tig0027707:51966-51985 | Msa1435580:CDS | 25.0% |
| ! | TTACATGAGCAGTTAAATAA+AGG | - | tig0027707:52171-52190 | Msa1435580:five_prime_UTR | 25.0% |
| TTCTTCACATGCTACAATAT+AGG | + | tig0027707:49580-49599 | None:intergenic | 30.0% | |
| GTACTACGTTTGAAAGTTAA+TGG | + | tig0027707:49685-49704 | None:intergenic | 30.0% | |
| TATGGCTACTTAACTTAACA+CGG | - | tig0027707:49723-49742 | Msa1435580:exon | 30.0% | |
| TCGGTATTATAACTAGAAGA+AGG | + | tig0027707:49863-49882 | None:intergenic | 30.0% | |
| ! | TCTTCTAGTTATAATACCGA+TGG | - | tig0027707:49863-49882 | Msa1435580:CDS | 30.0% |
| ! | CTTCTAGTTATAATACCGAT+GGG | - | tig0027707:49864-49883 | Msa1435580:CDS | 30.0% |
| ! | TTCTAGTTATAATACCGATG+GGG | - | tig0027707:49865-49884 | Msa1435580:CDS | 30.0% |
| AGATTATAGAAGACAAGTGA+AGG | + | tig0027707:50220-50239 | None:intergenic | 30.0% | |
| ! | GACACTATCTATTCTTTTTC+TGG | - | tig0027707:50247-50266 | Msa1435580:CDS | 30.0% |
| ATTAAAAATGATTCCGTTGC+CGG | - | tig0027707:50333-50352 | Msa1435580:CDS | 30.0% | |
| GGATTATTGTTGATGTCATT+GGG | - | tig0027707:50414-50433 | Msa1435580:CDS | 30.0% | |
| ATTCAGTTATGATAAAGGCA+AGG | - | tig0027707:50501-50520 | Msa1435580:CDS | 30.0% | |
| AAGATGGTAGATGAATTTGA+AGG | + | tig0027707:50623-50642 | None:intergenic | 30.0% | |
| !! | CAGTGTTGATGATATATTGT+TGG | + | tig0027707:50736-50755 | None:intergenic | 30.0% |
| CTTGTAATTTCCTTCCATTA+GGG | + | tig0027707:50867-50886 | None:intergenic | 30.0% | |
| TTCACAAACCAATTCTGATA+TGG | + | tig0027707:50970-50989 | None:intergenic | 30.0% | |
| !! | ATCAGAATTGGTTTGTGAAA+CGG | - | tig0027707:50971-50990 | Msa1435580:intron | 30.0% |
| ! | TCTTTGAAAACGAGCTTAAA+TGG | - | tig0027707:51007-51026 | Msa1435580:intron | 30.0% |
| CTCTAACAAATTGCATCATT+TGG | + | tig0027707:51080-51099 | None:intergenic | 30.0% | |
| ! | TAGAGGACACAATATTTTCT+GGG | - | tig0027707:51116-51135 | Msa1435580:CDS | 30.0% |
| ! | ACTTTGATTTCTACGAACAA+AGG | - | tig0027707:51280-51299 | Msa1435580:CDS | 30.0% |
| TGCTACATTTCATTTCTTTG+AGG | - | tig0027707:51314-51333 | Msa1435580:intron | 30.0% | |
| !! | CAATATGGTGTTTTTATGGA+TGG | - | tig0027707:51456-51475 | Msa1435580:intron | 30.0% |
| ! | TGCCTTCATTCTTTATTTGT+AGG | - | tig0027707:51714-51733 | Msa1435580:intron | 30.0% |
| TGCCTACAAATAAAGAATGA+AGG | + | tig0027707:51719-51738 | None:intergenic | 30.0% | |
| ! | ATGGTTCACATAGCTTTTAT+GGG | - | tig0027707:51941-51960 | Msa1435580:CDS | 30.0% |
| ! | TTAATGGGATTGGATTGGAT+TGG | + | tig0027707:49669-49688 | None:intergenic | 35.0% |
| GAAAGTTAATGGGATTGGAT+TGG | + | tig0027707:49674-49693 | None:intergenic | 35.0% | |
| CGTTTGAAAGTTAATGGGAT+TGG | + | tig0027707:49679-49698 | None:intergenic | 35.0% | |
| ATGGCTACTTAACTTAACAC+GGG | - | tig0027707:49724-49743 | Msa1435580:exon | 35.0% | |
| TGAATGGTATGGAATGAAGT+AGG | + | tig0027707:49828-49847 | None:intergenic | 35.0% | |
| TCTAGTTATAATACCGATGG+GGG | - | tig0027707:49866-49885 | Msa1435580:CDS | 35.0% | |
| !! | CGATATTGTTTTGTTGCAGA+TGG | - | tig0027707:49966-49985 | Msa1435580:CDS | 35.0% |
| TAAGCAGTAGAGTCATATAG+GGG | + | tig0027707:49993-50012 | None:intergenic | 35.0% | |
| GTAAGCAGTAGAGTCATATA+GGG | + | tig0027707:49994-50013 | None:intergenic | 35.0% | |
| TGTAAGCAGTAGAGTCATAT+AGG | + | tig0027707:49995-50014 | None:intergenic | 35.0% | |
| TTAAAAATGATTCCGTTGCC+GGG | - | tig0027707:50334-50353 | Msa1435580:CDS | 35.0% | |
| ATAATCCGTTGTAGTCTAGT+TGG | + | tig0027707:50401-50420 | None:intergenic | 35.0% | |
| CGGATTATTGTTGATGTCAT+TGG | - | tig0027707:50413-50432 | Msa1435580:CDS | 35.0% | |
| ATCTGAGTTGTGAAAGAAGA+TGG | + | tig0027707:50639-50658 | None:intergenic | 35.0% | |
| ATCTTCTTTCACAACTCAGA+TGG | - | tig0027707:50638-50657 | Msa1435580:CDS | 35.0% | |
| ! | ATTGTTGGTTGATTCTCCAT+TGG | + | tig0027707:50721-50740 | None:intergenic | 35.0% |
| CCTTGTAATTTCCTTCCATT+AGG | + | tig0027707:50868-50887 | None:intergenic | 35.0% | |
| CCTAATGGAAGGAAATTACA+AGG | - | tig0027707:50865-50884 | Msa1435580:CDS | 35.0% | |
| ATATGGTATGTTGCCAAGAA+TGG | + | tig0027707:50953-50972 | None:intergenic | 35.0% | |
| GCAACATACCATATCAGAAT+TGG | - | tig0027707:50959-50978 | Msa1435580:CDS | 35.0% | |
| ! | TCCTCTAGCTATGATTTTGT+TGG | + | tig0027707:51103-51122 | None:intergenic | 35.0% |
| ! | CTAGAGGACACAATATTTTC+TGG | - | tig0027707:51115-51134 | Msa1435580:CDS | 35.0% |
| ATCTTAACTGTGTACCTGTA+AGG | + | tig0027707:51176-51195 | None:intergenic | 35.0% | |
| !! | GGTGTTTTTATGGATGGAAT+TGG | - | tig0027707:51462-51481 | Msa1435580:intron | 35.0% |
| GCTCTTATAAGTGGAAGATT+TGG | + | tig0027707:51510-51529 | None:intergenic | 35.0% | |
| ! | TCTAGGATAGCTCTTATAAG+TGG | + | tig0027707:51519-51538 | None:intergenic | 35.0% |
| AAGAGCTATCCTAGACAAAT+TGG | - | tig0027707:51524-51543 | Msa1435580:intron | 35.0% | |
| ATCAATCTCAGTAAGCCAAA+CGG | + | tig0027707:51565-51584 | None:intergenic | 35.0% | |
| TGTTGAAATCATTGTCTGTG+AGG | + | tig0027707:51843-51862 | None:intergenic | 35.0% | |
| GATTTCAACAACTTACCATC+AGG | - | tig0027707:51853-51872 | Msa1435580:intron | 35.0% | |
| TGGATAAACTTCTTCAAGAG+TGG | - | tig0027707:51884-51903 | Msa1435580:intron | 35.0% | |
| ! | CATGGTTCACATAGCTTTTA+TGG | - | tig0027707:51940-51959 | Msa1435580:CDS | 35.0% |
| ! | CATAGCTTTTATGGGTTCTT+AGG | - | tig0027707:51949-51968 | Msa1435580:CDS | 35.0% |
| TCAACTTTCTCTCTATGTAG+AGG | - | tig0027707:52015-52034 | Msa1435580:CDS | 35.0% | |
| AATTAAGTCACAGTGTCACA+GGG | + | tig0027707:52059-52078 | None:intergenic | 35.0% | |
| AAATTAAGTCACAGTGTCAC+AGG | + | tig0027707:52060-52079 | None:intergenic | 35.0% | |
| ! | AGGTTCTAGTGAAGAAGTTA+AGG | + | tig0027707:52101-52120 | None:intergenic | 35.0% |
| GTTACAATTCTCCTTGAGAA+AGG | + | tig0027707:52121-52140 | None:intergenic | 35.0% | |
| TATCACAAGGGAACAGAACA+GGG | + | tig0027707:49632-49651 | None:intergenic | 40.0% | |
| ATATCACAAGGGAACAGAAC+AGG | + | tig0027707:49633-49652 | None:intergenic | 40.0% | |
| ! | ATTGGATTGGATTGGATTGG+AGG | + | tig0027707:49661-49680 | None:intergenic | 40.0% |
| TAAACAGCAGTACTAGTCCA+AGG | - | tig0027707:49793-49812 | Msa1435580:CDS | 40.0% | |
| AAAGAAGAAGAAACCCCCAT+CGG | + | tig0027707:49882-49901 | None:intergenic | 40.0% | |
| GGGGTTTCTTCTTCTTTCTA+TGG | - | tig0027707:49885-49904 | Msa1435580:CDS | 40.0% | |
| GTCTAGTTGGTTAGGATACT+CGG | + | tig0027707:50388-50407 | None:intergenic | 40.0% | |
| CCTAACCAACTAGACTACAA+CGG | - | tig0027707:50393-50412 | Msa1435580:CDS | 40.0% | |
| CACGTCAGCATATATAACGA+TGG | + | tig0027707:50447-50466 | None:intergenic | 40.0% | |
| CATCGTTATATATGCTGACG+TGG | - | tig0027707:50445-50464 | Msa1435580:CDS | 40.0% | |
| ! | TTTTAGCCAAACGTGGATGT+TGG | - | tig0027707:50564-50583 | Msa1435580:CDS | 40.0% |
| AAATGACCAACATCCACGTT+TGG | + | tig0027707:50573-50592 | None:intergenic | 40.0% | |
| GGATGTTGGTCATTTCTCAA+AGG | - | tig0027707:50578-50597 | Msa1435580:CDS | 40.0% | |
| TGTTGGTCATTTCTCAAAGG+TGG | - | tig0027707:50581-50600 | Msa1435580:CDS | 40.0% | |
| CTCAGATGGTAAAGATCATG+TGG | - | tig0027707:50652-50671 | Msa1435580:CDS | 40.0% | |
| GTCTGATACATGAACAGTGA+CGG | + | tig0027707:50845-50864 | None:intergenic | 40.0% | |
| GTTCATGTATCAGACCCTAA+TGG | - | tig0027707:50850-50869 | Msa1435580:CDS | 40.0% | |
| ATGTATCAGACCCTAATGGA+AGG | - | tig0027707:50854-50873 | Msa1435580:CDS | 40.0% | |
| GCCAACAAAATCATAGCTAG+AGG | - | tig0027707:51099-51118 | Msa1435580:CDS | 40.0% | |
| ACCCTAAATACAATCCTGCA+TGG | - | tig0027707:51142-51161 | Msa1435580:CDS | 40.0% | |
| CCCATGCAGGATTGTATTTA+GGG | + | tig0027707:51146-51165 | None:intergenic | 40.0% | |
| CCCTAAATACAATCCTGCAT+GGG | - | tig0027707:51143-51162 | Msa1435580:CDS | 40.0% | |
| ACCCATGCAGGATTGTATTT+AGG | + | tig0027707:51147-51166 | None:intergenic | 40.0% | |
| GATTTCTACGAACAAAGGCT+TGG | - | tig0027707:51285-51304 | Msa1435580:CDS | 40.0% | |
| CTAGTGTTGCCAATTTGTCT+AGG | + | tig0027707:51536-51555 | None:intergenic | 40.0% | |
| TCAATCTCAGTAAGCCAAAC+GGG | + | tig0027707:51564-51583 | None:intergenic | 40.0% | |
| CACACTTGATCATGATACTC+AGG | - | tig0027707:51593-51612 | Msa1435580:CDS | 40.0% | |
| TTGATCATGATACTCAGGTG+AGG | - | tig0027707:51598-51617 | Msa1435580:CDS | 40.0% | |
| !! | TTGGAACAAGTATTGAGGGA+AGG | - | tig0027707:51745-51764 | Msa1435580:intron | 40.0% |
| GCATTATCCCATTCACTGAA+GGG | + | tig0027707:51780-51799 | None:intergenic | 40.0% | |
| AGCATTATCCCATTCACTGA+AGG | + | tig0027707:51781-51800 | None:intergenic | 40.0% | |
| CAGTGAATGGGATAATGCTT+TGG | - | tig0027707:51782-51801 | Msa1435580:intron | 40.0% | |
| CTTCACTAGAACCTTTCTCA+AGG | - | tig0027707:52107-52126 | Msa1435580:five_prime_UTR | 40.0% | |
| !! | AGAGTTGATAGAGACAGTTG+TGG | + | tig0027707:52143-52162 | None:intergenic | 40.0% |
| CTGTCTCTATCAACTCTGAT+TGG | - | tig0027707:52146-52165 | Msa1435580:five_prime_UTR | 40.0% | |
| AGTCACAGTCACGTGAGATT+TGG | - | tig0027707:49533-49552 | Msa1435580:three_prime_UTR | 45.0% | |
| GTAGCATGTGAAGAAGAGCA+CGG | - | tig0027707:49585-49604 | Msa1435580:three_prime_UTR | 45.0% | |
| ! | TAGCATGTGAAGAAGAGCAC+GGG | - | tig0027707:49586-49605 | Msa1435580:three_prime_UTR | 45.0% |
| ATCACAAGGGAACAGAACAG+GGG | + | tig0027707:49631-49650 | None:intergenic | 45.0% | |
| TGGAGGAGGTGATATCACAA+GGG | + | tig0027707:49644-49663 | None:intergenic | 45.0% | |
| TTGGAGGAGGTGATATCACA+AGG | + | tig0027707:49645-49664 | None:intergenic | 45.0% | |
| ! | GGGATTGGATTGGATTGGAT+TGG | + | tig0027707:49664-49683 | None:intergenic | 45.0% |
| GAAGTAGGTTGCATCATCCT+TGG | + | tig0027707:49813-49832 | None:intergenic | 45.0% | |
| TGACTCTACTGCTTACACTC+AGG | - | tig0027707:49998-50017 | Msa1435580:CDS | 45.0% | |
| ! | CATCCAGAGAAGCCACTTTA+CGG | - | tig0027707:50133-50152 | Msa1435580:intron | 45.0% |
| CAACAACACCAACACGAACA+CGG | - | tig0027707:50189-50208 | Msa1435580:intron | 45.0% | |
| CCGTTGTAGTCTAGTTGGTT+AGG | + | tig0027707:50396-50415 | None:intergenic | 45.0% | |
| AGCCATTTACTCACCACCAA+TGG | - | tig0027707:50702-50721 | Msa1435580:CDS | 45.0% | |
| !! | CTCCATTGGTGGTGAGTAAA+TGG | + | tig0027707:50707-50726 | None:intergenic | 45.0% |
| ! | GTTGGTTGATTCTCCATTGG+TGG | + | tig0027707:50718-50737 | None:intergenic | 45.0% |
| ! | TTTGCTATCGCAGAGCCAAT+AGG | + | tig0027707:50928-50947 | None:intergenic | 45.0% |
| GCGATAGCAAAGACCATTCT+TGG | - | tig0027707:50937-50956 | Msa1435580:CDS | 45.0% | |
| ! | TAGTTGACTCTGCCTTCATG+AGG | + | tig0027707:51045-51064 | None:intergenic | 45.0% |
| GTAAGGTTAAGAACCCATGC+AGG | + | tig0027707:51159-51178 | None:intergenic | 45.0% | |
| GCATGGGTTCTTAACCTTAC+AGG | - | tig0027707:51159-51178 | Msa1435580:CDS | 45.0% | |
| ! | GCGTTGACGCTTATATCTCA+CGG | - | tig0027707:51418-51437 | Msa1435580:intron | 45.0% |
| ! | TATGGATGGAATTGGTCTCG+AGG | - | tig0027707:51470-51489 | Msa1435580:intron | 45.0% |
| ! | ATGGATGGAATTGGTCTCGA+GGG | - | tig0027707:51471-51490 | Msa1435580:intron | 45.0% |
| CAACACTAGATCTTCCCGTT+TGG | - | tig0027707:51547-51566 | Msa1435580:CDS | 45.0% | |
| TTCTCACACCCTTCAGTGAA+TGG | - | tig0027707:51769-51788 | Msa1435580:intron | 45.0% | |
| TCTCACACCCTTCAGTGAAT+GGG | - | tig0027707:51770-51789 | Msa1435580:intron | 45.0% | |
| TGGACAGCACTTCATCCATA+TGG | - | tig0027707:51802-51821 | Msa1435580:CDS | 45.0% | |
| GGACAGCACTTCATCCATAT+GGG | - | tig0027707:51803-51822 | Msa1435580:CDS | 45.0% | |
| ! | CACATTTGGTAGCACCCATA+TGG | + | tig0027707:51820-51839 | None:intergenic | 45.0% |
| CATTGTCTGTGAGGCACATT+TGG | + | tig0027707:51834-51853 | None:intergenic | 45.0% | |
| CAACTTACCATCAGGTGATG+TGG | - | tig0027707:51861-51880 | Msa1435580:intron | 45.0% | |
| TTATCCACCACATCACCTGA+TGG | + | tig0027707:51871-51890 | None:intergenic | 45.0% | |
| CTTCTTCAAGAGTGGCAAAC+TGG | - | tig0027707:51892-51911 | Msa1435580:intron | 45.0% | |
| !! | GAAGGTATCACAGATGAGCA+TGG | - | tig0027707:51922-51941 | Msa1435580:CDS | 45.0% |
| ! | GGATTGGATTGGATTGGAGG+AGG | + | tig0027707:49658-49677 | None:intergenic | 50.0% |
| CTACTGCTTACACTCAGGTG+AGG | - | tig0027707:50003-50022 | Msa1435580:CDS | 50.0% | |
| TGACGTGGCTGCTACAGTAT+GGG | - | tig0027707:50460-50479 | Msa1435580:CDS | 50.0% | |
| !! | GGGACAGTTTTAGCCAAACG+TGG | - | tig0027707:50557-50576 | Msa1435580:CDS | 50.0% |
| TATGCCACAGAGCCTCATGA+AGG | - | tig0027707:51030-51049 | Msa1435580:intron | 50.0% | |
| GTAGCTAGCTAGCTAGCTAG+AGG | - | tig0027707:51620-51639 | Msa1435580:CDS | 50.0% | |
| CTTACCATCAGGTGATGTGG+TGG | - | tig0027707:51864-51883 | Msa1435580:intron | 50.0% | |
| TGGCAAACTGGTCGTGTAGA+AGG | - | tig0027707:51904-51923 | Msa1435580:CDS | 50.0% | |
| ACGGGCATCCTATTCCTCAC+TGG | - | tig0027707:49604-49623 | Msa1435580:three_prime_UTR | 55.0% | |
| ACAGGGGACCAGTGAGGAAT+AGG | + | tig0027707:49615-49634 | None:intergenic | 55.0% | |
| AACAGAACAGGGGACCAGTG+AGG | + | tig0027707:49621-49640 | None:intergenic | 55.0% | |
| CCACCGTAAAGTGGCTTCTC+TGG | + | tig0027707:50139-50158 | None:intergenic | 55.0% | |
| ! | CCAGAGAAGCCACTTTACGG+TGG | - | tig0027707:50136-50155 | Msa1435580:intron | 55.0% |
| ! | GAGAAGCCACTTTACGGTGG+AGG | - | tig0027707:50139-50158 | Msa1435580:intron | 55.0% |
| ! | AAGCCACTTTACGGTGGAGG+AGG | - | tig0027707:50142-50161 | Msa1435580:intron | 55.0% |
| AGGTGAAGCCGTGTTCGTGT+TGG | + | tig0027707:50200-50219 | None:intergenic | 55.0% | |
| CTGACGTGGCTGCTACAGTA+TGG | - | tig0027707:50459-50478 | Msa1435580:CDS | 55.0% | |
| GGCTGCTACAGTATGGGTGA+AGG | - | tig0027707:50466-50485 | Msa1435580:CDS | 55.0% | |
| TCTGCCTTCATGAGGCTCTG+TGG | + | tig0027707:51037-51056 | None:intergenic | 55.0% | |
| CCTCCTCCTCCACCGTAAAG+TGG | + | tig0027707:50148-50167 | None:intergenic | 60.0% | |
| CCACTTTACGGTGGAGGAGG+AGG | - | tig0027707:50145-50164 | Msa1435580:intron | 60.0% | |
| AGAGACCCGGGTTCAAGTCC+CGG | + | tig0027707:50355-50374 | None:intergenic | 60.0% | |
| GGACTTGAACCCGGGTCTCT+CGG | - | tig0027707:50355-50374 | Msa1435580:CDS | 60.0% | |
| GACTTGAACCCGGGTCTCTC+GGG | - | tig0027707:50356-50375 | Msa1435580:CDS | 60.0% | |
| CCGGGTTCAAGTCCCGGCAA+CGG | + | tig0027707:50349-50368 | None:intergenic | 65.0% | |
| CCGTTGCCGGGACTTGAACC+CGG | - | tig0027707:50346-50365 | Msa1435580:CDS | 65.0% | |
| CGTTGCCGGGACTTGAACCC+GGG | - | tig0027707:50347-50366 | Msa1435580:CDS | 65.0% | |
| GGCTCTCACCCGAGAGACCC+GGG | + | tig0027707:50367-50386 | None:intergenic | 70.0% | |
| CGGCTCTCACCCGAGAGACC+CGG | + | tig0027707:50368-50387 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027707 | gene | 49503 | 52305 | 49503 | ID=Msa1435580;Name=Msa1435580 |
| tig0027707 | mRNA | 49503 | 52305 | 49503 | ID=Msa1435580-mRNA-1;Parent=Msa1435580;Name=Msa1435580-mRNA-1;_AED=0.08;_eAED=0.08;_QI=256|1|1|1|1|1|6|234|575 |
| tig0027707 | exon | 49503 | 50072 | 49503 | ID=Msa1435580-mRNA-1:exon:9784;Parent=Msa1435580-mRNA-1 |
| tig0027707 | exon | 50194 | 50979 | 50194 | ID=Msa1435580-mRNA-1:exon:9783;Parent=Msa1435580-mRNA-1 |
| tig0027707 | exon | 51054 | 51331 | 51054 | ID=Msa1435580-mRNA-1:exon:9782;Parent=Msa1435580-mRNA-1 |
| tig0027707 | exon | 51540 | 51684 | 51540 | ID=Msa1435580-mRNA-1:exon:9781;Parent=Msa1435580-mRNA-1 |
| tig0027707 | exon | 51789 | 51823 | 51789 | ID=Msa1435580-mRNA-1:exon:9780;Parent=Msa1435580-mRNA-1 |
| tig0027707 | exon | 51902 | 52305 | 51902 | ID=Msa1435580-mRNA-1:exon:9779;Parent=Msa1435580-mRNA-1 |
| tig0027707 | five_prime_UTR | 52050 | 52305 | 52050 | ID=Msa1435580-mRNA-1:five_prime_utr;Parent=Msa1435580-mRNA-1 |
| tig0027707 | CDS | 51902 | 52049 | 51902 | ID=Msa1435580-mRNA-1:cds;Parent=Msa1435580-mRNA-1 |
| tig0027707 | CDS | 51789 | 51823 | 51789 | ID=Msa1435580-mRNA-1:cds;Parent=Msa1435580-mRNA-1 |
| tig0027707 | CDS | 51540 | 51684 | 51540 | ID=Msa1435580-mRNA-1:cds;Parent=Msa1435580-mRNA-1 |
| tig0027707 | CDS | 51054 | 51331 | 51054 | ID=Msa1435580-mRNA-1:cds;Parent=Msa1435580-mRNA-1 |
| tig0027707 | CDS | 50194 | 50979 | 50194 | ID=Msa1435580-mRNA-1:cds;Parent=Msa1435580-mRNA-1 |
| tig0027707 | CDS | 49737 | 50072 | 49737 | ID=Msa1435580-mRNA-1:cds;Parent=Msa1435580-mRNA-1 |
| tig0027707 | three_prime_UTR | 49503 | 49736 | 49503 | ID=Msa1435580-mRNA-1:three_prime_utr;Parent=Msa1435580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
