AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1380430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1380430 MtrunA17_Chr7g0267721 93.085 188 9 2 1 185 1 187 2.13e-126 353
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1380430 AT2G35900.1 46.078 204 79 7 1 185 1 192 9.05e-53 167
Msa1380430 AT2G35900.2 41.353 133 61 5 59 185 26 147 1.62e-23 91.3
Msa1380430 AT2G35900.3 41.353 133 61 5 59 185 26 147 1.62e-23 91.3

Find 66 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAACAAAACACACAAAATT+TGG 0.191025 tig0020342:+117578 Msa1380430:five_prime_UTR
ACTGAGAAACACCTTATTAA+AGG 0.248702 tig0020342:-119554 None:intergenic
AAATTTGGAAGCTAAGAAAA+TGG 0.261330 tig0020342:+117593 Msa1380430:exon
GTCGATGGATAAATAATATT+TGG 0.265015 tig0020342:+119733 Msa1380430:three_prime_UTR
GATTCCGTATCCTTGGATTT+AGG 0.265695 tig0020342:-119417 None:intergenic
TACAAGTATGCCCTTTAATA+AGG 0.310406 tig0020342:+119543 Msa1380430:three_prime_UTR
CGCAACCTCTTCGGTGGTCT+CGG 0.314056 tig0020342:+119255 Msa1380430:CDS
CTGAGATTTCACGACTTTCC+TGG 0.320318 tig0020342:-117679 None:intergenic
TATCTTTATGCCAGTTGCTT+AGG 0.364991 tig0020342:+119576 Msa1380430:three_prime_UTR
GATAACAACAACTCTTCTTC+AGG 0.370020 tig0020342:+117636 Msa1380430:CDS
CTAAGAAAATGGGTTGGGTT+TGG 0.371297 tig0020342:+117604 Msa1380430:exon
GGGATACCTATTGAAGATAA+TGG 0.379651 tig0020342:+119378 Msa1380430:CDS
AGAGGAGGGTCTGCCACATT+TGG 0.396459 tig0020342:+119159 Msa1380430:CDS
ATTTAGGATGAGTTTCTTGC+CGG 0.398851 tig0020342:-119401 None:intergenic
TTTGATTGCAGCACTTCAAC+AGG 0.402118 tig0020342:-119096 None:intergenic
CTGAGAAACACCTTATTAAA+GGG 0.416865 tig0020342:-119553 None:intergenic
AGTTTGCAATAACATCAAAA+AGG 0.435162 tig0020342:-119314 None:intergenic
ATCAGCTGATTCCGTATCCT+TGG 0.436734 tig0020342:-119424 None:intergenic
GGAAGCTAAGAAAATGGGTT+GGG 0.440868 tig0020342:+117599 Msa1380430:exon
AAAGGGTGGTTTCAATAACT+TGG 0.443116 tig0020342:-117500 None:intergenic
GTCATGGAGCGCAACCTCTT+CGG 0.456959 tig0020342:+119246 Msa1380430:CDS
TGCCGGCCATTATCTTCAAT+AGG 0.466167 tig0020342:-119384 None:intergenic
CATGGAATGTTCAACTTCCC+TGG 0.467653 tig0020342:+119204 Msa1380430:CDS
CATCTCTGCATCAAATATAG+AGG 0.468284 tig0020342:-119340 None:intergenic
AGAAAACAAACCTAAGCAAC+TGG 0.469061 tig0020342:-119586 None:intergenic
TTGAACCTGGAAAATTCATT+CGG 0.473945 tig0020342:+117718 Msa1380430:CDS
TAGGTATCCCTCGCCTCATA+CGG 0.477154 tig0020342:-119365 None:intergenic
TGTGTTAGATCACAAACATC+TGG 0.478025 tig0020342:+119518 Msa1380430:three_prime_UTR
ATCACCAGTGAGGTACTTAG+AGG 0.483893 tig0020342:+119141 Msa1380430:CDS
AATTTGGAAGCTAAGAAAAT+GGG 0.483977 tig0020342:+117594 Msa1380430:exon
TGATACTGATTTCTCTGCAT+TGG 0.487086 tig0020342:+119443 Msa1380430:CDS
ATGCAGAGATGCCCCGTATG+AGG 0.495867 tig0020342:+119352 Msa1380430:CDS
TGTTTGTGTTCCTCCTCACT+AGG 0.498721 tig0020342:-117543 None:intergenic
GTGGTTTCAATAACTTGGAC+AGG 0.508591 tig0020342:-117495 None:intergenic
GAGCTTCTCAAAACTTGCGC+TGG 0.511543 tig0020342:+117759 Msa1380430:CDS
TTAGCTAGTTTCTCTGTCGA+TGG 0.516081 tig0020342:+119718 Msa1380430:three_prime_UTR
TCAATATCACTTCGTAGCCC+AGG 0.516666 tig0020342:-119222 None:intergenic
TGGAAGCTAAGAAAATGGGT+TGG 0.519769 tig0020342:+117598 Msa1380430:exon
CCTGGTGGAGCATCGTTCAT+CGG 0.520580 tig0020342:-117661 None:intergenic
TGTGTTCCTCCTCACTAGGT+CGG 0.521804 tig0020342:-117539 None:intergenic
CCGATGAACGATGCTCCACC+AGG 0.527517 tig0020342:+117661 Msa1380430:CDS
TCATCCTAAATCCAAGGATA+CGG 0.528227 tig0020342:+119413 Msa1380430:CDS
AGGTATCCCTCGCCTCATAC+GGG 0.544190 tig0020342:-119364 None:intergenic
CCCTCCTCTAAGTACCTCAC+TGG 0.550025 tig0020342:-119145 None:intergenic
ATGGAATGTTCAACTTCCCT+GGG 0.553660 tig0020342:+119205 Msa1380430:CDS
CAGGGAAGTTGAACATTCCA+TGG 0.558704 tig0020342:-119203 None:intergenic
ACGAAGTGATATTGAAGTCA+TGG 0.559482 tig0020342:+119230 Msa1380430:CDS
TACCTATTGAAGATAATGGC+CGG 0.564553 tig0020342:+119382 Msa1380430:CDS
AGCTGATATGGCATGTATCG+AGG 0.569124 tig0020342:+119628 Msa1380430:three_prime_UTR
AGAAACTCATCCTAAATCCA+AGG 0.596218 tig0020342:+119407 Msa1380430:CDS
GCTTCATAACCGACCTAGTG+AGG 0.597788 tig0020342:+117530 Msa1380430:five_prime_UTR
AGATGCCCCGTATGAGGCGA+GGG 0.597898 tig0020342:+119358 Msa1380430:CDS
AAAACCGAAGAAGTTGAACC+TGG 0.597931 tig0020342:+117705 Msa1380430:CDS
GCTGATATGGCATGTATCGA+GGG 0.607958 tig0020342:+119629 Msa1380430:three_prime_UTR
CAATATCACTTCGTAGCCCA+GGG 0.608807 tig0020342:-119221 None:intergenic
ACCAGTGAGGTACTTAGAGG+AGG 0.611706 tig0020342:+119144 Msa1380430:CDS
ATCTCTGCATCAAATATAGA+GGG 0.614696 tig0020342:-119339 None:intergenic
ATGGAGCGCAACCTCTTCGG+TGG 0.620855 tig0020342:+119249 Msa1380430:CDS
CCAGTGAGGTACTTAGAGGA+GGG 0.628488 tig0020342:+119145 Msa1380430:CDS
AGATTTCACGACTTTCCTGG+TGG 0.634477 tig0020342:-117676 None:intergenic
CATAACCTGTAACCAAGTGT+AGG 0.641565 tig0020342:-119664 None:intergenic
AGCGACCGAGACCACCGAAG+AGG 0.648679 tig0020342:-119260 None:intergenic
GCAAATAGCTCATCAGACCA+TGG 0.656602 tig0020342:+119186 Msa1380430:CDS
TCATAACCGACCTAGTGAGG+AGG 0.685634 tig0020342:+117533 Msa1380430:five_prime_UTR
GCTATTTGCTGAGCCAAATG+TGG 0.697929 tig0020342:-119172 None:intergenic
AGAAGAAGATATCACCAGTG+AGG 0.746392 tig0020342:+119131 Msa1380430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCATACTATTTTATTTATT+AGG + tig0020342:117856-117875 Msa1380430:intron 10.0%
!!! TATTTTATTTATTAGGTATT+AGG + tig0020342:117863-117882 Msa1380430:intron 10.0%
!!! TTCATACTATTTTATTTATT+AGG + tig0020342:117856-117875 Msa1380430:intron 10.0%
!!! TATTTTATTTATTAGGTATT+AGG + tig0020342:117863-117882 Msa1380430:intron 10.0%
!! ATTCAAATTAAATCGTAAAA+AGG - tig0020342:118207-118226 None:intergenic 15.0%
!!! ATTTAATTTGAATGATCATT+TGG + tig0020342:118214-118233 Msa1380430:intron 15.0%
!! TATGATACTTTATATTTGAA+TGG - tig0020342:118653-118672 None:intergenic 15.0%
!!! TTCAATTGATTTCAATTTTT+AGG + tig0020342:118827-118846 Msa1380430:intron 15.0%
!!! ATTTCAATTTTTAGGTATTA+GGG + tig0020342:118835-118854 Msa1380430:intron 15.0%
!!! TATTGGTTGATTATATTTTT+TGG + tig0020342:118943-118962 Msa1380430:intron 15.0%
!! ATTCAAATTAAATCGTAAAA+AGG - tig0020342:118207-118226 None:intergenic 15.0%
!!! ATTTAATTTGAATGATCATT+TGG + tig0020342:118214-118233 Msa1380430:intron 15.0%
!! TATGATACTTTATATTTGAA+TGG - tig0020342:118653-118672 None:intergenic 15.0%
!!! TTCAATTGATTTCAATTTTT+AGG + tig0020342:118827-118846 Msa1380430:intron 15.0%
!!! ATTTCAATTTTTAGGTATTA+GGG + tig0020342:118835-118854 Msa1380430:intron 15.0%
!!! TATTGGTTGATTATATTTTT+TGG + tig0020342:118943-118962 Msa1380430:intron 15.0%
!! GTTATGAAGCTTAAAAAAAA+GGG - tig0020342:117520-117539 None:intergenic 20.0%
!! AAAATAGTATGAAGCAAATT+GGG - tig0020342:117849-117868 None:intergenic 20.0%
!! TAAAATAGTATGAAGCAAAT+TGG - tig0020342:117850-117869 None:intergenic 20.0%
!! ATTTATTAGGTATTAGGATT+AGG + tig0020342:117869-117888 Msa1380430:intron 20.0%
!!! GGGATTTTTAATCAATTTTT+TGG + tig0020342:117897-117916 Msa1380430:intron 20.0%
!! TATAGTATAGGATGTTATAA+TGG - tig0020342:118067-118086 None:intergenic 20.0%
!!! GATTTCAATTTTTAGGTATT+AGG + tig0020342:118834-118853 Msa1380430:intron 20.0%
!! TGAATATCAAGATAATTTGA+TGG - tig0020342:118895-118914 None:intergenic 20.0%
!!! AAAAAGTTTTTGTGCTTTAT+TGG + tig0020342:118926-118945 Msa1380430:intron 20.0%
!! GTTATGAAGCTTAAAAAAAA+GGG - tig0020342:117520-117539 None:intergenic 20.0%
!! AAAATAGTATGAAGCAAATT+GGG - tig0020342:117849-117868 None:intergenic 20.0%
!! TAAAATAGTATGAAGCAAAT+TGG - tig0020342:117850-117869 None:intergenic 20.0%
!! ATTTATTAGGTATTAGGATT+AGG + tig0020342:117869-117888 Msa1380430:intron 20.0%
!!! GGGATTTTTAATCAATTTTT+TGG + tig0020342:117897-117916 Msa1380430:intron 20.0%
!! TATAGTATAGGATGTTATAA+TGG - tig0020342:118067-118086 None:intergenic 20.0%
!!! GATTTCAATTTTTAGGTATT+AGG + tig0020342:118834-118853 Msa1380430:intron 20.0%
!! TGAATATCAAGATAATTTGA+TGG - tig0020342:118895-118914 None:intergenic 20.0%
!!! AAAAAGTTTTTGTGCTTTAT+TGG + tig0020342:118926-118945 Msa1380430:intron 20.0%
! GGTTATGAAGCTTAAAAAAA+AGG - tig0020342:117521-117540 None:intergenic 25.0%
! AAATTTGGAAGCTAAGAAAA+TGG + tig0020342:117593-117612 Msa1380430:exon 25.0%
! AATTTGGAAGCTAAGAAAAT+GGG + tig0020342:117594-117613 Msa1380430:exon 25.0%
! AATAAAGAAGAAGAAGAAGA+AGG - tig0020342:117803-117822 None:intergenic 25.0%
! GACTTCATAAAGTATAGTAT+AGG - tig0020342:118079-118098 None:intergenic 25.0%
! TATACTTTATGAAGTCTCTA+AGG + tig0020342:118083-118102 Msa1380430:intron 25.0%
!! AAACATTGTCAATTTTGTCT+TGG - tig0020342:118319-118338 None:intergenic 25.0%
!!! TTTAGTGACTTGTTTTGTAT+AGG + tig0020342:118553-118572 Msa1380430:intron 25.0%
!!! TTAGTGACTTGTTTTGTATA+GGG + tig0020342:118554-118573 Msa1380430:intron 25.0%
! AAGTATCATAATATGACATG+TGG + tig0020342:118663-118682 Msa1380430:intron 25.0%
! ATTGAAATCAATTGCAGTAT+TGG - tig0020342:118727-118746 None:intergenic 25.0%
! TATCTTGATGTTGATACAAA+TGG + tig0020342:118804-118823 Msa1380430:intron 25.0%
!!! TTTTTGGTCATTATGTTCTT+CGG + tig0020342:118959-118978 Msa1380430:intron 25.0%
! TCTAATTTCATCTTTACCTT+TGG + tig0020342:119060-119079 Msa1380430:intron 25.0%
! AGTTTGCAATAACATCAAAA+AGG - tig0020342:119317-119336 None:intergenic 25.0%
! ATTAAAAACTCTAGCTGATA+TGG + tig0020342:119616-119635 Msa1380430:three_prime_UTR 25.0%
!! TTTTATCTTTTACCTACACT+TGG + tig0020342:119652-119671 Msa1380430:three_prime_UTR 25.0%
! GTCGATGGATAAATAATATT+TGG + tig0020342:119733-119752 Msa1380430:three_prime_UTR 25.0%
! GGTTATGAAGCTTAAAAAAA+AGG - tig0020342:117521-117540 None:intergenic 25.0%
! AAATTTGGAAGCTAAGAAAA+TGG + tig0020342:117593-117612 Msa1380430:exon 25.0%
! AATTTGGAAGCTAAGAAAAT+GGG + tig0020342:117594-117613 Msa1380430:exon 25.0%
! AATAAAGAAGAAGAAGAAGA+AGG - tig0020342:117803-117822 None:intergenic 25.0%
! GACTTCATAAAGTATAGTAT+AGG - tig0020342:118079-118098 None:intergenic 25.0%
! TATACTTTATGAAGTCTCTA+AGG + tig0020342:118083-118102 Msa1380430:intron 25.0%
!! AAACATTGTCAATTTTGTCT+TGG - tig0020342:118319-118338 None:intergenic 25.0%
!!! TTTAGTGACTTGTTTTGTAT+AGG + tig0020342:118553-118572 Msa1380430:intron 25.0%
!!! TTAGTGACTTGTTTTGTATA+GGG + tig0020342:118554-118573 Msa1380430:intron 25.0%
! AAGTATCATAATATGACATG+TGG + tig0020342:118663-118682 Msa1380430:intron 25.0%
! ATTGAAATCAATTGCAGTAT+TGG - tig0020342:118727-118746 None:intergenic 25.0%
! TATCTTGATGTTGATACAAA+TGG + tig0020342:118804-118823 Msa1380430:intron 25.0%
!!! TTTTTGGTCATTATGTTCTT+CGG + tig0020342:118959-118978 Msa1380430:intron 25.0%
! TCTAATTTCATCTTTACCTT+TGG + tig0020342:119060-119079 Msa1380430:intron 25.0%
! AGTTTGCAATAACATCAAAA+AGG - tig0020342:119317-119336 None:intergenic 25.0%
! ATTAAAAACTCTAGCTGATA+TGG + tig0020342:119616-119635 Msa1380430:three_prime_UTR 25.0%
!! TTTTATCTTTTACCTACACT+TGG + tig0020342:119652-119671 Msa1380430:three_prime_UTR 25.0%
! GTCGATGGATAAATAATATT+TGG + tig0020342:119733-119752 Msa1380430:three_prime_UTR 25.0%
ATGAAGCTTAAAAAAAAGGG+TGG - tig0020342:117517-117536 None:intergenic 30.0%
CGAACAAAACACACAAAATT+TGG + tig0020342:117578-117597 Msa1380430:five_prime_UTR 30.0%
TTGAACCTGGAAAATTCATT+CGG + tig0020342:117718-117737 Msa1380430:CDS 30.0%
AGCAAATTGGGAATAGAATA+GGG - tig0020342:117837-117856 None:intergenic 30.0%
AAGCAAATTGGGAATAGAAT+AGG - tig0020342:117838-117857 None:intergenic 30.0%
AAATATGCTAAAACCACCAA+AGG + tig0020342:118153-118172 Msa1380430:intron 30.0%
GAATGATCATTTGGATCAAT+TGG + tig0020342:118223-118242 Msa1380430:intron 30.0%
TCATTTGGATCAATTGGAAA+TGG + tig0020342:118229-118248 Msa1380430:intron 30.0%
ACTTTACCTGAAAAGAACAT+TGG + tig0020342:118401-118420 Msa1380430:intron 30.0%
! ATTGTACCAATGTTCTTTTC+AGG - tig0020342:118410-118429 None:intergenic 30.0%
TTTCGAAAATCAGGTTTCTT+GGG - tig0020342:118531-118550 None:intergenic 30.0%
!! TTTGTATAGGGTTGTTTTAC+AGG + tig0020342:118566-118585 Msa1380430:intron 30.0%
TCAACATCAAGATACTTTGA+TGG - tig0020342:118798-118817 None:intergenic 30.0%
! TTTTGGTCATTATGTTCTTC+GGG + tig0020342:118960-118979 Msa1380430:intron 30.0%
ATCTCTGCATCAAATATAGA+GGG - tig0020342:119342-119361 None:intergenic 30.0%
TACAAGTATGCCCTTTAATA+AGG + tig0020342:119543-119562 Msa1380430:three_prime_UTR 30.0%
CTGAGAAACACCTTATTAAA+GGG - tig0020342:119556-119575 None:intergenic 30.0%
ACTGAGAAACACCTTATTAA+AGG - tig0020342:119557-119576 None:intergenic 30.0%
ATGAAGCTTAAAAAAAAGGG+TGG - tig0020342:117517-117536 None:intergenic 30.0%
CGAACAAAACACACAAAATT+TGG + tig0020342:117578-117597 Msa1380430:five_prime_UTR 30.0%
TTGAACCTGGAAAATTCATT+CGG + tig0020342:117718-117737 Msa1380430:CDS 30.0%
AGCAAATTGGGAATAGAATA+GGG - tig0020342:117837-117856 None:intergenic 30.0%
AAGCAAATTGGGAATAGAAT+AGG - tig0020342:117838-117857 None:intergenic 30.0%
AAATATGCTAAAACCACCAA+AGG + tig0020342:118153-118172 Msa1380430:intron 30.0%
GAATGATCATTTGGATCAAT+TGG + tig0020342:118223-118242 Msa1380430:intron 30.0%
TCATTTGGATCAATTGGAAA+TGG + tig0020342:118229-118248 Msa1380430:intron 30.0%
ACTTTACCTGAAAAGAACAT+TGG + tig0020342:118401-118420 Msa1380430:intron 30.0%
! ATTGTACCAATGTTCTTTTC+AGG - tig0020342:118410-118429 None:intergenic 30.0%
TTTCGAAAATCAGGTTTCTT+GGG - tig0020342:118531-118550 None:intergenic 30.0%
!! TTTGTATAGGGTTGTTTTAC+AGG + tig0020342:118566-118585 Msa1380430:intron 30.0%
TCAACATCAAGATACTTTGA+TGG - tig0020342:118798-118817 None:intergenic 30.0%
! TTTTGGTCATTATGTTCTTC+GGG + tig0020342:118960-118979 Msa1380430:intron 30.0%
ATCTCTGCATCAAATATAGA+GGG - tig0020342:119342-119361 None:intergenic 30.0%
TACAAGTATGCCCTTTAATA+AGG + tig0020342:119543-119562 Msa1380430:three_prime_UTR 30.0%
CTGAGAAACACCTTATTAAA+GGG - tig0020342:119556-119575 None:intergenic 30.0%
ACTGAGAAACACCTTATTAA+AGG - tig0020342:119557-119576 None:intergenic 30.0%
AAAGGGTGGTTTCAATAACT+TGG - tig0020342:117503-117522 None:intergenic 35.0%
GATAACAACAACTCTTCTTC+AGG + tig0020342:117636-117655 Msa1380430:CDS 35.0%
! TTTTCCAGGTTCAACTTCTT+CGG - tig0020342:117712-117731 None:intergenic 35.0%
! CATTTCCGAATGAATTTTCC+AGG - tig0020342:117726-117745 None:intergenic 35.0%
AGGTATTAGGATTAGGATGA+TGG + tig0020342:117876-117895 Msa1380430:intron 35.0%
GGTATTAGGATTAGGATGAT+GGG + tig0020342:117877-117896 Msa1380430:intron 35.0%
! TGATTTTGCAAAAGCTACAC+AGG - tig0020342:117984-118003 None:intergenic 35.0%
! ATTTTATTCTGCCAAACCGA+TGG + tig0020342:118007-118026 Msa1380430:intron 35.0%
TACAAATTTGAGCACACGTT+TGG - tig0020342:118038-118057 None:intergenic 35.0%
AAACCACCAAAGGTTTCATT+TGG + tig0020342:118163-118182 Msa1380430:intron 35.0%
AGCATTAAGGATCAGAAAGT+CGG - tig0020342:118291-118310 None:intergenic 35.0%
CTTTCGAAAATCAGGTTTCT+TGG - tig0020342:118532-118551 None:intergenic 35.0%
CACTAAAGCTTTCGAAAATC+AGG - tig0020342:118540-118559 None:intergenic 35.0%
TGTTCTATTTGTGTAGTGTG+TGG + tig0020342:118690-118709 Msa1380430:intron 35.0%
GTTCTATTTGTGTAGTGTGT+GGG + tig0020342:118691-118710 Msa1380430:intron 35.0%
!! AAATCAATTGCAGTATTGGC+AGG - tig0020342:118723-118742 None:intergenic 35.0%
GATGAAACAGGTACACAAAA+AGG - tig0020342:119010-119029 None:intergenic 35.0%
TTACCTTTGGACTAATTCTC+AGG + tig0020342:119073-119092 Msa1380430:intron 35.0%
ACGAAGTGATATTGAAGTCA+TGG + tig0020342:119230-119249 Msa1380430:CDS 35.0%
GCAGCTGAAGAAATGAAAAA+TGG + tig0020342:119291-119310 Msa1380430:CDS 35.0%
CATCTCTGCATCAAATATAG+AGG - tig0020342:119343-119362 None:intergenic 35.0%
GGGATACCTATTGAAGATAA+TGG + tig0020342:119378-119397 Msa1380430:CDS 35.0%
! TACCTATTGAAGATAATGGC+CGG + tig0020342:119382-119401 Msa1380430:CDS 35.0%
! ATTTAGGATGAGTTTCTTGC+CGG - tig0020342:119404-119423 None:intergenic 35.0%
AGAAACTCATCCTAAATCCA+AGG + tig0020342:119407-119426 Msa1380430:CDS 35.0%
TCATCCTAAATCCAAGGATA+CGG + tig0020342:119413-119432 Msa1380430:CDS 35.0%
!! TGATACTGATTTCTCTGCAT+TGG + tig0020342:119443-119462 Msa1380430:CDS 35.0%
TGTGTTAGATCACAAACATC+TGG + tig0020342:119518-119537 Msa1380430:three_prime_UTR 35.0%
TATCTTTATGCCAGTTGCTT+AGG + tig0020342:119576-119595 Msa1380430:three_prime_UTR 35.0%
AGAAAACAAACCTAAGCAAC+TGG - tig0020342:119589-119608 None:intergenic 35.0%
! TTTTACCTACACTTGGTTAC+AGG + tig0020342:119659-119678 Msa1380430:three_prime_UTR 35.0%
AAAGGGTGGTTTCAATAACT+TGG - tig0020342:117503-117522 None:intergenic 35.0%
GATAACAACAACTCTTCTTC+AGG + tig0020342:117636-117655 Msa1380430:CDS 35.0%
! TTTTCCAGGTTCAACTTCTT+CGG - tig0020342:117712-117731 None:intergenic 35.0%
! CATTTCCGAATGAATTTTCC+AGG - tig0020342:117726-117745 None:intergenic 35.0%
AGGTATTAGGATTAGGATGA+TGG + tig0020342:117876-117895 Msa1380430:intron 35.0%
GGTATTAGGATTAGGATGAT+GGG + tig0020342:117877-117896 Msa1380430:intron 35.0%
! TGATTTTGCAAAAGCTACAC+AGG - tig0020342:117984-118003 None:intergenic 35.0%
! ATTTTATTCTGCCAAACCGA+TGG + tig0020342:118007-118026 Msa1380430:intron 35.0%
TACAAATTTGAGCACACGTT+TGG - tig0020342:118038-118057 None:intergenic 35.0%
AAACCACCAAAGGTTTCATT+TGG + tig0020342:118163-118182 Msa1380430:intron 35.0%
AGCATTAAGGATCAGAAAGT+CGG - tig0020342:118291-118310 None:intergenic 35.0%
CTTTCGAAAATCAGGTTTCT+TGG - tig0020342:118532-118551 None:intergenic 35.0%
CACTAAAGCTTTCGAAAATC+AGG - tig0020342:118540-118559 None:intergenic 35.0%
TGTTCTATTTGTGTAGTGTG+TGG + tig0020342:118690-118709 Msa1380430:intron 35.0%
GTTCTATTTGTGTAGTGTGT+GGG + tig0020342:118691-118710 Msa1380430:intron 35.0%
!! AAATCAATTGCAGTATTGGC+AGG - tig0020342:118723-118742 None:intergenic 35.0%
GATGAAACAGGTACACAAAA+AGG - tig0020342:119010-119029 None:intergenic 35.0%
TTACCTTTGGACTAATTCTC+AGG + tig0020342:119073-119092 Msa1380430:intron 35.0%
ACGAAGTGATATTGAAGTCA+TGG + tig0020342:119230-119249 Msa1380430:CDS 35.0%
GCAGCTGAAGAAATGAAAAA+TGG + tig0020342:119291-119310 Msa1380430:CDS 35.0%
CATCTCTGCATCAAATATAG+AGG - tig0020342:119343-119362 None:intergenic 35.0%
GGGATACCTATTGAAGATAA+TGG + tig0020342:119378-119397 Msa1380430:CDS 35.0%
! TACCTATTGAAGATAATGGC+CGG + tig0020342:119382-119401 Msa1380430:CDS 35.0%
! ATTTAGGATGAGTTTCTTGC+CGG - tig0020342:119404-119423 None:intergenic 35.0%
AGAAACTCATCCTAAATCCA+AGG + tig0020342:119407-119426 Msa1380430:CDS 35.0%
TCATCCTAAATCCAAGGATA+CGG + tig0020342:119413-119432 Msa1380430:CDS 35.0%
!! TGATACTGATTTCTCTGCAT+TGG + tig0020342:119443-119462 Msa1380430:CDS 35.0%
TGTGTTAGATCACAAACATC+TGG + tig0020342:119518-119537 Msa1380430:three_prime_UTR 35.0%
TATCTTTATGCCAGTTGCTT+AGG + tig0020342:119576-119595 Msa1380430:three_prime_UTR 35.0%
AGAAAACAAACCTAAGCAAC+TGG - tig0020342:119589-119608 None:intergenic 35.0%
! TTTTACCTACACTTGGTTAC+AGG + tig0020342:119659-119678 Msa1380430:three_prime_UTR 35.0%
GTGGTTTCAATAACTTGGAC+AGG - tig0020342:117498-117517 None:intergenic 40.0%
TGGAAGCTAAGAAAATGGGT+TGG + tig0020342:117598-117617 Msa1380430:exon 40.0%
! GGAAGCTAAGAAAATGGGTT+GGG + tig0020342:117599-117618 Msa1380430:exon 40.0%
!! CTAAGAAAATGGGTTGGGTT+TGG + tig0020342:117604-117623 Msa1380430:exon 40.0%
AAAACCGAAGAAGTTGAACC+TGG + tig0020342:117705-117724 Msa1380430:CDS 40.0%
ATCGCTCCAAATGAAACCTT+TGG - tig0020342:118172-118191 None:intergenic 40.0%
! TGTCTTGGCATAGAGCATTA+AGG - tig0020342:118304-118323 None:intergenic 40.0%
!! GGTTGTTTTACAGGCTTTGA+AGG + tig0020342:118575-118594 Msa1380430:intron 40.0%
TAGGTATTAGGGTTATGCAC+AGG + tig0020342:118846-118865 Msa1380430:intron 40.0%
TTTGATTGCAGCACTTCAAC+AGG - tig0020342:119099-119118 None:intergenic 40.0%
AGAAGAAGATATCACCAGTG+AGG + tig0020342:119131-119150 Msa1380430:CDS 40.0%
ATGGAATGTTCAACTTCCCT+GGG + tig0020342:119205-119224 Msa1380430:CDS 40.0%
GATTCCGTATCCTTGGATTT+AGG - tig0020342:119420-119439 None:intergenic 40.0%
CATAACCTGTAACCAAGTGT+AGG - tig0020342:119667-119686 None:intergenic 40.0%
! TTAGCTAGTTTCTCTGTCGA+TGG + tig0020342:119718-119737 Msa1380430:three_prime_UTR 40.0%
GTGGTTTCAATAACTTGGAC+AGG - tig0020342:117498-117517 None:intergenic 40.0%
TGGAAGCTAAGAAAATGGGT+TGG + tig0020342:117598-117617 Msa1380430:exon 40.0%
! GGAAGCTAAGAAAATGGGTT+GGG + tig0020342:117599-117618 Msa1380430:exon 40.0%
!! CTAAGAAAATGGGTTGGGTT+TGG + tig0020342:117604-117623 Msa1380430:exon 40.0%
AAAACCGAAGAAGTTGAACC+TGG + tig0020342:117705-117724 Msa1380430:CDS 40.0%
ATCGCTCCAAATGAAACCTT+TGG - tig0020342:118172-118191 None:intergenic 40.0%
! TGTCTTGGCATAGAGCATTA+AGG - tig0020342:118304-118323 None:intergenic 40.0%
!! GGTTGTTTTACAGGCTTTGA+AGG + tig0020342:118575-118594 Msa1380430:intron 40.0%
TAGGTATTAGGGTTATGCAC+AGG + tig0020342:118846-118865 Msa1380430:intron 40.0%
TTTGATTGCAGCACTTCAAC+AGG - tig0020342:119099-119118 None:intergenic 40.0%
AGAAGAAGATATCACCAGTG+AGG + tig0020342:119131-119150 Msa1380430:CDS 40.0%
ATGGAATGTTCAACTTCCCT+GGG + tig0020342:119205-119224 Msa1380430:CDS 40.0%
GATTCCGTATCCTTGGATTT+AGG - tig0020342:119420-119439 None:intergenic 40.0%
CATAACCTGTAACCAAGTGT+AGG - tig0020342:119667-119686 None:intergenic 40.0%
! TTAGCTAGTTTCTCTGTCGA+TGG + tig0020342:119718-119737 Msa1380430:three_prime_UTR 40.0%
TGTTTGTGTTCCTCCTCACT+AGG - tig0020342:117546-117565 None:intergenic 45.0%
AGATTTCACGACTTTCCTGG+TGG - tig0020342:117679-117698 None:intergenic 45.0%
CTGAGATTTCACGACTTTCC+TGG - tig0020342:117682-117701 None:intergenic 45.0%
!! GTTTGGATTAGCCATCGGTT+TGG - tig0020342:118021-118040 None:intergenic 45.0%
!! CACACGTTTGGATTAGCCAT+CGG - tig0020342:118026-118045 None:intergenic 45.0%
GCTCCAAATGAAACCTTTGG+TGG - tig0020342:118169-118188 None:intergenic 45.0%
! GTTGTCGTTTGCAACATAGC+AGG + tig0020342:118430-118449 Msa1380430:intron 45.0%
GCAACATAGCAGGAAGAGAA+TGG + tig0020342:118440-118459 Msa1380430:intron 45.0%
CATGTACATGCACAAGTGAC+AGG - tig0020342:118468-118487 None:intergenic 45.0%
CACTTGTGCATGTACATGTG+TGG + tig0020342:118470-118489 Msa1380430:intron 45.0%
!! GCACAAGTAGCACCACTTTT+TGG + tig0020342:118765-118784 Msa1380430:intron 45.0%
! GATGGAGCACTTCCAAAAAG+TGG - tig0020342:118780-118799 None:intergenic 45.0%
TTCAGTCGCATTTGCAGAGA+GGG - tig0020342:119038-119057 None:intergenic 45.0%
TTTCAGTCGCATTTGCAGAG+AGG - tig0020342:119039-119058 None:intergenic 45.0%
AGGCCTGAGAATTAGTCCAA+AGG - tig0020342:119079-119098 None:intergenic 45.0%
! ATCACCAGTGAGGTACTTAG+AGG + tig0020342:119141-119160 Msa1380430:CDS 45.0%
! GCTATTTGCTGAGCCAAATG+TGG - tig0020342:119175-119194 None:intergenic 45.0%
GCAAATAGCTCATCAGACCA+TGG + tig0020342:119186-119205 Msa1380430:CDS 45.0%
CAGGGAAGTTGAACATTCCA+TGG - tig0020342:119206-119225 None:intergenic 45.0%
CATGGAATGTTCAACTTCCC+TGG + tig0020342:119204-119223 Msa1380430:CDS 45.0%
CAATATCACTTCGTAGCCCA+GGG - tig0020342:119224-119243 None:intergenic 45.0%
TCAATATCACTTCGTAGCCC+AGG - tig0020342:119225-119244 None:intergenic 45.0%
TGCCGGCCATTATCTTCAAT+AGG - tig0020342:119387-119406 None:intergenic 45.0%
! ATCAGCTGATTCCGTATCCT+TGG - tig0020342:119427-119446 None:intergenic 45.0%
AGCTGATATGGCATGTATCG+AGG + tig0020342:119628-119647 Msa1380430:three_prime_UTR 45.0%
GCTGATATGGCATGTATCGA+GGG + tig0020342:119629-119648 Msa1380430:three_prime_UTR 45.0%
TGTTTGTGTTCCTCCTCACT+AGG - tig0020342:117546-117565 None:intergenic 45.0%
AGATTTCACGACTTTCCTGG+TGG - tig0020342:117679-117698 None:intergenic 45.0%
CTGAGATTTCACGACTTTCC+TGG - tig0020342:117682-117701 None:intergenic 45.0%
!! GTTTGGATTAGCCATCGGTT+TGG - tig0020342:118021-118040 None:intergenic 45.0%
!! CACACGTTTGGATTAGCCAT+CGG - tig0020342:118026-118045 None:intergenic 45.0%
GCTCCAAATGAAACCTTTGG+TGG - tig0020342:118169-118188 None:intergenic 45.0%
! GTTGTCGTTTGCAACATAGC+AGG + tig0020342:118430-118449 Msa1380430:intron 45.0%
GCAACATAGCAGGAAGAGAA+TGG + tig0020342:118440-118459 Msa1380430:intron 45.0%
CATGTACATGCACAAGTGAC+AGG - tig0020342:118468-118487 None:intergenic 45.0%
CACTTGTGCATGTACATGTG+TGG + tig0020342:118470-118489 Msa1380430:intron 45.0%
!! GCACAAGTAGCACCACTTTT+TGG + tig0020342:118765-118784 Msa1380430:intron 45.0%
! GATGGAGCACTTCCAAAAAG+TGG - tig0020342:118780-118799 None:intergenic 45.0%
TTCAGTCGCATTTGCAGAGA+GGG - tig0020342:119038-119057 None:intergenic 45.0%
TTTCAGTCGCATTTGCAGAG+AGG - tig0020342:119039-119058 None:intergenic 45.0%
AGGCCTGAGAATTAGTCCAA+AGG - tig0020342:119079-119098 None:intergenic 45.0%
! ATCACCAGTGAGGTACTTAG+AGG + tig0020342:119141-119160 Msa1380430:CDS 45.0%
! GCTATTTGCTGAGCCAAATG+TGG - tig0020342:119175-119194 None:intergenic 45.0%
GCAAATAGCTCATCAGACCA+TGG + tig0020342:119186-119205 Msa1380430:CDS 45.0%
CAGGGAAGTTGAACATTCCA+TGG - tig0020342:119206-119225 None:intergenic 45.0%
CATGGAATGTTCAACTTCCC+TGG + tig0020342:119204-119223 Msa1380430:CDS 45.0%
CAATATCACTTCGTAGCCCA+GGG - tig0020342:119224-119243 None:intergenic 45.0%
TCAATATCACTTCGTAGCCC+AGG - tig0020342:119225-119244 None:intergenic 45.0%
TGCCGGCCATTATCTTCAAT+AGG - tig0020342:119387-119406 None:intergenic 45.0%
! ATCAGCTGATTCCGTATCCT+TGG - tig0020342:119427-119446 None:intergenic 45.0%
AGCTGATATGGCATGTATCG+AGG + tig0020342:119628-119647 Msa1380430:three_prime_UTR 45.0%
GCTGATATGGCATGTATCGA+GGG + tig0020342:119629-119648 Msa1380430:three_prime_UTR 45.0%
GCTTCATAACCGACCTAGTG+AGG + tig0020342:117530-117549 Msa1380430:five_prime_UTR 50.0%
TCATAACCGACCTAGTGAGG+AGG + tig0020342:117533-117552 Msa1380430:five_prime_UTR 50.0%
TGTGTTCCTCCTCACTAGGT+CGG - tig0020342:117542-117561 None:intergenic 50.0%
GAGCTTCTCAAAACTTGCGC+TGG + tig0020342:117759-117778 Msa1380430:CDS 50.0%
! AGTGAGTGTCGCTGCATGTT+GGG - tig0020342:118615-118634 None:intergenic 50.0%
! ACCAGTGAGGTACTTAGAGG+AGG + tig0020342:119144-119163 Msa1380430:CDS 50.0%
! CCAGTGAGGTACTTAGAGGA+GGG + tig0020342:119145-119164 Msa1380430:CDS 50.0%
TAGGTATCCCTCGCCTCATA+CGG - tig0020342:119368-119387 None:intergenic 50.0%
GCTTCATAACCGACCTAGTG+AGG + tig0020342:117530-117549 Msa1380430:five_prime_UTR 50.0%
TCATAACCGACCTAGTGAGG+AGG + tig0020342:117533-117552 Msa1380430:five_prime_UTR 50.0%
TGTGTTCCTCCTCACTAGGT+CGG - tig0020342:117542-117561 None:intergenic 50.0%
GAGCTTCTCAAAACTTGCGC+TGG + tig0020342:117759-117778 Msa1380430:CDS 50.0%
! AGTGAGTGTCGCTGCATGTT+GGG - tig0020342:118615-118634 None:intergenic 50.0%
! ACCAGTGAGGTACTTAGAGG+AGG + tig0020342:119144-119163 Msa1380430:CDS 50.0%
! CCAGTGAGGTACTTAGAGGA+GGG + tig0020342:119145-119164 Msa1380430:CDS 50.0%
TAGGTATCCCTCGCCTCATA+CGG - tig0020342:119368-119387 None:intergenic 50.0%
!! CCTGGTGGAGCATCGTTCAT+CGG - tig0020342:117664-117683 None:intergenic 55.0%
! CAGTGAGTGTCGCTGCATGT+TGG - tig0020342:118616-118635 None:intergenic 55.0%
GAGAGGGTGGGTGATGAAAC+AGG - tig0020342:119022-119041 None:intergenic 55.0%
GTCGCATTTGCAGAGAGGGT+GGG - tig0020342:119034-119053 None:intergenic 55.0%
AGTCGCATTTGCAGAGAGGG+TGG - tig0020342:119035-119054 None:intergenic 55.0%
CCCTCCTCTAAGTACCTCAC+TGG - tig0020342:119148-119167 None:intergenic 55.0%
AGAGGAGGGTCTGCCACATT+TGG + tig0020342:119159-119178 Msa1380430:CDS 55.0%
GTCATGGAGCGCAACCTCTT+CGG + tig0020342:119246-119265 Msa1380430:CDS 55.0%
ATGCAGAGATGCCCCGTATG+AGG + tig0020342:119352-119371 Msa1380430:CDS 55.0%
AGGTATCCCTCGCCTCATAC+GGG - tig0020342:119367-119386 None:intergenic 55.0%
!! CCTGGTGGAGCATCGTTCAT+CGG - tig0020342:117664-117683 None:intergenic 55.0%
! CAGTGAGTGTCGCTGCATGT+TGG - tig0020342:118616-118635 None:intergenic 55.0%
GAGAGGGTGGGTGATGAAAC+AGG - tig0020342:119022-119041 None:intergenic 55.0%
GTCGCATTTGCAGAGAGGGT+GGG - tig0020342:119034-119053 None:intergenic 55.0%
AGTCGCATTTGCAGAGAGGG+TGG - tig0020342:119035-119054 None:intergenic 55.0%
CCCTCCTCTAAGTACCTCAC+TGG - tig0020342:119148-119167 None:intergenic 55.0%
AGAGGAGGGTCTGCCACATT+TGG + tig0020342:119159-119178 Msa1380430:CDS 55.0%
GTCATGGAGCGCAACCTCTT+CGG + tig0020342:119246-119265 Msa1380430:CDS 55.0%
ATGCAGAGATGCCCCGTATG+AGG + tig0020342:119352-119371 Msa1380430:CDS 55.0%
AGGTATCCCTCGCCTCATAC+GGG - tig0020342:119367-119386 None:intergenic 55.0%
CCGATGAACGATGCTCCACC+AGG + tig0020342:117661-117680 Msa1380430:CDS 60.0%
ATGGAGCGCAACCTCTTCGG+TGG + tig0020342:119249-119268 Msa1380430:CDS 60.0%
CGCAACCTCTTCGGTGGTCT+CGG + tig0020342:119255-119274 Msa1380430:CDS 60.0%
AGATGCCCCGTATGAGGCGA+GGG + tig0020342:119358-119377 Msa1380430:CDS 60.0%
GGTATCCCTCGCCTCATACG+GGG - tig0020342:119366-119385 None:intergenic 60.0%
CCGATGAACGATGCTCCACC+AGG + tig0020342:117661-117680 Msa1380430:CDS 60.0%
ATGGAGCGCAACCTCTTCGG+TGG + tig0020342:119249-119268 Msa1380430:CDS 60.0%
CGCAACCTCTTCGGTGGTCT+CGG + tig0020342:119255-119274 Msa1380430:CDS 60.0%
AGATGCCCCGTATGAGGCGA+GGG + tig0020342:119358-119377 Msa1380430:CDS 60.0%
GGTATCCCTCGCCTCATACG+GGG - tig0020342:119366-119385 None:intergenic 60.0%
AGCGACCGAGACCACCGAAG+AGG - tig0020342:119263-119282 None:intergenic 65.0%
GAGATGCCCCGTATGAGGCG+AGG + tig0020342:119357-119376 Msa1380430:CDS 65.0%
AGCGACCGAGACCACCGAAG+AGG - tig0020342:119263-119282 None:intergenic 65.0%
GAGATGCCCCGTATGAGGCG+AGG + tig0020342:119357-119376 Msa1380430:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0020342 gene 117468 119756 117468 ID=Msa1380430;Name=Msa1380430
tig0020342 mRNA 117468 119756 117468 ID=Msa1380430-mRNA-1;Parent=Msa1380430;Name=Msa1380430-mRNA-1;_AED=0.01;_eAED=0.01;_QI=144|1|1|1|1|1|2|277|185
tig0020342 exon 117468 117784 117468 ID=Msa1380430-mRNA-1:exon:7065;Parent=Msa1380430-mRNA-1
tig0020342 exon 119095 119756 119095 ID=Msa1380430-mRNA-1:exon:7066;Parent=Msa1380430-mRNA-1
tig0020342 five_prime_UTR 117468 117611 117468 ID=Msa1380430-mRNA-1:five_prime_utr;Parent=Msa1380430-mRNA-1
tig0020342 CDS 117612 117784 117612 ID=Msa1380430-mRNA-1:cds;Parent=Msa1380430-mRNA-1
tig0020342 CDS 119095 119479 119095 ID=Msa1380430-mRNA-1:cds;Parent=Msa1380430-mRNA-1
tig0020342 three_prime_UTR 119480 119756 119480 ID=Msa1380430-mRNA-1:three_prime_utr;Parent=Msa1380430-mRNA-1
Gene Sequence

>Msa1380430

ATGGGTTGGGTTTGGAGCGACGACGATAACAACAACTCTTCTTCAGGTTCCGATGAACGATGCTCCACCAGGAAAGTCGTGAAATCTCAGTGCAAAACCGAAGAAGTTGAACCTGGAAAATTCATTCGGAAATGCGAGAAAACTGAAGAGCTTCTCAAAACTTGCGCTGGAAAGCCTGTTGAAGTGCTGCAATCAAACAAAGAGTACACAGAAGAAGATATCACCAGTGAGGTACTTAGAGGAGGGTCTGCCACATTTGGCTCAGCAAATAGCTCATCAGACCATGGAATGTTCAACTTCCCTGGGCTACGAAGTGATATTGAAGTCATGGAGCGCAACCTCTTCGGTGGTCTCGGTCGCTTCTTTGAAGCAGCTGAAGAAATGAAAAATGGCCTTTTTGATGTTATTGCAAACTCTCCCTCTATATTTGATGCAGAGATGCCCCGTATGAGGCGAGGGATACCTATTGAAGATAATGGCCGGCAAGAAACTCATCCTAAATCCAAGGATACGGAATCAGCTGATACTGATTTCTCTGCATTGGCTAAAGATGTTTAA
Protein sequence

>Msa1380430

MGWVWSDDDNNNSSSGSDERCSTRKVVKSQCKTEEVEPGKFIRKCEKTEELLKTCAGKPVEVLQSNKEYTEEDITSEVLRGGSATFGSANSSSDHGMFNFPGLRSDIEVMERNLFGGLGRFFEAAEEMKNGLFDVIANSPSIFDAEMPRMRRGIPIEDNGRQETHPKSKDTESADTDFSALAKDV*