AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0379410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379410 MtrunA17_Chr3g0132391 99.398 166 1 0 1 166 612 777 6.88e-117 348
Msa0379410 MtrunA17_Chr8g0389131 36.313 179 95 4 1 162 604 780 7.79e-31 117
Msa0379410 MtrunA17_Chr7g0259581 30.481 187 103 7 2 164 666 849 7.97e-17 77.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379410 AT4G09020.1 71.687 166 46 1 1 165 599 764 3.72e-85 265
Msa0379410 AT2G39930.1 36.872 179 94 4 1 162 599 775 1.31e-28 111
Msa0379410 AT2G39930.2 53.448 58 27 0 1 58 599 656 2.34e-15 73.2
Msa0379410 AT1G03310.2 26.042 192 107 6 2 163 690 876 4.61e-11 60.8
Msa0379410 AT1G03310.1 26.042 192 107 6 2 163 690 876 4.61e-11 60.8

Find 61 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGAAGGGCGATCACTTT+AGG 0.274375 3_1:+80536306 Msa0379410:CDS
TGTTATTTCCGTAGCGAGTA+TGG 0.279104 3_1:-80536156 None:intergenic
CACGAATCAAGGGGAATAAT+TGG 0.289610 3_1:+80540255 Msa0379410:three_prime_UTR
ATATTGTTATATTGTAATCT+TGG 0.328007 3_1:+80540456 Msa0379410:three_prime_UTR
TGCAAGGTACAAGCTACTTT+AGG 0.333272 3_1:+80540330 Msa0379410:three_prime_UTR
GGATGAAAATGCTCTGAATT+AGG 0.342003 3_1:+80540130 Msa0379410:three_prime_UTR
TAGGGCGGTCCTACGAAGTT+TGG 0.357052 3_1:+80540349 Msa0379410:three_prime_UTR
TAGTCCAGAAAAGAATAAAA+AGG 0.359857 3_1:+80540051 Msa0379410:three_prime_UTR
TAACATGGCATGAAGACAAT+TGG 0.360246 3_1:+80536514 Msa0379410:CDS
AATGCTCTGAATTAGGTTCT+TGG 0.364193 3_1:+80540137 Msa0379410:three_prime_UTR
GCAAGGTACAAGCTACTTTA+GGG 0.372762 3_1:+80540331 Msa0379410:three_prime_UTR
ATTAGGTTCTTGGCTCAGTA+TGG 0.384064 3_1:+80540147 Msa0379410:three_prime_UTR
GGGAACACCGATGATGCTAA+TGG 0.391733 3_1:+80536120 Msa0379410:CDS
CAATTATTCCCCTTGATTCG+TGG 0.393278 3_1:-80540254 None:intergenic
CAACTTCTGCGATCAAAACT+TGG 0.411633 3_1:-80540023 None:intergenic
ATCGTCCTCGATGGCGTCCC+AGG 0.419220 3_1:+80539950 Msa0379410:CDS
GGAACACCGATGATGCTAAT+GGG 0.432770 3_1:+80536121 Msa0379410:CDS
ACCATACTCCTCCATTCTTC+TGG 0.434635 3_1:+80539997 Msa0379410:CDS
ATTACAATATAACAATATAT+AGG 0.444259 3_1:-80540451 None:intergenic
TTGTAGTTCACCACGAATCA+AGG 0.447980 3_1:+80540244 Msa0379410:three_prime_UTR
ATATTGTAATCTTGGTTGAA+TGG 0.453375 3_1:+80540464 Msa0379410:three_prime_UTR
CTGTACGTTTCTCCTATGCC+TGG 0.454517 3_1:-80539968 None:intergenic
AGAAGAGAAACGCATCTGTA+TGG 0.461675 3_1:+80540214 Msa0379410:three_prime_UTR
CCATCGAGGACGATGTCATC+AGG 0.462451 3_1:-80539941 None:intergenic
TCCAGAAGAATGGAGGAGTA+TGG 0.462694 3_1:-80539998 None:intergenic
TACGGAAATAACAATAGCTA+TGG 0.465711 3_1:+80536166 Msa0379410:CDS
TATAATGTTGAGAATGGTGC+AGG 0.481840 3_1:+80540300 Msa0379410:three_prime_UTR
AACATGGCATGAAGACAATT+GGG 0.484123 3_1:+80536515 Msa0379410:CDS
AAACTTGGCCTCCAGAAGAA+TGG 0.496571 3_1:-80540008 None:intergenic
CAACATTATATGATTTCAGA+TGG 0.503138 3_1:-80540287 None:intergenic
TCAATAGTTGGATGCAAGGA+AGG 0.517959 3_1:+80536292 Msa0379410:intron
TCTCCAATGCGATAAAGTAC+CGG 0.534057 3_1:+80536333 Msa0379410:CDS
CTCGATGGCGTCCCAGGCAT+AGG 0.537857 3_1:+80539956 Msa0379410:CDS
CCTGATGACATCGTCCTCGA+TGG 0.545315 3_1:+80539941 Msa0379410:CDS
AAATCATATAATGTTGAGAA+TGG 0.558908 3_1:+80540294 Msa0379410:three_prime_UTR
TTGTTCAATAGTTGGATGCA+AGG 0.561289 3_1:+80536288 Msa0379410:intron
TTAGCATCATCGGTGTTCCC+TGG 0.563410 3_1:-80536117 None:intergenic
AGGGGAATAATTGGAGGAGA+GGG 0.563682 3_1:+80540264 Msa0379410:three_prime_UTR
TTCAGGCTTCATGACAAAAG+TGG 0.563894 3_1:+80538961 Msa0379410:intron
AATGTTGTATACACGTGTCT+CGG 0.570017 3_1:+80540076 Msa0379410:three_prime_UTR
ATGCCGGTACTTTATCGCAT+TGG 0.570122 3_1:-80536336 None:intergenic
GAATCAAGGGGAATAATTGG+AGG 0.572593 3_1:+80540258 Msa0379410:three_prime_UTR
TGACATTTATCAAACAGATA+AGG 0.577203 3_1:-80540386 None:intergenic
GAATATGGCCATACTCGCTA+CGG 0.579593 3_1:+80536148 Msa0379410:CDS
TGTAGTTCACCACGAATCAA+GGG 0.582188 3_1:+80540245 Msa0379410:three_prime_UTR
TGTACGTTTCTCCTATGCCT+GGG 0.590508 3_1:-80539967 None:intergenic
TGGTGCAGGGCTTATATGCA+AGG 0.610116 3_1:+80540314 Msa0379410:three_prime_UTR
CAATAGTTGGATGCAAGGAA+GGG 0.613913 3_1:+80536293 Msa0379410:intron
ACGGAAATAACAATAGCTAT+GGG 0.614490 3_1:+80536167 Msa0379410:CDS
GAACACCGATGATGCTAATG+GGG 0.616909 3_1:+80536122 Msa0379410:CDS
CTATGCCTGGGACGCCATCG+AGG 0.629067 3_1:-80539955 None:intergenic
AAGGGGAATAATTGGAGGAG+AGG 0.633091 3_1:+80540263 Msa0379410:three_prime_UTR
ATCTACTATCCAAACTTCGT+AGG 0.644808 3_1:-80540358 None:intergenic
ATACTAAGCTGTAACTTCAG+AGG 0.645062 3_1:-80540170 None:intergenic
CTTGGCCTCCAGAAGAATGG+AGG 0.645128 3_1:-80540005 None:intergenic
ATACTCCTCCATTCTTCTGG+AGG 0.650004 3_1:+80540000 Msa0379410:CDS
AGGCTTCATGACAAAAGTGG+AGG 0.660645 3_1:+80538964 Msa0379410:intron
GTAGTTCACCACGAATCAAG+GGG 0.678015 3_1:+80540246 Msa0379410:three_prime_UTR
AACACCGATGATGCTAATGG+GGG 0.689567 3_1:+80536123 Msa0379410:CDS
ATAATGTTGAGAATGGTGCA+GGG 0.695421 3_1:+80540301 Msa0379410:three_prime_UTR
AGGTACAAGCTACTTTAGGG+CGG 0.746592 3_1:+80540334 Msa0379410:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTAACACTATAAT+AGG - chr3_1:80539578-80539597 None:intergenic 10.0%
!! ATTACAATATAACAATATAT+AGG - chr3_1:80540454-80540473 None:intergenic 10.0%
!!! ATTATTTGATAATATATCCT+TGG + chr3_1:80536970-80536989 Msa0379410:intron 15.0%
!!! ATTATTTGATAATATATCCT+TGG + chr3_1:80536970-80536989 Msa0379410:intron 15.0%
!! TAAAAAACTATATATATTGC+TGG + chr3_1:80538895-80538914 Msa0379410:intron 15.0%
!!! TGTCGTTTTTATAAAATTTA+TGG + chr3_1:80539390-80539409 Msa0379410:intron 15.0%
!!! GTCGTTTTTATAAAATTTAT+GGG + chr3_1:80539391-80539410 Msa0379410:intron 15.0%
!!! TCGTTTTTATAAAATTTATG+GGG + chr3_1:80539392-80539411 Msa0379410:intron 15.0%
!! GTTATATAAATTTCAAAACT+TGG + chr3_1:80539447-80539466 Msa0379410:intron 15.0%
!! ATATTGTTATATTGTAATCT+TGG + chr3_1:80540456-80540475 Msa0379410:three_prime_UTR 15.0%
!! AACTATTGAACAAAAAGATT+AGG - chr3_1:80536281-80536300 None:intergenic 20.0%
!!! TAATCTTTTTGTTCAATAGT+TGG + chr3_1:80536280-80536299 Msa0379410:intron 20.0%
!!! GTAAGTATCCATATTTTAAT+TGG + chr3_1:80536569-80536588 Msa0379410:intron 20.0%
!! TCTCATTTCCAATTAAAATA+TGG - chr3_1:80536580-80536599 None:intergenic 20.0%
!! TTTGATAGGAAATTAGATAT+GGG + chr3_1:80536730-80536749 Msa0379410:intron 20.0%
!! TATCTTTACTACGATTTATT+TGG - chr3_1:80536843-80536862 None:intergenic 20.0%
!! TATATAAGTAAATCTGTAGA+GGG + chr3_1:80537001-80537020 Msa0379410:intron 20.0%
!! TTAACATCAAGATAAATGAT+GGG - chr3_1:80537861-80537880 None:intergenic 20.0%
!! AGTTTCAAAAAATAGTAGAT+CGG - chr3_1:80538045-80538064 None:intergenic 20.0%
!!! TTAATTTGGTATATGATAGA+GGG + chr3_1:80538112-80538131 Msa0379410:intron 20.0%
!! TATCTTTACTACGATTTATT+TGG - chr3_1:80536843-80536862 None:intergenic 20.0%
!! TATATAAGTAAATCTGTAGA+GGG + chr3_1:80537001-80537020 Msa0379410:intron 20.0%
!!! TAAGATTTTCTTCATTCTTT+GGG + chr3_1:80539076-80539095 Msa0379410:intron 20.0%
!!! CGTTTTTATAAAATTTATGG+GGG + chr3_1:80539393-80539412 Msa0379410:intron 20.0%
!!! GTTTTTATAAAATTTATGGG+GGG + chr3_1:80539394-80539413 Msa0379410:intron 20.0%
!!! TTTTTATAAAATTTATGGGG+GGG + chr3_1:80539395-80539414 Msa0379410:intron 20.0%
!! TATAAATTTCAAAACTTGGT+AGG + chr3_1:80539451-80539470 Msa0379410:intron 20.0%
!!! TTTTCCTTTTTATTCTTTTC+TGG - chr3_1:80540058-80540077 None:intergenic 20.0%
!! AAATCATATAATGTTGAGAA+TGG + chr3_1:80540294-80540313 Msa0379410:three_prime_UTR 20.0%
!!! TGCCATTAATTTTTTCTTGT+GGG + chr3_1:80536198-80536217 Msa0379410:CDS 25.0%
! ATCCCACAAGAAAAAATTAA+TGG - chr3_1:80536203-80536222 None:intergenic 25.0%
! TAAATTTATAACATCCCTCT+TGG + chr3_1:80536227-80536246 Msa0379410:intron 25.0%
!!! TTCCTTTTTTGATGGAAAAA+TGG - chr3_1:80536445-80536464 None:intergenic 25.0%
!!! CAGTATTTTTCCTTTTTTGA+TGG - chr3_1:80536453-80536472 None:intergenic 25.0%
!! TTTTGCAGAATGAAATAACA+TGG + chr3_1:80536499-80536518 Msa0379410:intron 25.0%
! CATATCTAATTTCCTATCAA+AGG - chr3_1:80536731-80536750 None:intergenic 25.0%
! CTTTGATAGGAAATTAGATA+TGG + chr3_1:80536729-80536748 Msa0379410:intron 25.0%
! TATCTTCTTACTAACTCTAT+TGG - chr3_1:80536763-80536782 None:intergenic 25.0%
! ACTTATATAGAATACTACCA+AGG - chr3_1:80536990-80537009 None:intergenic 25.0%
! CTATATAAGTAAATCTGTAG+AGG + chr3_1:80537000-80537019 Msa0379410:intron 25.0%
!!! TTATTTGTTAGTACCCTTTT+AGG + chr3_1:80537045-80537064 Msa0379410:intron 25.0%
!!! TATTTGTTAGTACCCTTTTA+GGG + chr3_1:80537046-80537065 Msa0379410:intron 25.0%
! AGTAGATGGAATAAAGAAAA+GGG - chr3_1:80537119-80537138 None:intergenic 25.0%
! AAGTAGATGGAATAAAGAAA+AGG - chr3_1:80537120-80537139 None:intergenic 25.0%
! GGTGAATATTATTAAGTAGA+TGG - chr3_1:80537133-80537152 None:intergenic 25.0%
!! ATTGATTTCTTCTGTGTTAT+TGG + chr3_1:80537170-80537189 Msa0379410:intron 25.0%
!! ACAACAACAAACTTTTCATA+TGG + chr3_1:80537544-80537563 Msa0379410:intron 25.0%
! TAACATCAAGATAAATGATG+GGG - chr3_1:80537860-80537879 None:intergenic 25.0%
! GTTAACATCAAGATAAATGA+TGG - chr3_1:80537862-80537881 None:intergenic 25.0%
!! ATAAAAAAGTTGCATTTTCC+GGG - chr3_1:80537982-80538001 None:intergenic 25.0%
!! CATAAAAAAGTTGCATTTTC+CGG - chr3_1:80537983-80538002 None:intergenic 25.0%
!!! AAATGCAACTTTTTTATGGT+AGG + chr3_1:80537985-80538004 Msa0379410:intron 25.0%
!!! AATGCAACTTTTTTATGGTA+GGG + chr3_1:80537986-80538005 Msa0379410:intron 25.0%
! TTTCAAAAAATAGTAGATCG+GGG - chr3_1:80538043-80538062 None:intergenic 25.0%
! GTTTCAAAAAATAGTAGATC+GGG - chr3_1:80538044-80538063 None:intergenic 25.0%
! TGAAACTTGTATATGACAAA+AGG + chr3_1:80538058-80538077 Msa0379410:intron 25.0%
!! CTTAATTTGGTATATGATAG+AGG + chr3_1:80538111-80538130 Msa0379410:intron 25.0%
! TGATGATAGGAAATTAGATA+TGG + chr3_1:80538303-80538322 Msa0379410:intron 25.0%
! GATGATAGGAAATTAGATAT+GGG + chr3_1:80538304-80538323 Msa0379410:intron 25.0%
! TATCTTCTTACTAACTCTAT+TGG - chr3_1:80536763-80536782 None:intergenic 25.0%
! ACTTATATAGAATACTACCA+AGG - chr3_1:80536990-80537009 None:intergenic 25.0%
! CTATATAAGTAAATCTGTAG+AGG + chr3_1:80537000-80537019 Msa0379410:intron 25.0%
!!! TTATTTGTTAGTACCCTTTT+AGG + chr3_1:80537045-80537064 Msa0379410:intron 25.0%
!!! TATTTGTTAGTACCCTTTTA+GGG + chr3_1:80537046-80537065 Msa0379410:intron 25.0%
! AGTAGATGGAATAAAGAAAA+GGG - chr3_1:80537119-80537138 None:intergenic 25.0%
! AAGTAGATGGAATAAAGAAA+AGG - chr3_1:80537120-80537139 None:intergenic 25.0%
! GGTGAATATTATTAAGTAGA+TGG - chr3_1:80537133-80537152 None:intergenic 25.0%
!! ATTGATTTCTTCTGTGTTAT+TGG + chr3_1:80537170-80537189 Msa0379410:intron 25.0%
! GATGTTCAAAAAAGAAATCT+TGG + chr3_1:80538820-80538839 Msa0379410:intron 25.0%
! ACTATATATATTGCTGGTAA+TGG + chr3_1:80538901-80538920 Msa0379410:intron 25.0%
!! GTAAGATTTTCTTCATTCTT+TGG + chr3_1:80539075-80539094 Msa0379410:intron 25.0%
!!! GCATGCATATTTTAAATCAA+TGG + chr3_1:80539127-80539146 Msa0379410:intron 25.0%
! TTAACACTATAATAGGAATC+AGG - chr3_1:80539571-80539590 None:intergenic 25.0%
! AGATATTAATTACTATGCAG+TGG - chr3_1:80539830-80539849 None:intergenic 25.0%
!!! CATTAGTTTAACTTGAACTA+CGG + chr3_1:80539887-80539906 Msa0379410:intron 25.0%
! TAGTCCAGAAAAGAATAAAA+AGG + chr3_1:80540051-80540070 Msa0379410:three_prime_UTR 25.0%
! CAACATTATATGATTTCAGA+TGG - chr3_1:80540290-80540309 None:intergenic 25.0%
! TGACATTTATCAAACAGATA+AGG - chr3_1:80540389-80540408 None:intergenic 25.0%
! ATATTGTAATCTTGGTTGAA+TGG + chr3_1:80540464-80540483 Msa0379410:three_prime_UTR 25.0%
TACGGAAATAACAATAGCTA+TGG + chr3_1:80536166-80536185 Msa0379410:CDS 30.0%
ACGGAAATAACAATAGCTAT+GGG + chr3_1:80536167-80536186 Msa0379410:CDS 30.0%
!!! CTGCCATTAATTTTTTCTTG+TGG + chr3_1:80536197-80536216 Msa0379410:CDS 30.0%
!!! TAATTTTTTCTTGTGGGATC+AGG + chr3_1:80536204-80536223 Msa0379410:CDS 30.0%
! TCATGAAAATTTTCTCAGTG+AGG + chr3_1:80536376-80536395 Msa0379410:CDS 30.0%
!!! TGCCATTTTTCCATCAAAAA+AGG + chr3_1:80536440-80536459 Msa0379410:intron 30.0%
ATAAGGTGGATGTTCAATAA+AGG + chr3_1:80536692-80536711 Msa0379410:intron 30.0%
CAATAGAAACTAGAGAATAG+TGG - chr3_1:80537154-80537173 None:intergenic 30.0%
!!! CACTGTTATGGTTTTATTCA+TGG + chr3_1:80537414-80537433 Msa0379410:intron 30.0%
AACATCAAGATAAATGATGG+GGG - chr3_1:80537859-80537878 None:intergenic 30.0%
CATTTATCTTGATGTTAACG+TGG + chr3_1:80537863-80537882 Msa0379410:intron 30.0%
GAATTTCAATGCTTGTAACT+TGG + chr3_1:80537885-80537904 Msa0379410:intron 30.0%
! GTTATTGTATTCACCAGTTT+TGG + chr3_1:80537942-80537961 Msa0379410:intron 30.0%
!!! CGGAAAATGCAACTTTTTTA+TGG + chr3_1:80537981-80538000 Msa0379410:intron 30.0%
!!! ATGCAACTTTTTTATGGTAG+GGG + chr3_1:80537987-80538006 Msa0379410:intron 30.0%
! TATATGATAGAGGGAAGTTT+TGG + chr3_1:80538121-80538140 Msa0379410:intron 30.0%
AATTTGCCTGAGAAACAAAT+AGG - chr3_1:80538204-80538223 None:intergenic 30.0%
!!! TATAGCCATTTTTTGCTACT+GGG - chr3_1:80538236-80538255 None:intergenic 30.0%
CAATAGAAACTAGAGAATAG+TGG - chr3_1:80537154-80537173 None:intergenic 30.0%
! AAACCACTTTCTTTTTGTTG+GGG - chr3_1:80539049-80539068 None:intergenic 30.0%
! GAAACCACTTTCTTTTTGTT+GGG - chr3_1:80539050-80539069 None:intergenic 30.0%
TAGCAATTTACGATTCCAAT+CGG - chr3_1:80539221-80539240 None:intergenic 30.0%
CAGAACACAAAAAATCGTAA+CGG - chr3_1:80539286-80539305 None:intergenic 30.0%
!!! TTTTTGTGTTCTGCTATTTC+TGG + chr3_1:80539293-80539312 Msa0379410:intron 30.0%
!!! TTTTGTGTTCTGCTATTTCT+GGG + chr3_1:80539294-80539313 Msa0379410:intron 30.0%
TAAAAACCACCAAAAACATG+AGG - chr3_1:80539424-80539443 None:intergenic 30.0%
TAATAGGAATCAGGTAGTTT+GGG - chr3_1:80539562-80539581 None:intergenic 30.0%
ATAATAGGAATCAGGTAGTT+TGG - chr3_1:80539563-80539582 None:intergenic 30.0%
GTGGAAATAACAAACATACA+AGG - chr3_1:80539679-80539698 None:intergenic 30.0%
TATGCAACTAATTGCTGAAT+TGG + chr3_1:80539699-80539718 Msa0379410:intron 30.0%
! CGTAGTTCAAGTTAAACTAA+TGG - chr3_1:80539889-80539908 None:intergenic 30.0%
AGCTTATTGGGGATTATTTC+TGG + chr3_1:80536251-80536270 Msa0379410:intron 35.0%
TTGTTCAATAGTTGGATGCA+AGG + chr3_1:80536288-80536307 Msa0379410:intron 35.0%
! TCAATGTTTTATGTGCATGC+CGG - chr3_1:80536355-80536374 None:intergenic 35.0%
AATACTGCCAAATGTGCTAA+TGG + chr3_1:80536466-80536485 Msa0379410:intron 35.0%
TAACATGGCATGAAGACAAT+TGG + chr3_1:80536514-80536533 Msa0379410:CDS 35.0%
AACATGGCATGAAGACAATT+GGG + chr3_1:80536515-80536534 Msa0379410:CDS 35.0%
GTTGTCTCAAGATAGTGTTT+AGG - chr3_1:80536648-80536667 None:intergenic 35.0%
!!! TCATGGAGTTTTGGGTAATA+AGG + chr3_1:80536675-80536694 Msa0379410:intron 35.0%
GGATGTTCAAATCCTTTGAT+AGG + chr3_1:80536716-80536735 Msa0379410:intron 35.0%
! TTACTAACTCTATTGGCCTA+AGG - chr3_1:80536756-80536775 None:intergenic 35.0%
AAAGAACTTGCAGATTTCAC+CGG + chr3_1:80537281-80537300 Msa0379410:intron 35.0%
! AAGAGCATATTGATGCAGAT+TGG + chr3_1:80537441-80537460 Msa0379410:intron 35.0%
AGAGCATATTGATGCAGATT+GGG + chr3_1:80537442-80537461 Msa0379410:intron 35.0%
! TTGTTGTTCTTGCATCTTGT+TGG - chr3_1:80537531-80537550 None:intergenic 35.0%
TATGGACGTCACAAAAAAAG+AGG + chr3_1:80537562-80537581 Msa0379410:intron 35.0%
ATGGACGTCACAAAAAAAGA+GGG + chr3_1:80537563-80537582 Msa0379410:intron 35.0%
! ATTAAGATATCTGGCTCAGT+GGG - chr3_1:80537791-80537810 None:intergenic 35.0%
GTGCTTGTCATTAAGATATC+TGG - chr3_1:80537800-80537819 None:intergenic 35.0%
TTTCAATGCTTGTAACTTGG+AGG + chr3_1:80537888-80537907 Msa0379410:intron 35.0%
CAATAACTGCATTGCAACAT+TGG - chr3_1:80537929-80537948 None:intergenic 35.0%
! AGTTTTGCTCTTCAAGCATT+TGG + chr3_1:80538082-80538101 Msa0379410:intron 35.0%
! TCCATTCCTATTTGTTTCTC+AGG + chr3_1:80538195-80538214 Msa0379410:intron 35.0%
! TTGTTTCTCAGGCAAATTGA+AGG + chr3_1:80538206-80538225 Msa0379410:intron 35.0%
!!! CTATAGCCATTTTTTGCTAC+TGG - chr3_1:80538237-80538256 None:intergenic 35.0%
AGAAACTATATCCAACCTTG+AGG + chr3_1:80538255-80538274 Msa0379410:intron 35.0%
! TTACTAACTCTATTGGCCTA+AGG - chr3_1:80536756-80536775 None:intergenic 35.0%
!! TATATTGCTGGTAATGGAGT+CGG + chr3_1:80538907-80538926 Msa0379410:intron 35.0%
! AACCACTTTCTTTTTGTTGG+GGG - chr3_1:80539048-80539067 None:intergenic 35.0%
! CGAAACCACTTTCTTTTTGT+TGG - chr3_1:80539051-80539070 None:intergenic 35.0%
AAAAAGAAAGTGGTTTCGTG+TGG + chr3_1:80539053-80539072 Msa0379410:CDS 35.0%
ACAAAAAGCTTCCAAACAGA+GGG - chr3_1:80539373-80539392 None:intergenic 35.0%
AATAGGAATCAGGTAGTTTG+GGG - chr3_1:80539561-80539580 None:intergenic 35.0%
! TGATTGTGAATTCTGAAGAG+TGG - chr3_1:80539618-80539637 None:intergenic 35.0%
ATCAACCCAATTTGACTAAC+TGG + chr3_1:80539634-80539653 Msa0379410:intron 35.0%
TTCAGCAATTAGTTGCATAG+TGG - chr3_1:80539698-80539717 None:intergenic 35.0%
TAGAAGCTAACATAGCAAAG+TGG + chr3_1:80539755-80539774 Msa0379410:intron 35.0%
AACATAGCAAAGTGGCATTA+TGG + chr3_1:80539763-80539782 Msa0379410:intron 35.0%
CTTGAACTACGGATATTTAC+AGG + chr3_1:80539898-80539917 Msa0379410:intron 35.0%
AATGTTGTATACACGTGTCT+CGG + chr3_1:80540076-80540095 Msa0379410:three_prime_UTR 35.0%
!!! AATCTTCTTTTCAAGTCAGC+TGG + chr3_1:80540109-80540128 Msa0379410:three_prime_UTR 35.0%
! GGATGAAAATGCTCTGAATT+AGG + chr3_1:80540130-80540149 Msa0379410:three_prime_UTR 35.0%
! AATGCTCTGAATTAGGTTCT+TGG + chr3_1:80540137-80540156 Msa0379410:three_prime_UTR 35.0%
ATACTAAGCTGTAACTTCAG+AGG - chr3_1:80540173-80540192 None:intergenic 35.0%
TATAATGTTGAGAATGGTGC+AGG + chr3_1:80540300-80540319 Msa0379410:three_prime_UTR 35.0%
ATAATGTTGAGAATGGTGCA+GGG + chr3_1:80540301-80540320 Msa0379410:three_prime_UTR 35.0%
ATCTACTATCCAAACTTCGT+AGG - chr3_1:80540361-80540380 None:intergenic 35.0%
ATGCTAATGGGGGATGAATA+TGG + chr3_1:80536133-80536152 Msa0379410:CDS 40.0%
!! TGTTATTTCCGTAGCGAGTA+TGG - chr3_1:80536159-80536178 None:intergenic 40.0%
! ATCCCTCTTGGTAGCTTATT+GGG + chr3_1:80536239-80536258 Msa0379410:intron 40.0%
TCAATAGTTGGATGCAAGGA+AGG + chr3_1:80536292-80536311 Msa0379410:intron 40.0%
CAATAGTTGGATGCAAGGAA+GGG + chr3_1:80536293-80536312 Msa0379410:intron 40.0%
TCTCCAATGCGATAAAGTAC+CGG + chr3_1:80536333-80536352 Msa0379410:CDS 40.0%
AGCTGTTCCATTAGCACATT+TGG - chr3_1:80536476-80536495 None:intergenic 40.0%
ACTATCTTGAGACAACATCG+TGG + chr3_1:80536652-80536671 Msa0379410:intron 40.0%
!!! TGGAGTTTTGGGTAATAAGG+TGG + chr3_1:80536678-80536697 Msa0379410:intron 40.0%
AGGTGGATGTTCAATAAAGG+TGG + chr3_1:80536695-80536714 Msa0379410:intron 40.0%
GGAAATTAGATATGGGCCTT+AGG + chr3_1:80536737-80536756 Msa0379410:intron 40.0%
!! ATTGGCTCTGCTCTATCAAT+TGG + chr3_1:80537188-80537207 Msa0379410:intron 40.0%
GAGAAGAATGCAATTCACTC+TGG + chr3_1:80537347-80537366 Msa0379410:intron 40.0%
!! AGGATGAAGAAGCACTGTTA+TGG + chr3_1:80537402-80537421 Msa0379410:intron 40.0%
! ATCAGAAGGTTCAGAGGTAT+TGG + chr3_1:80537485-80537504 Msa0379410:intron 40.0%
CGTCACAAAAAAAGAGGGAA+CGG + chr3_1:80537568-80537587 Msa0379410:intron 40.0%
ACGGATAGCCATGGAAAATT+CGG + chr3_1:80537587-80537606 Msa0379410:intron 40.0%
! CATTAAGATATCTGGCTCAG+TGG - chr3_1:80537792-80537811 None:intergenic 40.0%
CAGATTAACGTTTCCAGCTT+CGG + chr3_1:80537826-80537845 Msa0379410:intron 40.0%
AGATTAACGTTTCCAGCTTC+GGG + chr3_1:80537827-80537846 Msa0379410:intron 40.0%
!! ACCAGTTTTGGTAACACCAT+GGG + chr3_1:80537954-80537973 Msa0379410:intron 40.0%
TTTATGGTAGGGGTTGCTTA+TGG + chr3_1:80537997-80538016 Msa0379410:intron 40.0%
CATTTGGATGCGGCTTAATT+TGG + chr3_1:80538098-80538117 Msa0379410:intron 40.0%
!! AGTTTTGGTCCTCAAGCATT+TGG + chr3_1:80538136-80538155 Msa0379410:intron 40.0%
!! GTTTTGGTCCTCAAGCATTT+GGG + chr3_1:80538137-80538156 Msa0379410:intron 40.0%
GCCTGAGAAACAAATAGGAA+TGG - chr3_1:80538199-80538218 None:intergenic 40.0%
TATATCCAACCTTGAGGACA+AGG + chr3_1:80538261-80538280 Msa0379410:intron 40.0%
GAAAAACAACCTTGTCCTCA+AGG - chr3_1:80538273-80538292 None:intergenic 40.0%
!!! GGACAAGGTTGTTTTTCTAG+CGG + chr3_1:80538276-80538295 Msa0379410:intron 40.0%
!!! AAGGTTGTTTTTCTAGCGGT+CGG + chr3_1:80538280-80538299 Msa0379410:intron 40.0%
GGAAATTAGATATGGGCCTT+AGG + chr3_1:80536737-80536756 Msa0379410:intron 40.0%
TGTGTTGCACATATGCATTC+AGG + chr3_1:80538944-80538963 Msa0379410:intron 40.0%
TTCAGGCTTCATGACAAAAG+TGG + chr3_1:80538961-80538980 Msa0379410:intron 40.0%
! TTTCTTTTTGTTGGGGGAGT+GGG - chr3_1:80539042-80539061 None:intergenic 40.0%
!! AAATCAATGGAGCACTGTGA+AGG + chr3_1:80539140-80539159 Msa0379410:intron 40.0%
ATTTACGATTCCAATCGGCA+TGG - chr3_1:80539216-80539235 None:intergenic 40.0%
!!! TATTTCTGGGTTTTCCTGGT+CGG + chr3_1:80539307-80539326 Msa0379410:intron 40.0%
TCCTCAAATATCCCTCTGTT+TGG + chr3_1:80539359-80539378 Msa0379410:intron 40.0%
TCCAAACAGAGGGATATTTG+AGG - chr3_1:80539363-80539382 None:intergenic 40.0%
GACAAAAAGCTTCCAAACAG+AGG - chr3_1:80539374-80539393 None:intergenic 40.0%
AGAATCAGGATCCTAGTATC+GGG - chr3_1:80539527-80539546 None:intergenic 40.0%
CAGAATCAGGATCCTAGTAT+CGG - chr3_1:80539528-80539547 None:intergenic 40.0%
! TGAATTCTGAAGAGTGGACA+AGG - chr3_1:80539612-80539631 None:intergenic 40.0%
TCAGGCCAGTTAGTCAAATT+GGG - chr3_1:80539642-80539661 None:intergenic 40.0%
TTCAGGCCAGTTAGTCAAAT+TGG - chr3_1:80539643-80539662 None:intergenic 40.0%
TAATTGCTGAATTGGCAGCT+GGG + chr3_1:80539707-80539726 Msa0379410:intron 40.0%
GAACTACGGATATTTACAGG+TGG + chr3_1:80539901-80539920 Msa0379410:intron 40.0%
CAACTTCTGCGATCAAAACT+TGG - chr3_1:80540026-80540045 None:intergenic 40.0%
ATTAGGTTCTTGGCTCAGTA+TGG + chr3_1:80540147-80540166 Msa0379410:three_prime_UTR 40.0%
AGAAGAGAAACGCATCTGTA+TGG + chr3_1:80540214-80540233 Msa0379410:three_prime_UTR 40.0%
TTGTAGTTCACCACGAATCA+AGG + chr3_1:80540244-80540263 Msa0379410:three_prime_UTR 40.0%
TGTAGTTCACCACGAATCAA+GGG + chr3_1:80540245-80540264 Msa0379410:three_prime_UTR 40.0%
! CAATTATTCCCCTTGATTCG+TGG - chr3_1:80540257-80540276 None:intergenic 40.0%
CACGAATCAAGGGGAATAAT+TGG + chr3_1:80540255-80540274 Msa0379410:three_prime_UTR 40.0%
GAATCAAGGGGAATAATTGG+AGG + chr3_1:80540258-80540277 Msa0379410:three_prime_UTR 40.0%
! TGCAAGGTACAAGCTACTTT+AGG + chr3_1:80540330-80540349 Msa0379410:three_prime_UTR 40.0%
! GCAAGGTACAAGCTACTTTA+GGG + chr3_1:80540331-80540350 Msa0379410:three_prime_UTR 40.0%
GGAACACCGATGATGCTAAT+GGG + chr3_1:80536121-80536140 Msa0379410:CDS 45.0%
GAACACCGATGATGCTAATG+GGG + chr3_1:80536122-80536141 Msa0379410:CDS 45.0%
AACACCGATGATGCTAATGG+GGG + chr3_1:80536123-80536142 Msa0379410:CDS 45.0%
TCATCCCCCATTAGCATCAT+CGG - chr3_1:80536130-80536149 None:intergenic 45.0%
GAATATGGCCATACTCGCTA+CGG + chr3_1:80536148-80536167 Msa0379410:CDS 45.0%
! CATCCCTCTTGGTAGCTTAT+TGG + chr3_1:80536238-80536257 Msa0379410:intron 45.0%
! TCCCTCTTGGTAGCTTATTG+GGG + chr3_1:80536240-80536259 Msa0379410:intron 45.0%
TCCCCAATAAGCTACCAAGA+GGG - chr3_1:80536244-80536263 None:intergenic 45.0%
ATCCCCAATAAGCTACCAAG+AGG - chr3_1:80536245-80536264 None:intergenic 45.0%
ATGCCGGTACTTTATCGCAT+TGG - chr3_1:80536339-80536358 None:intergenic 45.0%
TTGAGACAACATCGTGGTCA+TGG + chr3_1:80536658-80536677 Msa0379410:intron 45.0%
! ACATCGTGGTCATGGAGTTT+TGG + chr3_1:80536666-80536685 Msa0379410:intron 45.0%
! CATCGTGGTCATGGAGTTTT+GGG + chr3_1:80536667-80536686 Msa0379410:intron 45.0%
!!! TGTTAGTACCCTTTTAGGGC+CGG + chr3_1:80537050-80537069 Msa0379410:intron 45.0%
TATCAATTGGTCCGACCTAC+CGG + chr3_1:80537201-80537220 Msa0379410:intron 45.0%
CAAACATCCTCCATCTCTGA+CGG - chr3_1:80537251-80537270 None:intergenic 45.0%
GTCAGAGATGGAGGATGTTT+GGG + chr3_1:80537250-80537269 Msa0379410:intron 45.0%
AGATTTCACCGGAACAGATC+CGG + chr3_1:80537292-80537311 Msa0379410:intron 45.0%
!! AGGTTCAGAGGTATTGGTGA+TGG + chr3_1:80537491-80537510 Msa0379410:intron 45.0%
TAGCCATGGAAAATTCGGCA+AGG + chr3_1:80537592-80537611 Msa0379410:intron 45.0%
TGCAGCAAGTGCAAGAACAA+CGG + chr3_1:80537615-80537634 Msa0379410:intron 45.0%
!! TCAGTGGGAACTGTTTCTGA+TGG - chr3_1:80537776-80537795 None:intergenic 45.0%
GATTAACGTTTCCAGCTTCG+GGG + chr3_1:80537828-80537847 Msa0379410:intron 45.0%
!! CACCAGTTTTGGTAACACCA+TGG + chr3_1:80537953-80537972 Msa0379410:intron 45.0%
!! TCCCATGGTGTTACCAAAAC+TGG - chr3_1:80537958-80537977 None:intergenic 45.0%
! GGGTTGCTTATGGACTACAT+GGG + chr3_1:80538007-80538026 Msa0379410:intron 45.0%
GCTCTTCAAGCATTTGGATG+CGG + chr3_1:80538088-80538107 Msa0379410:intron 45.0%
CAATTGCACCCAAATGCTTG+AGG - chr3_1:80538148-80538167 None:intergenic 45.0%
GTCGTTGAAGACAGTGATGT+TGG - chr3_1:80538175-80538194 None:intergenic 45.0%
GCTCTCCCAGTAGCAAAAAA+TGG + chr3_1:80538228-80538247 Msa0379410:intron 45.0%
AACAACCTTGTCCTCAAGGT+TGG - chr3_1:80538269-80538288 None:intergenic 45.0%
!!! TGTTAGTACCCTTTTAGGGC+CGG + chr3_1:80537050-80537069 Msa0379410:intron 45.0%
TAGTGTGTTACGTCAGTGGA+AGG - chr3_1:80538784-80538803 None:intergenic 45.0%
! CTGATAGTGTGTTACGTCAG+TGG - chr3_1:80538788-80538807 None:intergenic 45.0%
AGGCTTCATGACAAAAGTGG+AGG + chr3_1:80538964-80538983 Msa0379410:intron 45.0%
! CTTTCTTTTTGTTGGGGGAG+TGG - chr3_1:80539043-80539062 None:intergenic 45.0%
CTCCCCCAACAAAAAGAAAG+TGG + chr3_1:80539043-80539062 Msa0379410:CDS 45.0%
! TCTATGGTTTGGGGAAGTAG+AGG - chr3_1:80539171-80539190 None:intergenic 45.0%
GGAGCAACATCTATGGTTTG+GGG - chr3_1:80539180-80539199 None:intergenic 45.0%
GGGAGCAACATCTATGGTTT+GGG - chr3_1:80539181-80539200 None:intergenic 45.0%
AGGGAGCAACATCTATGGTT+TGG - chr3_1:80539182-80539201 None:intergenic 45.0%
GTGATAGGGAGCAACATCTA+TGG - chr3_1:80539187-80539206 None:intergenic 45.0%
CGTAAATTGCTAGCAGACTG+TGG + chr3_1:80539229-80539248 Msa0379410:intron 45.0%
!! TAACGGATTCCACCACCTAT+CGG - chr3_1:80539269-80539288 None:intergenic 45.0%
!!! CTGCTATTTCTGGGTTTTCC+TGG + chr3_1:80539303-80539322 Msa0379410:intron 45.0%
!! ATTTCTGGGTTTTCCTGGTC+GGG + chr3_1:80539308-80539327 Msa0379410:intron 45.0%
!!! GGGTTTCCTCATGTTTTTGG+TGG + chr3_1:80539415-80539434 Msa0379410:intron 45.0%
GAATCAGGATCCTAGTATCG+GGG - chr3_1:80539526-80539545 None:intergenic 45.0%
! AATCAGGTAGTTTGGGGCAA+AGG - chr3_1:80539555-80539574 None:intergenic 45.0%
AAGGCCATTCTCACTCATTC+AGG - chr3_1:80539660-80539679 None:intergenic 45.0%
CTAATTGCTGAATTGGCAGC+TGG + chr3_1:80539706-80539725 Msa0379410:intron 45.0%
! GCTGGGAGGGTATATATTTG+TGG + chr3_1:80539724-80539743 Msa0379410:intron 45.0%
TGTACGTTTCTCCTATGCCT+GGG - chr3_1:80539970-80539989 None:intergenic 45.0%
ACCATACTCCTCCATTCTTC+TGG + chr3_1:80539997-80540016 Msa0379410:CDS 45.0%
TCCAGAAGAATGGAGGAGTA+TGG - chr3_1:80540001-80540020 None:intergenic 45.0%
ATACTCCTCCATTCTTCTGG+AGG + chr3_1:80540000-80540019 Msa0379410:CDS 45.0%
AAACTTGGCCTCCAGAAGAA+TGG - chr3_1:80540011-80540030 None:intergenic 45.0%
GTAGTTCACCACGAATCAAG+GGG + chr3_1:80540246-80540265 Msa0379410:three_prime_UTR 45.0%
AAGGGGAATAATTGGAGGAG+AGG + chr3_1:80540263-80540282 Msa0379410:three_prime_UTR 45.0%
AGGGGAATAATTGGAGGAGA+GGG + chr3_1:80540264-80540283 Msa0379410:three_prime_UTR 45.0%
! AGGTACAAGCTACTTTAGGG+CGG + chr3_1:80540334-80540353 Msa0379410:three_prime_UTR 45.0%
! TTAGCATCATCGGTGTTCCC+TGG - chr3_1:80536120-80536139 None:intergenic 50.0%
GGGAACACCGATGATGCTAA+TGG + chr3_1:80536120-80536139 Msa0379410:CDS 50.0%
CAAGGAAGGGCGATCACTTT+AGG + chr3_1:80536306-80536325 Msa0379410:CDS 50.0%
TCAGCAAAGTCTCTTGCTGC+CGG - chr3_1:80537072-80537091 None:intergenic 50.0%
TTTGCTGAGGAGCTTTGCTC+TGG + chr3_1:80537084-80537103 Msa0379410:intron 50.0%
CTTGCTCTCCGTCGATAATC+CGG - chr3_1:80537223-80537242 None:intergenic 50.0%
GCAAGTGTTACCGTCAGAGA+TGG + chr3_1:80537238-80537257 Msa0379410:intron 50.0%
AGTGTTACCGTCAGAGATGG+AGG + chr3_1:80537241-80537260 Msa0379410:intron 50.0%
CGTCAGAGATGGAGGATGTT+TGG + chr3_1:80537249-80537268 Msa0379410:intron 50.0%
ACTCTGGCGATAAGATGCAG+TGG + chr3_1:80537363-80537382 Msa0379410:intron 50.0%
CTCTGGCGATAAGATGCAGT+GGG + chr3_1:80537364-80537383 Msa0379410:intron 50.0%
!! GCAGTGGGCTTTTATGAGCA+TGG + chr3_1:80537379-80537398 Msa0379410:intron 50.0%
! GTGGGCTTTTATGAGCATGG+AGG + chr3_1:80537382-80537401 Msa0379410:intron 50.0%
TTTCCCATGCGCTCATCAGA+AGG + chr3_1:80537471-80537490 Msa0379410:intron 50.0%
GAACCTTCTGATGAGCGCAT+GGG - chr3_1:80537477-80537496 None:intergenic 50.0%
TGAACCTTCTGATGAGCGCA+TGG - chr3_1:80537478-80537497 None:intergenic 50.0%
AAAGAGGGAACGGATAGCCA+TGG + chr3_1:80537578-80537597 Msa0379410:intron 50.0%
! GCACCTTGCCGAATTTTCCA+TGG - chr3_1:80537598-80537617 None:intergenic 50.0%
GCAGCAAGTGCAAGAACAAC+GGG + chr3_1:80537616-80537635 Msa0379410:intron 50.0%
CAGCAAGTGCAAGAACAACG+GGG + chr3_1:80537617-80537636 Msa0379410:intron 50.0%
CAGAGACATCGCAGAAGAAG+AGG + chr3_1:80537669-80537688 Msa0379410:intron 50.0%
GAGGATAGAACCCAACACGA+TGG + chr3_1:80537688-80537707 Msa0379410:intron 50.0%
GATAGAACCCAACACGATGG+AGG + chr3_1:80537691-80537710 Msa0379410:intron 50.0%
TGACTCTCCTCCATCGTGTT+GGG - chr3_1:80537701-80537720 None:intergenic 50.0%
TTGACTCTCCTCCATCGTGT+TGG - chr3_1:80537702-80537721 None:intergenic 50.0%
!! GGGAACTGTTTCTGATGGAG+CGG - chr3_1:80537771-80537790 None:intergenic 50.0%
! TTGGTAACACCATGGGATCC+CGG + chr3_1:80537961-80537980 Msa0379410:intron 50.0%
! TTGCATTTTCCGGGATCCCA+TGG - chr3_1:80537973-80537992 None:intergenic 50.0%
! GGGGTTGCTTATGGACTACA+TGG + chr3_1:80538006-80538025 Msa0379410:intron 50.0%
TTCTAGCGGTCGGTGATGAT+AGG + chr3_1:80538290-80538309 Msa0379410:intron 50.0%
TCAGCAAAGTCTCTTGCTGC+CGG - chr3_1:80537072-80537091 None:intergenic 50.0%
TTTGCTGAGGAGCTTTGCTC+TGG + chr3_1:80537084-80537103 Msa0379410:intron 50.0%
ATTCCAATCGGCATGGAACG+CGG - chr3_1:80539209-80539228 None:intergenic 50.0%
! GGGGGGTTTCCTCATGTTTT+TGG + chr3_1:80539412-80539431 Msa0379410:intron 50.0%
! AGGATCCTAGTATCGGGGAA+GGG - chr3_1:80539521-80539540 None:intergenic 50.0%
GGGCAAAGGTAGTCAGAATC+AGG - chr3_1:80539541-80539560 None:intergenic 50.0%
CTGGCCTGAATGAGTGAGAA+TGG + chr3_1:80539653-80539672 Msa0379410:intron 50.0%
CTGTACGTTTCTCCTATGCC+TGG - chr3_1:80539971-80539990 None:intergenic 50.0%
TGGTGCAGGGCTTATATGCA+AGG + chr3_1:80540314-80540333 Msa0379410:three_prime_UTR 50.0%
TCTTGCTGCCGGCCCTAAAA+GGG - chr3_1:80537061-80537080 None:intergenic 55.0%
GGCAGCAAGAGACTTTGCTG+AGG + chr3_1:80537071-80537090 Msa0379410:intron 55.0%
CCGTCGATAATCCGGTAGGT+CGG - chr3_1:80537215-80537234 None:intergenic 55.0%
CCGACCTACCGGATTATCGA+CGG + chr3_1:80537212-80537231 Msa0379410:intron 55.0%
CTCTCCGTCGATAATCCGGT+AGG - chr3_1:80537219-80537238 None:intergenic 55.0%
GCGCTCATCAGAAGGTTCAG+AGG + chr3_1:80537479-80537498 Msa0379410:intron 55.0%
TCTTGCTGCCGGCCCTAAAA+GGG - chr3_1:80537061-80537080 None:intergenic 55.0%
GGCAGCAAGAGACTTTGCTG+AGG + chr3_1:80537071-80537090 Msa0379410:intron 55.0%
GAATCTCCGTGCTAGCCGAT+AGG + chr3_1:80539251-80539270 Msa0379410:intron 55.0%
TGTGACCCTTCCCCGATACT+AGG + chr3_1:80539513-80539532 Msa0379410:intron 55.0%
! CAGGATCCTAGTATCGGGGA+AGG - chr3_1:80539522-80539541 None:intergenic 55.0%
TTGCTGAATTGGCAGCTGGG+AGG + chr3_1:80539710-80539729 Msa0379410:intron 55.0%
TGCTGAATTGGCAGCTGGGA+GGG + chr3_1:80539711-80539730 Msa0379410:intron 55.0%
CCATCGAGGACGATGTCATC+AGG - chr3_1:80539944-80539963 None:intergenic 55.0%
CCTGATGACATCGTCCTCGA+TGG + chr3_1:80539941-80539960 Msa0379410:CDS 55.0%
CTTGGCCTCCAGAAGAATGG+AGG - chr3_1:80540008-80540027 None:intergenic 55.0%
TAGGGCGGTCCTACGAAGTT+TGG + chr3_1:80540349-80540368 Msa0379410:three_prime_UTR 55.0%
CTCTTGCTGCCGGCCCTAAA+AGG - chr3_1:80537062-80537081 None:intergenic 60.0%
GCTCTTACGATCCACGCAGC+CGG - chr3_1:80537314-80537333 None:intergenic 60.0%
AAGAACAACGGGGACGCACG+AGG + chr3_1:80537627-80537646 Msa0379410:intron 60.0%
AGAACAACGGGGACGCACGA+GGG + chr3_1:80537628-80537647 Msa0379410:intron 60.0%
CTCTTGCTGCCGGCCCTAAA+AGG - chr3_1:80537062-80537081 None:intergenic 60.0%
CGGCATGGAACGCGGTGATA+GGG - chr3_1:80539201-80539220 None:intergenic 60.0%
TCGGCATGGAACGCGGTGAT+AGG - chr3_1:80539202-80539221 None:intergenic 60.0%
TCACCGCGTTCCATGCCGAT+TGG + chr3_1:80539203-80539222 Msa0379410:intron 60.0%
TCTCCGTGCTAGCCGATAGG+TGG + chr3_1:80539254-80539273 Msa0379410:intron 60.0%
! CCACCACCTATCGGCTAGCA+CGG - chr3_1:80539260-80539279 None:intergenic 60.0%
CCACGCAGCCGGATCTGTTC+CGG - chr3_1:80537303-80537322 None:intergenic 65.0%
TGGGGGTTTGTCCCCGAAGC+TGG - chr3_1:80537842-80537861 None:intergenic 65.0%
CCGTGCTAGCCGATAGGTGG+TGG + chr3_1:80539257-80539276 Msa0379410:intron 65.0%
CAAGCTCGCGTAACCCGACC+AGG - chr3_1:80539324-80539343 None:intergenic 65.0%
ATCGTCCTCGATGGCGTCCC+AGG + chr3_1:80539950-80539969 Msa0379410:CDS 65.0%
CTATGCCTGGGACGCCATCG+AGG - chr3_1:80539958-80539977 None:intergenic 65.0%
CTCGATGGCGTCCCAGGCAT+AGG + chr3_1:80539956-80539975 Msa0379410:CDS 65.0%
CCGGAACAGATCCGGCTGCG+TGG + chr3_1:80537300-80537319 Msa0379410:intron 70.0%
ACAACGGGGACGCACGAGGG+AGG + chr3_1:80537631-80537650 Msa0379410:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 80536109 80540495 80536109 ID=Msa0379410;Name=Msa0379410
chr3_1 mRNA 80536109 80540495 80536109 ID=Msa0379410-mRNA-1;Parent=Msa0379410;Name=Msa0379410-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.8|1|0.5|0.6|5|462|166
chr3_1 exon 80536109 80536225 80536109 ID=Msa0379410-mRNA-1:exon:20108;Parent=Msa0379410-mRNA-1
chr3_1 exon 80536299 80536397 80536299 ID=Msa0379410-mRNA-1:exon:20109;Parent=Msa0379410-mRNA-1
chr3_1 exon 80536507 80536568 80536507 ID=Msa0379410-mRNA-1:exon:20110;Parent=Msa0379410-mRNA-1
chr3_1 exon 80538966 80539074 80538966 ID=Msa0379410-mRNA-1:exon:20111;Parent=Msa0379410-mRNA-1
chr3_1 exon 80539920 80540495 80539920 ID=Msa0379410-mRNA-1:exon:20112;Parent=Msa0379410-mRNA-1
chr3_1 CDS 80536109 80536225 80536109 ID=Msa0379410-mRNA-1:cds;Parent=Msa0379410-mRNA-1
chr3_1 CDS 80536299 80536397 80536299 ID=Msa0379410-mRNA-1:cds;Parent=Msa0379410-mRNA-1
chr3_1 CDS 80536507 80536568 80536507 ID=Msa0379410-mRNA-1:cds;Parent=Msa0379410-mRNA-1
chr3_1 CDS 80538966 80539074 80538966 ID=Msa0379410-mRNA-1:cds;Parent=Msa0379410-mRNA-1
chr3_1 CDS 80539920 80540033 80539920 ID=Msa0379410-mRNA-1:cds;Parent=Msa0379410-mRNA-1
chr3_1 three_prime_UTR 80540034 80540495 80540034 ID=Msa0379410-mRNA-1:three_prime_utr;Parent=Msa0379410-mRNA-1
Gene Sequence

>Msa0379410

ATGATTGACCAGGGAACACCGATGATGCTAATGGGGGATGAATATGGCCATACTCGCTACGGAAATAACAATAGCTATGGGCATGATTCTGCCATTAATTTTTTCTTGTGGGATCAGTTGGATGCAAGGAAGGGCGATCACTTTAGGTTTTTCTCCAATGCGATAAAGTACCGGCATGCACATAAAACATTGAGTCATGAAAATTTTCTCAGTGAGAATGAAATAACATGGCATGAAGACAATTGGGACAATTACGAAAGCAAATTTCTTGCATTTACGCTTCATGACAAAAGTGGAGGAGATATCTATTTAGCTTTTAATGCTCATGACTACTTTTTGAAAGCTCTTCTGCCCACTCCCCCAACAAAAAGAAAGTGGTTTCGTGTGGTGGACACTAATCTTCAATCTCCTGATGACATCGTCCTCGATGGCGTCCCAGGCATAGGAGAAACGTACAGTATAGCACCATACTCCTCCATTCTTCTGGAGGCCAAGTTTTGA

Protein sequence

>Msa0379410

MIDQGTPMMLMGDEYGHTRYGNNNSYGHDSAINFFLWDQLDARKGDHFRFFSNAIKYRHAHKTLSHENFLSENEITWHEDNWDNYESKFLAFTLHDKSGGDIYLAFNAHDYFLKALLPTPPTKRKWFRVVDTNLQSPDDIVLDGVPGIGETYSIAPYSSILLEAKF*