AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1119210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1119210 MtrunA17_Chr7g0267721 93.085 188 9 2 1 185 1 187 2.13e-126 353
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1119210 AT2G35900.1 46.078 204 79 7 1 185 1 192 9.05e-53 167
Msa1119210 AT2G35900.2 41.353 133 61 5 59 185 26 147 1.62e-23 91.3
Msa1119210 AT2G35900.3 41.353 133 61 5 59 185 26 147 1.62e-23 91.3

Find 66 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAACAAAACACACAAAATT+TGG 0.191025 7_3:+68044060 Msa1119210:five_prime_UTR
ACTGAGAAACACCTTATTAA+AGG 0.248702 7_3:-68046032 None:intergenic
AAATTTGGAAGCTAAGAAAA+TGG 0.261330 7_3:+68044075 Msa1119210:exon
GTCGATGGATAAATAATATT+TGG 0.265015 7_3:+68046211 Msa1119210:three_prime_UTR
GATTCCGTATCCTTGGATTT+AGG 0.265695 7_3:-68045895 None:intergenic
TACAAGTATGCCCTTTAATA+AGG 0.310406 7_3:+68046021 Msa1119210:three_prime_UTR
CGCAACCTCTTCGGTGGTCT+CGG 0.314056 7_3:+68045733 Msa1119210:CDS
CTGAGATTTCACGACTTTCC+TGG 0.320318 7_3:-68044161 None:intergenic
TATCTTTATGCCAGTTGCTT+AGG 0.364991 7_3:+68046054 Msa1119210:three_prime_UTR
GATAACAACAACTCTTCTTC+AGG 0.370020 7_3:+68044118 Msa1119210:CDS
CTAAGAAAATGGGTTGGGTT+TGG 0.371297 7_3:+68044086 Msa1119210:exon
GGGATACCTATTGAAGATAA+TGG 0.379651 7_3:+68045856 Msa1119210:CDS
AGAGGAGGGTCTGCCACATT+TGG 0.396459 7_3:+68045637 Msa1119210:CDS
ATTTAGGATGAGTTTCTTGC+CGG 0.398851 7_3:-68045879 None:intergenic
TTTGATTGCAGCACTTCAAC+AGG 0.402118 7_3:-68045574 None:intergenic
CTGAGAAACACCTTATTAAA+GGG 0.416865 7_3:-68046031 None:intergenic
AGTTTGCAATAACATCAAAA+AGG 0.435162 7_3:-68045792 None:intergenic
ATCAGCTGATTCCGTATCCT+TGG 0.436734 7_3:-68045902 None:intergenic
GGAAGCTAAGAAAATGGGTT+GGG 0.440868 7_3:+68044081 Msa1119210:exon
AAAGGGTGGTTTCAATAACT+TGG 0.443116 7_3:-68043984 None:intergenic
GTCATGGAGCGCAACCTCTT+CGG 0.456959 7_3:+68045724 Msa1119210:CDS
TGCCGGCCATTATCTTCAAT+AGG 0.466167 7_3:-68045862 None:intergenic
CATGGAATGTTCAACTTCCC+TGG 0.467653 7_3:+68045682 Msa1119210:CDS
CATCTCTGCATCAAATATAG+AGG 0.468284 7_3:-68045818 None:intergenic
AGAAAACAAACCTAAGCAAC+TGG 0.469061 7_3:-68046064 None:intergenic
TTGAACCTGGAAAATTCATT+CGG 0.473945 7_3:+68044200 Msa1119210:CDS
TAGGTATCCCTCGCCTCATA+CGG 0.477154 7_3:-68045843 None:intergenic
TGTGTTAGATCACAAACATC+TGG 0.478025 7_3:+68045996 Msa1119210:three_prime_UTR
ATCACCAGTGAGGTACTTAG+AGG 0.483893 7_3:+68045619 Msa1119210:CDS
AATTTGGAAGCTAAGAAAAT+GGG 0.483977 7_3:+68044076 Msa1119210:exon
TGATACTGATTTCTCTGCAT+TGG 0.487086 7_3:+68045921 Msa1119210:CDS
ATGCAGAGATGCCCCGTATG+AGG 0.495867 7_3:+68045830 Msa1119210:CDS
TGTTTGTGTTCCTCCTCACT+AGG 0.498721 7_3:-68044025 None:intergenic
GTGGTTTCAATAACTTGGAC+AGG 0.508591 7_3:-68043979 None:intergenic
GAGCTTCTCAAAACTTGCGC+TGG 0.511543 7_3:+68044241 Msa1119210:CDS
TTAGCTAGTTTCTCTGTCGA+TGG 0.516081 7_3:+68046196 Msa1119210:three_prime_UTR
TCAATATCACTTCGTAGCCC+AGG 0.516666 7_3:-68045700 None:intergenic
TGGAAGCTAAGAAAATGGGT+TGG 0.519769 7_3:+68044080 Msa1119210:exon
CCTGGTGGAGCATCGTTCAT+CGG 0.520580 7_3:-68044143 None:intergenic
TGTGTTCCTCCTCACTAGGT+CGG 0.521804 7_3:-68044021 None:intergenic
CCGATGAACGATGCTCCACC+AGG 0.527517 7_3:+68044143 Msa1119210:CDS
TCATCCTAAATCCAAGGATA+CGG 0.528227 7_3:+68045891 Msa1119210:CDS
AGGTATCCCTCGCCTCATAC+GGG 0.544190 7_3:-68045842 None:intergenic
CCCTCCTCTAAGTACCTCAC+TGG 0.550025 7_3:-68045623 None:intergenic
ATGGAATGTTCAACTTCCCT+GGG 0.553660 7_3:+68045683 Msa1119210:CDS
CAGGGAAGTTGAACATTCCA+TGG 0.558704 7_3:-68045681 None:intergenic
ACGAAGTGATATTGAAGTCA+TGG 0.559482 7_3:+68045708 Msa1119210:CDS
TACCTATTGAAGATAATGGC+CGG 0.564553 7_3:+68045860 Msa1119210:CDS
AGCTGATATGGCATGTATCG+AGG 0.569124 7_3:+68046106 Msa1119210:three_prime_UTR
AGAAACTCATCCTAAATCCA+AGG 0.596218 7_3:+68045885 Msa1119210:CDS
GCTTCATAACCGACCTAGTG+AGG 0.597788 7_3:+68044012 Msa1119210:five_prime_UTR
AGATGCCCCGTATGAGGCGA+GGG 0.597898 7_3:+68045836 Msa1119210:CDS
AAAACCGAAGAAGTTGAACC+TGG 0.597931 7_3:+68044187 Msa1119210:CDS
GCTGATATGGCATGTATCGA+GGG 0.607958 7_3:+68046107 Msa1119210:three_prime_UTR
CAATATCACTTCGTAGCCCA+GGG 0.608807 7_3:-68045699 None:intergenic
ACCAGTGAGGTACTTAGAGG+AGG 0.611706 7_3:+68045622 Msa1119210:CDS
ATCTCTGCATCAAATATAGA+GGG 0.614696 7_3:-68045817 None:intergenic
ATGGAGCGCAACCTCTTCGG+TGG 0.620855 7_3:+68045727 Msa1119210:CDS
CCAGTGAGGTACTTAGAGGA+GGG 0.628488 7_3:+68045623 Msa1119210:CDS
AGATTTCACGACTTTCCTGG+TGG 0.634477 7_3:-68044158 None:intergenic
CATAACCTGTAACCAAGTGT+AGG 0.641565 7_3:-68046142 None:intergenic
AGCGACCGAGACCACCGAAG+AGG 0.648679 7_3:-68045738 None:intergenic
GCAAATAGCTCATCAGACCA+TGG 0.656602 7_3:+68045664 Msa1119210:CDS
TCATAACCGACCTAGTGAGG+AGG 0.685634 7_3:+68044015 Msa1119210:five_prime_UTR
GCTATTTGCTGAGCCAAATG+TGG 0.697929 7_3:-68045650 None:intergenic
AGAAGAAGATATCACCAGTG+AGG 0.746392 7_3:+68045609 Msa1119210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCATACTATTTTATTTATT+AGG + chr7_3:68044335-68044354 Msa1119210:intron 10.0%
!!! TATTTTATTTATTAGGTATT+AGG + chr7_3:68044342-68044361 Msa1119210:intron 10.0%
!!! TTCATACTATTTTATTTATT+AGG + chr7_3:68044335-68044354 Msa1119210:intron 10.0%
!!! TATTTTATTTATTAGGTATT+AGG + chr7_3:68044342-68044361 Msa1119210:intron 10.0%
!! AATAATAATAAAGAAGAAGA+AGG - chr7_3:68044285-68044304 None:intergenic 15.0%
!!! GGATTTTTAATCAATTTTTT+TGG + chr7_3:68044377-68044396 Msa1119210:intron 15.0%
!! ATTCAAATTAAATCGTAAAA+AGG - chr7_3:68044687-68044706 None:intergenic 15.0%
!!! ATTTAATTTGAATGATCATT+TGG + chr7_3:68044694-68044713 Msa1119210:intron 15.0%
!! TATGATACTTTATATTTGAA+TGG - chr7_3:68045131-68045150 None:intergenic 15.0%
!!! TTCAATTGATTTCAATTTTT+AGG + chr7_3:68045305-68045324 Msa1119210:intron 15.0%
!!! ATTTCAATTTTTAGGTATTA+GGG + chr7_3:68045313-68045332 Msa1119210:intron 15.0%
!!! TATTGGTTGATTATATTTTT+TGG + chr7_3:68045421-68045440 Msa1119210:intron 15.0%
!! AATAATAATAAAGAAGAAGA+AGG - chr7_3:68044285-68044304 None:intergenic 15.0%
!!! GGATTTTTAATCAATTTTTT+TGG + chr7_3:68044377-68044396 Msa1119210:intron 15.0%
!! ATTCAAATTAAATCGTAAAA+AGG - chr7_3:68044687-68044706 None:intergenic 15.0%
!!! ATTTAATTTGAATGATCATT+TGG + chr7_3:68044694-68044713 Msa1119210:intron 15.0%
!! TATGATACTTTATATTTGAA+TGG - chr7_3:68045131-68045150 None:intergenic 15.0%
!!! TTCAATTGATTTCAATTTTT+AGG + chr7_3:68045305-68045324 Msa1119210:intron 15.0%
!!! ATTTCAATTTTTAGGTATTA+GGG + chr7_3:68045313-68045332 Msa1119210:intron 15.0%
!!! TATTGGTTGATTATATTTTT+TGG + chr7_3:68045421-68045440 Msa1119210:intron 15.0%
!! AAAATAGTATGAAGCAAATT+GGG - chr7_3:68044328-68044347 None:intergenic 20.0%
!! TAAAATAGTATGAAGCAAAT+TGG - chr7_3:68044329-68044348 None:intergenic 20.0%
!! ATTTATTAGGTATTAGGATT+AGG + chr7_3:68044348-68044367 Msa1119210:intron 20.0%
!! TATAGTATAGGATGTTATAA+TGG - chr7_3:68044547-68044566 None:intergenic 20.0%
!!! GATTTCAATTTTTAGGTATT+AGG + chr7_3:68045312-68045331 Msa1119210:intron 20.0%
!! TGAATATCAAGATAATTTGA+TGG - chr7_3:68045373-68045392 None:intergenic 20.0%
!!! AAAAAGTTTTTGTGCTTTAT+TGG + chr7_3:68045404-68045423 Msa1119210:intron 20.0%
!! AAAATAGTATGAAGCAAATT+GGG - chr7_3:68044328-68044347 None:intergenic 20.0%
!! TAAAATAGTATGAAGCAAAT+TGG - chr7_3:68044329-68044348 None:intergenic 20.0%
!! ATTTATTAGGTATTAGGATT+AGG + chr7_3:68044348-68044367 Msa1119210:intron 20.0%
!! TATAGTATAGGATGTTATAA+TGG - chr7_3:68044547-68044566 None:intergenic 20.0%
!!! GATTTCAATTTTTAGGTATT+AGG + chr7_3:68045312-68045331 Msa1119210:intron 20.0%
!! TGAATATCAAGATAATTTGA+TGG - chr7_3:68045373-68045392 None:intergenic 20.0%
!!! AAAAAGTTTTTGTGCTTTAT+TGG + chr7_3:68045404-68045423 Msa1119210:intron 20.0%
! AAATTTGGAAGCTAAGAAAA+TGG + chr7_3:68044075-68044094 Msa1119210:exon 25.0%
! AATTTGGAAGCTAAGAAAAT+GGG + chr7_3:68044076-68044095 Msa1119210:exon 25.0%
! GACTTCATAAAGTATAGTAT+AGG - chr7_3:68044559-68044578 None:intergenic 25.0%
!! AAACATTGTCAATTTTGTCT+TGG - chr7_3:68044799-68044818 None:intergenic 25.0%
!!! TTTAGTGACTTGTTTTGTAT+AGG + chr7_3:68045031-68045050 Msa1119210:intron 25.0%
!!! TTAGTGACTTGTTTTGTATA+GGG + chr7_3:68045032-68045051 Msa1119210:intron 25.0%
! AAGTATCATAATATGACATG+TGG + chr7_3:68045141-68045160 Msa1119210:intron 25.0%
! ATTGAAATCAATTGCAGTAT+TGG - chr7_3:68045205-68045224 None:intergenic 25.0%
! TATCTTGATGTTGATACAAA+TGG + chr7_3:68045282-68045301 Msa1119210:intron 25.0%
!!! TTTTTGGTCATTATGTTCTT+CGG + chr7_3:68045437-68045456 Msa1119210:intron 25.0%
! TCTAATTTCATCTTTACCTT+TGG + chr7_3:68045538-68045557 Msa1119210:intron 25.0%
! AGTTTGCAATAACATCAAAA+AGG - chr7_3:68045795-68045814 None:intergenic 25.0%
! ATTAAAAACTCTAGCTGATA+TGG + chr7_3:68046094-68046113 Msa1119210:three_prime_UTR 25.0%
!! TTTTATCTTTTACCTACACT+TGG + chr7_3:68046130-68046149 Msa1119210:three_prime_UTR 25.0%
! GTCGATGGATAAATAATATT+TGG + chr7_3:68046211-68046230 Msa1119210:three_prime_UTR 25.0%
! AAATTTGGAAGCTAAGAAAA+TGG + chr7_3:68044075-68044094 Msa1119210:exon 25.0%
! AATTTGGAAGCTAAGAAAAT+GGG + chr7_3:68044076-68044095 Msa1119210:exon 25.0%
! GACTTCATAAAGTATAGTAT+AGG - chr7_3:68044559-68044578 None:intergenic 25.0%
!! AAACATTGTCAATTTTGTCT+TGG - chr7_3:68044799-68044818 None:intergenic 25.0%
!!! TTTAGTGACTTGTTTTGTAT+AGG + chr7_3:68045031-68045050 Msa1119210:intron 25.0%
!!! TTAGTGACTTGTTTTGTATA+GGG + chr7_3:68045032-68045051 Msa1119210:intron 25.0%
! AAGTATCATAATATGACATG+TGG + chr7_3:68045141-68045160 Msa1119210:intron 25.0%
! ATTGAAATCAATTGCAGTAT+TGG - chr7_3:68045205-68045224 None:intergenic 25.0%
! TATCTTGATGTTGATACAAA+TGG + chr7_3:68045282-68045301 Msa1119210:intron 25.0%
!!! TTTTTGGTCATTATGTTCTT+CGG + chr7_3:68045437-68045456 Msa1119210:intron 25.0%
! TCTAATTTCATCTTTACCTT+TGG + chr7_3:68045538-68045557 Msa1119210:intron 25.0%
! AGTTTGCAATAACATCAAAA+AGG - chr7_3:68045795-68045814 None:intergenic 25.0%
! ATTAAAAACTCTAGCTGATA+TGG + chr7_3:68046094-68046113 Msa1119210:three_prime_UTR 25.0%
!! TTTTATCTTTTACCTACACT+TGG + chr7_3:68046130-68046149 Msa1119210:three_prime_UTR 25.0%
! GTCGATGGATAAATAATATT+TGG + chr7_3:68046211-68046230 Msa1119210:three_prime_UTR 25.0%
TTATGAAGCTTAAAAAAGGG+TGG - chr7_3:68044001-68044020 None:intergenic 30.0%
CGGTTATGAAGCTTAAAAAA+GGG - chr7_3:68044004-68044023 None:intergenic 30.0%
TCGGTTATGAAGCTTAAAAA+AGG - chr7_3:68044005-68044024 None:intergenic 30.0%
CGAACAAAACACACAAAATT+TGG + chr7_3:68044060-68044079 Msa1119210:five_prime_UTR 30.0%
TTGAACCTGGAAAATTCATT+CGG + chr7_3:68044200-68044219 Msa1119210:CDS 30.0%
AGCAAATTGGGAATAGAATA+GGG - chr7_3:68044316-68044335 None:intergenic 30.0%
AAGCAAATTGGGAATAGAAT+AGG - chr7_3:68044317-68044336 None:intergenic 30.0%
!! TACAAATTTTAGCACACGTT+TGG - chr7_3:68044518-68044537 None:intergenic 30.0%
TATACTTTATGAAGTCTCTG+AGG + chr7_3:68044563-68044582 Msa1119210:intron 30.0%
AAATATGCTAAAACCACCAA+AGG + chr7_3:68044633-68044652 Msa1119210:intron 30.0%
GAATGATCATTTGGATCAAT+TGG + chr7_3:68044703-68044722 Msa1119210:intron 30.0%
TCATTTGGATCAATTGGAAA+TGG + chr7_3:68044709-68044728 Msa1119210:intron 30.0%
ACTTTACCTGAAAAGAACAT+TGG + chr7_3:68044879-68044898 Msa1119210:intron 30.0%
! ATTGTACCAATGTTCTTTTC+AGG - chr7_3:68044888-68044907 None:intergenic 30.0%
TTTCGAAAATCAGGTTTCTT+GGG - chr7_3:68045009-68045028 None:intergenic 30.0%
!! TTTGTATAGGGTTGTTTTAC+AGG + chr7_3:68045044-68045063 Msa1119210:intron 30.0%
TCAACATCAAGATACTTTGA+TGG - chr7_3:68045276-68045295 None:intergenic 30.0%
! TTTTGGTCATTATGTTCTTC+GGG + chr7_3:68045438-68045457 Msa1119210:intron 30.0%
ATCTCTGCATCAAATATAGA+GGG - chr7_3:68045820-68045839 None:intergenic 30.0%
TACAAGTATGCCCTTTAATA+AGG + chr7_3:68046021-68046040 Msa1119210:three_prime_UTR 30.0%
CTGAGAAACACCTTATTAAA+GGG - chr7_3:68046034-68046053 None:intergenic 30.0%
ACTGAGAAACACCTTATTAA+AGG - chr7_3:68046035-68046054 None:intergenic 30.0%
TTATGAAGCTTAAAAAAGGG+TGG - chr7_3:68044001-68044020 None:intergenic 30.0%
CGGTTATGAAGCTTAAAAAA+GGG - chr7_3:68044004-68044023 None:intergenic 30.0%
TCGGTTATGAAGCTTAAAAA+AGG - chr7_3:68044005-68044024 None:intergenic 30.0%
CGAACAAAACACACAAAATT+TGG + chr7_3:68044060-68044079 Msa1119210:five_prime_UTR 30.0%
TTGAACCTGGAAAATTCATT+CGG + chr7_3:68044200-68044219 Msa1119210:CDS 30.0%
AGCAAATTGGGAATAGAATA+GGG - chr7_3:68044316-68044335 None:intergenic 30.0%
AAGCAAATTGGGAATAGAAT+AGG - chr7_3:68044317-68044336 None:intergenic 30.0%
!! TACAAATTTTAGCACACGTT+TGG - chr7_3:68044518-68044537 None:intergenic 30.0%
TATACTTTATGAAGTCTCTG+AGG + chr7_3:68044563-68044582 Msa1119210:intron 30.0%
AAATATGCTAAAACCACCAA+AGG + chr7_3:68044633-68044652 Msa1119210:intron 30.0%
GAATGATCATTTGGATCAAT+TGG + chr7_3:68044703-68044722 Msa1119210:intron 30.0%
TCATTTGGATCAATTGGAAA+TGG + chr7_3:68044709-68044728 Msa1119210:intron 30.0%
ACTTTACCTGAAAAGAACAT+TGG + chr7_3:68044879-68044898 Msa1119210:intron 30.0%
! ATTGTACCAATGTTCTTTTC+AGG - chr7_3:68044888-68044907 None:intergenic 30.0%
TTTCGAAAATCAGGTTTCTT+GGG - chr7_3:68045009-68045028 None:intergenic 30.0%
!! TTTGTATAGGGTTGTTTTAC+AGG + chr7_3:68045044-68045063 Msa1119210:intron 30.0%
TCAACATCAAGATACTTTGA+TGG - chr7_3:68045276-68045295 None:intergenic 30.0%
! TTTTGGTCATTATGTTCTTC+GGG + chr7_3:68045438-68045457 Msa1119210:intron 30.0%
ATCTCTGCATCAAATATAGA+GGG - chr7_3:68045820-68045839 None:intergenic 30.0%
TACAAGTATGCCCTTTAATA+AGG + chr7_3:68046021-68046040 Msa1119210:three_prime_UTR 30.0%
CTGAGAAACACCTTATTAAA+GGG - chr7_3:68046034-68046053 None:intergenic 30.0%
ACTGAGAAACACCTTATTAA+AGG - chr7_3:68046035-68046054 None:intergenic 30.0%
AAAGGGTGGTTTCAATAACT+TGG - chr7_3:68043987-68044006 None:intergenic 35.0%
GATAACAACAACTCTTCTTC+AGG + chr7_3:68044118-68044137 Msa1119210:CDS 35.0%
! TTTTCCAGGTTCAACTTCTT+CGG - chr7_3:68044194-68044213 None:intergenic 35.0%
! CATTTCCGAATGAATTTTCC+AGG - chr7_3:68044208-68044227 None:intergenic 35.0%
AGGTATTAGGATTAGGATGA+TGG + chr7_3:68044355-68044374 Msa1119210:intron 35.0%
GGTATTAGGATTAGGATGAT+GGG + chr7_3:68044356-68044375 Msa1119210:intron 35.0%
! TGATTTTGCAAAAGCTACAC+AGG - chr7_3:68044464-68044483 None:intergenic 35.0%
! ATTTTATTCTGCCAAACCGA+TGG + chr7_3:68044487-68044506 Msa1119210:intron 35.0%
AAACCACCAAAGGTTTCATT+TGG + chr7_3:68044643-68044662 Msa1119210:intron 35.0%
AGCATTAAGGATCAGAAAGT+CGG - chr7_3:68044771-68044790 None:intergenic 35.0%
CTTTCGAAAATCAGGTTTCT+TGG - chr7_3:68045010-68045029 None:intergenic 35.0%
CACTAAAGCTTTCGAAAATC+AGG - chr7_3:68045018-68045037 None:intergenic 35.0%
TGTTCTATTTGTGTAGTGTG+TGG + chr7_3:68045168-68045187 Msa1119210:intron 35.0%
GTTCTATTTGTGTAGTGTGT+GGG + chr7_3:68045169-68045188 Msa1119210:intron 35.0%
!! AAATCAATTGCAGTATTGGC+AGG - chr7_3:68045201-68045220 None:intergenic 35.0%
GATGAAACAGGTACACAAAA+AGG - chr7_3:68045488-68045507 None:intergenic 35.0%
TTACCTTTGGACTAATTCTC+AGG + chr7_3:68045551-68045570 Msa1119210:intron 35.0%
ACGAAGTGATATTGAAGTCA+TGG + chr7_3:68045708-68045727 Msa1119210:CDS 35.0%
GCAGCTGAAGAAATGAAAAA+TGG + chr7_3:68045769-68045788 Msa1119210:CDS 35.0%
CATCTCTGCATCAAATATAG+AGG - chr7_3:68045821-68045840 None:intergenic 35.0%
GGGATACCTATTGAAGATAA+TGG + chr7_3:68045856-68045875 Msa1119210:CDS 35.0%
! TACCTATTGAAGATAATGGC+CGG + chr7_3:68045860-68045879 Msa1119210:CDS 35.0%
! ATTTAGGATGAGTTTCTTGC+CGG - chr7_3:68045882-68045901 None:intergenic 35.0%
AGAAACTCATCCTAAATCCA+AGG + chr7_3:68045885-68045904 Msa1119210:CDS 35.0%
TCATCCTAAATCCAAGGATA+CGG + chr7_3:68045891-68045910 Msa1119210:CDS 35.0%
!! TGATACTGATTTCTCTGCAT+TGG + chr7_3:68045921-68045940 Msa1119210:CDS 35.0%
TGTGTTAGATCACAAACATC+TGG + chr7_3:68045996-68046015 Msa1119210:three_prime_UTR 35.0%
TATCTTTATGCCAGTTGCTT+AGG + chr7_3:68046054-68046073 Msa1119210:three_prime_UTR 35.0%
AGAAAACAAACCTAAGCAAC+TGG - chr7_3:68046067-68046086 None:intergenic 35.0%
! TTTTACCTACACTTGGTTAC+AGG + chr7_3:68046137-68046156 Msa1119210:three_prime_UTR 35.0%
AAAGGGTGGTTTCAATAACT+TGG - chr7_3:68043987-68044006 None:intergenic 35.0%
GATAACAACAACTCTTCTTC+AGG + chr7_3:68044118-68044137 Msa1119210:CDS 35.0%
! TTTTCCAGGTTCAACTTCTT+CGG - chr7_3:68044194-68044213 None:intergenic 35.0%
! CATTTCCGAATGAATTTTCC+AGG - chr7_3:68044208-68044227 None:intergenic 35.0%
AGGTATTAGGATTAGGATGA+TGG + chr7_3:68044355-68044374 Msa1119210:intron 35.0%
GGTATTAGGATTAGGATGAT+GGG + chr7_3:68044356-68044375 Msa1119210:intron 35.0%
! TGATTTTGCAAAAGCTACAC+AGG - chr7_3:68044464-68044483 None:intergenic 35.0%
! ATTTTATTCTGCCAAACCGA+TGG + chr7_3:68044487-68044506 Msa1119210:intron 35.0%
AAACCACCAAAGGTTTCATT+TGG + chr7_3:68044643-68044662 Msa1119210:intron 35.0%
AGCATTAAGGATCAGAAAGT+CGG - chr7_3:68044771-68044790 None:intergenic 35.0%
CTTTCGAAAATCAGGTTTCT+TGG - chr7_3:68045010-68045029 None:intergenic 35.0%
CACTAAAGCTTTCGAAAATC+AGG - chr7_3:68045018-68045037 None:intergenic 35.0%
TGTTCTATTTGTGTAGTGTG+TGG + chr7_3:68045168-68045187 Msa1119210:intron 35.0%
GTTCTATTTGTGTAGTGTGT+GGG + chr7_3:68045169-68045188 Msa1119210:intron 35.0%
!! AAATCAATTGCAGTATTGGC+AGG - chr7_3:68045201-68045220 None:intergenic 35.0%
GATGAAACAGGTACACAAAA+AGG - chr7_3:68045488-68045507 None:intergenic 35.0%
TTACCTTTGGACTAATTCTC+AGG + chr7_3:68045551-68045570 Msa1119210:intron 35.0%
ACGAAGTGATATTGAAGTCA+TGG + chr7_3:68045708-68045727 Msa1119210:CDS 35.0%
GCAGCTGAAGAAATGAAAAA+TGG + chr7_3:68045769-68045788 Msa1119210:CDS 35.0%
CATCTCTGCATCAAATATAG+AGG - chr7_3:68045821-68045840 None:intergenic 35.0%
GGGATACCTATTGAAGATAA+TGG + chr7_3:68045856-68045875 Msa1119210:CDS 35.0%
! TACCTATTGAAGATAATGGC+CGG + chr7_3:68045860-68045879 Msa1119210:CDS 35.0%
! ATTTAGGATGAGTTTCTTGC+CGG - chr7_3:68045882-68045901 None:intergenic 35.0%
AGAAACTCATCCTAAATCCA+AGG + chr7_3:68045885-68045904 Msa1119210:CDS 35.0%
TCATCCTAAATCCAAGGATA+CGG + chr7_3:68045891-68045910 Msa1119210:CDS 35.0%
!! TGATACTGATTTCTCTGCAT+TGG + chr7_3:68045921-68045940 Msa1119210:CDS 35.0%
TGTGTTAGATCACAAACATC+TGG + chr7_3:68045996-68046015 Msa1119210:three_prime_UTR 35.0%
TATCTTTATGCCAGTTGCTT+AGG + chr7_3:68046054-68046073 Msa1119210:three_prime_UTR 35.0%
AGAAAACAAACCTAAGCAAC+TGG - chr7_3:68046067-68046086 None:intergenic 35.0%
! TTTTACCTACACTTGGTTAC+AGG + chr7_3:68046137-68046156 Msa1119210:three_prime_UTR 35.0%
GTGGTTTCAATAACTTGGAC+AGG - chr7_3:68043982-68044001 None:intergenic 40.0%
TGGAAGCTAAGAAAATGGGT+TGG + chr7_3:68044080-68044099 Msa1119210:exon 40.0%
! GGAAGCTAAGAAAATGGGTT+GGG + chr7_3:68044081-68044100 Msa1119210:exon 40.0%
!! CTAAGAAAATGGGTTGGGTT+TGG + chr7_3:68044086-68044105 Msa1119210:exon 40.0%
AAAACCGAAGAAGTTGAACC+TGG + chr7_3:68044187-68044206 Msa1119210:CDS 40.0%
ATCGCTCCAAATGAAACCTT+TGG - chr7_3:68044652-68044671 None:intergenic 40.0%
! TGTCTTGGCATAGAGCATTA+AGG - chr7_3:68044784-68044803 None:intergenic 40.0%
!! GGTTGTTTTACAGGCTTTGA+AGG + chr7_3:68045053-68045072 Msa1119210:intron 40.0%
TAGGTATTAGGGTTATGCAC+AGG + chr7_3:68045324-68045343 Msa1119210:intron 40.0%
TTTGATTGCAGCACTTCAAC+AGG - chr7_3:68045577-68045596 None:intergenic 40.0%
AGAAGAAGATATCACCAGTG+AGG + chr7_3:68045609-68045628 Msa1119210:CDS 40.0%
ATGGAATGTTCAACTTCCCT+GGG + chr7_3:68045683-68045702 Msa1119210:CDS 40.0%
GATTCCGTATCCTTGGATTT+AGG - chr7_3:68045898-68045917 None:intergenic 40.0%
CATAACCTGTAACCAAGTGT+AGG - chr7_3:68046145-68046164 None:intergenic 40.0%
! TTAGCTAGTTTCTCTGTCGA+TGG + chr7_3:68046196-68046215 Msa1119210:three_prime_UTR 40.0%
GTGGTTTCAATAACTTGGAC+AGG - chr7_3:68043982-68044001 None:intergenic 40.0%
TGGAAGCTAAGAAAATGGGT+TGG + chr7_3:68044080-68044099 Msa1119210:exon 40.0%
! GGAAGCTAAGAAAATGGGTT+GGG + chr7_3:68044081-68044100 Msa1119210:exon 40.0%
!! CTAAGAAAATGGGTTGGGTT+TGG + chr7_3:68044086-68044105 Msa1119210:exon 40.0%
AAAACCGAAGAAGTTGAACC+TGG + chr7_3:68044187-68044206 Msa1119210:CDS 40.0%
ATCGCTCCAAATGAAACCTT+TGG - chr7_3:68044652-68044671 None:intergenic 40.0%
! TGTCTTGGCATAGAGCATTA+AGG - chr7_3:68044784-68044803 None:intergenic 40.0%
!! GGTTGTTTTACAGGCTTTGA+AGG + chr7_3:68045053-68045072 Msa1119210:intron 40.0%
TAGGTATTAGGGTTATGCAC+AGG + chr7_3:68045324-68045343 Msa1119210:intron 40.0%
TTTGATTGCAGCACTTCAAC+AGG - chr7_3:68045577-68045596 None:intergenic 40.0%
AGAAGAAGATATCACCAGTG+AGG + chr7_3:68045609-68045628 Msa1119210:CDS 40.0%
ATGGAATGTTCAACTTCCCT+GGG + chr7_3:68045683-68045702 Msa1119210:CDS 40.0%
GATTCCGTATCCTTGGATTT+AGG - chr7_3:68045898-68045917 None:intergenic 40.0%
CATAACCTGTAACCAAGTGT+AGG - chr7_3:68046145-68046164 None:intergenic 40.0%
! TTAGCTAGTTTCTCTGTCGA+TGG + chr7_3:68046196-68046215 Msa1119210:three_prime_UTR 40.0%
TGTTTGTGTTCCTCCTCACT+AGG - chr7_3:68044028-68044047 None:intergenic 45.0%
AGATTTCACGACTTTCCTGG+TGG - chr7_3:68044161-68044180 None:intergenic 45.0%
CTGAGATTTCACGACTTTCC+TGG - chr7_3:68044164-68044183 None:intergenic 45.0%
!! GTTTGGATTAGCCATCGGTT+TGG - chr7_3:68044501-68044520 None:intergenic 45.0%
!! CACACGTTTGGATTAGCCAT+CGG - chr7_3:68044506-68044525 None:intergenic 45.0%
GCTCCAAATGAAACCTTTGG+TGG - chr7_3:68044649-68044668 None:intergenic 45.0%
! GTTGTCGTTTGCATCATAGC+AGG + chr7_3:68044908-68044927 Msa1119210:intron 45.0%
GCATCATAGCAGGAAGAGAA+TGG + chr7_3:68044918-68044937 Msa1119210:intron 45.0%
CATGTACATGCACAAGTGAC+AGG - chr7_3:68044946-68044965 None:intergenic 45.0%
CACTTGTGCATGTACATGTG+TGG + chr7_3:68044948-68044967 Msa1119210:intron 45.0%
!! GCACAAGTAGCACCACTTTT+TGG + chr7_3:68045243-68045262 Msa1119210:intron 45.0%
! GATGGAGCACTTCCAAAAAG+TGG - chr7_3:68045258-68045277 None:intergenic 45.0%
TTCAGTCGCATTTGCAGAGA+GGG - chr7_3:68045516-68045535 None:intergenic 45.0%
TTTCAGTCGCATTTGCAGAG+AGG - chr7_3:68045517-68045536 None:intergenic 45.0%
AGGCCTGAGAATTAGTCCAA+AGG - chr7_3:68045557-68045576 None:intergenic 45.0%
! ATCACCAGTGAGGTACTTAG+AGG + chr7_3:68045619-68045638 Msa1119210:CDS 45.0%
! GCTATTTGCTGAGCCAAATG+TGG - chr7_3:68045653-68045672 None:intergenic 45.0%
GCAAATAGCTCATCAGACCA+TGG + chr7_3:68045664-68045683 Msa1119210:CDS 45.0%
CAGGGAAGTTGAACATTCCA+TGG - chr7_3:68045684-68045703 None:intergenic 45.0%
CATGGAATGTTCAACTTCCC+TGG + chr7_3:68045682-68045701 Msa1119210:CDS 45.0%
CAATATCACTTCGTAGCCCA+GGG - chr7_3:68045702-68045721 None:intergenic 45.0%
TCAATATCACTTCGTAGCCC+AGG - chr7_3:68045703-68045722 None:intergenic 45.0%
TGCCGGCCATTATCTTCAAT+AGG - chr7_3:68045865-68045884 None:intergenic 45.0%
! ATCAGCTGATTCCGTATCCT+TGG - chr7_3:68045905-68045924 None:intergenic 45.0%
AGCTGATATGGCATGTATCG+AGG + chr7_3:68046106-68046125 Msa1119210:three_prime_UTR 45.0%
GCTGATATGGCATGTATCGA+GGG + chr7_3:68046107-68046126 Msa1119210:three_prime_UTR 45.0%
TGTTTGTGTTCCTCCTCACT+AGG - chr7_3:68044028-68044047 None:intergenic 45.0%
AGATTTCACGACTTTCCTGG+TGG - chr7_3:68044161-68044180 None:intergenic 45.0%
CTGAGATTTCACGACTTTCC+TGG - chr7_3:68044164-68044183 None:intergenic 45.0%
!! GTTTGGATTAGCCATCGGTT+TGG - chr7_3:68044501-68044520 None:intergenic 45.0%
!! CACACGTTTGGATTAGCCAT+CGG - chr7_3:68044506-68044525 None:intergenic 45.0%
GCTCCAAATGAAACCTTTGG+TGG - chr7_3:68044649-68044668 None:intergenic 45.0%
! GTTGTCGTTTGCATCATAGC+AGG + chr7_3:68044908-68044927 Msa1119210:intron 45.0%
GCATCATAGCAGGAAGAGAA+TGG + chr7_3:68044918-68044937 Msa1119210:intron 45.0%
CATGTACATGCACAAGTGAC+AGG - chr7_3:68044946-68044965 None:intergenic 45.0%
CACTTGTGCATGTACATGTG+TGG + chr7_3:68044948-68044967 Msa1119210:intron 45.0%
!! GCACAAGTAGCACCACTTTT+TGG + chr7_3:68045243-68045262 Msa1119210:intron 45.0%
! GATGGAGCACTTCCAAAAAG+TGG - chr7_3:68045258-68045277 None:intergenic 45.0%
TTCAGTCGCATTTGCAGAGA+GGG - chr7_3:68045516-68045535 None:intergenic 45.0%
TTTCAGTCGCATTTGCAGAG+AGG - chr7_3:68045517-68045536 None:intergenic 45.0%
AGGCCTGAGAATTAGTCCAA+AGG - chr7_3:68045557-68045576 None:intergenic 45.0%
! ATCACCAGTGAGGTACTTAG+AGG + chr7_3:68045619-68045638 Msa1119210:CDS 45.0%
! GCTATTTGCTGAGCCAAATG+TGG - chr7_3:68045653-68045672 None:intergenic 45.0%
GCAAATAGCTCATCAGACCA+TGG + chr7_3:68045664-68045683 Msa1119210:CDS 45.0%
CAGGGAAGTTGAACATTCCA+TGG - chr7_3:68045684-68045703 None:intergenic 45.0%
CATGGAATGTTCAACTTCCC+TGG + chr7_3:68045682-68045701 Msa1119210:CDS 45.0%
CAATATCACTTCGTAGCCCA+GGG - chr7_3:68045702-68045721 None:intergenic 45.0%
TCAATATCACTTCGTAGCCC+AGG - chr7_3:68045703-68045722 None:intergenic 45.0%
TGCCGGCCATTATCTTCAAT+AGG - chr7_3:68045865-68045884 None:intergenic 45.0%
! ATCAGCTGATTCCGTATCCT+TGG - chr7_3:68045905-68045924 None:intergenic 45.0%
AGCTGATATGGCATGTATCG+AGG + chr7_3:68046106-68046125 Msa1119210:three_prime_UTR 45.0%
GCTGATATGGCATGTATCGA+GGG + chr7_3:68046107-68046126 Msa1119210:three_prime_UTR 45.0%
GCTTCATAACCGACCTAGTG+AGG + chr7_3:68044012-68044031 Msa1119210:five_prime_UTR 50.0%
TCATAACCGACCTAGTGAGG+AGG + chr7_3:68044015-68044034 Msa1119210:five_prime_UTR 50.0%
TGTGTTCCTCCTCACTAGGT+CGG - chr7_3:68044024-68044043 None:intergenic 50.0%
GAGCTTCTCAAAACTTGCGC+TGG + chr7_3:68044241-68044260 Msa1119210:CDS 50.0%
! AGTGAGTGTCGCTGCATGTT+GGG - chr7_3:68045093-68045112 None:intergenic 50.0%
! ACCAGTGAGGTACTTAGAGG+AGG + chr7_3:68045622-68045641 Msa1119210:CDS 50.0%
! CCAGTGAGGTACTTAGAGGA+GGG + chr7_3:68045623-68045642 Msa1119210:CDS 50.0%
TAGGTATCCCTCGCCTCATA+CGG - chr7_3:68045846-68045865 None:intergenic 50.0%
GCTTCATAACCGACCTAGTG+AGG + chr7_3:68044012-68044031 Msa1119210:five_prime_UTR 50.0%
TCATAACCGACCTAGTGAGG+AGG + chr7_3:68044015-68044034 Msa1119210:five_prime_UTR 50.0%
TGTGTTCCTCCTCACTAGGT+CGG - chr7_3:68044024-68044043 None:intergenic 50.0%
GAGCTTCTCAAAACTTGCGC+TGG + chr7_3:68044241-68044260 Msa1119210:CDS 50.0%
! AGTGAGTGTCGCTGCATGTT+GGG - chr7_3:68045093-68045112 None:intergenic 50.0%
! ACCAGTGAGGTACTTAGAGG+AGG + chr7_3:68045622-68045641 Msa1119210:CDS 50.0%
! CCAGTGAGGTACTTAGAGGA+GGG + chr7_3:68045623-68045642 Msa1119210:CDS 50.0%
TAGGTATCCCTCGCCTCATA+CGG - chr7_3:68045846-68045865 None:intergenic 50.0%
!! CCTGGTGGAGCATCGTTCAT+CGG - chr7_3:68044146-68044165 None:intergenic 55.0%
! CAGTGAGTGTCGCTGCATGT+TGG - chr7_3:68045094-68045113 None:intergenic 55.0%
GAGAGGGTGGGTGATGAAAC+AGG - chr7_3:68045500-68045519 None:intergenic 55.0%
GTCGCATTTGCAGAGAGGGT+GGG - chr7_3:68045512-68045531 None:intergenic 55.0%
AGTCGCATTTGCAGAGAGGG+TGG - chr7_3:68045513-68045532 None:intergenic 55.0%
CCCTCCTCTAAGTACCTCAC+TGG - chr7_3:68045626-68045645 None:intergenic 55.0%
AGAGGAGGGTCTGCCACATT+TGG + chr7_3:68045637-68045656 Msa1119210:CDS 55.0%
GTCATGGAGCGCAACCTCTT+CGG + chr7_3:68045724-68045743 Msa1119210:CDS 55.0%
ATGCAGAGATGCCCCGTATG+AGG + chr7_3:68045830-68045849 Msa1119210:CDS 55.0%
AGGTATCCCTCGCCTCATAC+GGG - chr7_3:68045845-68045864 None:intergenic 55.0%
!! CCTGGTGGAGCATCGTTCAT+CGG - chr7_3:68044146-68044165 None:intergenic 55.0%
! CAGTGAGTGTCGCTGCATGT+TGG - chr7_3:68045094-68045113 None:intergenic 55.0%
GAGAGGGTGGGTGATGAAAC+AGG - chr7_3:68045500-68045519 None:intergenic 55.0%
GTCGCATTTGCAGAGAGGGT+GGG - chr7_3:68045512-68045531 None:intergenic 55.0%
AGTCGCATTTGCAGAGAGGG+TGG - chr7_3:68045513-68045532 None:intergenic 55.0%
CCCTCCTCTAAGTACCTCAC+TGG - chr7_3:68045626-68045645 None:intergenic 55.0%
AGAGGAGGGTCTGCCACATT+TGG + chr7_3:68045637-68045656 Msa1119210:CDS 55.0%
GTCATGGAGCGCAACCTCTT+CGG + chr7_3:68045724-68045743 Msa1119210:CDS 55.0%
ATGCAGAGATGCCCCGTATG+AGG + chr7_3:68045830-68045849 Msa1119210:CDS 55.0%
AGGTATCCCTCGCCTCATAC+GGG - chr7_3:68045845-68045864 None:intergenic 55.0%
CCGATGAACGATGCTCCACC+AGG + chr7_3:68044143-68044162 Msa1119210:CDS 60.0%
ATGGAGCGCAACCTCTTCGG+TGG + chr7_3:68045727-68045746 Msa1119210:CDS 60.0%
CGCAACCTCTTCGGTGGTCT+CGG + chr7_3:68045733-68045752 Msa1119210:CDS 60.0%
AGATGCCCCGTATGAGGCGA+GGG + chr7_3:68045836-68045855 Msa1119210:CDS 60.0%
GGTATCCCTCGCCTCATACG+GGG - chr7_3:68045844-68045863 None:intergenic 60.0%
CCGATGAACGATGCTCCACC+AGG + chr7_3:68044143-68044162 Msa1119210:CDS 60.0%
ATGGAGCGCAACCTCTTCGG+TGG + chr7_3:68045727-68045746 Msa1119210:CDS 60.0%
CGCAACCTCTTCGGTGGTCT+CGG + chr7_3:68045733-68045752 Msa1119210:CDS 60.0%
AGATGCCCCGTATGAGGCGA+GGG + chr7_3:68045836-68045855 Msa1119210:CDS 60.0%
GGTATCCCTCGCCTCATACG+GGG - chr7_3:68045844-68045863 None:intergenic 60.0%
AGCGACCGAGACCACCGAAG+AGG - chr7_3:68045741-68045760 None:intergenic 65.0%
GAGATGCCCCGTATGAGGCG+AGG + chr7_3:68045835-68045854 Msa1119210:CDS 65.0%
AGCGACCGAGACCACCGAAG+AGG - chr7_3:68045741-68045760 None:intergenic 65.0%
GAGATGCCCCGTATGAGGCG+AGG + chr7_3:68045835-68045854 Msa1119210:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 68043952 68046234 68043952 ID=Msa1119210;Name=Msa1119210
chr7_3 mRNA 68043952 68046234 68043952 ID=Msa1119210-mRNA-1;Parent=Msa1119210;Name=Msa1119210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=142|1|1|1|1|1|2|277|185
chr7_3 exon 68043952 68044266 68043952 ID=Msa1119210-mRNA-1:exon:16883;Parent=Msa1119210-mRNA-1
chr7_3 exon 68045573 68046234 68045573 ID=Msa1119210-mRNA-1:exon:16884;Parent=Msa1119210-mRNA-1
chr7_3 five_prime_UTR 68043952 68044093 68043952 ID=Msa1119210-mRNA-1:five_prime_utr;Parent=Msa1119210-mRNA-1
chr7_3 CDS 68044094 68044266 68044094 ID=Msa1119210-mRNA-1:cds;Parent=Msa1119210-mRNA-1
chr7_3 CDS 68045573 68045957 68045573 ID=Msa1119210-mRNA-1:cds;Parent=Msa1119210-mRNA-1
chr7_3 three_prime_UTR 68045958 68046234 68045958 ID=Msa1119210-mRNA-1:three_prime_utr;Parent=Msa1119210-mRNA-1
Gene Sequence

>Msa1119210

ATGGGTTGGGTTTGGAGCGACGACGATAACAACAACTCTTCTTCAGGTTCCGATGAACGATGCTCCACCAGGAAAGTCGTGAAATCTCAGTGCAAAACCGAAGAAGTTGAACCTGGAAAATTCATTCGGAAATGCGAGAAAACTGAAGAGCTTCTCAAAACTTGCGCTGGAAAGCCTGTTGAAGTGCTGCAATCAAACAAAGAGTACACAGAAGAAGATATCACCAGTGAGGTACTTAGAGGAGGGTCTGCCACATTTGGCTCAGCAAATAGCTCATCAGACCATGGAATGTTCAACTTCCCTGGGCTACGAAGTGATATTGAAGTCATGGAGCGCAACCTCTTCGGTGGTCTCGGTCGCTTCTTTGAAGCAGCTGAAGAAATGAAAAATGGCCTTTTTGATGTTATTGCAAACTCTCCCTCTATATTTGATGCAGAGATGCCCCGTATGAGGCGAGGGATACCTATTGAAGATAATGGCCGGCAAGAAACTCATCCTAAATCCAAGGATACGGAATCAGCTGATACTGATTTCTCTGCATTGGCTAAAGATGTTTAA
Protein sequence

>Msa1119210

MGWVWSDDDNNNSSSGSDERCSTRKVVKSQCKTEEVEPGKFIRKCEKTEELLKTCAGKPVEVLQSNKEYTEEDITSEVLRGGSATFGSANSSSDHGMFNFPGLRSDIEVMERNLFGGLGRFFEAAEEMKNGLFDVIANSPSIFDAEMPRMRRGIPIEDNGRQETHPKSKDTESADTDFSALAKDV*