Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430360 | XP_003608120.1 | 97.949 | 195 | 4 | 0 | 1 | 195 | 10 | 204 | 4.23e-137 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430360 | sp|O49523|DSEL_ARATH | 53.368 | 193 | 87 | 3 | 5 | 195 | 20 | 211 | 3.31e-63 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430360 | G7JPP2 | 97.949 | 195 | 4 | 0 | 1 | 195 | 10 | 204 | 2.02e-137 | 399 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1367250 | Msa1430360 | 0.869948 | 2.110678e-66 | -8.615850e-47 |
| Msa1420460 | Msa1430360 | 0.819869 | 9.260666e-53 | -8.615850e-47 |
| Msa0132550 | Msa1430360 | 0.880944 | 3.613924e-70 | -8.615850e-47 |
| Msa1263840 | Msa1430360 | 0.831573 | 1.545820e-55 | -8.615850e-47 |
| Msa1263880 | Msa1430360 | 0.814363 | 1.600653e-51 | -8.615850e-47 |
| Msa0410170 | Msa1430360 | 0.819625 | 1.052681e-52 | -8.615850e-47 |
| Msa1015930 | Msa1430360 | 0.915767 | 3.979506e-85 | -8.615850e-47 |
| Msa1223290 | Msa1430360 | 0.869438 | 3.096901e-66 | -8.615850e-47 |
| Msa0500680 | Msa1430360 | 0.813664 | 2.282174e-51 | -8.615850e-47 |
| Msa0887620 | Msa1430360 | 0.861501 | 9.812210e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430360 | MtrunA17_Chr4g0046001 | 97.949 | 195 | 4 | 0 | 1 | 195 | 10 | 204 | 3.89e-141 | 399 |
| Msa1430360 | MtrunA17_Chr4g0046011 | 91.282 | 195 | 17 | 0 | 1 | 195 | 1 | 195 | 6.81e-134 | 380 |
| Msa1430360 | MtrunA17_Chr2g0283561 | 59.184 | 196 | 76 | 2 | 3 | 195 | 38 | 232 | 2.06e-81 | 248 |
| Msa1430360 | MtrunA17_Chr4g0039301 | 40.306 | 196 | 108 | 4 | 1 | 195 | 97 | 284 | 1.52e-45 | 157 |
| Msa1430360 | MtrunA17_Chr4g0041311 | 38.426 | 216 | 104 | 4 | 6 | 195 | 30 | 242 | 4.66e-44 | 151 |
| Msa1430360 | MtrunA17_Chr7g0260681 | 40.331 | 181 | 103 | 3 | 4 | 183 | 74 | 250 | 5.69e-43 | 148 |
| Msa1430360 | MtrunA17_Chr7g0260671 | 40.415 | 193 | 110 | 3 | 4 | 195 | 74 | 262 | 1.81e-42 | 148 |
| Msa1430360 | MtrunA17_Chr7g0214711 | 39.196 | 199 | 92 | 5 | 4 | 195 | 105 | 281 | 2.73e-38 | 137 |
| Msa1430360 | MtrunA17_Chr7g0250611 | 36.316 | 190 | 102 | 6 | 3 | 182 | 74 | 254 | 1.06e-27 | 107 |
| Msa1430360 | MtrunA17_Chr7g0250561 | 33.810 | 210 | 113 | 8 | 4 | 195 | 69 | 270 | 1.51e-25 | 102 |
| Msa1430360 | MtrunA17_Chr4g0055691 | 32.979 | 188 | 111 | 5 | 2 | 187 | 127 | 301 | 3.01e-22 | 93.2 |
| Msa1430360 | MtrunA17_Chr5g0399641 | 33.854 | 192 | 108 | 6 | 4 | 187 | 135 | 315 | 3.48e-22 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430360 | AT4G18550.3 | 53.368 | 193 | 87 | 3 | 5 | 195 | 37 | 228 | 1.08e-65 | 204 |
| Msa1430360 | AT4G18550.1 | 53.368 | 193 | 87 | 3 | 5 | 195 | 20 | 211 | 3.36e-64 | 204 |
| Msa1430360 | AT4G18550.2 | 53.368 | 193 | 87 | 3 | 5 | 195 | 37 | 228 | 4.29e-64 | 204 |
| Msa1430360 | AT1G06250.1 | 48.205 | 195 | 97 | 2 | 4 | 195 | 5 | 198 | 1.21e-63 | 202 |
| Msa1430360 | AT1G51440.1 | 41.837 | 196 | 103 | 5 | 3 | 195 | 86 | 273 | 1.99e-44 | 154 |
| Msa1430360 | AT2G30550.1 | 39.698 | 199 | 104 | 5 | 4 | 195 | 101 | 290 | 4.40e-42 | 147 |
| Msa1430360 | AT2G30550.2 | 39.698 | 199 | 104 | 5 | 4 | 195 | 101 | 290 | 1.80e-41 | 146 |
| Msa1430360 | AT2G42690.1 | 45.238 | 168 | 88 | 3 | 1 | 167 | 1 | 165 | 1.84e-40 | 142 |
| Msa1430360 | AT1G30370.1 | 37.056 | 197 | 110 | 4 | 4 | 195 | 114 | 301 | 1.73e-39 | 141 |
| Msa1430360 | AT1G06800.2 | 38.500 | 200 | 106 | 6 | 4 | 195 | 85 | 275 | 2.13e-39 | 140 |
| Msa1430360 | AT1G06800.1 | 38.500 | 200 | 106 | 6 | 4 | 195 | 85 | 275 | 6.72e-39 | 139 |
| Msa1430360 | AT2G31690.1 | 35.233 | 193 | 116 | 3 | 4 | 195 | 88 | 272 | 5.48e-36 | 131 |
| Msa1430360 | AT1G05800.1 | 35.751 | 193 | 112 | 4 | 4 | 195 | 80 | 261 | 5.28e-33 | 123 |
| Msa1430360 | AT2G44810.2 | 36.216 | 185 | 102 | 5 | 4 | 180 | 86 | 262 | 4.13e-29 | 112 |
| Msa1430360 | AT2G44810.1 | 36.872 | 179 | 97 | 5 | 10 | 180 | 2 | 172 | 1.11e-27 | 107 |
| Msa1430360 | AT4G16820.1 | 36.316 | 190 | 97 | 8 | 4 | 187 | 127 | 298 | 2.38e-24 | 99.8 |
| Msa1430360 | AT1G06250.2 | 48.810 | 84 | 40 | 1 | 115 | 195 | 1 | 84 | 1.79e-19 | 84.3 |
Find 44 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATGTTGCATACAAATATT+TGG | 0.233512 | tig0026647:-63375 | None:intergenic |
| TAATTGTCGTTATTCTAAAA+AGG | 0.269491 | tig0026647:+63298 | Msa1430360:CDS |
| GATCCTGCACCACTAATATT+TGG | 0.272052 | tig0026647:+63763 | Msa1430360:CDS |
| CGTAAGTACTTACTACATTA+TGG | 0.283055 | tig0026647:+63215 | Msa1430360:CDS |
| AAGTAAGTGGAAAGGTTTAT+TGG | 0.289889 | tig0026647:+63172 | Msa1430360:CDS |
| TTCGAAGGATGCTTGGAGTA+TGG | 0.324277 | tig0026647:+63439 | Msa1430360:CDS |
| GGCTGCACTATCACTTGCTT+TGG | 0.336091 | tig0026647:-63396 | None:intergenic |
| TGTATTTGTACATTTGATTC+CGG | 0.336182 | tig0026647:-63787 | None:intergenic |
| TGTTTGGAGAGGAACAATTC+AGG | 0.355595 | tig0026647:+63705 | Msa1430360:CDS |
| CTTGGAGTATGGAATCAAAT+TGG | 0.367290 | tig0026647:+63450 | Msa1430360:CDS |
| TTGGTCACAGAATACTTATA+AGG | 0.371532 | tig0026647:-63356 | None:intergenic |
| GGAGGGACATAGTCGTTGTT+TGG | 0.383794 | tig0026647:+63689 | Msa1430360:CDS |
| ACCTTCTTCCAAATATACTT+TGG | 0.398759 | tig0026647:-63330 | None:intergenic |
| TCCAAAGTATATTTGGAAGA+AGG | 0.409048 | tig0026647:+63329 | Msa1430360:CDS |
| TGTAACAGCTAAGGAGGCCT+TGG | 0.418766 | tig0026647:+63663 | Msa1430360:intron |
| CTAAGGAGGCCTTGGGGAGG+AGG | 0.419172 | tig0026647:+63671 | Msa1430360:CDS |
| TGATTCTAGCGCTAGAAAAC+AGG | 0.427368 | tig0026647:+63861 | Msa1430360:CDS |
| GATTCCGGACCAAATATTAG+TGG | 0.445624 | tig0026647:-63772 | None:intergenic |
| GTAACAGCTAAGGAGGCCTT+GGG | 0.455565 | tig0026647:+63664 | Msa1430360:intron |
| TGCACCACTAATATTTGGTC+CGG | 0.502264 | tig0026647:+63768 | Msa1430360:CDS |
| GTTTGGAGAGGAACAATTCA+GGG | 0.508947 | tig0026647:+63706 | Msa1430360:CDS |
| GGACCAAATATTAGTGGTGC+AGG | 0.511094 | tig0026647:-63766 | None:intergenic |
| AAATATTGAAGTTAAAAGAA+AGG | 0.512857 | tig0026647:-63417 | None:intergenic |
| GAGTATGGAATCAAATTGGA+TGG | 0.512934 | tig0026647:+63454 | Msa1430360:CDS |
| TAAGGAGGCCTTGGGGAGGA+GGG | 0.516311 | tig0026647:+63672 | Msa1430360:CDS |
| AACTTAGTGGCAAAAGTAAG+TGG | 0.534655 | tig0026647:+63159 | Msa1430360:CDS |
| CTTTACACATCTGAAAACTC+AGG | 0.534710 | tig0026647:+63826 | Msa1430360:CDS |
| AACAATTCAGGGTTCTGAGT+GGG | 0.560505 | tig0026647:+63717 | Msa1430360:CDS |
| AGTATGGAATCAAATTGGAT+GGG | 0.577722 | tig0026647:+63455 | Msa1430360:CDS |
| AAAACATGGAGAGAACTTAG+TGG | 0.589573 | tig0026647:+63146 | Msa1430360:CDS |
| ATTATATGTAACAGCTAAGG+AGG | 0.589612 | tig0026647:+63657 | Msa1430360:intron |
| GACATAGTCGTTGTTTGGAG+AGG | 0.592838 | tig0026647:+63694 | Msa1430360:CDS |
| TTACGTAGGTCAATGTGTAA+AGG | 0.596130 | tig0026647:-63197 | None:intergenic |
| CTAGCGCTAGAATCATCTGA+TGG | 0.596192 | tig0026647:-63853 | None:intergenic |
| GACTATGTCCCTCCTCCCCA+AGG | 0.598380 | tig0026647:-63680 | None:intergenic |
| AGTGGCAAAAGTAAGTGGAA+AGG | 0.602358 | tig0026647:+63164 | Msa1430360:CDS |
| GTATGGAATCAAATTGGATG+GGG | 0.608289 | tig0026647:+63456 | Msa1430360:CDS |
| CTCAACATTACCTTCGTCAG+TGG | 0.608844 | tig0026647:-63492 | None:intergenic |
| CAGCTAAGGAGGCCTTGGGG+AGG | 0.642109 | tig0026647:+63668 | Msa1430360:intron |
| GTTGCTGTTGCCACTGACGA+AGG | 0.677744 | tig0026647:+63482 | Msa1430360:CDS |
| GAACAATTCAGGGTTCTGAG+TGG | 0.692237 | tig0026647:+63716 | Msa1430360:CDS |
| AATGTAGTAAGTACTTACGT+AGG | 0.694414 | tig0026647:-63211 | None:intergenic |
| TCAAATGTACAAATACACAA+CGG | 0.709239 | tig0026647:+63793 | Msa1430360:CDS |
| TAACAGCTAAGGAGGCCTTG+GGG | 0.746795 | tig0026647:+63665 | Msa1430360:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAAATTTTAATATTGATT+TGG | + | tig0026647:63741-63760 | Msa1430360:CDS | 10.0% |
| !!! | TCAAAATTTTAATATTGATT+TGG | + | tig0026647:63741-63760 | Msa1430360:CDS | 10.0% |
| !! | AAATATTGAAGTTAAAAGAA+AGG | - | tig0026647:63420-63439 | None:intergenic | 15.0% |
| !! | AAAAATAGAAACAAAAATTG+CGG | + | tig0026647:63524-63543 | Msa1430360:intron | 15.0% |
| !! | AAATATTGAAGTTAAAAGAA+AGG | - | tig0026647:63420-63439 | None:intergenic | 15.0% |
| !! | AAAAATAGAAACAAAAATTG+CGG | + | tig0026647:63524-63543 | Msa1430360:intron | 15.0% |
| !!! | TAATTGTCGTTATTCTAAAA+AGG | + | tig0026647:63298-63317 | Msa1430360:CDS | 20.0% |
| !!! | TTTCTTTTCCAAAGTATATT+TGG | + | tig0026647:63322-63341 | Msa1430360:CDS | 20.0% |
| !!! | TTTAACTTCAATATTTTCGA+AGG | + | tig0026647:63424-63443 | Msa1430360:CDS | 20.0% |
| !! | AAAATAGAAACAAAAATTGC+GGG | + | tig0026647:63525-63544 | Msa1430360:intron | 20.0% |
| !!! | TAATTGTCGTTATTCTAAAA+AGG | + | tig0026647:63298-63317 | Msa1430360:CDS | 20.0% |
| !!! | TTTCTTTTCCAAAGTATATT+TGG | + | tig0026647:63322-63341 | Msa1430360:CDS | 20.0% |
| !!! | TTTAACTTCAATATTTTCGA+AGG | + | tig0026647:63424-63443 | Msa1430360:CDS | 20.0% |
| !! | AAAATAGAAACAAAAATTGC+GGG | + | tig0026647:63525-63544 | Msa1430360:intron | 20.0% |
| ! | ACAATTATATGTAACAGCTA+AGG | + | tig0026647:63654-63673 | Msa1430360:intron | 25.0% |
| ! | TGTATTTGTACATTTGATTC+CGG | - | tig0026647:63790-63809 | None:intergenic | 25.0% |
| ! | TCAAATGTACAAATACACAA+CGG | + | tig0026647:63793-63812 | Msa1430360:CDS | 25.0% |
| ! | ACAATTATATGTAACAGCTA+AGG | + | tig0026647:63654-63673 | Msa1430360:intron | 25.0% |
| ! | TGTATTTGTACATTTGATTC+CGG | - | tig0026647:63790-63809 | None:intergenic | 25.0% |
| ! | TCAAATGTACAAATACACAA+CGG | + | tig0026647:63793-63812 | Msa1430360:CDS | 25.0% |
| AAGTAAGTGGAAAGGTTTAT+TGG | + | tig0026647:63172-63191 | Msa1430360:CDS | 30.0% | |
| AATGTAGTAAGTACTTACGT+AGG | - | tig0026647:63214-63233 | None:intergenic | 30.0% | |
| CGTAAGTACTTACTACATTA+TGG | + | tig0026647:63215-63234 | Msa1430360:CDS | 30.0% | |
| TCCAAAGTATATTTGGAAGA+AGG | + | tig0026647:63329-63348 | Msa1430360:CDS | 30.0% | |
| ACCTTCTTCCAAATATACTT+TGG | - | tig0026647:63333-63352 | None:intergenic | 30.0% | |
| TTGGTCACAGAATACTTATA+AGG | - | tig0026647:63359-63378 | None:intergenic | 30.0% | |
| GGATGTTGCATACAAATATT+TGG | - | tig0026647:63378-63397 | None:intergenic | 30.0% | |
| AGTATGGAATCAAATTGGAT+GGG | + | tig0026647:63455-63474 | Msa1430360:CDS | 30.0% | |
| ATTATATGTAACAGCTAAGG+AGG | + | tig0026647:63657-63676 | Msa1430360:intron | 30.0% | |
| ! | TGAGTTTTCAGATGTGTAAA+GGG | - | tig0026647:63827-63846 | None:intergenic | 30.0% |
| AAGTAAGTGGAAAGGTTTAT+TGG | + | tig0026647:63172-63191 | Msa1430360:CDS | 30.0% | |
| AATGTAGTAAGTACTTACGT+AGG | - | tig0026647:63214-63233 | None:intergenic | 30.0% | |
| CGTAAGTACTTACTACATTA+TGG | + | tig0026647:63215-63234 | Msa1430360:CDS | 30.0% | |
| TCCAAAGTATATTTGGAAGA+AGG | + | tig0026647:63329-63348 | Msa1430360:CDS | 30.0% | |
| ACCTTCTTCCAAATATACTT+TGG | - | tig0026647:63333-63352 | None:intergenic | 30.0% | |
| TTGGTCACAGAATACTTATA+AGG | - | tig0026647:63359-63378 | None:intergenic | 30.0% | |
| GGATGTTGCATACAAATATT+TGG | - | tig0026647:63378-63397 | None:intergenic | 30.0% | |
| AGTATGGAATCAAATTGGAT+GGG | + | tig0026647:63455-63474 | Msa1430360:CDS | 30.0% | |
| ATTATATGTAACAGCTAAGG+AGG | + | tig0026647:63657-63676 | Msa1430360:intron | 30.0% | |
| ! | TGAGTTTTCAGATGTGTAAA+GGG | - | tig0026647:63827-63846 | None:intergenic | 30.0% |
| AAAACATGGAGAGAACTTAG+TGG | + | tig0026647:63146-63165 | Msa1430360:CDS | 35.0% | |
| AACTTAGTGGCAAAAGTAAG+TGG | + | tig0026647:63159-63178 | Msa1430360:CDS | 35.0% | |
| TTACGTAGGTCAATGTGTAA+AGG | - | tig0026647:63200-63219 | None:intergenic | 35.0% | |
| !! | GAAAAAGCATCTAAGTATGC+AGG | + | tig0026647:63275-63294 | Msa1430360:CDS | 35.0% |
| ! | CAATATTTTCGAAGGATGCT+TGG | + | tig0026647:63432-63451 | Msa1430360:CDS | 35.0% |
| CTTGGAGTATGGAATCAAAT+TGG | + | tig0026647:63450-63469 | Msa1430360:CDS | 35.0% | |
| GAGTATGGAATCAAATTGGA+TGG | + | tig0026647:63454-63473 | Msa1430360:CDS | 35.0% | |
| GTATGGAATCAAATTGGATG+GGG | + | tig0026647:63456-63475 | Msa1430360:CDS | 35.0% | |
| ! | CTGAGTTTTCAGATGTGTAA+AGG | - | tig0026647:63828-63847 | None:intergenic | 35.0% |
| CTTTACACATCTGAAAACTC+AGG | + | tig0026647:63826-63845 | Msa1430360:CDS | 35.0% | |
| AAAACATGGAGAGAACTTAG+TGG | + | tig0026647:63146-63165 | Msa1430360:CDS | 35.0% | |
| AACTTAGTGGCAAAAGTAAG+TGG | + | tig0026647:63159-63178 | Msa1430360:CDS | 35.0% | |
| TTACGTAGGTCAATGTGTAA+AGG | - | tig0026647:63200-63219 | None:intergenic | 35.0% | |
| !! | GAAAAAGCATCTAAGTATGC+AGG | + | tig0026647:63275-63294 | Msa1430360:CDS | 35.0% |
| ! | CAATATTTTCGAAGGATGCT+TGG | + | tig0026647:63432-63451 | Msa1430360:CDS | 35.0% |
| CTTGGAGTATGGAATCAAAT+TGG | + | tig0026647:63450-63469 | Msa1430360:CDS | 35.0% | |
| GAGTATGGAATCAAATTGGA+TGG | + | tig0026647:63454-63473 | Msa1430360:CDS | 35.0% | |
| GTATGGAATCAAATTGGATG+GGG | + | tig0026647:63456-63475 | Msa1430360:CDS | 35.0% | |
| ! | CTGAGTTTTCAGATGTGTAA+AGG | - | tig0026647:63828-63847 | None:intergenic | 35.0% |
| CTTTACACATCTGAAAACTC+AGG | + | tig0026647:63826-63845 | Msa1430360:CDS | 35.0% | |
| TGGGTAGCATAGCAAAAACA+TGG | + | tig0026647:63132-63151 | Msa1430360:CDS | 40.0% | |
| AGTGGCAAAAGTAAGTGGAA+AGG | + | tig0026647:63164-63183 | Msa1430360:CDS | 40.0% | |
| TGTTTGGAGAGGAACAATTC+AGG | + | tig0026647:63705-63724 | Msa1430360:CDS | 40.0% | |
| GTTTGGAGAGGAACAATTCA+GGG | + | tig0026647:63706-63725 | Msa1430360:CDS | 40.0% | |
| !! | AACAATTCAGGGTTCTGAGT+GGG | + | tig0026647:63717-63736 | Msa1430360:CDS | 40.0% |
| GATCCTGCACCACTAATATT+TGG | + | tig0026647:63763-63782 | Msa1430360:CDS | 40.0% | |
| TGCACCACTAATATTTGGTC+CGG | + | tig0026647:63768-63787 | Msa1430360:CDS | 40.0% | |
| GATTCCGGACCAAATATTAG+TGG | - | tig0026647:63775-63794 | None:intergenic | 40.0% | |
| TGGGTAGCATAGCAAAAACA+TGG | + | tig0026647:63132-63151 | Msa1430360:CDS | 40.0% | |
| AGTGGCAAAAGTAAGTGGAA+AGG | + | tig0026647:63164-63183 | Msa1430360:CDS | 40.0% | |
| TGTTTGGAGAGGAACAATTC+AGG | + | tig0026647:63705-63724 | Msa1430360:CDS | 40.0% | |
| GTTTGGAGAGGAACAATTCA+GGG | + | tig0026647:63706-63725 | Msa1430360:CDS | 40.0% | |
| !! | AACAATTCAGGGTTCTGAGT+GGG | + | tig0026647:63717-63736 | Msa1430360:CDS | 40.0% |
| GATCCTGCACCACTAATATT+TGG | + | tig0026647:63763-63782 | Msa1430360:CDS | 40.0% | |
| TGCACCACTAATATTTGGTC+CGG | + | tig0026647:63768-63787 | Msa1430360:CDS | 40.0% | |
| GATTCCGGACCAAATATTAG+TGG | - | tig0026647:63775-63794 | None:intergenic | 40.0% | |
| TTCGAAGGATGCTTGGAGTA+TGG | + | tig0026647:63439-63458 | Msa1430360:CDS | 45.0% | |
| CTCAACATTACCTTCGTCAG+TGG | - | tig0026647:63495-63514 | None:intergenic | 45.0% | |
| GACATAGTCGTTGTTTGGAG+AGG | + | tig0026647:63694-63713 | Msa1430360:CDS | 45.0% | |
| !! | GAACAATTCAGGGTTCTGAG+TGG | + | tig0026647:63716-63735 | Msa1430360:CDS | 45.0% |
| GGACCAAATATTAGTGGTGC+AGG | - | tig0026647:63769-63788 | None:intergenic | 45.0% | |
| CTAGCGCTAGAATCATCTGA+TGG | - | tig0026647:63856-63875 | None:intergenic | 45.0% | |
| TTCGAAGGATGCTTGGAGTA+TGG | + | tig0026647:63439-63458 | Msa1430360:CDS | 45.0% | |
| CTCAACATTACCTTCGTCAG+TGG | - | tig0026647:63495-63514 | None:intergenic | 45.0% | |
| GACATAGTCGTTGTTTGGAG+AGG | + | tig0026647:63694-63713 | Msa1430360:CDS | 45.0% | |
| !! | GAACAATTCAGGGTTCTGAG+TGG | + | tig0026647:63716-63735 | Msa1430360:CDS | 45.0% |
| GGACCAAATATTAGTGGTGC+AGG | - | tig0026647:63769-63788 | None:intergenic | 45.0% | |
| CTAGCGCTAGAATCATCTGA+TGG | - | tig0026647:63856-63875 | None:intergenic | 45.0% | |
| GGCTGCACTATCACTTGCTT+TGG | - | tig0026647:63399-63418 | None:intergenic | 50.0% | |
| TGTAACAGCTAAGGAGGCCT+TGG | + | tig0026647:63663-63682 | Msa1430360:intron | 50.0% | |
| GTAACAGCTAAGGAGGCCTT+GGG | + | tig0026647:63664-63683 | Msa1430360:intron | 50.0% | |
| TAACAGCTAAGGAGGCCTTG+GGG | + | tig0026647:63665-63684 | Msa1430360:intron | 50.0% | |
| GGAGGGACATAGTCGTTGTT+TGG | + | tig0026647:63689-63708 | Msa1430360:CDS | 50.0% | |
| GGCTGCACTATCACTTGCTT+TGG | - | tig0026647:63399-63418 | None:intergenic | 50.0% | |
| TGTAACAGCTAAGGAGGCCT+TGG | + | tig0026647:63663-63682 | Msa1430360:intron | 50.0% | |
| GTAACAGCTAAGGAGGCCTT+GGG | + | tig0026647:63664-63683 | Msa1430360:intron | 50.0% | |
| TAACAGCTAAGGAGGCCTTG+GGG | + | tig0026647:63665-63684 | Msa1430360:intron | 50.0% | |
| GGAGGGACATAGTCGTTGTT+TGG | + | tig0026647:63689-63708 | Msa1430360:CDS | 50.0% | |
| ! | GTTGCTGTTGCCACTGACGA+AGG | + | tig0026647:63482-63501 | Msa1430360:CDS | 55.0% |
| ! | GTTGCTGTTGCCACTGACGA+AGG | + | tig0026647:63482-63501 | Msa1430360:CDS | 55.0% |
| TAAGGAGGCCTTGGGGAGGA+GGG | + | tig0026647:63672-63691 | Msa1430360:CDS | 60.0% | |
| GACTATGTCCCTCCTCCCCA+AGG | - | tig0026647:63683-63702 | None:intergenic | 60.0% | |
| TAAGGAGGCCTTGGGGAGGA+GGG | + | tig0026647:63672-63691 | Msa1430360:CDS | 60.0% | |
| GACTATGTCCCTCCTCCCCA+AGG | - | tig0026647:63683-63702 | None:intergenic | 60.0% | |
| CAGCTAAGGAGGCCTTGGGG+AGG | + | tig0026647:63668-63687 | Msa1430360:intron | 65.0% | |
| CTAAGGAGGCCTTGGGGAGG+AGG | + | tig0026647:63671-63690 | Msa1430360:CDS | 65.0% | |
| CAGCTAAGGAGGCCTTGGGG+AGG | + | tig0026647:63668-63687 | Msa1430360:intron | 65.0% | |
| CTAAGGAGGCCTTGGGGAGG+AGG | + | tig0026647:63671-63690 | Msa1430360:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026647 | gene | 63131 | 63882 | 63131 | ID=Msa1430360;Name=Msa1430360 |
| tig0026647 | mRNA | 63131 | 63882 | 63131 | ID=Msa1430360-mRNA-1;Parent=Msa1430360;Name=Msa1430360-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|1|1|1|2|0|195 |
| tig0026647 | exon | 63131 | 63503 | 63131 | ID=Msa1430360-mRNA-1:exon:6961;Parent=Msa1430360-mRNA-1 |
| tig0026647 | exon | 63671 | 63882 | 63671 | ID=Msa1430360-mRNA-1:exon:6962;Parent=Msa1430360-mRNA-1 |
| tig0026647 | CDS | 63131 | 63503 | 63131 | ID=Msa1430360-mRNA-1:cds;Parent=Msa1430360-mRNA-1 |
| tig0026647 | CDS | 63671 | 63882 | 63671 | ID=Msa1430360-mRNA-1:cds;Parent=Msa1430360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
