AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0278580


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0278580 MtrunA17_Chr2g0291661 97.179 319 5 2 1 315 1 319 0.0 640
Msa0278580 MtrunA17_Chr4g0043501 49.689 322 126 10 1 315 1 293 9.48e-97 287
Msa0278580 MtrunA17_Chr2g0311981 40.162 371 161 15 1 315 1 366 4.31e-71 224
Msa0278580 MtrunA17_Chr8g0358261 37.801 291 147 7 57 314 20 309 9.95e-55 180
Msa0278580 MtrunA17_Chr5g0400041 31.863 204 117 4 123 315 143 335 1.73e-27 109
Msa0278580 MtrunA17_Chr3g0145641 35.955 178 88 5 126 302 18 170 5.44e-23 94.0
Msa0278580 MtrunA17_Chr1g0153261 30.481 187 129 1 118 304 145 330 7.03e-23 97.1
Msa0278580 MtrunA17_Chr4g0018631 27.358 212 130 3 101 302 2 199 1.08e-21 91.3
Msa0278580 MtrunA17_Chr4g0055201 31.604 212 131 4 110 315 129 332 7.05e-21 91.3
Msa0278580 MtrunA17_Chr4g0017891 26.087 184 116 4 124 307 78 241 1.45e-14 72.4
Msa0278580 MtrunA17_Chr2g0319361 26.042 192 126 5 112 302 64 240 2.89e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0278580 AT5G45100.1 46.296 324 134 10 1 315 1 293 1.14e-80 247
Msa0278580 AT4G19700.1 46.417 321 148 8 1 315 1 303 3.62e-79 243
Msa0278580 AT5G45100.2 47.535 284 122 8 41 315 1 266 9.02e-75 231
Msa0278580 AT3G12920.1 38.109 349 167 11 1 315 1 334 2.37e-63 204
Msa0278580 AT1G79110.3 47.748 222 91 4 115 315 115 332 4.82e-54 179
Msa0278580 AT1G79110.2 48.624 218 95 3 115 315 137 354 5.14e-54 180
Msa0278580 AT1G79110.1 47.964 221 95 4 115 315 137 357 7.87e-52 174
Msa0278580 AT1G45976.1 32.673 202 125 4 106 304 122 315 1.75e-28 112
Msa0278580 AT1G60610.2 30.841 214 140 2 105 312 126 337 1.51e-25 104
Msa0278580 AT1G60610.4 30.841 214 140 2 105 312 126 337 1.51e-25 104
Msa0278580 AT1G60610.1 30.841 214 140 2 105 312 126 337 1.51e-25 104
Msa0278580 AT1G60610.5 30.841 214 140 2 105 312 126 337 1.51e-25 104
Msa0278580 AT1G60610.3 30.841 214 140 2 105 312 126 337 1.51e-25 104
Msa0278580 AT1G10650.2 32.075 212 124 4 115 315 81 283 5.65e-24 99.4
Msa0278580 AT1G10650.1 32.075 212 124 4 115 315 137 339 1.41e-23 99.4
Msa0278580 AT4G35070.2 30.601 183 121 3 123 304 22 199 2.15e-21 90.5
Msa0278580 AT4G35070.1 30.601 183 121 3 123 304 77 254 2.16e-21 92.0
Msa0278580 AT1G32740.3 31.111 225 136 7 100 310 44 263 2.71e-20 89.0
Msa0278580 AT1G32740.2 31.111 225 136 7 100 310 44 263 2.71e-20 89.0
Msa0278580 AT1G32740.1 31.111 225 136 7 100 310 88 307 4.31e-20 89.4
Msa0278580 AT1G32740.4 31.111 225 136 7 100 310 77 296 4.72e-20 89.0
Msa0278580 AT5G47050.1 26.400 250 156 4 70 315 75 300 3.62e-19 86.3
Msa0278580 AT4G17680.1 25.385 260 153 7 86 312 61 312 4.06e-18 83.6
Msa0278580 AT4G17680.2 25.628 199 134 4 120 312 50 240 2.74e-17 80.1
Msa0278580 AT4G17680.3 26.087 184 122 4 135 312 13 188 1.38e-13 68.6
Msa0278580 AT2G12290.1 50.769 65 31 1 178 242 28 91 5.44e-12 62.8

Find 74 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATAGATGTGGCTAAGTATT+AGG 0.196357 2_3:-11586851 None:intergenic
CAAATTGTTACGTAAATAAT+TGG 0.209804 2_3:-11588595 None:intergenic
CAAACATTGGATTGATAAAA+TGG 0.230510 2_3:-11587539 None:intergenic
TAATGTAAATTTGTTGTTCT+AGG 0.236309 2_3:-11588907 None:intergenic
AAAGAATAGGGAAGCTAAAT+TGG 0.250485 2_3:+11588493 Msa0278580:CDS
CAATTATTTACGTAACAATT+TGG 0.251798 2_3:+11588596 Msa0278580:CDS
TAGAACAACAAATTTACATT+AGG 0.275179 2_3:+11588909 Msa0278580:exon
AGTACCTGTTTGTGAGTAAA+TGG 0.303204 2_3:-11587062 None:intergenic
TTGTGTTGTTACTACCTTGT+AGG 0.317083 2_3:+11588793 Msa0278580:CDS
GATGAAGAGATTCAAAGAAT+AGG 0.332254 2_3:+11588480 Msa0278580:CDS
ATGAAGAGATTCAAAGAATA+GGG 0.348961 2_3:+11588481 Msa0278580:CDS
AGAACAACAAATTTACATTA+GGG 0.349342 2_3:+11588910 Msa0278580:exon
AAGTTTAAGTGCTGAAAATC+AGG 0.355207 2_3:+11588536 Msa0278580:CDS
GAAAGTGAGAATGGAGTTAG+AGG 0.361074 2_3:+11588383 Msa0278580:CDS
ATAGATTCATGCATTGTTGT+TGG 0.375132 2_3:-11587512 None:intergenic
AGAGAGAGTTTGGTTTGGTT+TGG 0.377799 2_3:-11586941 None:intergenic
GTATTGTTTGTGAGATTTAG+AGG 0.379269 2_3:-11586919 None:intergenic
AAGGCTTAGTATTTAGCCTT+TGG 0.390285 2_3:-11586797 None:intergenic
TAACAATTTGGAACAAGTTA+TGG 0.392210 2_3:+11588608 Msa0278580:CDS
GACTGTCGGTGGTGGTGGTT+TGG 0.395247 2_3:+11588734 Msa0278580:CDS
AATGAATGAATGAATGATTC+AGG 0.399157 2_3:-11586821 None:intergenic
ATATTGTGTGAGAGAGAGTT+TGG 0.400060 2_3:-11586951 None:intergenic
TGCGATCAATATCAGATTGC+TGG 0.414409 2_3:-11587733 None:intergenic
ATGACGCTGAATCGAGTTGC+GGG 0.417866 2_3:+11588673 Msa0278580:CDS
ATCAATATGTTATTACAGTT+AGG 0.418528 2_3:+11588997 Msa0278580:three_prime_UTR
ATAGATGTGGCTAAGTATTA+GGG 0.422835 2_3:-11586850 None:intergenic
TCGGTGGTGGTGGTTTGGTT+AGG 0.423324 2_3:+11588739 Msa0278580:CDS
AGACCACTATCAGCTCTGTT+TGG 0.425440 2_3:-11587566 None:intergenic
GTTAGGATGTGTAAGAATTG+TGG 0.438375 2_3:+11588756 Msa0278580:CDS
CTAGCCATTTACTCACAAAC+AGG 0.450456 2_3:+11587058 Msa0278580:CDS
TCATCATGCCGCTGCGGCCG+AGG 0.450535 2_3:+11588650 Msa0278580:CDS
TCATGCATTGTTGTTGGAAG+AGG 0.451659 2_3:-11587506 None:intergenic
ACAGAATGAGAAAGTGAGAA+TGG 0.452277 2_3:+11588374 Msa0278580:intron
TAAGTGCTGAAAATCAGGTT+TGG 0.460640 2_3:+11588541 Msa0278580:CDS
CAAAGGCACAAATGCCTACA+AGG 0.486790 2_3:-11588807 None:intergenic
TGTGCCTTTGCAATGTGTGC+GGG 0.488765 2_3:+11588820 Msa0278580:CDS
GCGGCGACTGTCGGTGGTGG+TGG 0.490968 2_3:+11588729 Msa0278580:CDS
TTAGGATGTGTAAGAATTGT+GGG 0.497897 2_3:+11588757 Msa0278580:CDS
AATGAAAGAAGAGAATAAGA+AGG 0.510715 2_3:-11586894 None:intergenic
TGCTGAAAATCAGGTTTGGA+GGG 0.519581 2_3:+11588545 Msa0278580:CDS
GTGTAAGAATTGTGGGGTGA+GGG 0.520811 2_3:+11588764 Msa0278580:CDS
GTGCTGAAAATCAGGTTTGG+AGG 0.526743 2_3:+11588544 Msa0278580:CDS
GTGTGAGAGAGAGTTTGGTT+TGG 0.530762 2_3:-11586946 None:intergenic
ACTCGATTCAGCGTCATCCT+CGG 0.538662 2_3:-11588667 None:intergenic
TGTGTAAGAATTGTGGGGTG+AGG 0.539846 2_3:+11588763 Msa0278580:CDS
GAATCGAGTTGCGGGAGTAA+TGG 0.541126 2_3:+11588681 Msa0278580:CDS
AGCGTCATCCTCGGCCGCAG+CGG 0.547182 2_3:-11588658 None:intergenic
AAATGTCCAGTGTGTGACTC+TGG 0.547650 2_3:+11588855 Msa0278580:CDS
ACCGCGGCGACTGTCGGTGG+TGG 0.548750 2_3:+11588726 Msa0278580:CDS
GAGTTGCGGGAGTAATGGTC+CGG 0.554586 2_3:+11588686 Msa0278580:CDS
TCTGTTTGGATCACAAACAT+TGG 0.555502 2_3:-11587552 None:intergenic
TGAATTATACAATGTTCAGA+TGG 0.557789 2_3:+11587472 Msa0278580:CDS
GTGTCTTCACCATCGTCAGC+CGG 0.559591 2_3:-11588705 None:intergenic
AATGAGGCAATCAAGGATGT+TGG 0.559955 2_3:+11588413 Msa0278580:CDS
ATGAATGAATGATTCAGGTA+AGG 0.561034 2_3:-11586816 None:intergenic
GAAGACACCGCGGCGACTGT+CGG 0.571935 2_3:+11588720 Msa0278580:CDS
TTGTGCCTTTGCAATGTGTG+CGG 0.572306 2_3:+11588819 Msa0278580:CDS
TTTGTGAGTAAATGGCTAGA+AGG 0.583293 2_3:-11587054 None:intergenic
TCCAGTGTGTGACTCTGGCA+TGG 0.597448 2_3:+11588860 Msa0278580:CDS
CACTGGACATTTACGAACAG+TGG 0.609918 2_3:-11588844 None:intergenic
GACACCGCGGCGACTGTCGG+TGG 0.614188 2_3:+11588723 Msa0278580:CDS
AGTAATGGTCCGGCTGACGA+TGG 0.620198 2_3:+11588696 Msa0278580:CDS
AGTTATGGCACATGTCAATG+AGG 0.626941 2_3:+11588623 Msa0278580:CDS
GATCCAAACAGAGCTGATAG+TGG 0.638226 2_3:+11587563 Msa0278580:CDS
GATGACGCTGAATCGAGTTG+CGG 0.639252 2_3:+11588672 Msa0278580:CDS
AAGAGAGCATGCAATAGATG+TGG 0.641776 2_3:-11586863 None:intergenic
GTTATGGCACATGTCAATGA+GGG 0.650135 2_3:+11588624 Msa0278580:CDS
TCCATGCCAGAGTCACACAC+TGG 0.661955 2_3:-11588861 None:intergenic
TGGACCCGCACACATTGCAA+AGG 0.662474 2_3:-11588824 None:intergenic
GATGTGGCTAAGTATTAGGG+AGG 0.685113 2_3:-11586847 None:intergenic
GGGACATCATCATGCCGCTG+CGG 0.686145 2_3:+11588644 Msa0278580:CDS
ACCACCACCGACAGTCGCCG+CGG 0.694431 2_3:-11588727 None:intergenic
TAGGATGTGTAAGAATTGTG+GGG 0.749557 2_3:+11588758 Msa0278580:CDS
TGACGATGGTGAAGACACCG+CGG 0.808171 2_3:+11588710 Msa0278580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAAATAAATAAAAAA+CGG - chr2_3:11588004-11588023 None:intergenic 0.0%
!! AAAAATAAATAAATTATATT+TGG + chr2_3:11588113-11588132 Msa0278580:intron 0.0%
!! AAAATAAATAAATTATATTT+GGG + chr2_3:11588114-11588133 Msa0278580:intron 0.0%
!! ATTAAAAAATAAATAAAAAA+CGG - chr2_3:11588004-11588023 None:intergenic 0.0%
!! AAAAATAAATAAATTATATT+TGG + chr2_3:11588113-11588132 Msa0278580:intron 0.0%
!! AAAATAAATAAATTATATTT+GGG + chr2_3:11588114-11588133 Msa0278580:intron 0.0%
!!! TAAAAAAATAATCGTTTTAA+AGG - chr2_3:11587350-11587369 None:intergenic 10.0%
!!! TATTTTTGTTTTTTTTATAC+AGG + chr2_3:11587393-11587412 Msa0278580:intron 10.0%
!!! ATTTTTGTTTTTTTTATACA+GGG + chr2_3:11587394-11587413 Msa0278580:intron 10.0%
!!! TATTTTTATGATAATCAAAA+CGG - chr2_3:11588100-11588119 None:intergenic 10.0%
!!! ATAAACTAATTTTCTATAAA+AGG + chr2_3:11588147-11588166 Msa0278580:intron 10.0%
!!! TATTTTTGCTAATATTTTTA+TGG + chr2_3:11588259-11588278 Msa0278580:intron 10.0%
!!! TAAAAAAATAATCGTTTTAA+AGG - chr2_3:11587350-11587369 None:intergenic 10.0%
!!! TATTTTTGTTTTTTTTATAC+AGG + chr2_3:11587393-11587412 Msa0278580:intron 10.0%
!!! ATTTTTGTTTTTTTTATACA+GGG + chr2_3:11587394-11587413 Msa0278580:intron 10.0%
!!! TATTTTTATGATAATCAAAA+CGG - chr2_3:11588100-11588119 None:intergenic 10.0%
!!! ATAAACTAATTTTCTATAAA+AGG + chr2_3:11588147-11588166 Msa0278580:intron 10.0%
!!! TATTTTTGCTAATATTTTTA+TGG + chr2_3:11588259-11588278 Msa0278580:intron 10.0%
!! ACTTTGAATGAAAATATTAA+TGG + chr2_3:11587947-11587966 Msa0278580:intron 15.0%
!! CTTTGAATGAAAATATTAAT+GGG + chr2_3:11587948-11587967 Msa0278580:intron 15.0%
!! TTTGAATGAAAATATTAATG+GGG + chr2_3:11587949-11587968 Msa0278580:intron 15.0%
!!! TTTAAGTTTTTTTTAACATG+CGG + chr2_3:11588045-11588064 Msa0278580:intron 15.0%
!! ACTTTGAATGAAAATATTAA+TGG + chr2_3:11587947-11587966 Msa0278580:intron 15.0%
!! CTTTGAATGAAAATATTAAT+GGG + chr2_3:11587948-11587967 Msa0278580:intron 15.0%
!! TTTGAATGAAAATATTAATG+GGG + chr2_3:11587949-11587968 Msa0278580:intron 15.0%
!!! TTTAAGTTTTTTTTAACATG+CGG + chr2_3:11588045-11588064 Msa0278580:intron 15.0%
!!! GTACTATATTTTTGTCTTTA+AGG + chr2_3:11587080-11587099 Msa0278580:intron 20.0%
!! TTGTGTTTGAAAAAGAAAAA+AGG + chr2_3:11587847-11587866 Msa0278580:intron 20.0%
!! TAAATTGAGTAACTGATAAA+GGG + chr2_3:11587908-11587927 Msa0278580:intron 20.0%
!!! GGTGTTTTATATTTTCTAAA+AGG + chr2_3:11587970-11587989 Msa0278580:intron 20.0%
!! TAATTACACATAAATAGTAC+AGG - chr2_3:11588329-11588348 None:intergenic 20.0%
!! CAAATTGTTACGTAAATAAT+TGG - chr2_3:11588598-11588617 None:intergenic 20.0%
!! CAATTATTTACGTAACAATT+TGG + chr2_3:11588596-11588615 Msa0278580:CDS 20.0%
!!! TAATGTAAATTTGTTGTTCT+AGG - chr2_3:11588910-11588929 None:intergenic 20.0%
!! TAGAACAACAAATTTACATT+AGG + chr2_3:11588909-11588928 Msa0278580:exon 20.0%
!! AGAACAACAAATTTACATTA+GGG + chr2_3:11588910-11588929 Msa0278580:exon 20.0%
!!! TTTTTTTGTCTGATTTGTAA+TGG - chr2_3:11588947-11588966 None:intergenic 20.0%
!! ACAAATCAGACAAAAAAATT+AGG + chr2_3:11588949-11588968 Msa0278580:three_prime_UTR 20.0%
!! CAAATCAGACAAAAAAATTA+GGG + chr2_3:11588950-11588969 Msa0278580:three_prime_UTR 20.0%
!! ATCAATATGTTATTACAGTT+AGG + chr2_3:11588997-11589016 Msa0278580:three_prime_UTR 20.0%
!! GGACAAAAAAAGAAAAAAAA+AGG + chr2_3:11589018-11589037 Msa0278580:three_prime_UTR 20.0%
!!! GTACTATATTTTTGTCTTTA+AGG + chr2_3:11587080-11587099 Msa0278580:intron 20.0%
!! TTGTGTTTGAAAAAGAAAAA+AGG + chr2_3:11587847-11587866 Msa0278580:intron 20.0%
!! TAAATTGAGTAACTGATAAA+GGG + chr2_3:11587908-11587927 Msa0278580:intron 20.0%
!!! GGTGTTTTATATTTTCTAAA+AGG + chr2_3:11587970-11587989 Msa0278580:intron 20.0%
!! TAATTACACATAAATAGTAC+AGG - chr2_3:11588329-11588348 None:intergenic 20.0%
!! CAAATTGTTACGTAAATAAT+TGG - chr2_3:11588598-11588617 None:intergenic 20.0%
!! CAATTATTTACGTAACAATT+TGG + chr2_3:11588596-11588615 Msa0278580:CDS 20.0%
!!! TAATGTAAATTTGTTGTTCT+AGG - chr2_3:11588910-11588929 None:intergenic 20.0%
!! TAGAACAACAAATTTACATT+AGG + chr2_3:11588909-11588928 Msa0278580:exon 20.0%
!! AGAACAACAAATTTACATTA+GGG + chr2_3:11588910-11588929 Msa0278580:exon 20.0%
!!! TTTTTTTGTCTGATTTGTAA+TGG - chr2_3:11588947-11588966 None:intergenic 20.0%
!! ACAAATCAGACAAAAAAATT+AGG + chr2_3:11588949-11588968 Msa0278580:three_prime_UTR 20.0%
!! CAAATCAGACAAAAAAATTA+GGG + chr2_3:11588950-11588969 Msa0278580:three_prime_UTR 20.0%
!! ATCAATATGTTATTACAGTT+AGG + chr2_3:11588997-11589016 Msa0278580:three_prime_UTR 20.0%
!! GGACAAAAAAAGAAAAAAAA+AGG + chr2_3:11589018-11589037 Msa0278580:three_prime_UTR 20.0%
! AATGAATGAATGAATGATTC+AGG - chr2_3:11586824-11586843 None:intergenic 25.0%
! AATGAAAGAAGAGAATAAGA+AGG - chr2_3:11586897-11586916 None:intergenic 25.0%
!!! ACAAAAGATGCTTTTTGATA+AGG - chr2_3:11587000-11587019 None:intergenic 25.0%
!!! TCAAAAAGCATCTTTTGTTA+TGG + chr2_3:11587002-11587021 Msa0278580:exon 25.0%
! AATGATTAAGTGTTTGTGTT+TGG - chr2_3:11587282-11587301 None:intergenic 25.0%
! TGAATTATACAATGTTCAGA+TGG + chr2_3:11587472-11587491 Msa0278580:CDS 25.0%
! CAAACATTGGATTGATAAAA+TGG - chr2_3:11587542-11587561 None:intergenic 25.0%
!!! AAGAGATTTTTCAACTGAAT+TGG + chr2_3:11587622-11587641 Msa0278580:CDS 25.0%
!! ATTACTCTATTCTTTTGATG+AGG - chr2_3:11587659-11587678 None:intergenic 25.0%
! AAAAAATTACATGATGAGCT+AGG - chr2_3:11587760-11587779 None:intergenic 25.0%
! AGAGATAATTAAACAAGTGA+AGG - chr2_3:11587786-11587805 None:intergenic 25.0%
! CTAAATTGAGTAACTGATAA+AGG + chr2_3:11587907-11587926 Msa0278580:intron 25.0%
! ATGAAGAGATTCAAAGAATA+GGG + chr2_3:11588481-11588500 Msa0278580:CDS 25.0%
!! TAACAATTTGGAACAAGTTA+TGG + chr2_3:11588608-11588627 Msa0278580:CDS 25.0%
! AATGAATGAATGAATGATTC+AGG - chr2_3:11586824-11586843 None:intergenic 25.0%
! AATGAAAGAAGAGAATAAGA+AGG - chr2_3:11586897-11586916 None:intergenic 25.0%
!!! ACAAAAGATGCTTTTTGATA+AGG - chr2_3:11587000-11587019 None:intergenic 25.0%
!!! TCAAAAAGCATCTTTTGTTA+TGG + chr2_3:11587002-11587021 Msa0278580:exon 25.0%
! AATGATTAAGTGTTTGTGTT+TGG - chr2_3:11587282-11587301 None:intergenic 25.0%
! TGAATTATACAATGTTCAGA+TGG + chr2_3:11587472-11587491 Msa0278580:CDS 25.0%
! CAAACATTGGATTGATAAAA+TGG - chr2_3:11587542-11587561 None:intergenic 25.0%
!!! AAGAGATTTTTCAACTGAAT+TGG + chr2_3:11587622-11587641 Msa0278580:CDS 25.0%
!! ATTACTCTATTCTTTTGATG+AGG - chr2_3:11587659-11587678 None:intergenic 25.0%
! AAAAAATTACATGATGAGCT+AGG - chr2_3:11587760-11587779 None:intergenic 25.0%
! AGAGATAATTAAACAAGTGA+AGG - chr2_3:11587786-11587805 None:intergenic 25.0%
! CTAAATTGAGTAACTGATAA+AGG + chr2_3:11587907-11587926 Msa0278580:intron 25.0%
! ATGAAGAGATTCAAAGAATA+GGG + chr2_3:11588481-11588500 Msa0278580:CDS 25.0%
!! TAACAATTTGGAACAAGTTA+TGG + chr2_3:11588608-11588627 Msa0278580:CDS 25.0%
!!! GCCTTTGGTTTTTTATATGT+GGG - chr2_3:11586785-11586804 None:intergenic 30.0%
!!! AGCCTTTGGTTTTTTATATG+TGG - chr2_3:11586786-11586805 None:intergenic 30.0%
ATGAATGAATGATTCAGGTA+AGG - chr2_3:11586819-11586838 None:intergenic 30.0%
ATAGATGTGGCTAAGTATTA+GGG - chr2_3:11586853-11586872 None:intergenic 30.0%
AATAGATGTGGCTAAGTATT+AGG - chr2_3:11586854-11586873 None:intergenic 30.0%
GTATTGTTTGTGAGATTTAG+AGG - chr2_3:11586922-11586941 None:intergenic 30.0%
!! GATGCTTTTTGATAAGGTTA+AGG - chr2_3:11586994-11587013 None:intergenic 30.0%
!!! TGTAGTTTTAACTGAAACCA+CGG - chr2_3:11587201-11587220 None:intergenic 30.0%
CAGTTAAAACTACACTTTGT+AGG + chr2_3:11587207-11587226 Msa0278580:intron 30.0%
TAATCATTAGAATCCATCGA+CGG + chr2_3:11587294-11587313 Msa0278580:intron 30.0%
ATAGATTCATGCATTGTTGT+TGG - chr2_3:11587515-11587534 None:intergenic 30.0%
AGTTAGAGGAACAAAAAATG+AGG + chr2_3:11588397-11588416 Msa0278580:CDS 30.0%
AACAAAAAATGAGGCAATCA+AGG + chr2_3:11588406-11588425 Msa0278580:CDS 30.0%
GATGAAGAGATTCAAAGAAT+AGG + chr2_3:11588480-11588499 Msa0278580:CDS 30.0%
AAAGAATAGGGAAGCTAAAT+TGG + chr2_3:11588493-11588512 Msa0278580:CDS 30.0%
!! AAGTTTAAGTGCTGAAAATC+AGG + chr2_3:11588536-11588555 Msa0278580:CDS 30.0%
TTAGGATGTGTAAGAATTGT+GGG + chr2_3:11588757-11588776 Msa0278580:CDS 30.0%
!!! GCCTTTGGTTTTTTATATGT+GGG - chr2_3:11586785-11586804 None:intergenic 30.0%
!!! AGCCTTTGGTTTTTTATATG+TGG - chr2_3:11586786-11586805 None:intergenic 30.0%
ATGAATGAATGATTCAGGTA+AGG - chr2_3:11586819-11586838 None:intergenic 30.0%
ATAGATGTGGCTAAGTATTA+GGG - chr2_3:11586853-11586872 None:intergenic 30.0%
AATAGATGTGGCTAAGTATT+AGG - chr2_3:11586854-11586873 None:intergenic 30.0%
GTATTGTTTGTGAGATTTAG+AGG - chr2_3:11586922-11586941 None:intergenic 30.0%
!! GATGCTTTTTGATAAGGTTA+AGG - chr2_3:11586994-11587013 None:intergenic 30.0%
!!! TGTAGTTTTAACTGAAACCA+CGG - chr2_3:11587201-11587220 None:intergenic 30.0%
CAGTTAAAACTACACTTTGT+AGG + chr2_3:11587207-11587226 Msa0278580:intron 30.0%
TAATCATTAGAATCCATCGA+CGG + chr2_3:11587294-11587313 Msa0278580:intron 30.0%
ATAGATTCATGCATTGTTGT+TGG - chr2_3:11587515-11587534 None:intergenic 30.0%
AGTTAGAGGAACAAAAAATG+AGG + chr2_3:11588397-11588416 Msa0278580:CDS 30.0%
AACAAAAAATGAGGCAATCA+AGG + chr2_3:11588406-11588425 Msa0278580:CDS 30.0%
GATGAAGAGATTCAAAGAAT+AGG + chr2_3:11588480-11588499 Msa0278580:CDS 30.0%
AAAGAATAGGGAAGCTAAAT+TGG + chr2_3:11588493-11588512 Msa0278580:CDS 30.0%
!! AAGTTTAAGTGCTGAAAATC+AGG + chr2_3:11588536-11588555 Msa0278580:CDS 30.0%
TTAGGATGTGTAAGAATTGT+GGG + chr2_3:11588757-11588776 Msa0278580:CDS 30.0%
GCCCACATATAAAAAACCAA+AGG + chr2_3:11586781-11586800 Msa0278580:five_prime_UTR 35.0%
! AAGGCTTAGTATTTAGCCTT+TGG - chr2_3:11586800-11586819 None:intergenic 35.0%
ATATTGTGTGAGAGAGAGTT+TGG - chr2_3:11586954-11586973 None:intergenic 35.0%
TTTGTGAGTAAATGGCTAGA+AGG - chr2_3:11587057-11587076 None:intergenic 35.0%
AGTACCTGTTTGTGAGTAAA+TGG - chr2_3:11587065-11587084 None:intergenic 35.0%
AGTGTTTGTGTTTGGATTCA+CGG - chr2_3:11587274-11587293 None:intergenic 35.0%
TCTGTTTGGATCACAAACAT+TGG - chr2_3:11587555-11587574 None:intergenic 35.0%
!! CTTGAACGTTTTCTTTGAAG+AGG - chr2_3:11587605-11587624 None:intergenic 35.0%
! ACTCTATTCTTTTGATGAGG+TGG - chr2_3:11587656-11587675 None:intergenic 35.0%
ATGCGGAGAAAACTTAAGTA+GGG + chr2_3:11588062-11588081 Msa0278580:intron 35.0%
ACAGAATGAGAAAGTGAGAA+TGG + chr2_3:11588374-11588393 Msa0278580:intron 35.0%
!! TAAGTGCTGAAAATCAGGTT+TGG + chr2_3:11588541-11588560 Msa0278580:CDS 35.0%
GTTAGGATGTGTAAGAATTG+TGG + chr2_3:11588756-11588775 Msa0278580:CDS 35.0%
TAGGATGTGTAAGAATTGTG+GGG + chr2_3:11588758-11588777 Msa0278580:CDS 35.0%
! TTGTGTTGTTACTACCTTGT+AGG + chr2_3:11588793-11588812 Msa0278580:CDS 35.0%
GCCCACATATAAAAAACCAA+AGG + chr2_3:11586781-11586800 Msa0278580:five_prime_UTR 35.0%
! AAGGCTTAGTATTTAGCCTT+TGG - chr2_3:11586800-11586819 None:intergenic 35.0%
ATATTGTGTGAGAGAGAGTT+TGG - chr2_3:11586954-11586973 None:intergenic 35.0%
TTTGTGAGTAAATGGCTAGA+AGG - chr2_3:11587057-11587076 None:intergenic 35.0%
AGTACCTGTTTGTGAGTAAA+TGG - chr2_3:11587065-11587084 None:intergenic 35.0%
AGTGTTTGTGTTTGGATTCA+CGG - chr2_3:11587274-11587293 None:intergenic 35.0%
TCTGTTTGGATCACAAACAT+TGG - chr2_3:11587555-11587574 None:intergenic 35.0%
!! CTTGAACGTTTTCTTTGAAG+AGG - chr2_3:11587605-11587624 None:intergenic 35.0%
! ACTCTATTCTTTTGATGAGG+TGG - chr2_3:11587656-11587675 None:intergenic 35.0%
ATGCGGAGAAAACTTAAGTA+GGG + chr2_3:11588062-11588081 Msa0278580:intron 35.0%
ACAGAATGAGAAAGTGAGAA+TGG + chr2_3:11588374-11588393 Msa0278580:intron 35.0%
!! TAAGTGCTGAAAATCAGGTT+TGG + chr2_3:11588541-11588560 Msa0278580:CDS 35.0%
GTTAGGATGTGTAAGAATTG+TGG + chr2_3:11588756-11588775 Msa0278580:CDS 35.0%
TAGGATGTGTAAGAATTGTG+GGG + chr2_3:11588758-11588777 Msa0278580:CDS 35.0%
! TTGTGTTGTTACTACCTTGT+AGG + chr2_3:11588793-11588812 Msa0278580:CDS 35.0%
! AAGAGAGCATGCAATAGATG+TGG - chr2_3:11586866-11586885 None:intergenic 40.0%
!! AGAGAGAGTTTGGTTTGGTT+TGG - chr2_3:11586944-11586963 None:intergenic 40.0%
CTAGCCATTTACTCACAAAC+AGG + chr2_3:11587058-11587077 Msa0278580:CDS 40.0%
!!! AGTTTTAACTGAAACCACGG+TGG - chr2_3:11587198-11587217 None:intergenic 40.0%
TCGTTAGAAATATCCGTCGA+TGG - chr2_3:11587310-11587329 None:intergenic 40.0%
! TCATGCATTGTTGTTGGAAG+AGG - chr2_3:11587509-11587528 None:intergenic 40.0%
TGCGATCAATATCAGATTGC+TGG - chr2_3:11587736-11587755 None:intergenic 40.0%
CATGCGGAGAAAACTTAAGT+AGG + chr2_3:11588061-11588080 Msa0278580:intron 40.0%
GAAAGTGAGAATGGAGTTAG+AGG + chr2_3:11588383-11588402 Msa0278580:CDS 40.0%
AATGAGGCAATCAAGGATGT+TGG + chr2_3:11588413-11588432 Msa0278580:CDS 40.0%
TGCTGAAAATCAGGTTTGGA+GGG + chr2_3:11588545-11588564 Msa0278580:CDS 40.0%
AGTTATGGCACATGTCAATG+AGG + chr2_3:11588623-11588642 Msa0278580:CDS 40.0%
GTTATGGCACATGTCAATGA+GGG + chr2_3:11588624-11588643 Msa0278580:CDS 40.0%
! AAGAGAGCATGCAATAGATG+TGG - chr2_3:11586866-11586885 None:intergenic 40.0%
!! AGAGAGAGTTTGGTTTGGTT+TGG - chr2_3:11586944-11586963 None:intergenic 40.0%
CTAGCCATTTACTCACAAAC+AGG + chr2_3:11587058-11587077 Msa0278580:CDS 40.0%
!!! AGTTTTAACTGAAACCACGG+TGG - chr2_3:11587198-11587217 None:intergenic 40.0%
TCGTTAGAAATATCCGTCGA+TGG - chr2_3:11587310-11587329 None:intergenic 40.0%
! TCATGCATTGTTGTTGGAAG+AGG - chr2_3:11587509-11587528 None:intergenic 40.0%
TGCGATCAATATCAGATTGC+TGG - chr2_3:11587736-11587755 None:intergenic 40.0%
CATGCGGAGAAAACTTAAGT+AGG + chr2_3:11588061-11588080 Msa0278580:intron 40.0%
GAAAGTGAGAATGGAGTTAG+AGG + chr2_3:11588383-11588402 Msa0278580:CDS 40.0%
AATGAGGCAATCAAGGATGT+TGG + chr2_3:11588413-11588432 Msa0278580:CDS 40.0%
TGCTGAAAATCAGGTTTGGA+GGG + chr2_3:11588545-11588564 Msa0278580:CDS 40.0%
AGTTATGGCACATGTCAATG+AGG + chr2_3:11588623-11588642 Msa0278580:CDS 40.0%
GTTATGGCACATGTCAATGA+GGG + chr2_3:11588624-11588643 Msa0278580:CDS 40.0%
GATGTGGCTAAGTATTAGGG+AGG - chr2_3:11586850-11586869 None:intergenic 45.0%
GTGTGAGAGAGAGTTTGGTT+TGG - chr2_3:11586949-11586968 None:intergenic 45.0%
GATCCAAACAGAGCTGATAG+TGG + chr2_3:11587563-11587582 Msa0278580:CDS 45.0%
AGACCACTATCAGCTCTGTT+TGG - chr2_3:11587569-11587588 None:intergenic 45.0%
GTGCTGAAAATCAGGTTTGG+AGG + chr2_3:11588544-11588563 Msa0278580:CDS 45.0%
TGTGTAAGAATTGTGGGGTG+AGG + chr2_3:11588763-11588782 Msa0278580:CDS 45.0%
GTGTAAGAATTGTGGGGTGA+GGG + chr2_3:11588764-11588783 Msa0278580:CDS 45.0%
! CAAAGGCACAAATGCCTACA+AGG - chr2_3:11588810-11588829 None:intergenic 45.0%
TTGTGCCTTTGCAATGTGTG+CGG + chr2_3:11588819-11588838 Msa0278580:CDS 45.0%
CACTGGACATTTACGAACAG+TGG - chr2_3:11588847-11588866 None:intergenic 45.0%
AAATGTCCAGTGTGTGACTC+TGG + chr2_3:11588855-11588874 Msa0278580:CDS 45.0%
GATGTGGCTAAGTATTAGGG+AGG - chr2_3:11586850-11586869 None:intergenic 45.0%
GTGTGAGAGAGAGTTTGGTT+TGG - chr2_3:11586949-11586968 None:intergenic 45.0%
GATCCAAACAGAGCTGATAG+TGG + chr2_3:11587563-11587582 Msa0278580:CDS 45.0%
AGACCACTATCAGCTCTGTT+TGG - chr2_3:11587569-11587588 None:intergenic 45.0%
GTGCTGAAAATCAGGTTTGG+AGG + chr2_3:11588544-11588563 Msa0278580:CDS 45.0%
TGTGTAAGAATTGTGGGGTG+AGG + chr2_3:11588763-11588782 Msa0278580:CDS 45.0%
GTGTAAGAATTGTGGGGTGA+GGG + chr2_3:11588764-11588783 Msa0278580:CDS 45.0%
! CAAAGGCACAAATGCCTACA+AGG - chr2_3:11588810-11588829 None:intergenic 45.0%
TTGTGCCTTTGCAATGTGTG+CGG + chr2_3:11588819-11588838 Msa0278580:CDS 45.0%
CACTGGACATTTACGAACAG+TGG - chr2_3:11588847-11588866 None:intergenic 45.0%
AAATGTCCAGTGTGTGACTC+TGG + chr2_3:11588855-11588874 Msa0278580:CDS 45.0%
!! AAATAAATAAATTATATTTG+GGG + chr2_3:11588115-11588134 Msa0278580:intron 5.0%
!! AAATAAATAAATTATATTTG+GGG + chr2_3:11588115-11588134 Msa0278580:intron 5.0%
TCATGATGAACCCACCGTGT+CGG + chr2_3:11587142-11587161 Msa0278580:intron 50.0%
TTCTGACAAACCCACCGACA+CGG - chr2_3:11587159-11587178 None:intergenic 50.0%
AGAATCACGATGAACCACCG+TGG + chr2_3:11587181-11587200 Msa0278580:intron 50.0%
ACTCGATTCAGCGTCATCCT+CGG - chr2_3:11588670-11588689 None:intergenic 50.0%
! GATGACGCTGAATCGAGTTG+CGG + chr2_3:11588672-11588691 Msa0278580:CDS 50.0%
! ATGACGCTGAATCGAGTTGC+GGG + chr2_3:11588673-11588692 Msa0278580:CDS 50.0%
! GAATCGAGTTGCGGGAGTAA+TGG + chr2_3:11588681-11588700 Msa0278580:CDS 50.0%
TGTGCCTTTGCAATGTGTGC+GGG + chr2_3:11588820-11588839 Msa0278580:CDS 50.0%
TCATGATGAACCCACCGTGT+CGG + chr2_3:11587142-11587161 Msa0278580:intron 50.0%
TTCTGACAAACCCACCGACA+CGG - chr2_3:11587159-11587178 None:intergenic 50.0%
AGAATCACGATGAACCACCG+TGG + chr2_3:11587181-11587200 Msa0278580:intron 50.0%
ACTCGATTCAGCGTCATCCT+CGG - chr2_3:11588670-11588689 None:intergenic 50.0%
! GATGACGCTGAATCGAGTTG+CGG + chr2_3:11588672-11588691 Msa0278580:CDS 50.0%
! ATGACGCTGAATCGAGTTGC+GGG + chr2_3:11588673-11588692 Msa0278580:CDS 50.0%
! GAATCGAGTTGCGGGAGTAA+TGG + chr2_3:11588681-11588700 Msa0278580:CDS 50.0%
TGTGCCTTTGCAATGTGTGC+GGG + chr2_3:11588820-11588839 Msa0278580:CDS 50.0%
GAGTTGCGGGAGTAATGGTC+CGG + chr2_3:11588686-11588705 Msa0278580:CDS 55.0%
AGTAATGGTCCGGCTGACGA+TGG + chr2_3:11588696-11588715 Msa0278580:CDS 55.0%
GTGTCTTCACCATCGTCAGC+CGG - chr2_3:11588708-11588727 None:intergenic 55.0%
TGACGATGGTGAAGACACCG+CGG + chr2_3:11588710-11588729 Msa0278580:CDS 55.0%
!! TCGGTGGTGGTGGTTTGGTT+AGG + chr2_3:11588739-11588758 Msa0278580:CDS 55.0%
TGGACCCGCACACATTGCAA+AGG - chr2_3:11588827-11588846 None:intergenic 55.0%
TCCAGTGTGTGACTCTGGCA+TGG + chr2_3:11588860-11588879 Msa0278580:CDS 55.0%
TCCATGCCAGAGTCACACAC+TGG - chr2_3:11588864-11588883 None:intergenic 55.0%
GAGTTGCGGGAGTAATGGTC+CGG + chr2_3:11588686-11588705 Msa0278580:CDS 55.0%
AGTAATGGTCCGGCTGACGA+TGG + chr2_3:11588696-11588715 Msa0278580:CDS 55.0%
GTGTCTTCACCATCGTCAGC+CGG - chr2_3:11588708-11588727 None:intergenic 55.0%
TGACGATGGTGAAGACACCG+CGG + chr2_3:11588710-11588729 Msa0278580:CDS 55.0%
!! TCGGTGGTGGTGGTTTGGTT+AGG + chr2_3:11588739-11588758 Msa0278580:CDS 55.0%
TGGACCCGCACACATTGCAA+AGG - chr2_3:11588827-11588846 None:intergenic 55.0%
TCCAGTGTGTGACTCTGGCA+TGG + chr2_3:11588860-11588879 Msa0278580:CDS 55.0%
TCCATGCCAGAGTCACACAC+TGG - chr2_3:11588864-11588883 None:intergenic 55.0%
TGATGAACCCACCGTGTCGG+TGG + chr2_3:11587145-11587164 Msa0278580:intron 60.0%
! GATGAACCCACCGTGTCGGT+GGG + chr2_3:11587146-11587165 Msa0278580:intron 60.0%
GACAAACCCACCGACACGGT+GGG - chr2_3:11587155-11587174 None:intergenic 60.0%
TGACAAACCCACCGACACGG+TGG - chr2_3:11587156-11587175 None:intergenic 60.0%
GGGACATCATCATGCCGCTG+CGG + chr2_3:11588644-11588663 Msa0278580:CDS 60.0%
!! GACTGTCGGTGGTGGTGGTT+TGG + chr2_3:11588734-11588753 Msa0278580:CDS 60.0%
TGATGAACCCACCGTGTCGG+TGG + chr2_3:11587145-11587164 Msa0278580:intron 60.0%
! GATGAACCCACCGTGTCGGT+GGG + chr2_3:11587146-11587165 Msa0278580:intron 60.0%
GACAAACCCACCGACACGGT+GGG - chr2_3:11587155-11587174 None:intergenic 60.0%
TGACAAACCCACCGACACGG+TGG - chr2_3:11587156-11587175 None:intergenic 60.0%
GGGACATCATCATGCCGCTG+CGG + chr2_3:11588644-11588663 Msa0278580:CDS 60.0%
!! GACTGTCGGTGGTGGTGGTT+TGG + chr2_3:11588734-11588753 Msa0278580:CDS 60.0%
GAAGACACCGCGGCGACTGT+CGG + chr2_3:11588720-11588739 Msa0278580:CDS 65.0%
GAAGACACCGCGGCGACTGT+CGG + chr2_3:11588720-11588739 Msa0278580:CDS 65.0%
TCATCATGCCGCTGCGGCCG+AGG + chr2_3:11588650-11588669 Msa0278580:CDS 70.0%
AGCGTCATCCTCGGCCGCAG+CGG - chr2_3:11588661-11588680 None:intergenic 70.0%
ACCACCACCGACAGTCGCCG+CGG - chr2_3:11588730-11588749 None:intergenic 70.0%
TCATCATGCCGCTGCGGCCG+AGG + chr2_3:11588650-11588669 Msa0278580:CDS 70.0%
AGCGTCATCCTCGGCCGCAG+CGG - chr2_3:11588661-11588680 None:intergenic 70.0%
ACCACCACCGACAGTCGCCG+CGG - chr2_3:11588730-11588749 None:intergenic 70.0%
GACACCGCGGCGACTGTCGG+TGG + chr2_3:11588723-11588742 Msa0278580:CDS 75.0%
ACCGCGGCGACTGTCGGTGG+TGG + chr2_3:11588726-11588745 Msa0278580:CDS 75.0%
! GCGGCGACTGTCGGTGGTGG+TGG + chr2_3:11588729-11588748 Msa0278580:CDS 75.0%
GACACCGCGGCGACTGTCGG+TGG + chr2_3:11588723-11588742 Msa0278580:CDS 75.0%
ACCGCGGCGACTGTCGGTGG+TGG + chr2_3:11588726-11588745 Msa0278580:CDS 75.0%
! GCGGCGACTGTCGGTGGTGG+TGG + chr2_3:11588729-11588748 Msa0278580:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 11586747 11589073 11586747 ID=Msa0278580;Name=Msa0278580
chr2_3 mRNA 11586747 11589073 11586747 ID=Msa0278580-mRNA-1;Parent=Msa0278580;Name=Msa0278580-mRNA-1;_AED=0.01;_eAED=0.01;_QI=274|1|1|1|1|1|3|162|315
chr2_3 exon 11586747 11587079 11586747 ID=Msa0278580-mRNA-1:exon:5196;Parent=Msa0278580-mRNA-1
chr2_3 exon 11587415 11587769 11587415 ID=Msa0278580-mRNA-1:exon:5197;Parent=Msa0278580-mRNA-1
chr2_3 exon 11588378 11589073 11588378 ID=Msa0278580-mRNA-1:exon:5198;Parent=Msa0278580-mRNA-1
chr2_3 five_prime_UTR 11586747 11587020 11586747 ID=Msa0278580-mRNA-1:five_prime_utr;Parent=Msa0278580-mRNA-1
chr2_3 CDS 11587021 11587079 11587021 ID=Msa0278580-mRNA-1:cds;Parent=Msa0278580-mRNA-1
chr2_3 CDS 11587415 11587769 11587415 ID=Msa0278580-mRNA-1:cds;Parent=Msa0278580-mRNA-1
chr2_3 CDS 11588378 11588911 11588378 ID=Msa0278580-mRNA-1:cds;Parent=Msa0278580-mRNA-1
chr2_3 three_prime_UTR 11588912 11589073 11588912 ID=Msa0278580-mRNA-1:three_prime_utr;Parent=Msa0278580-mRNA-1
Gene Sequence

>Msa0278580

ATGGCTGTTGATGCTAGTTACATGAATCTATTGCCTTCTAGCCATTTACTCACAAACAGGGAAATAATCAAATCTAATCAACATCATTATCAACAACAACAACAAATGTTGAACTCTGAATTATACAATGTTCAGATGGATTCTGCTGTGCCTCTTCCAACAACAATGCATGAATCTATGTTACCATTTTATCAATCCAATGTTTGTGATCCAAACAGAGCTGATAGTGGTCTTACTTACAACAATCCTCTTCAAAGAAAACGTTCAAGAGATTTTTCAACTGAATTGGTTTCTCTACCACCTCATCAAAAGAATAGAGTAATCTCATCTGAATCATCATCATCATTTGTTGATCAAGTTCTCTATCAATTTCAGAACCAGCAATCTGATATTGATCGCATCCTAGCTCATCATAATGAGAAAGTGAGAATGGAGTTAGAGGAACAAAAAATGAGGCAATCAAGGATGTTGGCATGCATGATTCAAGAGACAATAGCAAAGAAACTTAAAGAAAAAGATGAAGAGATTCAAAGAATAGGGAAGCTAAATTGGATGCTTCAAGAAAAAGTCAAAAGTTTAAGTGCTGAAAATCAGGTTTGGAGGGAGCTAGCACAAACAAATGAAACTACAGCCAATTATTTACGTAACAATTTGGAACAAGTTATGGCACATGTCAATGAGGGACATCATCATGCCGCTGCGGCCGAGGATGACGCTGAATCGAGTTGCGGGAGTAATGGTCCGGCTGACGATGGTGAAGACACCGCGGCGACTGTCGGTGGTGGTGGTTTGGTTAGGATGTGTAAGAATTGTGGGGTGAGGGAATCAGTTGTGTTGTTACTACCTTGTAGGCATTTGTGCCTTTGCAATGTGTGCGGGTCCACTGTTCGTAAATGTCCAGTGTGTGACTCTGGCATGGATGCTAGTGTGCATGTTAATCTCTCCTAG

Protein sequence

>Msa0278580

MAVDASYMNLLPSSHLLTNREIIKSNQHHYQQQQQMLNSELYNVQMDSAVPLPTTMHESMLPFYQSNVCDPNRADSGLTYNNPLQRKRSRDFSTELVSLPPHQKNRVISSESSSSFVDQVLYQFQNQQSDIDRILAHHNEKVRMELEEQKMRQSRMLACMIQETIAKKLKEKDEEIQRIGKLNWMLQEKVKSLSAENQVWRELAQTNETTANYLRNNLEQVMAHVNEGHHHAAAAEDDAESSCGSNGPADDGEDTAATVGGGGLVRMCKNCGVRESVVLLLPCRHLCLCNVCGSTVRKCPVCDSGMDASVHVNLS*