AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1119110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1119110 MtrunA17_Chr7g0267721 93.085 188 9 2 1 185 1 187 2.13e-126 353
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1119110 AT2G35900.1 46.078 204 79 7 1 185 1 192 9.05e-53 167
Msa1119110 AT2G35900.2 41.353 133 61 5 59 185 26 147 1.62e-23 91.3
Msa1119110 AT2G35900.3 41.353 133 61 5 59 185 26 147 1.62e-23 91.3

Find 66 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAACAAAACACACAAAATT+TGG 0.191025 7_3:+67952311 Msa1119110:five_prime_UTR
ACTGAGAAACACCTTATTAA+AGG 0.248702 7_3:-67954282 None:intergenic
AAATTTGGAAGCTAAGAAAA+TGG 0.261330 7_3:+67952326 Msa1119110:exon
GTCGATGGATAAATAATATT+TGG 0.265015 7_3:+67954461 Msa1119110:three_prime_UTR
GATTCCGTATCCTTGGATTT+AGG 0.265695 7_3:-67954145 None:intergenic
TACAAGTATGCCCTTTAATA+AGG 0.310406 7_3:+67954271 Msa1119110:three_prime_UTR
CGCAACCTCTTCGGTGGTCT+CGG 0.314056 7_3:+67953983 Msa1119110:CDS
CTGAGATTTCACGACTTTCC+TGG 0.320318 7_3:-67952412 None:intergenic
TATCTTTATGCCAGTTGCTT+AGG 0.364991 7_3:+67954304 Msa1119110:three_prime_UTR
GATAACAACAACTCTTCTTC+AGG 0.370020 7_3:+67952369 Msa1119110:CDS
CTAAGAAAATGGGTTGGGTT+TGG 0.371297 7_3:+67952337 Msa1119110:exon
GGGATACCTATTGAAGATAA+TGG 0.379651 7_3:+67954106 Msa1119110:CDS
AGAGGAGGGTCTGCCACATT+TGG 0.396459 7_3:+67953887 Msa1119110:CDS
ATTTAGGATGAGTTTCTTGC+CGG 0.398851 7_3:-67954129 None:intergenic
TTTGATTGCAGCACTTCAAC+AGG 0.402118 7_3:-67953824 None:intergenic
CTGAGAAACACCTTATTAAA+GGG 0.416865 7_3:-67954281 None:intergenic
AGTTTGCAATAACATCAAAA+AGG 0.435162 7_3:-67954042 None:intergenic
ATCAGCTGATTCCGTATCCT+TGG 0.436734 7_3:-67954152 None:intergenic
GGAAGCTAAGAAAATGGGTT+GGG 0.440868 7_3:+67952332 Msa1119110:exon
AAAGGGTGGTTTCAATAACT+TGG 0.443116 7_3:-67952235 None:intergenic
GTCATGGAGCGCAACCTCTT+CGG 0.456959 7_3:+67953974 Msa1119110:CDS
TGCCGGCCATTATCTTCAAT+AGG 0.466167 7_3:-67954112 None:intergenic
CATGGAATGTTCAACTTCCC+TGG 0.467653 7_3:+67953932 Msa1119110:CDS
CATCTCTGCATCAAATATAG+AGG 0.468284 7_3:-67954068 None:intergenic
AGAAAACAAACCTAAGCAAC+TGG 0.469061 7_3:-67954314 None:intergenic
TTGAACCTGGAAAATTCATT+CGG 0.473945 7_3:+67952451 Msa1119110:CDS
TAGGTATCCCTCGCCTCATA+CGG 0.477154 7_3:-67954093 None:intergenic
TGTGTTAGATCACAAACATC+TGG 0.478025 7_3:+67954246 Msa1119110:three_prime_UTR
ATCACCAGTGAGGTACTTAG+AGG 0.483893 7_3:+67953869 Msa1119110:CDS
AATTTGGAAGCTAAGAAAAT+GGG 0.483977 7_3:+67952327 Msa1119110:exon
TGATACTGATTTCTCTGCAT+TGG 0.487086 7_3:+67954171 Msa1119110:CDS
ATGCAGAGATGCCCCGTATG+AGG 0.495867 7_3:+67954080 Msa1119110:CDS
TGTTTGTGTTCCTCCTCACT+AGG 0.498721 7_3:-67952276 None:intergenic
GTGGTTTCAATAACTTGGAC+AGG 0.508591 7_3:-67952230 None:intergenic
GAGCTTCTCAAAACTTGCGC+TGG 0.511543 7_3:+67952492 Msa1119110:CDS
TTAGCTAGTTTCTCTGTCGA+TGG 0.516081 7_3:+67954446 Msa1119110:three_prime_UTR
TCAATATCACTTCGTAGCCC+AGG 0.516666 7_3:-67953950 None:intergenic
TGGAAGCTAAGAAAATGGGT+TGG 0.519769 7_3:+67952331 Msa1119110:exon
CCTGGTGGAGCATCGTTCAT+CGG 0.520580 7_3:-67952394 None:intergenic
TGTGTTCCTCCTCACTAGGT+CGG 0.521804 7_3:-67952272 None:intergenic
CCGATGAACGATGCTCCACC+AGG 0.527517 7_3:+67952394 Msa1119110:CDS
TCATCCTAAATCCAAGGATA+CGG 0.528227 7_3:+67954141 Msa1119110:CDS
AGGTATCCCTCGCCTCATAC+GGG 0.544190 7_3:-67954092 None:intergenic
CCCTCCTCTAAGTACCTCAC+TGG 0.550025 7_3:-67953873 None:intergenic
ATGGAATGTTCAACTTCCCT+GGG 0.553660 7_3:+67953933 Msa1119110:CDS
CAGGGAAGTTGAACATTCCA+TGG 0.558704 7_3:-67953931 None:intergenic
ACGAAGTGATATTGAAGTCA+TGG 0.559482 7_3:+67953958 Msa1119110:CDS
TACCTATTGAAGATAATGGC+CGG 0.564553 7_3:+67954110 Msa1119110:CDS
AGCTGATATGGCATGTATCG+AGG 0.569124 7_3:+67954356 Msa1119110:three_prime_UTR
AGAAACTCATCCTAAATCCA+AGG 0.596218 7_3:+67954135 Msa1119110:CDS
GCTTCATAACCGACCTAGTG+AGG 0.597788 7_3:+67952263 Msa1119110:five_prime_UTR
AGATGCCCCGTATGAGGCGA+GGG 0.597898 7_3:+67954086 Msa1119110:CDS
AAAACCGAAGAAGTTGAACC+TGG 0.597931 7_3:+67952438 Msa1119110:CDS
GCTGATATGGCATGTATCGA+GGG 0.607958 7_3:+67954357 Msa1119110:three_prime_UTR
CAATATCACTTCGTAGCCCA+GGG 0.608807 7_3:-67953949 None:intergenic
ACCAGTGAGGTACTTAGAGG+AGG 0.611706 7_3:+67953872 Msa1119110:CDS
ATCTCTGCATCAAATATAGA+GGG 0.614696 7_3:-67954067 None:intergenic
ATGGAGCGCAACCTCTTCGG+TGG 0.620855 7_3:+67953977 Msa1119110:CDS
CCAGTGAGGTACTTAGAGGA+GGG 0.628488 7_3:+67953873 Msa1119110:CDS
AGATTTCACGACTTTCCTGG+TGG 0.634477 7_3:-67952409 None:intergenic
CATAACCTGTAACCAAGTGT+AGG 0.641565 7_3:-67954392 None:intergenic
AGCGACCGAGACCACCGAAG+AGG 0.648679 7_3:-67953988 None:intergenic
GCAAATAGCTCATCAGACCA+TGG 0.656602 7_3:+67953914 Msa1119110:CDS
TCATAACCGACCTAGTGAGG+AGG 0.685634 7_3:+67952266 Msa1119110:five_prime_UTR
GCTATTTGCTGAGCCAAATG+TGG 0.697929 7_3:-67953900 None:intergenic
AGAAGAAGATATCACCAGTG+AGG 0.746392 7_3:+67953859 Msa1119110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCATACTATTTTATTTATT+AGG + chr7_3:67952586-67952605 Msa1119110:intron 10.0%
!!! TATTTTATTTATTAGGTATT+AGG + chr7_3:67952593-67952612 Msa1119110:intron 10.0%
!!! TTCATACTATTTTATTTATT+AGG + chr7_3:67952586-67952605 Msa1119110:intron 10.0%
!!! TATTTTATTTATTAGGTATT+AGG + chr7_3:67952593-67952612 Msa1119110:intron 10.0%
!! ATTCAAATTAAATCGTAAAA+AGG - chr7_3:67952937-67952956 None:intergenic 15.0%
!!! ATTTAATTTGAATGATCATT+TGG + chr7_3:67952944-67952963 Msa1119110:intron 15.0%
!! TATGATACTTTATATTTGAA+TGG - chr7_3:67953381-67953400 None:intergenic 15.0%
!!! TTCAATTGATTTCAATTTTT+AGG + chr7_3:67953555-67953574 Msa1119110:intron 15.0%
!!! ATTTCAATTTTTAGGTATTA+GGG + chr7_3:67953563-67953582 Msa1119110:intron 15.0%
!!! TATTGGTTGATTATATTTTT+TGG + chr7_3:67953671-67953690 Msa1119110:intron 15.0%
!! ATTCAAATTAAATCGTAAAA+AGG - chr7_3:67952937-67952956 None:intergenic 15.0%
!!! ATTTAATTTGAATGATCATT+TGG + chr7_3:67952944-67952963 Msa1119110:intron 15.0%
!! TATGATACTTTATATTTGAA+TGG - chr7_3:67953381-67953400 None:intergenic 15.0%
!!! TTCAATTGATTTCAATTTTT+AGG + chr7_3:67953555-67953574 Msa1119110:intron 15.0%
!!! ATTTCAATTTTTAGGTATTA+GGG + chr7_3:67953563-67953582 Msa1119110:intron 15.0%
!!! TATTGGTTGATTATATTTTT+TGG + chr7_3:67953671-67953690 Msa1119110:intron 15.0%
!! AATAATAAAGAAGAAGAAGA+AGG - chr7_3:67952536-67952555 None:intergenic 20.0%
!! AAAATAGTATGAAGCAAATT+GGG - chr7_3:67952579-67952598 None:intergenic 20.0%
!! TAAAATAGTATGAAGCAAAT+TGG - chr7_3:67952580-67952599 None:intergenic 20.0%
!! ATTTATTAGGTATTAGGATT+AGG + chr7_3:67952599-67952618 Msa1119110:intron 20.0%
!!! GGGATTTTTAATCAATTTTT+TGG + chr7_3:67952627-67952646 Msa1119110:intron 20.0%
!! TATAGTATAGGATGTTATAA+TGG - chr7_3:67952797-67952816 None:intergenic 20.0%
!!! GATTTCAATTTTTAGGTATT+AGG + chr7_3:67953562-67953581 Msa1119110:intron 20.0%
!! TGAATATCAAGATAATTTGA+TGG - chr7_3:67953623-67953642 None:intergenic 20.0%
!!! AAAAAGTTTTTGTGCTTTAT+TGG + chr7_3:67953654-67953673 Msa1119110:intron 20.0%
!! AATAATAAAGAAGAAGAAGA+AGG - chr7_3:67952536-67952555 None:intergenic 20.0%
!! AAAATAGTATGAAGCAAATT+GGG - chr7_3:67952579-67952598 None:intergenic 20.0%
!! TAAAATAGTATGAAGCAAAT+TGG - chr7_3:67952580-67952599 None:intergenic 20.0%
!! ATTTATTAGGTATTAGGATT+AGG + chr7_3:67952599-67952618 Msa1119110:intron 20.0%
!!! GGGATTTTTAATCAATTTTT+TGG + chr7_3:67952627-67952646 Msa1119110:intron 20.0%
!! TATAGTATAGGATGTTATAA+TGG - chr7_3:67952797-67952816 None:intergenic 20.0%
!!! GATTTCAATTTTTAGGTATT+AGG + chr7_3:67953562-67953581 Msa1119110:intron 20.0%
!! TGAATATCAAGATAATTTGA+TGG - chr7_3:67953623-67953642 None:intergenic 20.0%
!!! AAAAAGTTTTTGTGCTTTAT+TGG + chr7_3:67953654-67953673 Msa1119110:intron 20.0%
! AAATTTGGAAGCTAAGAAAA+TGG + chr7_3:67952326-67952345 Msa1119110:exon 25.0%
! AATTTGGAAGCTAAGAAAAT+GGG + chr7_3:67952327-67952346 Msa1119110:exon 25.0%
! GACTTCATAAAGTATAGTAT+AGG - chr7_3:67952809-67952828 None:intergenic 25.0%
! TATACTTTATGAAGTCTCTA+AGG + chr7_3:67952813-67952832 Msa1119110:intron 25.0%
!! AAACATTGTCAATTTTGTCT+TGG - chr7_3:67953049-67953068 None:intergenic 25.0%
!!! TTTAGTGACTTGTTTTGTAT+AGG + chr7_3:67953281-67953300 Msa1119110:intron 25.0%
!!! TTAGTGACTTGTTTTGTATA+GGG + chr7_3:67953282-67953301 Msa1119110:intron 25.0%
! AAGTATCATAATATGACATG+TGG + chr7_3:67953391-67953410 Msa1119110:intron 25.0%
! ATTGAAATCAATTGCAGTAT+TGG - chr7_3:67953455-67953474 None:intergenic 25.0%
! TATCTTGATGTTGATACAAA+TGG + chr7_3:67953532-67953551 Msa1119110:intron 25.0%
!!! TTTTTGGTCATTATGTTCTT+CGG + chr7_3:67953687-67953706 Msa1119110:intron 25.0%
! TCTAATTTCATCTTTACCTT+TGG + chr7_3:67953788-67953807 Msa1119110:intron 25.0%
! AGTTTGCAATAACATCAAAA+AGG - chr7_3:67954045-67954064 None:intergenic 25.0%
! ATTAAAAACTCTAGCTGATA+TGG + chr7_3:67954344-67954363 Msa1119110:three_prime_UTR 25.0%
!! TTTTATCTTTTACCTACACT+TGG + chr7_3:67954380-67954399 Msa1119110:three_prime_UTR 25.0%
! GTCGATGGATAAATAATATT+TGG + chr7_3:67954461-67954480 Msa1119110:three_prime_UTR 25.0%
! AAATTTGGAAGCTAAGAAAA+TGG + chr7_3:67952326-67952345 Msa1119110:exon 25.0%
! AATTTGGAAGCTAAGAAAAT+GGG + chr7_3:67952327-67952346 Msa1119110:exon 25.0%
! GACTTCATAAAGTATAGTAT+AGG - chr7_3:67952809-67952828 None:intergenic 25.0%
! TATACTTTATGAAGTCTCTA+AGG + chr7_3:67952813-67952832 Msa1119110:intron 25.0%
!! AAACATTGTCAATTTTGTCT+TGG - chr7_3:67953049-67953068 None:intergenic 25.0%
!!! TTTAGTGACTTGTTTTGTAT+AGG + chr7_3:67953281-67953300 Msa1119110:intron 25.0%
!!! TTAGTGACTTGTTTTGTATA+GGG + chr7_3:67953282-67953301 Msa1119110:intron 25.0%
! AAGTATCATAATATGACATG+TGG + chr7_3:67953391-67953410 Msa1119110:intron 25.0%
! ATTGAAATCAATTGCAGTAT+TGG - chr7_3:67953455-67953474 None:intergenic 25.0%
! TATCTTGATGTTGATACAAA+TGG + chr7_3:67953532-67953551 Msa1119110:intron 25.0%
!!! TTTTTGGTCATTATGTTCTT+CGG + chr7_3:67953687-67953706 Msa1119110:intron 25.0%
! TCTAATTTCATCTTTACCTT+TGG + chr7_3:67953788-67953807 Msa1119110:intron 25.0%
! AGTTTGCAATAACATCAAAA+AGG - chr7_3:67954045-67954064 None:intergenic 25.0%
! ATTAAAAACTCTAGCTGATA+TGG + chr7_3:67954344-67954363 Msa1119110:three_prime_UTR 25.0%
!! TTTTATCTTTTACCTACACT+TGG + chr7_3:67954380-67954399 Msa1119110:three_prime_UTR 25.0%
! GTCGATGGATAAATAATATT+TGG + chr7_3:67954461-67954480 Msa1119110:three_prime_UTR 25.0%
TTATGAAGCTTAAAAAAGGG+TGG - chr7_3:67952252-67952271 None:intergenic 30.0%
CGGTTATGAAGCTTAAAAAA+GGG - chr7_3:67952255-67952274 None:intergenic 30.0%
TCGGTTATGAAGCTTAAAAA+AGG - chr7_3:67952256-67952275 None:intergenic 30.0%
CGAACAAAACACACAAAATT+TGG + chr7_3:67952311-67952330 Msa1119110:five_prime_UTR 30.0%
TTGAACCTGGAAAATTCATT+CGG + chr7_3:67952451-67952470 Msa1119110:CDS 30.0%
AGCAAATTGGGAATAGAATA+GGG - chr7_3:67952567-67952586 None:intergenic 30.0%
AAGCAAATTGGGAATAGAAT+AGG - chr7_3:67952568-67952587 None:intergenic 30.0%
AAATATGCTAAAACCACCAA+AGG + chr7_3:67952883-67952902 Msa1119110:intron 30.0%
GAATGATCATTTGGATCAAT+TGG + chr7_3:67952953-67952972 Msa1119110:intron 30.0%
TCATTTGGATCAATTGGAAA+TGG + chr7_3:67952959-67952978 Msa1119110:intron 30.0%
ACTTTACCTGAAAAGAACAT+TGG + chr7_3:67953129-67953148 Msa1119110:intron 30.0%
! ATTGTACCAATGTTCTTTTC+AGG - chr7_3:67953138-67953157 None:intergenic 30.0%
TTTCGAAAATCAGGTTTCTT+GGG - chr7_3:67953259-67953278 None:intergenic 30.0%
!! TTTGTATAGGGTTGTTTTAC+AGG + chr7_3:67953294-67953313 Msa1119110:intron 30.0%
TCAACATCAAGATACTTTGA+TGG - chr7_3:67953526-67953545 None:intergenic 30.0%
! TTTTGGTCATTATGTTCTTC+GGG + chr7_3:67953688-67953707 Msa1119110:intron 30.0%
ATCTCTGCATCAAATATAGA+GGG - chr7_3:67954070-67954089 None:intergenic 30.0%
TACAAGTATGCCCTTTAATA+AGG + chr7_3:67954271-67954290 Msa1119110:three_prime_UTR 30.0%
CTGAGAAACACCTTATTAAA+GGG - chr7_3:67954284-67954303 None:intergenic 30.0%
ACTGAGAAACACCTTATTAA+AGG - chr7_3:67954285-67954304 None:intergenic 30.0%
TTATGAAGCTTAAAAAAGGG+TGG - chr7_3:67952252-67952271 None:intergenic 30.0%
CGGTTATGAAGCTTAAAAAA+GGG - chr7_3:67952255-67952274 None:intergenic 30.0%
TCGGTTATGAAGCTTAAAAA+AGG - chr7_3:67952256-67952275 None:intergenic 30.0%
CGAACAAAACACACAAAATT+TGG + chr7_3:67952311-67952330 Msa1119110:five_prime_UTR 30.0%
TTGAACCTGGAAAATTCATT+CGG + chr7_3:67952451-67952470 Msa1119110:CDS 30.0%
AGCAAATTGGGAATAGAATA+GGG - chr7_3:67952567-67952586 None:intergenic 30.0%
AAGCAAATTGGGAATAGAAT+AGG - chr7_3:67952568-67952587 None:intergenic 30.0%
AAATATGCTAAAACCACCAA+AGG + chr7_3:67952883-67952902 Msa1119110:intron 30.0%
GAATGATCATTTGGATCAAT+TGG + chr7_3:67952953-67952972 Msa1119110:intron 30.0%
TCATTTGGATCAATTGGAAA+TGG + chr7_3:67952959-67952978 Msa1119110:intron 30.0%
ACTTTACCTGAAAAGAACAT+TGG + chr7_3:67953129-67953148 Msa1119110:intron 30.0%
! ATTGTACCAATGTTCTTTTC+AGG - chr7_3:67953138-67953157 None:intergenic 30.0%
TTTCGAAAATCAGGTTTCTT+GGG - chr7_3:67953259-67953278 None:intergenic 30.0%
!! TTTGTATAGGGTTGTTTTAC+AGG + chr7_3:67953294-67953313 Msa1119110:intron 30.0%
TCAACATCAAGATACTTTGA+TGG - chr7_3:67953526-67953545 None:intergenic 30.0%
! TTTTGGTCATTATGTTCTTC+GGG + chr7_3:67953688-67953707 Msa1119110:intron 30.0%
ATCTCTGCATCAAATATAGA+GGG - chr7_3:67954070-67954089 None:intergenic 30.0%
TACAAGTATGCCCTTTAATA+AGG + chr7_3:67954271-67954290 Msa1119110:three_prime_UTR 30.0%
CTGAGAAACACCTTATTAAA+GGG - chr7_3:67954284-67954303 None:intergenic 30.0%
ACTGAGAAACACCTTATTAA+AGG - chr7_3:67954285-67954304 None:intergenic 30.0%
AAAGGGTGGTTTCAATAACT+TGG - chr7_3:67952238-67952257 None:intergenic 35.0%
GATAACAACAACTCTTCTTC+AGG + chr7_3:67952369-67952388 Msa1119110:CDS 35.0%
! TTTTCCAGGTTCAACTTCTT+CGG - chr7_3:67952445-67952464 None:intergenic 35.0%
! CATTTCCGAATGAATTTTCC+AGG - chr7_3:67952459-67952478 None:intergenic 35.0%
AGGTATTAGGATTAGGATGA+TGG + chr7_3:67952606-67952625 Msa1119110:intron 35.0%
GGTATTAGGATTAGGATGAT+GGG + chr7_3:67952607-67952626 Msa1119110:intron 35.0%
! TGATTTTGCAAAAGCTACAC+AGG - chr7_3:67952714-67952733 None:intergenic 35.0%
! ATTTTATTCTGCCAAACCGA+TGG + chr7_3:67952737-67952756 Msa1119110:intron 35.0%
TACAAATTTGAGCACACGTT+TGG - chr7_3:67952768-67952787 None:intergenic 35.0%
AAACCACCAAAGGTTTCATT+TGG + chr7_3:67952893-67952912 Msa1119110:intron 35.0%
AGCATTAAGGATCAGAAAGT+CGG - chr7_3:67953021-67953040 None:intergenic 35.0%
CTTTCGAAAATCAGGTTTCT+TGG - chr7_3:67953260-67953279 None:intergenic 35.0%
CACTAAAGCTTTCGAAAATC+AGG - chr7_3:67953268-67953287 None:intergenic 35.0%
TGTTCTATTTGTGTAGTGTG+TGG + chr7_3:67953418-67953437 Msa1119110:intron 35.0%
GTTCTATTTGTGTAGTGTGT+GGG + chr7_3:67953419-67953438 Msa1119110:intron 35.0%
!! AAATCAATTGCAGTATTGGC+AGG - chr7_3:67953451-67953470 None:intergenic 35.0%
GATGAAACAGGTACACAAAA+AGG - chr7_3:67953738-67953757 None:intergenic 35.0%
TTACCTTTGGACTAATTCTC+AGG + chr7_3:67953801-67953820 Msa1119110:intron 35.0%
ACGAAGTGATATTGAAGTCA+TGG + chr7_3:67953958-67953977 Msa1119110:CDS 35.0%
GCAGCTGAAGAAATGAAAAA+TGG + chr7_3:67954019-67954038 Msa1119110:CDS 35.0%
CATCTCTGCATCAAATATAG+AGG - chr7_3:67954071-67954090 None:intergenic 35.0%
GGGATACCTATTGAAGATAA+TGG + chr7_3:67954106-67954125 Msa1119110:CDS 35.0%
! TACCTATTGAAGATAATGGC+CGG + chr7_3:67954110-67954129 Msa1119110:CDS 35.0%
! ATTTAGGATGAGTTTCTTGC+CGG - chr7_3:67954132-67954151 None:intergenic 35.0%
AGAAACTCATCCTAAATCCA+AGG + chr7_3:67954135-67954154 Msa1119110:CDS 35.0%
TCATCCTAAATCCAAGGATA+CGG + chr7_3:67954141-67954160 Msa1119110:CDS 35.0%
!! TGATACTGATTTCTCTGCAT+TGG + chr7_3:67954171-67954190 Msa1119110:CDS 35.0%
TGTGTTAGATCACAAACATC+TGG + chr7_3:67954246-67954265 Msa1119110:three_prime_UTR 35.0%
TATCTTTATGCCAGTTGCTT+AGG + chr7_3:67954304-67954323 Msa1119110:three_prime_UTR 35.0%
AGAAAACAAACCTAAGCAAC+TGG - chr7_3:67954317-67954336 None:intergenic 35.0%
! TTTTACCTACACTTGGTTAC+AGG + chr7_3:67954387-67954406 Msa1119110:three_prime_UTR 35.0%
AAAGGGTGGTTTCAATAACT+TGG - chr7_3:67952238-67952257 None:intergenic 35.0%
GATAACAACAACTCTTCTTC+AGG + chr7_3:67952369-67952388 Msa1119110:CDS 35.0%
! TTTTCCAGGTTCAACTTCTT+CGG - chr7_3:67952445-67952464 None:intergenic 35.0%
! CATTTCCGAATGAATTTTCC+AGG - chr7_3:67952459-67952478 None:intergenic 35.0%
AGGTATTAGGATTAGGATGA+TGG + chr7_3:67952606-67952625 Msa1119110:intron 35.0%
GGTATTAGGATTAGGATGAT+GGG + chr7_3:67952607-67952626 Msa1119110:intron 35.0%
! TGATTTTGCAAAAGCTACAC+AGG - chr7_3:67952714-67952733 None:intergenic 35.0%
! ATTTTATTCTGCCAAACCGA+TGG + chr7_3:67952737-67952756 Msa1119110:intron 35.0%
TACAAATTTGAGCACACGTT+TGG - chr7_3:67952768-67952787 None:intergenic 35.0%
AAACCACCAAAGGTTTCATT+TGG + chr7_3:67952893-67952912 Msa1119110:intron 35.0%
AGCATTAAGGATCAGAAAGT+CGG - chr7_3:67953021-67953040 None:intergenic 35.0%
CTTTCGAAAATCAGGTTTCT+TGG - chr7_3:67953260-67953279 None:intergenic 35.0%
CACTAAAGCTTTCGAAAATC+AGG - chr7_3:67953268-67953287 None:intergenic 35.0%
TGTTCTATTTGTGTAGTGTG+TGG + chr7_3:67953418-67953437 Msa1119110:intron 35.0%
GTTCTATTTGTGTAGTGTGT+GGG + chr7_3:67953419-67953438 Msa1119110:intron 35.0%
!! AAATCAATTGCAGTATTGGC+AGG - chr7_3:67953451-67953470 None:intergenic 35.0%
GATGAAACAGGTACACAAAA+AGG - chr7_3:67953738-67953757 None:intergenic 35.0%
TTACCTTTGGACTAATTCTC+AGG + chr7_3:67953801-67953820 Msa1119110:intron 35.0%
ACGAAGTGATATTGAAGTCA+TGG + chr7_3:67953958-67953977 Msa1119110:CDS 35.0%
GCAGCTGAAGAAATGAAAAA+TGG + chr7_3:67954019-67954038 Msa1119110:CDS 35.0%
CATCTCTGCATCAAATATAG+AGG - chr7_3:67954071-67954090 None:intergenic 35.0%
GGGATACCTATTGAAGATAA+TGG + chr7_3:67954106-67954125 Msa1119110:CDS 35.0%
! TACCTATTGAAGATAATGGC+CGG + chr7_3:67954110-67954129 Msa1119110:CDS 35.0%
! ATTTAGGATGAGTTTCTTGC+CGG - chr7_3:67954132-67954151 None:intergenic 35.0%
AGAAACTCATCCTAAATCCA+AGG + chr7_3:67954135-67954154 Msa1119110:CDS 35.0%
TCATCCTAAATCCAAGGATA+CGG + chr7_3:67954141-67954160 Msa1119110:CDS 35.0%
!! TGATACTGATTTCTCTGCAT+TGG + chr7_3:67954171-67954190 Msa1119110:CDS 35.0%
TGTGTTAGATCACAAACATC+TGG + chr7_3:67954246-67954265 Msa1119110:three_prime_UTR 35.0%
TATCTTTATGCCAGTTGCTT+AGG + chr7_3:67954304-67954323 Msa1119110:three_prime_UTR 35.0%
AGAAAACAAACCTAAGCAAC+TGG - chr7_3:67954317-67954336 None:intergenic 35.0%
! TTTTACCTACACTTGGTTAC+AGG + chr7_3:67954387-67954406 Msa1119110:three_prime_UTR 35.0%
GTGGTTTCAATAACTTGGAC+AGG - chr7_3:67952233-67952252 None:intergenic 40.0%
TGGAAGCTAAGAAAATGGGT+TGG + chr7_3:67952331-67952350 Msa1119110:exon 40.0%
! GGAAGCTAAGAAAATGGGTT+GGG + chr7_3:67952332-67952351 Msa1119110:exon 40.0%
!! CTAAGAAAATGGGTTGGGTT+TGG + chr7_3:67952337-67952356 Msa1119110:exon 40.0%
AAAACCGAAGAAGTTGAACC+TGG + chr7_3:67952438-67952457 Msa1119110:CDS 40.0%
ATCGCTCCAAATGAAACCTT+TGG - chr7_3:67952902-67952921 None:intergenic 40.0%
! TGTCTTGGCATAGAGCATTA+AGG - chr7_3:67953034-67953053 None:intergenic 40.0%
!! GGTTGTTTTACAGGCTTTGA+AGG + chr7_3:67953303-67953322 Msa1119110:intron 40.0%
TAGGTATTAGGGTTATGCAC+AGG + chr7_3:67953574-67953593 Msa1119110:intron 40.0%
TTTGATTGCAGCACTTCAAC+AGG - chr7_3:67953827-67953846 None:intergenic 40.0%
AGAAGAAGATATCACCAGTG+AGG + chr7_3:67953859-67953878 Msa1119110:CDS 40.0%
ATGGAATGTTCAACTTCCCT+GGG + chr7_3:67953933-67953952 Msa1119110:CDS 40.0%
GATTCCGTATCCTTGGATTT+AGG - chr7_3:67954148-67954167 None:intergenic 40.0%
CATAACCTGTAACCAAGTGT+AGG - chr7_3:67954395-67954414 None:intergenic 40.0%
! TTAGCTAGTTTCTCTGTCGA+TGG + chr7_3:67954446-67954465 Msa1119110:three_prime_UTR 40.0%
GTGGTTTCAATAACTTGGAC+AGG - chr7_3:67952233-67952252 None:intergenic 40.0%
TGGAAGCTAAGAAAATGGGT+TGG + chr7_3:67952331-67952350 Msa1119110:exon 40.0%
! GGAAGCTAAGAAAATGGGTT+GGG + chr7_3:67952332-67952351 Msa1119110:exon 40.0%
!! CTAAGAAAATGGGTTGGGTT+TGG + chr7_3:67952337-67952356 Msa1119110:exon 40.0%
AAAACCGAAGAAGTTGAACC+TGG + chr7_3:67952438-67952457 Msa1119110:CDS 40.0%
ATCGCTCCAAATGAAACCTT+TGG - chr7_3:67952902-67952921 None:intergenic 40.0%
! TGTCTTGGCATAGAGCATTA+AGG - chr7_3:67953034-67953053 None:intergenic 40.0%
!! GGTTGTTTTACAGGCTTTGA+AGG + chr7_3:67953303-67953322 Msa1119110:intron 40.0%
TAGGTATTAGGGTTATGCAC+AGG + chr7_3:67953574-67953593 Msa1119110:intron 40.0%
TTTGATTGCAGCACTTCAAC+AGG - chr7_3:67953827-67953846 None:intergenic 40.0%
AGAAGAAGATATCACCAGTG+AGG + chr7_3:67953859-67953878 Msa1119110:CDS 40.0%
ATGGAATGTTCAACTTCCCT+GGG + chr7_3:67953933-67953952 Msa1119110:CDS 40.0%
GATTCCGTATCCTTGGATTT+AGG - chr7_3:67954148-67954167 None:intergenic 40.0%
CATAACCTGTAACCAAGTGT+AGG - chr7_3:67954395-67954414 None:intergenic 40.0%
! TTAGCTAGTTTCTCTGTCGA+TGG + chr7_3:67954446-67954465 Msa1119110:three_prime_UTR 40.0%
TGTTTGTGTTCCTCCTCACT+AGG - chr7_3:67952279-67952298 None:intergenic 45.0%
AGATTTCACGACTTTCCTGG+TGG - chr7_3:67952412-67952431 None:intergenic 45.0%
CTGAGATTTCACGACTTTCC+TGG - chr7_3:67952415-67952434 None:intergenic 45.0%
!! GTTTGGATTAGCCATCGGTT+TGG - chr7_3:67952751-67952770 None:intergenic 45.0%
!! CACACGTTTGGATTAGCCAT+CGG - chr7_3:67952756-67952775 None:intergenic 45.0%
GCTCCAAATGAAACCTTTGG+TGG - chr7_3:67952899-67952918 None:intergenic 45.0%
! GTTGTCGTTTGCATCATAGC+AGG + chr7_3:67953158-67953177 Msa1119110:intron 45.0%
GCATCATAGCAGGAAGAGAA+TGG + chr7_3:67953168-67953187 Msa1119110:intron 45.0%
CATGTACATGCACAAGTGAC+AGG - chr7_3:67953196-67953215 None:intergenic 45.0%
CACTTGTGCATGTACATGTG+TGG + chr7_3:67953198-67953217 Msa1119110:intron 45.0%
!! GCACAAGTAGCACCACTTTT+TGG + chr7_3:67953493-67953512 Msa1119110:intron 45.0%
! GATGGAGCACTTCCAAAAAG+TGG - chr7_3:67953508-67953527 None:intergenic 45.0%
TTCAGTCGCATTTGCAGAGA+GGG - chr7_3:67953766-67953785 None:intergenic 45.0%
TTTCAGTCGCATTTGCAGAG+AGG - chr7_3:67953767-67953786 None:intergenic 45.0%
AGGCCTGAGAATTAGTCCAA+AGG - chr7_3:67953807-67953826 None:intergenic 45.0%
! ATCACCAGTGAGGTACTTAG+AGG + chr7_3:67953869-67953888 Msa1119110:CDS 45.0%
! GCTATTTGCTGAGCCAAATG+TGG - chr7_3:67953903-67953922 None:intergenic 45.0%
GCAAATAGCTCATCAGACCA+TGG + chr7_3:67953914-67953933 Msa1119110:CDS 45.0%
CAGGGAAGTTGAACATTCCA+TGG - chr7_3:67953934-67953953 None:intergenic 45.0%
CATGGAATGTTCAACTTCCC+TGG + chr7_3:67953932-67953951 Msa1119110:CDS 45.0%
CAATATCACTTCGTAGCCCA+GGG - chr7_3:67953952-67953971 None:intergenic 45.0%
TCAATATCACTTCGTAGCCC+AGG - chr7_3:67953953-67953972 None:intergenic 45.0%
TGCCGGCCATTATCTTCAAT+AGG - chr7_3:67954115-67954134 None:intergenic 45.0%
! ATCAGCTGATTCCGTATCCT+TGG - chr7_3:67954155-67954174 None:intergenic 45.0%
AGCTGATATGGCATGTATCG+AGG + chr7_3:67954356-67954375 Msa1119110:three_prime_UTR 45.0%
GCTGATATGGCATGTATCGA+GGG + chr7_3:67954357-67954376 Msa1119110:three_prime_UTR 45.0%
TGTTTGTGTTCCTCCTCACT+AGG - chr7_3:67952279-67952298 None:intergenic 45.0%
AGATTTCACGACTTTCCTGG+TGG - chr7_3:67952412-67952431 None:intergenic 45.0%
CTGAGATTTCACGACTTTCC+TGG - chr7_3:67952415-67952434 None:intergenic 45.0%
!! GTTTGGATTAGCCATCGGTT+TGG - chr7_3:67952751-67952770 None:intergenic 45.0%
!! CACACGTTTGGATTAGCCAT+CGG - chr7_3:67952756-67952775 None:intergenic 45.0%
GCTCCAAATGAAACCTTTGG+TGG - chr7_3:67952899-67952918 None:intergenic 45.0%
! GTTGTCGTTTGCATCATAGC+AGG + chr7_3:67953158-67953177 Msa1119110:intron 45.0%
GCATCATAGCAGGAAGAGAA+TGG + chr7_3:67953168-67953187 Msa1119110:intron 45.0%
CATGTACATGCACAAGTGAC+AGG - chr7_3:67953196-67953215 None:intergenic 45.0%
CACTTGTGCATGTACATGTG+TGG + chr7_3:67953198-67953217 Msa1119110:intron 45.0%
!! GCACAAGTAGCACCACTTTT+TGG + chr7_3:67953493-67953512 Msa1119110:intron 45.0%
! GATGGAGCACTTCCAAAAAG+TGG - chr7_3:67953508-67953527 None:intergenic 45.0%
TTCAGTCGCATTTGCAGAGA+GGG - chr7_3:67953766-67953785 None:intergenic 45.0%
TTTCAGTCGCATTTGCAGAG+AGG - chr7_3:67953767-67953786 None:intergenic 45.0%
AGGCCTGAGAATTAGTCCAA+AGG - chr7_3:67953807-67953826 None:intergenic 45.0%
! ATCACCAGTGAGGTACTTAG+AGG + chr7_3:67953869-67953888 Msa1119110:CDS 45.0%
! GCTATTTGCTGAGCCAAATG+TGG - chr7_3:67953903-67953922 None:intergenic 45.0%
GCAAATAGCTCATCAGACCA+TGG + chr7_3:67953914-67953933 Msa1119110:CDS 45.0%
CAGGGAAGTTGAACATTCCA+TGG - chr7_3:67953934-67953953 None:intergenic 45.0%
CATGGAATGTTCAACTTCCC+TGG + chr7_3:67953932-67953951 Msa1119110:CDS 45.0%
CAATATCACTTCGTAGCCCA+GGG - chr7_3:67953952-67953971 None:intergenic 45.0%
TCAATATCACTTCGTAGCCC+AGG - chr7_3:67953953-67953972 None:intergenic 45.0%
TGCCGGCCATTATCTTCAAT+AGG - chr7_3:67954115-67954134 None:intergenic 45.0%
! ATCAGCTGATTCCGTATCCT+TGG - chr7_3:67954155-67954174 None:intergenic 45.0%
AGCTGATATGGCATGTATCG+AGG + chr7_3:67954356-67954375 Msa1119110:three_prime_UTR 45.0%
GCTGATATGGCATGTATCGA+GGG + chr7_3:67954357-67954376 Msa1119110:three_prime_UTR 45.0%
GCTTCATAACCGACCTAGTG+AGG + chr7_3:67952263-67952282 Msa1119110:five_prime_UTR 50.0%
TCATAACCGACCTAGTGAGG+AGG + chr7_3:67952266-67952285 Msa1119110:five_prime_UTR 50.0%
TGTGTTCCTCCTCACTAGGT+CGG - chr7_3:67952275-67952294 None:intergenic 50.0%
GAGCTTCTCAAAACTTGCGC+TGG + chr7_3:67952492-67952511 Msa1119110:CDS 50.0%
! AGTGAGTGTCGCTGCATGTT+GGG - chr7_3:67953343-67953362 None:intergenic 50.0%
! ACCAGTGAGGTACTTAGAGG+AGG + chr7_3:67953872-67953891 Msa1119110:CDS 50.0%
! CCAGTGAGGTACTTAGAGGA+GGG + chr7_3:67953873-67953892 Msa1119110:CDS 50.0%
TAGGTATCCCTCGCCTCATA+CGG - chr7_3:67954096-67954115 None:intergenic 50.0%
GCTTCATAACCGACCTAGTG+AGG + chr7_3:67952263-67952282 Msa1119110:five_prime_UTR 50.0%
TCATAACCGACCTAGTGAGG+AGG + chr7_3:67952266-67952285 Msa1119110:five_prime_UTR 50.0%
TGTGTTCCTCCTCACTAGGT+CGG - chr7_3:67952275-67952294 None:intergenic 50.0%
GAGCTTCTCAAAACTTGCGC+TGG + chr7_3:67952492-67952511 Msa1119110:CDS 50.0%
! AGTGAGTGTCGCTGCATGTT+GGG - chr7_3:67953343-67953362 None:intergenic 50.0%
! ACCAGTGAGGTACTTAGAGG+AGG + chr7_3:67953872-67953891 Msa1119110:CDS 50.0%
! CCAGTGAGGTACTTAGAGGA+GGG + chr7_3:67953873-67953892 Msa1119110:CDS 50.0%
TAGGTATCCCTCGCCTCATA+CGG - chr7_3:67954096-67954115 None:intergenic 50.0%
!! CCTGGTGGAGCATCGTTCAT+CGG - chr7_3:67952397-67952416 None:intergenic 55.0%
! CAGTGAGTGTCGCTGCATGT+TGG - chr7_3:67953344-67953363 None:intergenic 55.0%
GAGAGGGTGGGTGATGAAAC+AGG - chr7_3:67953750-67953769 None:intergenic 55.0%
GTCGCATTTGCAGAGAGGGT+GGG - chr7_3:67953762-67953781 None:intergenic 55.0%
AGTCGCATTTGCAGAGAGGG+TGG - chr7_3:67953763-67953782 None:intergenic 55.0%
CCCTCCTCTAAGTACCTCAC+TGG - chr7_3:67953876-67953895 None:intergenic 55.0%
AGAGGAGGGTCTGCCACATT+TGG + chr7_3:67953887-67953906 Msa1119110:CDS 55.0%
GTCATGGAGCGCAACCTCTT+CGG + chr7_3:67953974-67953993 Msa1119110:CDS 55.0%
ATGCAGAGATGCCCCGTATG+AGG + chr7_3:67954080-67954099 Msa1119110:CDS 55.0%
AGGTATCCCTCGCCTCATAC+GGG - chr7_3:67954095-67954114 None:intergenic 55.0%
!! CCTGGTGGAGCATCGTTCAT+CGG - chr7_3:67952397-67952416 None:intergenic 55.0%
! CAGTGAGTGTCGCTGCATGT+TGG - chr7_3:67953344-67953363 None:intergenic 55.0%
GAGAGGGTGGGTGATGAAAC+AGG - chr7_3:67953750-67953769 None:intergenic 55.0%
GTCGCATTTGCAGAGAGGGT+GGG - chr7_3:67953762-67953781 None:intergenic 55.0%
AGTCGCATTTGCAGAGAGGG+TGG - chr7_3:67953763-67953782 None:intergenic 55.0%
CCCTCCTCTAAGTACCTCAC+TGG - chr7_3:67953876-67953895 None:intergenic 55.0%
AGAGGAGGGTCTGCCACATT+TGG + chr7_3:67953887-67953906 Msa1119110:CDS 55.0%
GTCATGGAGCGCAACCTCTT+CGG + chr7_3:67953974-67953993 Msa1119110:CDS 55.0%
ATGCAGAGATGCCCCGTATG+AGG + chr7_3:67954080-67954099 Msa1119110:CDS 55.0%
AGGTATCCCTCGCCTCATAC+GGG - chr7_3:67954095-67954114 None:intergenic 55.0%
CCGATGAACGATGCTCCACC+AGG + chr7_3:67952394-67952413 Msa1119110:CDS 60.0%
ATGGAGCGCAACCTCTTCGG+TGG + chr7_3:67953977-67953996 Msa1119110:CDS 60.0%
CGCAACCTCTTCGGTGGTCT+CGG + chr7_3:67953983-67954002 Msa1119110:CDS 60.0%
AGATGCCCCGTATGAGGCGA+GGG + chr7_3:67954086-67954105 Msa1119110:CDS 60.0%
GGTATCCCTCGCCTCATACG+GGG - chr7_3:67954094-67954113 None:intergenic 60.0%
CCGATGAACGATGCTCCACC+AGG + chr7_3:67952394-67952413 Msa1119110:CDS 60.0%
ATGGAGCGCAACCTCTTCGG+TGG + chr7_3:67953977-67953996 Msa1119110:CDS 60.0%
CGCAACCTCTTCGGTGGTCT+CGG + chr7_3:67953983-67954002 Msa1119110:CDS 60.0%
AGATGCCCCGTATGAGGCGA+GGG + chr7_3:67954086-67954105 Msa1119110:CDS 60.0%
GGTATCCCTCGCCTCATACG+GGG - chr7_3:67954094-67954113 None:intergenic 60.0%
AGCGACCGAGACCACCGAAG+AGG - chr7_3:67953991-67954010 None:intergenic 65.0%
GAGATGCCCCGTATGAGGCG+AGG + chr7_3:67954085-67954104 Msa1119110:CDS 65.0%
AGCGACCGAGACCACCGAAG+AGG - chr7_3:67953991-67954010 None:intergenic 65.0%
GAGATGCCCCGTATGAGGCG+AGG + chr7_3:67954085-67954104 Msa1119110:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 67952203 67954484 67952203 ID=Msa1119110;Name=Msa1119110
chr7_3 mRNA 67952203 67954484 67952203 ID=Msa1119110-mRNA-1;Parent=Msa1119110;Name=Msa1119110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=142|1|1|1|1|1|2|277|185
chr7_3 exon 67952203 67952517 67952203 ID=Msa1119110-mRNA-1:exon:16815;Parent=Msa1119110-mRNA-1
chr7_3 exon 67953823 67954484 67953823 ID=Msa1119110-mRNA-1:exon:16816;Parent=Msa1119110-mRNA-1
chr7_3 five_prime_UTR 67952203 67952344 67952203 ID=Msa1119110-mRNA-1:five_prime_utr;Parent=Msa1119110-mRNA-1
chr7_3 CDS 67952345 67952517 67952345 ID=Msa1119110-mRNA-1:cds;Parent=Msa1119110-mRNA-1
chr7_3 CDS 67953823 67954207 67953823 ID=Msa1119110-mRNA-1:cds;Parent=Msa1119110-mRNA-1
chr7_3 three_prime_UTR 67954208 67954484 67954208 ID=Msa1119110-mRNA-1:three_prime_utr;Parent=Msa1119110-mRNA-1
Gene Sequence

>Msa1119110

ATGGGTTGGGTTTGGAGCGACGACGATAACAACAACTCTTCTTCAGGTTCCGATGAACGATGCTCCACCAGGAAAGTCGTGAAATCTCAGTGCAAAACCGAAGAAGTTGAACCTGGAAAATTCATTCGGAAATGCGAGAAAACTGAAGAGCTTCTCAAAACTTGCGCTGGAAAGCCTGTTGAAGTGCTGCAATCAAACAAAGAGTACACAGAAGAAGATATCACCAGTGAGGTACTTAGAGGAGGGTCTGCCACATTTGGCTCAGCAAATAGCTCATCAGACCATGGAATGTTCAACTTCCCTGGGCTACGAAGTGATATTGAAGTCATGGAGCGCAACCTCTTCGGTGGTCTCGGTCGCTTCTTTGAAGCAGCTGAAGAAATGAAAAATGGCCTTTTTGATGTTATTGCAAACTCTCCCTCTATATTTGATGCAGAGATGCCCCGTATGAGGCGAGGGATACCTATTGAAGATAATGGCCGGCAAGAAACTCATCCTAAATCCAAGGATACGGAATCAGCTGATACTGATTTCTCTGCATTGGCTAAAGATGTTTAA
Protein sequence

>Msa1119110

MGWVWSDDDNNNSSSGSDERCSTRKVVKSQCKTEEVEPGKFIRKCEKTEELLKTCAGKPVEVLQSNKEYTEEDITSEVLRGGSATFGSANSSSDHGMFNFPGLRSDIEVMERNLFGGLGRFFEAAEEMKNGLFDVIANSPSIFDAEMPRMRRGIPIEDNGRQETHPKSKDTESADTDFSALAKDV*