Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593710 | XP_013455085.1 | 100.000 | 221 | 0 | 0 | 1 | 221 | 1 | 221 | 4.61e-165 | 464 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593710 | sp|O22152|YAB1_ARATH | 69.811 | 212 | 54 | 6 | 19 | 221 | 19 | 229 | 1.59e-95 | 281 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0593710 | TF | C2C2-YABBY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003470 | Msa0593710 | 0.832214 | 1.073971e-55 | -8.615850e-47 |
| Msa0005050 | Msa0593710 | 0.804892 | 1.736898e-49 | -8.615850e-47 |
| Msa0006870 | Msa0593710 | 0.822225 | 2.654654e-53 | -8.615850e-47 |
| Msa0017120 | Msa0593710 | 0.813400 | 2.609643e-51 | -8.615850e-47 |
| Msa0018220 | Msa0593710 | 0.816462 | 5.463179e-52 | -8.615850e-47 |
| Msa0041540 | Msa0593710 | 0.829511 | 4.940634e-55 | -8.615850e-47 |
| Msa0043680 | Msa0593710 | 0.816116 | 6.526470e-52 | -8.615850e-47 |
| Msa0052020 | Msa0593710 | 0.806707 | 7.218933e-50 | -8.615850e-47 |
| Msa0053110 | Msa0593710 | 0.818105 | 2.331259e-52 | -8.615850e-47 |
| Msa0065390 | Msa0593710 | 0.807965 | 3.906058e-50 | -8.615850e-47 |
| Msa0077410 | Msa0593710 | 0.839798 | 1.277368e-57 | -8.615850e-47 |
| Msa0092660 | Msa0593710 | 0.829585 | 4.740695e-55 | -8.615850e-47 |
| Msa0092680 | Msa0593710 | 0.801460 | 8.911182e-49 | -8.615850e-47 |
| Msa0092730 | Msa0593710 | 0.828816 | 7.285452e-55 | -8.615850e-47 |
| Msa0097050 | Msa0593710 | 0.818273 | 2.136029e-52 | -8.615850e-47 |
| Msa0098440 | Msa0593710 | 0.804395 | 2.205149e-49 | -8.615850e-47 |
| Msa0100570 | Msa0593710 | 0.826900 | 2.104869e-54 | -8.615850e-47 |
| Msa0100860 | Msa0593710 | 0.824715 | 6.945968e-54 | -8.615850e-47 |
| Msa0110710 | Msa0593710 | 0.811420 | 7.064466e-51 | -8.615850e-47 |
| Msa0125280 | Msa0593710 | 0.816739 | 4.734567e-52 | -8.615850e-47 |
| Msa0134040 | Msa0593710 | 0.816056 | 6.732628e-52 | -8.615850e-47 |
| Msa0135980 | Msa0593710 | 0.833510 | 5.117622e-56 | -8.615850e-47 |
| Msa0137600 | Msa0593710 | 0.819268 | 1.270068e-52 | -8.615850e-47 |
| Msa0139900 | Msa0593710 | 0.821730 | 3.455647e-53 | -8.615850e-47 |
| Msa0141670 | Msa0593710 | 0.804197 | 2.425276e-49 | -8.615850e-47 |
| Msa0143970 | Msa0593710 | 0.806668 | 7.357625e-50 | -8.615850e-47 |
| Msa0146470 | Msa0593710 | 0.821282 | 4.385686e-53 | -8.615850e-47 |
| Msa0150210 | Msa0593710 | 0.823541 | 1.310126e-53 | -8.615850e-47 |
| Msa0157020 | Msa0593710 | 0.821400 | 4.118877e-53 | -8.615850e-47 |
| Msa0170040 | Msa0593710 | 0.808257 | 3.385212e-50 | -8.615850e-47 |
| Msa0182270 | Msa0593710 | 0.807527 | 4.839387e-50 | -8.615850e-47 |
| Msa0203520 | Msa0593710 | 0.833991 | 3.878901e-56 | -8.615850e-47 |
| Msa0206080 | Msa0593710 | 0.815836 | 7.539212e-52 | -8.615850e-47 |
| Msa0206120 | Msa0593710 | 0.810731 | 9.962000e-51 | -8.615850e-47 |
| Msa0223390 | Msa0593710 | 0.802590 | 5.220747e-49 | -8.615850e-47 |
| Msa0230400 | Msa0593710 | 0.814511 | 1.484755e-51 | -8.615850e-47 |
| Msa0367370 | Msa0593710 | 0.816662 | 4.926448e-52 | -8.615850e-47 |
| Msa0370600 | Msa0593710 | 0.830751 | 2.461513e-55 | -8.615850e-47 |
| Msa0380060 | Msa0593710 | 0.834793 | 2.440268e-56 | -8.615850e-47 |
| Msa0382290 | Msa0593710 | 0.805179 | 1.512828e-49 | -8.615850e-47 |
| Msa0398590 | Msa0593710 | 0.851227 | 1.018111e-60 | -8.615850e-47 |
| Msa0408640 | Msa0593710 | 0.849729 | 2.682288e-60 | -8.615850e-47 |
| Msa0415930 | Msa0593710 | 0.807023 | 6.189989e-50 | -8.615850e-47 |
| Msa0417630 | Msa0593710 | 0.828312 | 9.640989e-55 | -8.615850e-47 |
| Msa0418200 | Msa0593710 | 0.830036 | 3.682483e-55 | -8.615850e-47 |
| Msa0418480 | Msa0593710 | 0.813880 | 2.045999e-51 | -8.615850e-47 |
| Msa0421790 | Msa0593710 | 0.802955 | 4.388841e-49 | -8.615850e-47 |
| Msa0428760 | Msa0593710 | -0.801832 | 7.476923e-49 | -8.615850e-47 |
| Msa0429270 | Msa0593710 | 0.845984 | 2.886431e-59 | -8.615850e-47 |
| Msa0431800 | Msa0593710 | 0.812041 | 5.174573e-51 | -8.615850e-47 |
| Msa0436450 | Msa0593710 | 0.807121 | 5.900487e-50 | -8.615850e-47 |
| Msa0439780 | Msa0593710 | 0.817788 | 2.749252e-52 | -8.615850e-47 |
| Msa0457870 | Msa0593710 | 0.839377 | 1.642984e-57 | -8.615850e-47 |
| Msa0464540 | Msa0593710 | 0.840721 | 7.331350e-58 | -8.615850e-47 |
| Msa0465860 | Msa0593710 | 0.806608 | 7.572427e-50 | -8.615850e-47 |
| Msa0246690 | Msa0593710 | 0.812752 | 3.620271e-51 | -8.615850e-47 |
| Msa0249270 | Msa0593710 | 0.837800 | 4.196649e-57 | -8.615850e-47 |
| Msa0257310 | Msa0593710 | 0.824367 | 8.387983e-54 | -8.615850e-47 |
| Msa0274780 | Msa0593710 | 0.810490 | 1.123440e-50 | -8.615850e-47 |
| Msa0351510 | Msa0593710 | 0.843150 | 1.672760e-58 | -8.615850e-47 |
| Msa0358230 | Msa0593710 | 0.815345 | 9.697053e-52 | -8.615850e-47 |
| Msa0361260 | Msa0593710 | 0.860348 | 2.199734e-63 | -8.615850e-47 |
| Msa0508400 | Msa0593710 | 0.816726 | 4.766102e-52 | -8.615850e-47 |
| Msa0510230 | Msa0593710 | 0.827865 | 1.235137e-54 | -8.615850e-47 |
| Msa0519200 | Msa0593710 | 0.838658 | 2.523833e-57 | -8.615850e-47 |
| Msa0524210 | Msa0593710 | 0.863539 | 2.315765e-64 | -8.615850e-47 |
| Msa0526130 | Msa0593710 | 0.831428 | 1.678625e-55 | -8.615850e-47 |
| Msa0528940 | Msa0593710 | 0.827674 | 1.373126e-54 | -8.615850e-47 |
| Msa0532840 | Msa0593710 | 0.816762 | 4.679315e-52 | -8.615850e-47 |
| Msa0533010 | Msa0593710 | 0.811056 | 8.470810e-51 | -8.615850e-47 |
| Msa0537270 | Msa0593710 | 0.974303 | 6.421944e-138 | -8.615850e-47 |
| Msa0538570 | Msa0593710 | 0.851708 | 7.441092e-61 | -8.615850e-47 |
| Msa0543850 | Msa0593710 | 0.840228 | 9.865836e-58 | -8.615850e-47 |
| Msa0544220 | Msa0593710 | 0.803356 | 3.624751e-49 | -8.615850e-47 |
| Msa0547050 | Msa0593710 | 0.834734 | 2.525905e-56 | -8.615850e-47 |
| Msa0561510 | Msa0593710 | 0.826840 | 2.174787e-54 | -8.615850e-47 |
| Msa0567290 | Msa0593710 | 0.811204 | 7.867777e-51 | -8.615850e-47 |
| Msa0593710 | Msa0594390 | 0.850879 | 1.276484e-60 | -8.615850e-47 |
| Msa0593710 | Msa0599690 | 0.807612 | 4.643120e-50 | -8.615850e-47 |
| Msa0593710 | Msa0600390 | 0.813778 | 2.155004e-51 | -8.615850e-47 |
| Msa0593710 | Msa0601110 | 0.875753 | 2.402613e-68 | -8.615850e-47 |
| Msa0593710 | Msa0601120 | 0.874052 | 9.125286e-68 | -8.615850e-47 |
| Msa0593710 | Msa0601780 | 0.809805 | 1.577718e-50 | -8.615850e-47 |
| Msa0593710 | Msa0619330 | 0.807670 | 4.513047e-50 | -8.615850e-47 |
| Msa0593710 | Msa0620270 | 0.814126 | 1.805818e-51 | -8.615850e-47 |
| Msa0593710 | Msa0633750 | 0.960407 | 1.598044e-118 | -8.615850e-47 |
| Msa0593710 | Msa0634270 | 0.841068 | 5.944735e-58 | -8.615850e-47 |
| Msa0593710 | Msa0640390 | 0.834433 | 3.006475e-56 | -8.615850e-47 |
| Msa0593710 | Msa0640880 | 0.818550 | 1.849262e-52 | -8.615850e-47 |
| Msa0593710 | Msa0640990 | 0.814995 | 1.159360e-51 | -8.615850e-47 |
| Msa0593710 | Msa0641620 | 0.877469 | 6.127279e-69 | -8.615850e-47 |
| Msa0593710 | Msa0642650 | 0.809338 | 1.987598e-50 | -8.615850e-47 |
| Msa0593710 | Msa0667970 | 0.801833 | 7.472941e-49 | -8.615850e-47 |
| Msa0593710 | Msa0672110 | 0.874140 | 8.523198e-68 | -8.615850e-47 |
| Msa0593710 | Msa0678890 | 0.837097 | 6.355126e-57 | -8.615850e-47 |
| Msa0593710 | Msa0680150 | 0.849287 | 3.562808e-60 | -8.615850e-47 |
| Msa0593710 | Msa0681890 | 0.847902 | 8.620797e-60 | -8.615850e-47 |
| Msa0593710 | Msa0700910 | 0.808074 | 3.703214e-50 | -8.615850e-47 |
| Msa0593710 | Msa0703720 | 0.803445 | 3.474074e-49 | -8.615850e-47 |
| Msa0593710 | Msa0703760 | 0.828551 | 8.444130e-55 | -8.615850e-47 |
| Msa0593710 | Msa0706580 | 0.820047 | 8.428963e-53 | -8.615850e-47 |
| Msa0593710 | Msa0722940 | 0.875463 | 3.020913e-68 | -8.615850e-47 |
| Msa0593710 | Msa0723150 | 0.877716 | 5.027952e-69 | -8.615850e-47 |
| Msa0593710 | Msa0730180 | 0.812782 | 3.565304e-51 | -8.615850e-47 |
| Msa0593710 | Msa0747780 | 0.815139 | 1.077512e-51 | -8.615850e-47 |
| Msa0593710 | Msa0761580 | 0.809847 | 1.545533e-50 | -8.615850e-47 |
| Msa0593710 | Msa0761790 | 0.801328 | 9.483825e-49 | -8.615850e-47 |
| Msa0593710 | Msa0799210 | 0.808320 | 3.281207e-50 | -8.615850e-47 |
| Msa0593710 | Msa0802500 | 0.804520 | 2.077053e-49 | -8.615850e-47 |
| Msa0593710 | Msa0803130 | 0.829944 | 3.876923e-55 | -8.615850e-47 |
| Msa0593710 | Msa0804110 | 0.819446 | 1.156822e-52 | -8.615850e-47 |
| Msa0593710 | Msa0841490 | 0.827679 | 1.369048e-54 | -8.615850e-47 |
| Msa0593710 | Msa0843290 | 0.848430 | 6.160143e-60 | -8.615850e-47 |
| Msa0593710 | Msa0872310 | 0.817213 | 3.705749e-52 | -8.615850e-47 |
| Msa0593710 | Msa0886880 | 0.803626 | 3.186070e-49 | -8.615850e-47 |
| Msa0593710 | Msa0905550 | 0.812687 | 3.740277e-51 | -8.615850e-47 |
| Msa0593710 | Msa0925160 | 0.809789 | 1.590438e-50 | -8.615850e-47 |
| Msa0593710 | Msa0930330 | 0.824374 | 8.355607e-54 | -8.615850e-47 |
| Msa0593710 | Msa0931480 | 0.853713 | 1.992337e-61 | -8.615850e-47 |
| Msa0593710 | Msa0937550 | 0.817934 | 2.548225e-52 | -8.615850e-47 |
| Msa0593710 | Msa0938430 | 0.820063 | 8.359716e-53 | -8.615850e-47 |
| Msa0593710 | Msa0951460 | 0.801683 | 8.019463e-49 | -8.615850e-47 |
| Msa0593710 | Msa0955260 | 0.822497 | 2.294651e-53 | -8.615850e-47 |
| Msa0593710 | Msa0972730 | 0.801948 | 7.075082e-49 | -8.615850e-47 |
| Msa0593710 | Msa0974750 | 0.823352 | 1.450323e-53 | -8.615850e-47 |
| Msa0593710 | Msa0990520 | 0.813948 | 1.976436e-51 | -8.615850e-47 |
| Msa0593710 | Msa0992590 | 0.811295 | 7.518186e-51 | -8.615850e-47 |
| Msa0593710 | Msa1004500 | 0.822250 | 2.619142e-53 | -8.615850e-47 |
| Msa0593710 | Msa1004520 | 0.813926 | 1.998451e-51 | -8.615850e-47 |
| Msa0593710 | Msa1014270 | 0.824054 | 9.936047e-54 | -8.615850e-47 |
| Msa0593710 | Msa1027790 | 0.839224 | 1.801039e-57 | -8.615850e-47 |
| Msa0593710 | Msa1028460 | 0.812254 | 4.650609e-51 | -8.615850e-47 |
| Msa0593710 | Msa1041530 | 0.804262 | 2.350434e-49 | -8.615850e-47 |
| Msa0593710 | Msa1045880 | 0.802115 | 6.538456e-49 | -8.615850e-47 |
| Msa0593710 | Msa1045970 | 0.807530 | 4.832996e-50 | -8.615850e-47 |
| Msa0593710 | Msa1046870 | 0.821195 | 4.594022e-53 | -8.615850e-47 |
| Msa0593710 | Msa1055260 | 0.801527 | 8.631919e-49 | -8.615850e-47 |
| Msa0593710 | Msa1061180 | 0.805862 | 1.087278e-49 | -8.615850e-47 |
| Msa0593710 | Msa1072080 | 0.818182 | 2.240349e-52 | -8.615850e-47 |
| Msa0593710 | Msa1084150 | 0.806561 | 7.748746e-50 | -8.615850e-47 |
| Msa0593710 | Msa1106560 | 0.825757 | 3.939271e-54 | -8.615850e-47 |
| Msa0593710 | Msa1106580 | 0.828417 | 9.097897e-55 | -8.615850e-47 |
| Msa0593710 | Msa1112610 | 0.841423 | 4.794757e-58 | -8.615850e-47 |
| Msa0593710 | Msa1127140 | 0.812582 | 3.943196e-51 | -8.615850e-47 |
| Msa0593710 | Msa1134400 | 0.808254 | 3.390618e-50 | -8.615850e-47 |
| Msa0593710 | Msa1159100 | 0.815246 | 1.019810e-51 | -8.615850e-47 |
| Msa0593710 | Msa1175750 | 0.815212 | 1.037726e-51 | -8.615850e-47 |
| Msa0593710 | Msa1183390 | 0.802469 | 5.527051e-49 | -8.615850e-47 |
| Msa0593710 | Msa1183610 | 0.810000 | 1.432375e-50 | -8.615850e-47 |
| Msa0593710 | Msa1197110 | 0.813153 | 2.957096e-51 | -8.615850e-47 |
| Msa0593710 | Msa1200920 | 0.826774 | 2.255079e-54 | -8.615850e-47 |
| Msa0593710 | Msa1219250 | 0.800209 | 1.604851e-48 | -8.615850e-47 |
| Msa0593710 | Msa1232860 | 0.821173 | 4.648183e-53 | -8.615850e-47 |
| Msa0593710 | Msa1235890 | 0.800626 | 1.319631e-48 | -8.615850e-47 |
| Msa0593710 | Msa1241680 | 0.833312 | 5.732500e-56 | -8.615850e-47 |
| Msa0593710 | Msa1257730 | 0.805808 | 1.116548e-49 | -8.615850e-47 |
| Msa0593710 | Msa1258810 | 0.803039 | 4.215756e-49 | -8.615850e-47 |
| Msa0593710 | Msa1271510 | 0.811911 | 5.524137e-51 | -8.615850e-47 |
| Msa0593710 | Msa1271600 | 0.804290 | 2.318934e-49 | -8.615850e-47 |
| Msa0593710 | Msa1272330 | 0.836536 | 8.832775e-57 | -8.615850e-47 |
| Msa0593710 | Msa1307370 | 0.816127 | 6.491048e-52 | -8.615850e-47 |
| Msa0593710 | Msa1315980 | 0.819646 | 1.040920e-52 | -8.615850e-47 |
| Msa0593710 | Msa1350670 | 0.811145 | 8.105049e-51 | -8.615850e-47 |
| Msa0593710 | Msa1354040 | 0.800357 | 1.497158e-48 | -8.615850e-47 |
| Msa0593710 | Msa1355400 | 0.836413 | 9.496296e-57 | -8.615850e-47 |
| Msa0593710 | Msa1365020 | 0.858642 | 7.158852e-63 | -8.615850e-47 |
| Msa0593710 | Msa1365870 | 0.806096 | 9.709476e-50 | -8.615850e-47 |
| Msa0593710 | Msa1367410 | 0.867653 | 1.167415e-65 | -8.615850e-47 |
| Msa0593710 | Msa1373510 | 0.801378 | 9.264296e-49 | -8.615850e-47 |
| Msa0593710 | Msa1379980 | 0.809635 | 1.716309e-50 | -8.615850e-47 |
| Msa0593710 | Msa1398840 | 0.806119 | 9.600455e-50 | -8.615850e-47 |
| Msa0593710 | Msa1405770 | 0.832427 | 9.511253e-56 | -8.615850e-47 |
| Msa0593710 | Msa1417650 | 0.871284 | 7.683679e-67 | -8.615850e-47 |
| Msa0593710 | Msa1418620 | 0.806382 | 8.450977e-50 | -8.615850e-47 |
| Msa0593710 | Msa1421810 | 0.820642 | 6.157658e-53 | -8.615850e-47 |
| Msa0593710 | Msa1434020 | 0.849217 | 3.726179e-60 | -8.615850e-47 |
| Msa0593710 | Msa1435050 | 0.809923 | 1.488494e-50 | -8.615850e-47 |
| Msa0593710 | Msa1439670 | 0.824093 | 9.728918e-54 | -8.615850e-47 |
| Msa0593710 | Msa1439680 | 0.814671 | 1.368133e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593710 | MtrunA17_Chr4g0011841 | 100.000 | 221 | 0 | 0 | 1 | 221 | 1 | 221 | 4.24e-169 | 464 |
| Msa0593710 | MtrunA17_Chr4g0056521 | 71.292 | 209 | 52 | 6 | 18 | 221 | 13 | 218 | 3.84e-93 | 271 |
| Msa0593710 | MtrunA17_Chr4g0063931 | 53.368 | 193 | 64 | 4 | 20 | 206 | 11 | 183 | 3.05e-60 | 187 |
| Msa0593710 | MtrunA17_Chr2g0322221 | 52.041 | 196 | 83 | 5 | 19 | 211 | 8 | 195 | 3.22e-57 | 179 |
| Msa0593710 | MtrunA17_Chr4g0025361 | 54.601 | 163 | 61 | 3 | 22 | 184 | 8 | 157 | 2.34e-51 | 164 |
| Msa0593710 | MtrunA17_Chr5g0413381 | 50.000 | 158 | 71 | 2 | 23 | 179 | 12 | 162 | 1.33e-46 | 152 |
| Msa0593710 | MtrunA17_Chr5g0419871 | 46.875 | 160 | 65 | 5 | 21 | 178 | 14 | 155 | 2.22e-35 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0593710 | AT2G45190.1 | 69.811 | 212 | 54 | 6 | 19 | 221 | 19 | 229 | 1.62e-96 | 281 |
| Msa0593710 | AT4G00180.1 | 62.661 | 233 | 59 | 10 | 8 | 219 | 13 | 238 | 1.16e-80 | 241 |
| Msa0593710 | AT4G00180.2 | 61.722 | 209 | 57 | 9 | 32 | 219 | 1 | 207 | 4.19e-68 | 208 |
| Msa0593710 | AT2G45190.2 | 66.265 | 166 | 46 | 6 | 65 | 221 | 1 | 165 | 9.56e-66 | 201 |
| Msa0593710 | AT2G26580.2 | 55.758 | 165 | 55 | 2 | 22 | 186 | 8 | 154 | 3.35e-56 | 176 |
| Msa0593710 | AT2G26580.1 | 55.758 | 165 | 55 | 2 | 22 | 186 | 8 | 154 | 3.35e-56 | 176 |
| Msa0593710 | AT1G08465.1 | 56.897 | 174 | 51 | 5 | 22 | 188 | 7 | 163 | 6.16e-56 | 176 |
| Msa0593710 | AT1G23420.1 | 46.584 | 161 | 84 | 2 | 24 | 182 | 20 | 180 | 7.25e-40 | 137 |
| Msa0593710 | AT1G23420.2 | 46.584 | 161 | 84 | 2 | 24 | 182 | 51 | 211 | 3.26e-39 | 136 |
| Msa0593710 | AT1G69180.1 | 39.490 | 157 | 77 | 2 | 22 | 178 | 18 | 156 | 9.05e-31 | 112 |
Find 77 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTCAAGTTGTTGGTTTA+TGG | 0.128435 | 4_2:+20057894 | Msa0593710:three_prime_UTR |
| CTATTAGCAGGTGGAGGTTT+AGG | 0.195251 | 4_2:-20055306 | None:intergenic |
| CGATGCTACTTAAGTATTAA+AGG | 0.214516 | 4_2:-20054215 | None:intergenic |
| CACTTTCCACACATTCATTT+CGG | 0.297543 | 4_2:+20057480 | Msa0593710:CDS |
| ATCATCAAATCATTTGGATT+TGG | 0.304994 | 4_2:-20055249 | None:intergenic |
| CTTCAACCCTCAAACTCTTA+TGG | 0.305185 | 4_2:+20054817 | Msa0593710:CDS |
| AGAGTTGTTGCTGTTGTTGC+TGG | 0.315337 | 4_2:-20054497 | None:intergenic |
| AAAGAAGGAAAAGACTTTCT+AGG | 0.330189 | 4_2:+20054182 | Msa0593710:five_prime_UTR |
| TATTAGCAGGTGGAGGTTTA+GGG | 0.330394 | 4_2:-20055305 | None:intergenic |
| GCCTCTCTGTGGCTTATATC+AGG | 0.334060 | 4_2:-20057248 | None:intergenic |
| GACTGATCAGTGAAGTTTCT+TGG | 0.340647 | 4_2:-20054356 | None:intergenic |
| TTCTTCACGGGTTGATGATC+AGG | 0.349751 | 4_2:-20057510 | None:intergenic |
| AACAAACACACTTCTTTAGT+AGG | 0.360387 | 4_2:-20057758 | None:intergenic |
| GTGTTCATCATCAAATCATT+TGG | 0.376681 | 4_2:-20055255 | None:intergenic |
| TTACTTGATGAAGCGGTTGT+AGG | 0.396976 | 4_2:-20056315 | None:intergenic |
| TGTCCAAGGTGAAGTTGATT+TGG | 0.407277 | 4_2:-20054788 | None:intergenic |
| TGATTGTTAAGTTACTGTTT+AGG | 0.410029 | 4_2:-20054280 | None:intergenic |
| TGTTGCTGTTGTTGCTGGTC+CGG | 0.423782 | 4_2:-20054492 | None:intergenic |
| GAGGACGTGCTTATGAAAGA+TGG | 0.432558 | 4_2:+20057703 | Msa0593710:CDS |
| GGAGATAAATATGAAAGAAA+AGG | 0.454485 | 4_2:-20054253 | None:intergenic |
| ACTGATCAGTGAAGTTTCTT+GGG | 0.455223 | 4_2:-20054355 | None:intergenic |
| TTCATCATCATGTTTGTTGA+AGG | 0.455442 | 4_2:-20055219 | None:intergenic |
| AATTTCTTACGTCTATTAGC+AGG | 0.457462 | 4_2:-20055318 | None:intergenic |
| TTGGTTTATGGTATAATGAA+TGG | 0.468807 | 4_2:+20057906 | Msa0593710:three_prime_UTR |
| GAGATCCAACGTATCAAAGC+TGG | 0.478771 | 4_2:+20057221 | Msa0593710:CDS |
| TGTTAAGTTACTGTTTAGGA+AGG | 0.483028 | 4_2:-20054276 | None:intergenic |
| GAAGAAAGCTAATGTTCGTC+AGG | 0.494623 | 4_2:+20057527 | Msa0593710:CDS |
| CGAACATTAGCTTTCTTCAC+GGG | 0.494923 | 4_2:-20057522 | None:intergenic |
| ACAAACACACTTCTTTAGTA+GGG | 0.496640 | 4_2:-20057757 | None:intergenic |
| AGATAGATATAAACTTCCTA+TGG | 0.499489 | 4_2:-20054315 | None:intergenic |
| GGAACTCTCTGTCTCTTCTC+CGG | 0.501243 | 4_2:-20056287 | None:intergenic |
| CGAAATGAATGTGTGGAAAG+TGG | 0.502844 | 4_2:-20057479 | None:intergenic |
| ACACATACCATAAGAGTTTG+AGG | 0.506984 | 4_2:-20054824 | None:intergenic |
| ATAAATAAAATATCAGCAAA+GGG | 0.507844 | 4_2:+20054157 | None:intergenic |
| TTGTTGCTGGTCCGGTGAAA+AGG | 0.508490 | 4_2:-20054484 | None:intergenic |
| AATAAATAAAATATCAGCAA+AGG | 0.510529 | 4_2:+20054156 | None:intergenic |
| TTAAGTTACTGTTTAGGAAG+GGG | 0.512648 | 4_2:-20054274 | None:intergenic |
| GGTATAATGAATGGTGGGAG+AGG | 0.513224 | 4_2:+20057915 | Msa0593710:three_prime_UTR |
| CACATACCATAAGAGTTTGA+GGG | 0.516195 | 4_2:-20054823 | None:intergenic |
| AGGTGAAGTTGATTTGGAGC+AGG | 0.517398 | 4_2:-20054782 | None:intergenic |
| ACAGCAACAACTCTCTCCTT+CGG | 0.518591 | 4_2:+20054506 | Msa0593710:CDS |
| TGCAATGGACATAACAAAGC+TGG | 0.526911 | 4_2:-20054530 | None:intergenic |
| CCATAAACCAACAACTTGAA+AGG | 0.529902 | 4_2:-20057894 | None:intergenic |
| GTTTATGGTATAATGAATGG+TGG | 0.530292 | 4_2:+20057909 | Msa0593710:three_prime_UTR |
| ATTAAACTTACTTGATGAAG+CGG | 0.531165 | 4_2:-20056322 | None:intergenic |
| ACGAACATTAGCTTTCTTCA+CGG | 0.533864 | 4_2:-20057523 | None:intergenic |
| GTTAAGTTACTGTTTAGGAA+GGG | 0.540423 | 4_2:-20054275 | None:intergenic |
| TTACGTCTATTAGCAGGTGG+AGG | 0.545636 | 4_2:-20055312 | None:intergenic |
| CTGGTCCGGTGAAAAGGAAG+TGG | 0.549720 | 4_2:-20054478 | None:intergenic |
| AGGACGTGCTTATGAAAGAT+GGG | 0.553995 | 4_2:+20057704 | Msa0593710:CDS |
| TTTCATTGTGTAGGATTCAG+AGG | 0.560695 | 4_2:+20057684 | Msa0593710:intron |
| ATGAAGCGGTTGTAGGCAGA+TGG | 0.560728 | 4_2:-20056308 | None:intergenic |
| TTCTTACGTCTATTAGCAGG+TGG | 0.566691 | 4_2:-20055315 | None:intergenic |
| GATTCCCAGCTTTGATACGT+TGG | 0.580008 | 4_2:-20057226 | None:intergenic |
| GAAGTTGATTTGGAGCAGGA+AGG | 0.583401 | 4_2:-20054778 | None:intergenic |
| ACAGTAACTTAACAATCAAG+AGG | 0.585860 | 4_2:+20054285 | Msa0593710:five_prime_UTR |
| AAAGGAAGTGGATGATGAAG+AGG | 0.587043 | 4_2:-20054466 | None:intergenic |
| TATCAGCAAAGGGAGAAAGA+AGG | 0.589220 | 4_2:+20054167 | Msa0593710:five_prime_UTR |
| GCTCCAAATCAACTTCACCT+TGG | 0.591195 | 4_2:+20054785 | Msa0593710:CDS |
| AGATCCAACGTATCAAAGCT+GGG | 0.600203 | 4_2:+20057222 | Msa0593710:CDS |
| ATCAAGAGGATCAGATCCAT+AGG | 0.607359 | 4_2:+20054299 | Msa0593710:five_prime_UTR |
| GAAATGAATGTGTGGAAAGT+GGG | 0.615090 | 4_2:-20057478 | None:intergenic |
| ATGATGAACACAATGAGAGG+AGG | 0.619560 | 4_2:+20055267 | Msa0593710:CDS |
| CACGCATGTTAACTGAGAGA+AGG | 0.621310 | 4_2:-20054748 | None:intergenic |
| CATGTTAACTGAGAGAAGGT+TGG | 0.622869 | 4_2:-20054744 | None:intergenic |
| TGATGAACACAATGAGAGGA+GGG | 0.625320 | 4_2:+20055268 | Msa0593710:CDS |
| ACATAACAAAGCTGGTCCGA+AGG | 0.642303 | 4_2:-20054522 | None:intergenic |
| GGTTGAAGTAAGTGTGTCCA+AGG | 0.648511 | 4_2:-20054802 | None:intergenic |
| GTCTTGAACAAACTTGTGCA+AGG | 0.649953 | 4_2:-20054695 | None:intergenic |
| TTTATGGTATAATGAATGGT+GGG | 0.650395 | 4_2:+20057910 | Msa0593710:three_prime_UTR |
| CAGTGTCACAGAAATTGCAA+TGG | 0.650774 | 4_2:-20054545 | None:intergenic |
| TTTCTGTGACACTGTTCTCG+CGG | 0.670363 | 4_2:+20054554 | Msa0593710:CDS |
| CTGCACTAAAAGCCTCTCTG+TGG | 0.673003 | 4_2:-20057259 | None:intergenic |
| AAGACTGTGACAGTGAGATG+TGG | 0.685505 | 4_2:+20054713 | Msa0593710:CDS |
| TTGATGATGAACACAATGAG+AGG | 0.686722 | 4_2:+20055264 | Msa0593710:CDS |
| TCCTGATATAAGCCACAGAG+AGG | 0.691291 | 4_2:+20057247 | Msa0593710:CDS |
| ATAAGTCCGAAATGAATGTG+TGG | 0.723401 | 4_2:-20057486 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATAATTTTTAATTTTTAT+TGG | + | chr4_2:20057372-20057391 | Msa0593710:intron | 0.0% |
| !!! | TATAATTTTTAATTTTTATT+GGG | + | chr4_2:20057373-20057392 | Msa0593710:intron | 0.0% |
| !! | ATCTTAACTATTAATTAAAA+GGG | - | chr4_2:20054630-20054649 | None:intergenic | 10.0% |
| !! | AATCTTAACTATTAATTAAA+AGG | - | chr4_2:20054631-20054650 | None:intergenic | 10.0% |
| !!! | TTTTTTATTTTGTTTTTCTT+AGG | + | chr4_2:20054664-20054683 | Msa0593710:intron | 10.0% |
| !! | ATCAATTTATAAAATTATCT+AGG | + | chr4_2:20055030-20055049 | Msa0593710:intron | 10.0% |
| !! | TTCTTTATCAAAAAAAAAAT+TGG | + | chr4_2:20055883-20055902 | Msa0593710:intron | 10.0% |
| !!! | AAATCTATTTAAACTTTTTT+AGG | + | chr4_2:20055996-20056015 | Msa0593710:intron | 10.0% |
| !!! | CATTATTTTCTTTTTTTTTT+TGG | + | chr4_2:20056378-20056397 | Msa0593710:intron | 10.0% |
| !!! | CTAAACATTTTTTTTTATTA+CGG | + | chr4_2:20057047-20057066 | Msa0593710:intron | 10.0% |
| !!! | AATTGAAAATAATCTAAAAT+GGG | - | chr4_2:20057342-20057361 | None:intergenic | 10.0% |
| !! | AAATTGAAAATAATCTAAAA+TGG | - | chr4_2:20057343-20057362 | None:intergenic | 10.0% |
| !! | GAAAAAAAAAAGAAAAAAAA+AGG | - | chr4_2:20057595-20057614 | None:intergenic | 10.0% |
| !!! | ATAAATATATATAGTTTGCT+TGG | - | chr4_2:20054948-20054967 | None:intergenic | 15.0% |
| !!! | TGTTTAGTATTTTTGTATTT+TGG | + | chr4_2:20055085-20055104 | Msa0593710:intron | 15.0% |
| !!! | ATTTTTGTATTTTGGAAATT+AGG | + | chr4_2:20055093-20055112 | Msa0593710:intron | 15.0% |
| !! | GGTTTAATTAATTATTATTC+AGG | + | chr4_2:20055179-20055198 | Msa0593710:intron | 15.0% |
| !! | TTAATTAATTATTATTCAGG+AGG | + | chr4_2:20055182-20055201 | Msa0593710:intron | 15.0% |
| !! | CTCTAATTTGAAAATAATAT+TGG | - | chr4_2:20055843-20055862 | None:intergenic | 15.0% |
| !!! | TTTTTTGATAAAGAAAATGT+TGG | - | chr4_2:20055878-20055897 | None:intergenic | 15.0% |
| !! | TACTTCAAAATATTTACTAA+AGG | + | chr4_2:20055957-20055976 | Msa0593710:intron | 15.0% |
| !!! | CATTCATTTTAAGTTATTTA+TGG | + | chr4_2:20056347-20056366 | Msa0593710:intron | 15.0% |
| !!! | TTTTTTTACTAAAAATGGTA+TGG | + | chr4_2:20056950-20056969 | Msa0593710:intron | 15.0% |
| !!! | TTTTTTACTAAAAATGGTAT+GGG | + | chr4_2:20056951-20056970 | Msa0593710:intron | 15.0% |
| !!! | TTTTTTTACTAAAAATGGTA+TGG | + | chr4_2:20056950-20056969 | Msa0593710:intron | 15.0% |
| !! | AAGAAAAATAAATTCATAAG+TGG | - | chr4_2:20057075-20057094 | None:intergenic | 15.0% |
| !!! | AATCAAATCATATTTTATCA+AGG | - | chr4_2:20057192-20057211 | None:intergenic | 15.0% |
| !!! | TAAAATATGATTTGATTTTC+AGG | + | chr4_2:20057195-20057214 | Msa0593710:intron | 15.0% |
| !!! | AAAATATGATTTGATTTTCA+GGG | + | chr4_2:20057196-20057215 | Msa0593710:intron | 15.0% |
| !!! | GATTTTTTGATTTGATTGAT+GGG | - | chr4_2:20054385-20054404 | None:intergenic | 20.0% |
| !!! | TGATTTTTTGATTTGATTGA+TGG | - | chr4_2:20054386-20054405 | None:intergenic | 20.0% |
| !! | AAAAATCAAGAATTCAGAAA+AGG | + | chr4_2:20054398-20054417 | Msa0593710:five_prime_UTR | 20.0% |
| !!! | TTGTATTTGAATGGATTATT+TGG | + | chr4_2:20054992-20055011 | Msa0593710:intron | 20.0% |
| !!! | TATATAACTATCTTTTGAGT+TGG | + | chr4_2:20055116-20055135 | Msa0593710:intron | 20.0% |
| !! | ATTATGAGAAATGAGAAATT+TGG | + | chr4_2:20055158-20055177 | Msa0593710:intron | 20.0% |
| !!! | TTTTGCTTTTCTTCATTAAT+TGG | - | chr4_2:20055623-20055642 | None:intergenic | 20.0% |
| !!! | TTTTCAAATGAGTTTTGATA+GGG | - | chr4_2:20055670-20055689 | None:intergenic | 20.0% |
| !!! | ATTTTCAAATGAGTTTTGAT+AGG | - | chr4_2:20055671-20055690 | None:intergenic | 20.0% |
| !! | AAAGAAAATGTTGGAAATTA+GGG | - | chr4_2:20055869-20055888 | None:intergenic | 20.0% |
| !! | TAAAGAAAATGTTGGAAATT+AGG | - | chr4_2:20055870-20055889 | None:intergenic | 20.0% |
| !! | AGAGAAAAATTATAATGATG+AGG | + | chr4_2:20056136-20056155 | Msa0593710:intron | 20.0% |
| !! | ATACCCTAATATTTAAAGAA+TGG | + | chr4_2:20056547-20056566 | Msa0593710:intron | 20.0% |
| !! | TACCCTAATATTTAAAGAAT+GGG | + | chr4_2:20056548-20056567 | Msa0593710:intron | 20.0% |
| !!! | ATGATAATGATTTCCTTTTT+TGG | - | chr4_2:20056610-20056629 | None:intergenic | 20.0% |
| !! | AAGGAAATCATTATCATAAA+AGG | + | chr4_2:20056613-20056632 | Msa0593710:intron | 20.0% |
| !!! | GTTGATAATTCATTTAACTT+TGG | + | chr4_2:20057109-20057128 | Msa0593710:intron | 20.0% |
| !!! | TGTATTATTTTCTCATTTGT+GGG | + | chr4_2:20057431-20057450 | Msa0593710:intron | 20.0% |
| !!! | TCTTTTTTTTTTCTTCCTTT+TGG | + | chr4_2:20057602-20057621 | Msa0593710:intron | 20.0% |
| ! | GGAGATAAATATGAAAGAAA+AGG | - | chr4_2:20054256-20054275 | None:intergenic | 25.0% |
| ! | TGATTGTTAAGTTACTGTTT+AGG | - | chr4_2:20054283-20054302 | None:intergenic | 25.0% |
| ! | AGATAGATATAAACTTCCTA+TGG | - | chr4_2:20054318-20054337 | None:intergenic | 25.0% |
| ! | CTTGAAGATTTGTATTTGAA+TGG | + | chr4_2:20054983-20055002 | Msa0593710:intron | 25.0% |
| ! | CAAAAATACTAAACAACCAT+AGG | - | chr4_2:20055080-20055099 | None:intergenic | 25.0% |
| ! | ATCATCAAATCATTTGGATT+TGG | - | chr4_2:20055252-20055271 | None:intergenic | 25.0% |
| !! | AACTCAAAAGAAGTGTAAAA+TGG | - | chr4_2:20055582-20055601 | None:intergenic | 25.0% |
| ! | CAAAAAAGAGAAGGAAAAAA+AGG | + | chr4_2:20055638-20055657 | Msa0593710:intron | 25.0% |
| ! | ATTAAACTTACTTGATGAAG+CGG | - | chr4_2:20056325-20056344 | None:intergenic | 25.0% |
| ! | GACCCATTCTTTAAATATTA+GGG | - | chr4_2:20056553-20056572 | None:intergenic | 25.0% |
| ! | TGACCCATTCTTTAAATATT+AGG | - | chr4_2:20056554-20056573 | None:intergenic | 25.0% |
| ! | ACTGGTTAAACATACTAAAA+AGG | - | chr4_2:20056703-20056722 | None:intergenic | 25.0% |
| ! | ACTCTTGATAAATTCCTTAA+GGG | - | chr4_2:20056750-20056769 | None:intergenic | 25.0% |
| ! | TACTCTTGATAAATTCCTTA+AGG | - | chr4_2:20056751-20056770 | None:intergenic | 25.0% |
| !!! | CAACATTTCTTTTTTGACAA+AGG | + | chr4_2:20056771-20056790 | Msa0593710:intron | 25.0% |
| ! | GAACTTCAAAAAATGTTCAA+AGG | - | chr4_2:20057016-20057035 | None:intergenic | 25.0% |
| !! | GATAATTCATTTAACTTTGG+TGG | + | chr4_2:20057112-20057131 | Msa0593710:intron | 25.0% |
| ! | AGTAAGATTCAGAATTTCAT+TGG | - | chr4_2:20057303-20057322 | None:intergenic | 25.0% |
| !! | AGTACACATTTTTATTGCAT+CGG | + | chr4_2:20057408-20057427 | Msa0593710:intron | 25.0% |
| !! | GTGTATTATTTTCTCATTTG+TGG | + | chr4_2:20057430-20057449 | Msa0593710:intron | 25.0% |
| !! | GTATTATTTTCTCATTTGTG+GGG | + | chr4_2:20057432-20057451 | Msa0593710:intron | 25.0% |
| !!! | TCCATTTATTTTCTTTCAGT+GGG | + | chr4_2:20057455-20057474 | Msa0593710:intron | 25.0% |
| !! | AAAGCATAACTCTTATTTCT+AGG | + | chr4_2:20057641-20057660 | Msa0593710:intron | 25.0% |
| !!! | AAGCATAACTCTTATTTCTA+GGG | + | chr4_2:20057642-20057661 | Msa0593710:intron | 25.0% |
| !! | CTACACAATGAAAGAATTTT+AGG | - | chr4_2:20057677-20057696 | None:intergenic | 25.0% |
| ! | CTAAAATTCTTTCATTGTGT+AGG | + | chr4_2:20057675-20057694 | Msa0593710:intron | 25.0% |
| !!! | TGTGTTTGTTTTATTGTGTA+GGG | + | chr4_2:20057771-20057790 | Msa0593710:three_prime_UTR | 25.0% |
| !!! | TTTTTATCCTTTCAAGTTGT+TGG | + | chr4_2:20057887-20057906 | Msa0593710:three_prime_UTR | 25.0% |
| ! | TTGGTTTATGGTATAATGAA+TGG | + | chr4_2:20057906-20057925 | Msa0593710:three_prime_UTR | 25.0% |
| ! | TTTATGGTATAATGAATGGT+GGG | + | chr4_2:20057910-20057929 | Msa0593710:three_prime_UTR | 25.0% |
| AAAGAAGGAAAAGACTTTCT+AGG | + | chr4_2:20054182-20054201 | Msa0593710:five_prime_UTR | 30.0% | |
| ! | CGATGCTACTTAAGTATTAA+AGG | - | chr4_2:20054218-20054237 | None:intergenic | 30.0% |
| TTAAGTTACTGTTTAGGAAG+GGG | - | chr4_2:20054277-20054296 | None:intergenic | 30.0% | |
| GTTAAGTTACTGTTTAGGAA+GGG | - | chr4_2:20054278-20054297 | None:intergenic | 30.0% | |
| TGTTAAGTTACTGTTTAGGA+AGG | - | chr4_2:20054279-20054298 | None:intergenic | 30.0% | |
| ACAGTAACTTAACAATCAAG+AGG | + | chr4_2:20054285-20054304 | Msa0593710:five_prime_UTR | 30.0% | |
| ! | GTTTATAAAGAGAAAGTGTG+AGG | - | chr4_2:20054593-20054612 | None:intergenic | 30.0% |
| !! | GCTGAAACATTTTTAAGAAG+AGG | - | chr4_2:20054922-20054941 | None:intergenic | 30.0% |
| !! | GTTAATTTTTGTTGTGCCTA+TGG | + | chr4_2:20055061-20055080 | Msa0593710:intron | 30.0% |
| !!! | ACTATCTTTTGAGTTGGAAT+CGG | + | chr4_2:20055122-20055141 | Msa0593710:intron | 30.0% |
| ! | TTCATCATCATGTTTGTTGA+AGG | - | chr4_2:20055222-20055241 | None:intergenic | 30.0% |
| GTGTTCATCATCAAATCATT+TGG | - | chr4_2:20055258-20055277 | None:intergenic | 30.0% | |
| AATTTCTTACGTCTATTAGC+AGG | - | chr4_2:20055321-20055340 | None:intergenic | 30.0% | |
| GAAGAAAAGCAAAAAAGAGA+AGG | + | chr4_2:20055629-20055648 | Msa0593710:intron | 30.0% | |
| TTTCTTGATGTACTTCAAAG+TGG | + | chr4_2:20055702-20055721 | Msa0593710:intron | 30.0% | |
| AAAAATAGAGCTGAATCCAT+TGG | + | chr4_2:20056099-20056118 | Msa0593710:intron | 30.0% | |
| ACAATTTAATTGTGGAGAAG+TGG | + | chr4_2:20056428-20056447 | Msa0593710:intron | 30.0% | |
| ! | ATATCGCATTTTATATGCAG+GGG | - | chr4_2:20056477-20056496 | None:intergenic | 30.0% |
| ! | GATATCGCATTTTATATGCA+GGG | - | chr4_2:20056478-20056497 | None:intergenic | 30.0% |
| ATTCTGAATCTTACTCTCTT+AGG | + | chr4_2:20057308-20057327 | Msa0593710:intron | 30.0% | |
| !! | GTCCATTTATTTTCTTTCAG+TGG | + | chr4_2:20057454-20057473 | Msa0593710:intron | 30.0% |
| TAAATGTAGATAGCTAGCTA+GGG | - | chr4_2:20057564-20057583 | None:intergenic | 30.0% | |
| ! | TTTTTCACACAAGCAAATGT+AGG | + | chr4_2:20057727-20057746 | Msa0593710:CDS | 30.0% |
| ACAAACACACTTCTTTAGTA+GGG | - | chr4_2:20057760-20057779 | None:intergenic | 30.0% | |
| AACAAACACACTTCTTTAGT+AGG | - | chr4_2:20057761-20057780 | None:intergenic | 30.0% | |
| !!! | GTGTGTTTGTTTTATTGTGT+AGG | + | chr4_2:20057770-20057789 | Msa0593710:three_prime_UTR | 30.0% |
| GTTTATGGTATAATGAATGG+TGG | + | chr4_2:20057909-20057928 | Msa0593710:three_prime_UTR | 30.0% | |
| ACTGATCAGTGAAGTTTCTT+GGG | - | chr4_2:20054358-20054377 | None:intergenic | 35.0% | |
| CACATACCATAAGAGTTTGA+GGG | - | chr4_2:20054826-20054845 | None:intergenic | 35.0% | |
| ACACATACCATAAGAGTTTG+AGG | - | chr4_2:20054827-20054846 | None:intergenic | 35.0% | |
| AGTTGTCAGAGTTTGAATCT+CGG | + | chr4_2:20054895-20054914 | Msa0593710:intron | 35.0% | |
| !!! | TTTTGAGTTGGAATCGGAAA+GGG | + | chr4_2:20055128-20055147 | Msa0593710:intron | 35.0% |
| !! | TTGATGATGAACACAATGAG+AGG | + | chr4_2:20055264-20055283 | Msa0593710:CDS | 35.0% |
| ACATGAGAAATGGTGAAGAA+GGG | - | chr4_2:20055445-20055464 | None:intergenic | 35.0% | |
| TACATGAGAAATGGTGAAGA+AGG | - | chr4_2:20055446-20055465 | None:intergenic | 35.0% | |
| AGCATAGCATACATGAGAAA+TGG | - | chr4_2:20055455-20055474 | None:intergenic | 35.0% | |
| ! | TTTTGATGCCATCATGAGAA+AGG | + | chr4_2:20055518-20055537 | Msa0593710:intron | 35.0% |
| ! | TTTTCCTACCTTTCTCATGA+TGG | - | chr4_2:20055529-20055548 | None:intergenic | 35.0% |
| GAAGTGTAAAATGGACAGAA+GGG | - | chr4_2:20055573-20055592 | None:intergenic | 35.0% | |
| ! | AGAAGTGTAAAATGGACAGA+AGG | - | chr4_2:20055574-20055593 | None:intergenic | 35.0% |
| !! | CAAATGAGTTTTGATAGGGA+TGG | - | chr4_2:20055666-20055685 | None:intergenic | 35.0% |
| !! | TCATTTTTCAGCCCTAGATT+TGG | - | chr4_2:20055921-20055940 | None:intergenic | 35.0% |
| !! | TGGATTCAGCTCTATTTTTC+CGG | - | chr4_2:20056098-20056117 | None:intergenic | 35.0% |
| ! | GAAAGAAGAGAGTTCTGATT+AGG | + | chr4_2:20056200-20056219 | Msa0593710:intron | 35.0% |
| GAGCTCACACAATTTAATTG+TGG | + | chr4_2:20056420-20056439 | Msa0593710:intron | 35.0% | |
| ! | GGATATCGCATTTTATATGC+AGG | - | chr4_2:20056479-20056498 | None:intergenic | 35.0% |
| CTGGTTAAGCATACCAAAAA+AGG | + | chr4_2:20056594-20056613 | Msa0593710:intron | 35.0% | |
| GCCCACTGAAAGAAAATAAA+TGG | - | chr4_2:20057459-20057478 | None:intergenic | 35.0% | |
| GAAATGAATGTGTGGAAAGT+GGG | - | chr4_2:20057481-20057500 | None:intergenic | 35.0% | |
| CACTTTCCACACATTCATTT+CGG | + | chr4_2:20057480-20057499 | Msa0593710:CDS | 35.0% | |
| ATAAGTCCGAAATGAATGTG+TGG | - | chr4_2:20057489-20057508 | None:intergenic | 35.0% | |
| !! | ACGAACATTAGCTTTCTTCA+CGG | - | chr4_2:20057526-20057545 | None:intergenic | 35.0% |
| GTAAATGTAGATAGCTAGCT+AGG | - | chr4_2:20057565-20057584 | None:intergenic | 35.0% | |
| TCATTTAATGTGCTGCCAAA+AGG | - | chr4_2:20057620-20057639 | None:intergenic | 35.0% | |
| TTTCATTGTGTAGGATTCAG+AGG | + | chr4_2:20057684-20057703 | Msa0593710:intron | 35.0% | |
| CCATAAACCAACAACTTGAA+AGG | - | chr4_2:20057897-20057916 | None:intergenic | 35.0% | |
| !! | CCTTTCAAGTTGTTGGTTTA+TGG | + | chr4_2:20057894-20057913 | Msa0593710:three_prime_UTR | 35.0% |
| TATCAGCAAAGGGAGAAAGA+AGG | + | chr4_2:20054167-20054186 | Msa0593710:five_prime_UTR | 40.0% | |
| ATCAAGAGGATCAGATCCAT+AGG | + | chr4_2:20054299-20054318 | Msa0593710:five_prime_UTR | 40.0% | |
| GACTGATCAGTGAAGTTTCT+TGG | - | chr4_2:20054359-20054378 | None:intergenic | 40.0% | |
| AAAGGAAGTGGATGATGAAG+AGG | - | chr4_2:20054469-20054488 | None:intergenic | 40.0% | |
| ! | ATCATCCACTTCCTTTTCAC+CGG | + | chr4_2:20054473-20054492 | Msa0593710:CDS | 40.0% |
| TGCAATGGACATAACAAAGC+TGG | - | chr4_2:20054533-20054552 | None:intergenic | 40.0% | |
| CAGTGTCACAGAAATTGCAA+TGG | - | chr4_2:20054548-20054567 | None:intergenic | 40.0% | |
| GTCTTGAACAAACTTGTGCA+AGG | - | chr4_2:20054698-20054717 | None:intergenic | 40.0% | |
| CATGTTAACTGAGAGAAGGT+TGG | - | chr4_2:20054747-20054766 | None:intergenic | 40.0% | |
| ! | TGTCCAAGGTGAAGTTGATT+TGG | - | chr4_2:20054791-20054810 | None:intergenic | 40.0% |
| CTTCAACCCTCAAACTCTTA+TGG | + | chr4_2:20054817-20054836 | Msa0593710:CDS | 40.0% | |
| !!! | CTTTTGAGTTGGAATCGGAA+AGG | + | chr4_2:20055127-20055146 | Msa0593710:intron | 40.0% |
| ATGATGAACACAATGAGAGG+AGG | + | chr4_2:20055267-20055286 | Msa0593710:CDS | 40.0% | |
| TGATGAACACAATGAGAGGA+GGG | + | chr4_2:20055268-20055287 | Msa0593710:CDS | 40.0% | |
| TATTAGCAGGTGGAGGTTTA+GGG | - | chr4_2:20055308-20055327 | None:intergenic | 40.0% | |
| TTCTTACGTCTATTAGCAGG+TGG | - | chr4_2:20055318-20055337 | None:intergenic | 40.0% | |
| AAAATGGACAGAAGGGTTTC+AGG | - | chr4_2:20055566-20055585 | None:intergenic | 40.0% | |
| AGAAGCCGTATACCAAATCT+AGG | + | chr4_2:20055906-20055925 | Msa0593710:intron | 40.0% | |
| GAAGCCGTATACCAAATCTA+GGG | + | chr4_2:20055907-20055926 | Msa0593710:intron | 40.0% | |
| ! | TCAGCCCTAGATTTGGTATA+CGG | - | chr4_2:20055914-20055933 | None:intergenic | 40.0% |
| TCACTCAATGTTTGCATGCA+AGG | - | chr4_2:20056060-20056079 | None:intergenic | 40.0% | |
| !! | ATTCAGCTCTATTTTTCCGG+GGG | - | chr4_2:20056095-20056114 | None:intergenic | 40.0% |
| !! | GATTCAGCTCTATTTTTCCG+GGG | - | chr4_2:20056096-20056115 | None:intergenic | 40.0% |
| !! | GGATTCAGCTCTATTTTTCC+GGG | - | chr4_2:20056097-20056116 | None:intergenic | 40.0% |
| CTCTAACAATCACTCTCCAA+TGG | - | chr4_2:20056118-20056137 | None:intergenic | 40.0% | |
| TTACTTGATGAAGCGGTTGT+AGG | - | chr4_2:20056318-20056337 | None:intergenic | 40.0% | |
| AAAGAATGGGTCATGCTAAC+CGG | + | chr4_2:20056561-20056580 | Msa0593710:intron | 40.0% | |
| AGATCCAACGTATCAAAGCT+GGG | + | chr4_2:20057222-20057241 | Msa0593710:CDS | 40.0% | |
| CGAAATGAATGTGTGGAAAG+TGG | - | chr4_2:20057482-20057501 | None:intergenic | 40.0% | |
| !! | CGAACATTAGCTTTCTTCAC+GGG | - | chr4_2:20057525-20057544 | None:intergenic | 40.0% |
| GAAGAAAGCTAATGTTCGTC+AGG | + | chr4_2:20057527-20057546 | Msa0593710:CDS | 40.0% | |
| AGGACGTGCTTATGAAAGAT+GGG | + | chr4_2:20057704-20057723 | Msa0593710:CDS | 40.0% | |
| ! | AGAGTTGTTGCTGTTGTTGC+TGG | - | chr4_2:20054500-20054519 | None:intergenic | 45.0% |
| ACAGCAACAACTCTCTCCTT+CGG | + | chr4_2:20054506-20054525 | Msa0593710:CDS | 45.0% | |
| ACATAACAAAGCTGGTCCGA+AGG | - | chr4_2:20054525-20054544 | None:intergenic | 45.0% | |
| TTTCTGTGACACTGTTCTCG+CGG | + | chr4_2:20054554-20054573 | Msa0593710:CDS | 45.0% | |
| AAGACTGTGACAGTGAGATG+TGG | + | chr4_2:20054713-20054732 | Msa0593710:CDS | 45.0% | |
| CACGCATGTTAACTGAGAGA+AGG | - | chr4_2:20054751-20054770 | None:intergenic | 45.0% | |
| !! | GAAGTTGATTTGGAGCAGGA+AGG | - | chr4_2:20054781-20054800 | None:intergenic | 45.0% |
| !! | AGGTGAAGTTGATTTGGAGC+AGG | - | chr4_2:20054785-20054804 | None:intergenic | 45.0% |
| GCTCCAAATCAACTTCACCT+TGG | + | chr4_2:20054785-20054804 | Msa0593710:CDS | 45.0% | |
| GGTTGAAGTAAGTGTGTCCA+AGG | - | chr4_2:20054805-20054824 | None:intergenic | 45.0% | |
| CTATTAGCAGGTGGAGGTTT+AGG | - | chr4_2:20055309-20055328 | None:intergenic | 45.0% | |
| TTACGTCTATTAGCAGGTGG+AGG | - | chr4_2:20055315-20055334 | None:intergenic | 45.0% | |
| GATGCCATCATGAGAAAGGT+AGG | + | chr4_2:20055522-20055541 | Msa0593710:intron | 45.0% | |
| ! | TTGTGTGAGCTCTAGTCACT+AGG | - | chr4_2:20056412-20056431 | None:intergenic | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+GGG | - | chr4_2:20056500-20056519 | None:intergenic | 45.0% |
| TACCAACTGAGCTAAGCTCA+CGG | + | chr4_2:20056500-20056519 | Msa0593710:intron | 45.0% | |
| AGTATGTTTAACCAGTGCCC+CGG | + | chr4_2:20056707-20056726 | Msa0593710:intron | 45.0% | |
| AACGGCTAGCATTTCCCTTA+AGG | + | chr4_2:20056733-20056752 | Msa0593710:intron | 45.0% | |
| GAGATCCAACGTATCAAAGC+TGG | + | chr4_2:20057221-20057240 | Msa0593710:CDS | 45.0% | |
| ! | GATTCCCAGCTTTGATACGT+TGG | - | chr4_2:20057229-20057248 | None:intergenic | 45.0% |
| TCCTGATATAAGCCACAGAG+AGG | + | chr4_2:20057247-20057266 | Msa0593710:CDS | 45.0% | |
| !! | TTCTTCACGGGTTGATGATC+AGG | - | chr4_2:20057513-20057532 | None:intergenic | 45.0% |
| GAGGACGTGCTTATGAAAGA+TGG | + | chr4_2:20057703-20057722 | Msa0593710:CDS | 45.0% | |
| ! | GGTATAATGAATGGTGGGAG+AGG | + | chr4_2:20057915-20057934 | Msa0593710:three_prime_UTR | 45.0% |
| !!! | AGTATTTTTTTTAATTAATT+TGG | - | chr4_2:20055815-20055834 | None:intergenic | 5.0% |
| !!! | ATAAACATTTTTTATTTTTA+TGG | + | chr4_2:20056812-20056831 | Msa0593710:intron | 5.0% |
| !!! | TTATTTTTTTTTACTAAAAA+TGG | + | chr4_2:20056945-20056964 | Msa0593710:intron | 5.0% |
| !!! | TTTTTTTTTTTTACTAAAAA+TGG | + | chr4_2:20056981-20057000 | Msa0593710:intron | 5.0% |
| TTGTTGCTGGTCCGGTGAAA+AGG | - | chr4_2:20054487-20054506 | None:intergenic | 50.0% | |
| ! | TGTTGCTGTTGTTGCTGGTC+CGG | - | chr4_2:20054495-20054514 | None:intergenic | 50.0% |
| GTGAGACAGAATTCTTCCCC+CGG | + | chr4_2:20056076-20056095 | Msa0593710:intron | 50.0% | |
| CATTGCTCAGGCAAACAGAC+AGG | - | chr4_2:20056244-20056263 | None:intergenic | 50.0% | |
| CAAACACACGGACATTGCTC+AGG | - | chr4_2:20056256-20056275 | None:intergenic | 50.0% | |
| GAGCTGGACAAGCAAACACA+CGG | - | chr4_2:20056268-20056287 | None:intergenic | 50.0% | |
| TGTGTTTGCTTGTCCAGCTC+CGG | + | chr4_2:20056268-20056287 | Msa0593710:intron | 50.0% | |
| GGAACTCTCTGTCTCTTCTC+CGG | - | chr4_2:20056290-20056309 | None:intergenic | 50.0% | |
| ATGAAGCGGTTGTAGGCAGA+TGG | - | chr4_2:20056311-20056330 | None:intergenic | 50.0% | |
| ! | TTGTGGAGAAGTGGAGTGTC+CGG | + | chr4_2:20056437-20056456 | Msa0593710:intron | 50.0% |
| ! | CATTTTATATGCAGGGGCCG+GGG | - | chr4_2:20056471-20056490 | None:intergenic | 50.0% |
| ! | GCATTTTATATGCAGGGGCC+GGG | - | chr4_2:20056472-20056491 | None:intergenic | 50.0% |
| ! | CGCATTTTATATGCAGGGGC+CGG | - | chr4_2:20056473-20056492 | None:intergenic | 50.0% |
| GTGAGCTTAGCTCAGTTGGT+AGG | - | chr4_2:20056501-20056520 | None:intergenic | 50.0% | |
| GTATGTTTAACCAGTGCCCC+GGG | + | chr4_2:20056708-20056727 | Msa0593710:intron | 50.0% | |
| TATGTTTAACCAGTGCCCCG+GGG | + | chr4_2:20056709-20056728 | Msa0593710:intron | 50.0% | |
| GCCTCTCTGTGGCTTATATC+AGG | - | chr4_2:20057251-20057270 | None:intergenic | 50.0% | |
| CTGCACTAAAAGCCTCTCTG+TGG | - | chr4_2:20057262-20057281 | None:intergenic | 50.0% | |
| CTGGTCCGGTGAAAAGGAAG+TGG | - | chr4_2:20054481-20054500 | None:intergenic | 55.0% | |
| ! | TGTGGAGAAGTGGAGTGTCC+GGG | + | chr4_2:20056438-20056457 | Msa0593710:intron | 55.0% |
| CTCCGTGAGCTTAGCTCAGT+TGG | - | chr4_2:20056505-20056524 | None:intergenic | 55.0% | |
| CTGAGCTAAGCTCACGGAGA+TGG | + | chr4_2:20056506-20056525 | Msa0593710:intron | 55.0% | |
| GGGTCATGCTAACCGGTGTT+CGG | + | chr4_2:20056568-20056587 | Msa0593710:intron | 55.0% | |
| GGTCATGCTAACCGGTGTTC+GGG | + | chr4_2:20056569-20056588 | Msa0593710:intron | 55.0% | |
| CTTAACCAGTGCCCGAACAC+CGG | - | chr4_2:20056583-20056602 | None:intergenic | 55.0% | |
| CTCTGTCTCTTCTCCGGAGC+TGG | - | chr4_2:20056284-20056303 | None:intergenic | 60.0% | |
| ! | GTGGAGAAGTGGAGTGTCCG+GGG | + | chr4_2:20056439-20056458 | Msa0593710:intron | 60.0% |
| AAATGCTAGCCGTTGCCCCG+GGG | - | chr4_2:20056727-20056746 | None:intergenic | 60.0% | |
| GAAATGCTAGCCGTTGCCCC+GGG | - | chr4_2:20056728-20056747 | None:intergenic | 60.0% | |
| GGAAATGCTAGCCGTTGCCC+CGG | - | chr4_2:20056729-20056748 | None:intergenic | 60.0% | |
| AGTGTCCGGGGTTCGAACCC+CGG | + | chr4_2:20056451-20056470 | Msa0593710:intron | 65.0% | |
| GCTAACCGGTGTTCGGGCAC+TGG | + | chr4_2:20056575-20056594 | Msa0593710:intron | 65.0% | |
| TAACCAGTGCCCCGGGGCAA+CGG | + | chr4_2:20056715-20056734 | Msa0593710:intron | 65.0% | |
| AGGGGCCGGGGTTCGAACCC+CGG | - | chr4_2:20056459-20056478 | None:intergenic | 75.0% | |
| TAGCCGTTGCCCCGGGGCAC+TGG | - | chr4_2:20056721-20056740 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 20054163 | 20057947 | 20054163 | ID=Msa0593710;Name=Msa0593710 |
| chr4_2 | mRNA | 20054163 | 20057947 | 20054163 | ID=Msa0593710-mRNA-1;Parent=Msa0593710;Name=Msa0593710-mRNA-1;_AED=0.10;_eAED=0.10;_QI=299|1|1|1|1|1|7|182|221 |
| chr4_2 | exon | 20054163 | 20054575 | 20054163 | ID=Msa0593710-mRNA-1:exon:5732;Parent=Msa0593710-mRNA-1 |
| chr4_2 | exon | 20054686 | 20054838 | 20054686 | ID=Msa0593710-mRNA-1:exon:5733;Parent=Msa0593710-mRNA-1 |
| chr4_2 | exon | 20055201 | 20055330 | 20055201 | ID=Msa0593710-mRNA-1:exon:5734;Parent=Msa0593710-mRNA-1 |
| chr4_2 | exon | 20056285 | 20056333 | 20056285 | ID=Msa0593710-mRNA-1:exon:5735;Parent=Msa0593710-mRNA-1 |
| chr4_2 | exon | 20057217 | 20057292 | 20057217 | ID=Msa0593710-mRNA-1:exon:5736;Parent=Msa0593710-mRNA-1 |
| chr4_2 | exon | 20057474 | 20057548 | 20057474 | ID=Msa0593710-mRNA-1:exon:5737;Parent=Msa0593710-mRNA-1 |
| chr4_2 | exon | 20057697 | 20057947 | 20057697 | ID=Msa0593710-mRNA-1:exon:5738;Parent=Msa0593710-mRNA-1 |
| chr4_2 | five_prime_UTR | 20054163 | 20054461 | 20054163 | ID=Msa0593710-mRNA-1:five_prime_utr;Parent=Msa0593710-mRNA-1 |
| chr4_2 | CDS | 20054462 | 20054575 | 20054462 | ID=Msa0593710-mRNA-1:cds;Parent=Msa0593710-mRNA-1 |
| chr4_2 | CDS | 20054686 | 20054838 | 20054686 | ID=Msa0593710-mRNA-1:cds;Parent=Msa0593710-mRNA-1 |
| chr4_2 | CDS | 20055201 | 20055330 | 20055201 | ID=Msa0593710-mRNA-1:cds;Parent=Msa0593710-mRNA-1 |
| chr4_2 | CDS | 20056285 | 20056333 | 20056285 | ID=Msa0593710-mRNA-1:cds;Parent=Msa0593710-mRNA-1 |
| chr4_2 | CDS | 20057217 | 20057292 | 20057217 | ID=Msa0593710-mRNA-1:cds;Parent=Msa0593710-mRNA-1 |
| chr4_2 | CDS | 20057474 | 20057548 | 20057474 | ID=Msa0593710-mRNA-1:cds;Parent=Msa0593710-mRNA-1 |
| chr4_2 | CDS | 20057697 | 20057765 | 20057697 | ID=Msa0593710-mRNA-1:cds;Parent=Msa0593710-mRNA-1 |
| chr4_2 | three_prime_UTR | 20057766 | 20057947 | 20057766 | ID=Msa0593710-mRNA-1:three_prime_utr;Parent=Msa0593710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
