Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1015930 | PNY18000.1 | 78.431 | 51 | 11 | 0 | 1 | 51 | 607 | 657 | 1.22e-18 | 89.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1015930 | A0A2K3PRU0 | 78.431 | 51 | 11 | 0 | 1 | 51 | 607 | 657 | 5.83e-19 | 89.7 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0132550 | Msa1015930 | 0.839208 | 1.818122e-57 | -8.615850e-47 |
| Msa0410170 | Msa1015930 | 0.842934 | 1.909629e-58 | -8.615850e-47 |
| Msa1015930 | Msa1223290 | 0.815267 | 1.009281e-51 | -8.615850e-47 |
| Msa1015930 | Msa1367250 | 0.814797 | 1.282962e-51 | -8.615850e-47 |
| Msa1015930 | Msa1420460 | 0.843491 | 1.356021e-58 | -8.615850e-47 |
| Msa1015930 | Msa1430360 | 0.915767 | 3.979506e-85 | -8.615850e-47 |
| Msa1015930 | Msa1438540 | 0.832406 | 9.626606e-56 | -8.615850e-47 |
| Msa0500680 | Msa1015930 | 0.801831 | 7.476968e-49 | -8.615850e-47 |
| Msa0887620 | Msa1015930 | 0.834499 | 2.894022e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1015930 | MtrunA17_Chr7g0236571 | 76.471 | 51 | 12 | 0 | 1 | 51 | 600 | 650 | 7.35e-22 | 87.4 |
| Msa1015930 | MtrunA17_Chr7g0236471 | 76.471 | 51 | 12 | 0 | 1 | 51 | 605 | 655 | 3.44e-20 | 82.4 |
| Msa1015930 | MtrunA17_Chr7g0236551 | 76.471 | 51 | 12 | 0 | 1 | 51 | 753 | 803 | 5.17e-20 | 82.0 |
| Msa1015930 | MtrunA17_Chr7g0236341 | 78.431 | 51 | 7 | 1 | 1 | 51 | 782 | 828 | 1.82e-19 | 80.5 |
| Msa1015930 | MtrunA17_Chr7g0236511 | 72.549 | 51 | 14 | 0 | 1 | 51 | 745 | 795 | 9.88e-19 | 78.6 |
| Msa1015930 | MtrunA17_Chr7g0236531 | 70.588 | 51 | 15 | 0 | 1 | 51 | 303 | 353 | 3.83e-18 | 76.3 |
| Msa1015930 | MtrunA17_Chr7g0236691 | 68.627 | 51 | 16 | 0 | 1 | 51 | 765 | 815 | 2.85e-16 | 71.2 |
| Msa1015930 | MtrunA17_Chr7g0236201 | 59.615 | 52 | 20 | 1 | 1 | 51 | 734 | 785 | 2.60e-14 | 65.9 |
| Msa1015930 | MtrunA17_Chr7g0236641 | 60.784 | 51 | 20 | 0 | 1 | 51 | 790 | 840 | 5.21e-14 | 65.1 |
| Msa1015930 | MtrunA17_Chr7g0236161 | 71.053 | 38 | 11 | 0 | 1 | 38 | 715 | 752 | 2.57e-13 | 63.2 |
| Msa1015930 | MtrunA17_Chr7g0236561 | 62.745 | 51 | 18 | 1 | 1 | 51 | 770 | 819 | 2.90e-13 | 62.8 |
| Msa1015930 | MtrunA17_Chr7g0236121 | 71.053 | 38 | 11 | 0 | 1 | 38 | 768 | 805 | 3.39e-13 | 62.8 |
| Msa1015930 | MtrunA17_Chr7g0236651 | 68.182 | 44 | 14 | 0 | 1 | 44 | 750 | 793 | 6.64e-13 | 62.0 |
| Msa1015930 | MtrunA17_Chr4g0055011 | 60.784 | 51 | 20 | 0 | 1 | 51 | 336 | 386 | 1.92e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 13 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAACATATTCTCCATC+AGG | 0.408760 | 7_1:+30842730 | None:intergenic |
| ATGATTGTCAATCAAATTAG+TGG | 0.418818 | 7_1:+30840260 | None:intergenic |
| CAAGAATAACATGTAACAAA+TGG | 0.464556 | 7_1:+30840321 | None:intergenic |
| AGGATGAATGCAGGTTTACT+AGG | 0.474164 | 7_1:+30842750 | None:intergenic |
| TCCACATACGTCTGTAATAC+CGG | 0.478739 | 7_1:+30842662 | None:intergenic |
| ATATGTTCTATTAATACTGC+CGG | 0.533049 | 7_1:-30842681 | Msa1015930:CDS |
| TAAACCTGCATTCATCCTGA+TGG | 0.539083 | 7_1:-30842745 | Msa1015930:CDS |
| TTCTCCATCAGGATGAATGC+AGG | 0.539314 | 7_1:+30842741 | None:intergenic |
| AATGCAGGTTTACTAGGAGG+AGG | 0.559449 | 7_1:+30842756 | None:intergenic |
| GAATAACATGTAACAAATGG+AGG | 0.569599 | 7_1:+30840324 | None:intergenic |
| AATAACATGTAACAAATGGA+GGG | 0.612635 | 7_1:+30840325 | None:intergenic |
| AATTTCTATGCTTAACAGTG+AGG | 0.622691 | 7_1:-30842790 | Msa1015930:CDS |
| ATGAATGCAGGTTTACTAGG+AGG | 0.660515 | 7_1:+30842753 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTCAATTAATATATATAT+TGG | - | chr7_1:30841695-30841714 | Msa1015930:intron | 10.0% |
| !! | AAAAATAATCAAAATTATTG+TGG | + | chr7_1:30841886-30841905 | None:intergenic | 10.0% |
| !!! | ATAATAAAGCAAAATAATTT+TGG | + | chr7_1:30842094-30842113 | None:intergenic | 10.0% |
| !!! | GTGATAATTTAACTTTATTT+AGG | - | chr7_1:30841197-30841216 | Msa1015930:intron | 15.0% |
| !!! | TAATTTTGTTAAATGGAATA+TGG | - | chr7_1:30841325-30841344 | Msa1015930:intron | 15.0% |
| !!! | GATTTTCATAACTAATTTTA+AGG | + | chr7_1:30841384-30841403 | None:intergenic | 15.0% |
| !! | TAGATAAATAACACAAACAA+TGG | + | chr7_1:30840645-30840664 | None:intergenic | 20.0% |
| !! | ATTATCATGTAGACTATATA+TGG | - | chr7_1:30840683-30840702 | Msa1015930:intron | 20.0% |
| !! | GTTGTTATCTTCATATTATA+AGG | + | chr7_1:30841033-30841052 | None:intergenic | 20.0% |
| !! | TGAAATCATATGAAAAAGTA+AGG | + | chr7_1:30841298-30841317 | None:intergenic | 20.0% |
| !!! | AGCAAACTAATTTTGTTAAA+TGG | - | chr7_1:30841318-30841337 | Msa1015930:intron | 20.0% |
| !!! | ATTTTTTATTACACCAATTC+AGG | - | chr7_1:30841723-30841742 | Msa1015930:intron | 20.0% |
| !!! | GCAACTTTTAAAAAAAATGA+AGG | + | chr7_1:30842350-30842369 | None:intergenic | 20.0% |
| !! | TTTAGATCTGTAATCTAAAA+AGG | + | chr7_1:30842479-30842498 | None:intergenic | 20.0% |
| !! | CTAAAGAAAAAACATAATTG+AGG | + | chr7_1:30842726-30842745 | None:intergenic | 20.0% |
| !!! | CTCAATTATGTTTTTTCTTT+AGG | - | chr7_1:30842724-30842743 | Msa1015930:CDS | 20.0% |
| !! | TTTGATGGAAATAAAAATTC+TGG | + | chr7_1:30842783-30842802 | None:intergenic | 20.0% |
| ! | ATATGTTCTATTAATACTGC+CGG | - | chr7_1:30840391-30840410 | Msa1015930:intron | 25.0% |
| ! | TTTGTGAAAAAACAAAACTC+TGG | - | chr7_1:30840500-30840519 | Msa1015930:intron | 25.0% |
| ! | ACATAAAGACATGTATAGTA+TGG | - | chr7_1:30840539-30840558 | Msa1015930:intron | 25.0% |
| ! | AATAACACAAACAATGGTAA+AGG | + | chr7_1:30840639-30840658 | None:intergenic | 25.0% |
| ! | ATAGTATAGTTTCTCTTTAG+AGG | - | chr7_1:30840718-30840737 | Msa1015930:intron | 25.0% |
| ! | TAGTATAGTTTCTCTTTAGA+GGG | - | chr7_1:30840719-30840738 | Msa1015930:intron | 25.0% |
| !!! | AGAAAATTTTGTGTTGATTG+TGG | - | chr7_1:30840818-30840837 | Msa1015930:intron | 25.0% |
| ! | TAATATGAAGATAACAACAG+TGG | - | chr7_1:30841035-30841054 | Msa1015930:intron | 25.0% |
| !!! | TTCTGAATATCCGTTTTATT+CGG | - | chr7_1:30841163-30841182 | Msa1015930:intron | 25.0% |
| ! | TATTTGTCAACCGAATAAAA+CGG | + | chr7_1:30841176-30841195 | None:intergenic | 25.0% |
| ! | AAATGGAATATGGAAGAATT+CGG | - | chr7_1:30841335-30841354 | Msa1015930:intron | 25.0% |
| ! | TTCAAATCAATTACAGCATT+CGG | - | chr7_1:30841404-30841423 | Msa1015930:intron | 25.0% |
| !! | CTTCTTTAGGAGAAATAATA+GGG | - | chr7_1:30841448-30841467 | Msa1015930:intron | 25.0% |
| ! | AAGTTACCAATTCAATATCT+TGG | - | chr7_1:30841483-30841502 | Msa1015930:intron | 25.0% |
| ! | AGTTACCAATTCAATATCTT+GGG | - | chr7_1:30841484-30841503 | Msa1015930:intron | 25.0% |
| !! | TGTCTACATTTTAAGCATAA+AGG | - | chr7_1:30841669-30841688 | Msa1015930:intron | 25.0% |
| !! | TCTTTTGATAAAAATAGCAG+AGG | - | chr7_1:30842135-30842154 | Msa1015930:intron | 25.0% |
| !! | CTTTTGATAAAAATAGCAGA+GGG | - | chr7_1:30842136-30842155 | Msa1015930:intron | 25.0% |
| ! | ATCTAAAAAGGATCACAATT+AGG | + | chr7_1:30842467-30842486 | None:intergenic | 25.0% |
| ! | GAGCAAATCAACATTATTTA+TGG | - | chr7_1:30842509-30842528 | Msa1015930:intron | 25.0% |
| ! | TCAACATTATTTATGGTACA+TGG | - | chr7_1:30842516-30842535 | Msa1015930:intron | 25.0% |
| !! | TTTTGTAACATTTCTTGCTA+TGG | - | chr7_1:30842573-30842592 | Msa1015930:intron | 25.0% |
| ! | TTGTGACATTGTTTAAATCT+AGG | - | chr7_1:30842598-30842617 | Msa1015930:intron | 25.0% |
| ! | AATAACATGTAACAAATGGA+GGG | + | chr7_1:30842750-30842769 | None:intergenic | 25.0% |
| ! | CAAGAATAACATGTAACAAA+TGG | + | chr7_1:30842754-30842773 | None:intergenic | 25.0% |
| AATTTCTATGCTTAACAGTG+AGG | - | chr7_1:30840282-30840301 | Msa1015930:CDS | 30.0% | |
| AATTCAACATATTCTCCATC+AGG | + | chr7_1:30840345-30840364 | None:intergenic | 30.0% | |
| ! | CATATACTTCGATTTTCTTC+AGG | + | chr7_1:30840376-30840395 | None:intergenic | 30.0% |
| GAAAAAACAAAACTCTGGTT+TGG | - | chr7_1:30840505-30840524 | Msa1015930:intron | 30.0% | |
| ! | TACGACAGCATTGAAAATTA+TGG | - | chr7_1:30840583-30840602 | Msa1015930:intron | 30.0% |
| AGAAACTATACTATAGACCA+TGG | + | chr7_1:30840712-30840731 | None:intergenic | 30.0% | |
| GAACAAAATCTGGAAAGTTA+GGG | - | chr7_1:30840904-30840923 | Msa1015930:intron | 30.0% | |
| TAATATAACCTCCACGTATA+AGG | - | chr7_1:30840981-30841000 | Msa1015930:intron | 30.0% | |
| !!! | AACAGTGGAAGTTTTTAGTT+TGG | - | chr7_1:30841050-30841069 | Msa1015930:intron | 30.0% |
| !!! | ACAGTGGAAGTTTTTAGTTT+GGG | - | chr7_1:30841051-30841070 | Msa1015930:intron | 30.0% |
| ! | TTAACTTTATTTAGGAGCTG+AGG | - | chr7_1:30841205-30841224 | Msa1015930:intron | 30.0% |
| TATTTCTCCTAAAGAAGCAA+TGG | + | chr7_1:30841445-30841464 | None:intergenic | 30.0% | |
| ! | GCTTCTTTAGGAGAAATAAT+AGG | - | chr7_1:30841447-30841466 | Msa1015930:intron | 30.0% |
| CAAAACCCAAGATATTGAAT+TGG | + | chr7_1:30841492-30841511 | None:intergenic | 30.0% | |
| ! | CAATTCAATATCTTGGGTTT+TGG | - | chr7_1:30841490-30841509 | Msa1015930:intron | 30.0% |
| CAAGGATTATGTTGAAAGTT+TGG | - | chr7_1:30841522-30841541 | Msa1015930:intron | 30.0% | |
| AGACAATCGAGTATTAAAGA+TGG | + | chr7_1:30841654-30841673 | None:intergenic | 30.0% | |
| CATTGTTGTAAAAACATGCT+TGG | + | chr7_1:30842273-30842292 | None:intergenic | 30.0% | |
| !! | CAAGCATGTTTTTACAACAA+TGG | - | chr7_1:30842271-30842290 | Msa1015930:intron | 30.0% |
| CTTGAGAAATCTGTATTTGA+TGG | - | chr7_1:30842304-30842323 | Msa1015930:intron | 30.0% | |
| ATTCAAATCCTATGATGCAT+AGG | + | chr7_1:30842410-30842429 | None:intergenic | 30.0% | |
| CTCATTAAAAACTCCATTTG+TGG | + | chr7_1:30842646-30842665 | None:intergenic | 30.0% | |
| ! | CACAAATGGAGTTTTTAATG+AGG | - | chr7_1:30842644-30842663 | Msa1015930:intron | 30.0% |
| GAATAACATGTAACAAATGG+AGG | + | chr7_1:30842751-30842770 | None:intergenic | 30.0% | |
| !!! | TAGTGGAGTTGATATTTTGA+TGG | + | chr7_1:30842798-30842817 | None:intergenic | 30.0% |
| ACAAACAATGGTAAAGGCAA+CGG | + | chr7_1:30840633-30840652 | None:intergenic | 35.0% | |
| AGTGTAAGTGAGCATTTGTA+GGG | - | chr7_1:30840841-30840860 | Msa1015930:intron | 35.0% | |
| CGAACAAAATCTGGAAAGTT+AGG | - | chr7_1:30840903-30840922 | Msa1015930:intron | 35.0% | |
| !! | TATCTCAGTTGATGAATCGA+AGG | + | chr7_1:30840938-30840957 | None:intergenic | 35.0% |
| AAGTAAGGAATCCCATAGTT+GGG | + | chr7_1:30841283-30841302 | None:intergenic | 35.0% | |
| AAAGTAAGGAATCCCATAGT+TGG | + | chr7_1:30841284-30841303 | None:intergenic | 35.0% | |
| !! | AATATCTTGGGTTTTGGTCA+AGG | - | chr7_1:30841496-30841515 | Msa1015930:intron | 35.0% |
| CGAGTATTAAAGATGGTAAC+AGG | + | chr7_1:30841647-30841666 | None:intergenic | 35.0% | |
| !!! | TAGTTTTGATCTCTGAAGCA+TGG | - | chr7_1:30841915-30841934 | Msa1015930:intron | 35.0% |
| !!! | AGTTTTGATCTCTGAAGCAT+GGG | - | chr7_1:30841916-30841935 | Msa1015930:intron | 35.0% |
| ! | CAACATGATCATAGAAGTGT+GGG | - | chr7_1:30842187-30842206 | Msa1015930:intron | 35.0% |
| AATCCTATGATGCATAGGTA+CGG | + | chr7_1:30842405-30842424 | None:intergenic | 35.0% | |
| AAAAAGGATCACAATTAGGC+AGG | + | chr7_1:30842463-30842482 | None:intergenic | 35.0% | |
| ! | GCAGAATGATGGGAATAAAT+TGG | - | chr7_1:30842538-30842557 | Msa1015930:intron | 35.0% |
| !! | ATGGGAATAAATTGGCTTGT+TGG | - | chr7_1:30842546-30842565 | Msa1015930:intron | 35.0% |
| ATGAATGCAGGTTTACTAGG+AGG | + | chr7_1:30840322-30840341 | None:intergenic | 40.0% | |
| AGGATGAATGCAGGTTTACT+AGG | + | chr7_1:30840325-30840344 | None:intergenic | 40.0% | |
| TAAACCTGCATTCATCCTGA+TGG | - | chr7_1:30840327-30840346 | Msa1015930:CDS | 40.0% | |
| TCCACATACGTCTGTAATAC+CGG | + | chr7_1:30840413-30840432 | None:intergenic | 40.0% | |
| ATGTGGAAGATAGCACACTA+AGG | - | chr7_1:30840426-30840445 | Msa1015930:intron | 40.0% | |
| CACACTAAGGACTCTAACAA+GGG | - | chr7_1:30840439-30840458 | Msa1015930:intron | 40.0% | |
| TAGACTATATATGGCTGCCA+TGG | - | chr7_1:30840692-30840711 | Msa1015930:intron | 40.0% | |
| GAGTGTAAGTGAGCATTTGT+AGG | - | chr7_1:30840840-30840859 | Msa1015930:intron | 40.0% | |
| AAGATGTATGCCTTCGTTTC+TGG | - | chr7_1:30840868-30840887 | Msa1015930:intron | 40.0% | |
| ! | CAGATTTTGTTCGTGTGCAT+GGG | + | chr7_1:30840896-30840915 | None:intergenic | 40.0% |
| CAACAACACAACCTTATACG+TGG | + | chr7_1:30840995-30841014 | None:intergenic | 40.0% | |
| AGGTGCTCGATATTGGAAAA+AGG | - | chr7_1:30841121-30841140 | Msa1015930:intron | 40.0% | |
| GGTGCTCGATATTGGAAAAA+GGG | - | chr7_1:30841122-30841141 | Msa1015930:intron | 40.0% | |
| ! | ATTGGAAAAAGGGTGCAAAG+TGG | - | chr7_1:30841132-30841151 | Msa1015930:intron | 40.0% |
| ATTCATCAAAACCTTGAGGC+AGG | + | chr7_1:30841247-30841266 | None:intergenic | 40.0% | |
| GGCAATTCATCAAAACCTTG+AGG | + | chr7_1:30841251-30841270 | None:intergenic | 40.0% | |
| ! | TTTCGTGCCATTGCTTCTTT+AGG | - | chr7_1:30841435-30841454 | Msa1015930:intron | 40.0% |
| GGAGAAATAATAGGGTAGAG+AGG | - | chr7_1:30841456-30841475 | Msa1015930:intron | 40.0% | |
| CAGCATTACTGTACCTGAAT+TGG | + | chr7_1:30841739-30841758 | None:intergenic | 40.0% | |
| AACCAGTGTGTAATCTGTAG+TGG | - | chr7_1:30841803-30841822 | Msa1015930:intron | 40.0% | |
| ACCAGTGTGTAATCTGTAGT+GGG | - | chr7_1:30841804-30841823 | Msa1015930:intron | 40.0% | |
| !! | ACTTGTTGTTTCAGCGTAGT+TGG | - | chr7_1:30842035-30842054 | Msa1015930:intron | 40.0% |
| GCAACATGATCATAGAAGTG+TGG | - | chr7_1:30842186-30842205 | Msa1015930:intron | 40.0% | |
| AAAGTTGCCGTATTACGTAC+CGG | - | chr7_1:30842362-30842381 | Msa1015930:intron | 40.0% | |
| ATCCTATGATGCATAGGTAC+GGG | + | chr7_1:30842404-30842423 | None:intergenic | 40.0% | |
| TATGGTACATGGCAGAATGA+TGG | - | chr7_1:30842527-30842546 | Msa1015930:intron | 40.0% | |
| ATGGTACATGGCAGAATGAT+GGG | - | chr7_1:30842528-30842547 | Msa1015930:intron | 40.0% | |
| ! | AGCACTCTTTTCTCCACAAA+TGG | - | chr7_1:30842630-30842649 | Msa1015930:intron | 40.0% |
| AATGCAGGTTTACTAGGAGG+AGG | + | chr7_1:30840319-30840338 | None:intergenic | 45.0% | |
| TTCTCCATCAGGATGAATGC+AGG | + | chr7_1:30840334-30840353 | None:intergenic | 45.0% | |
| GCACACTAAGGACTCTAACA+AGG | - | chr7_1:30840438-30840457 | Msa1015930:intron | 45.0% | |
| ! | CCAGATTTTGTTCGTGTGCA+TGG | + | chr7_1:30840897-30840916 | None:intergenic | 45.0% |
| CCATGCACACGAACAAAATC+TGG | - | chr7_1:30840894-30840913 | Msa1015930:intron | 45.0% | |
| CAACACAACCTTATACGTGG+AGG | + | chr7_1:30840992-30841011 | None:intergenic | 45.0% | |
| ! | GAAAAAGGGTGCAAAGTGGT+TGG | - | chr7_1:30841136-30841155 | Msa1015930:intron | 45.0% |
| CCCATAGTTGGGAAAACACA+GGG | + | chr7_1:30841272-30841291 | None:intergenic | 45.0% | |
| ! | CCCTGTGTTTTCCCAACTAT+GGG | - | chr7_1:30841269-30841288 | Msa1015930:intron | 45.0% |
| TCCCATAGTTGGGAAAACAC+AGG | + | chr7_1:30841273-30841292 | None:intergenic | 45.0% | |
| CCAGTGTGTAATCTGTAGTG+GGG | - | chr7_1:30841805-30841824 | Msa1015930:intron | 45.0% | |
| ! | GTAGTGGGGACTTGTATTCT+TGG | - | chr7_1:30841819-30841838 | Msa1015930:intron | 45.0% |
| AAGCATGGGTACTCCAAACA+TGG | - | chr7_1:30841930-30841949 | Msa1015930:intron | 45.0% | |
| ! | CTCCAAACATGGAGAAGTAC+CGG | - | chr7_1:30841941-30841960 | Msa1015930:intron | 45.0% |
| TACCGGTACTTCTCCATGTT+TGG | + | chr7_1:30841946-30841965 | None:intergenic | 45.0% | |
| TACTGTACACGTACCCGATA+CGG | + | chr7_1:30841981-30842000 | None:intergenic | 45.0% | |
| GTTGGTACCGCAAAAACGTA+CGG | - | chr7_1:30842053-30842072 | Msa1015930:intron | 45.0% | |
| TTGGTACCGCAAAAACGTAC+GGG | - | chr7_1:30842054-30842073 | Msa1015930:intron | 45.0% | |
| !! | TACGGTACCGGTACGTAATA+CGG | + | chr7_1:30842372-30842391 | None:intergenic | 45.0% |
| GCCGGTATTACAGACGTATG+TGG | - | chr7_1:30840409-30840428 | Msa1015930:intron | 50.0% | |
| TGCATGGGTTCCAGAAACGA+AGG | + | chr7_1:30840881-30840900 | None:intergenic | 50.0% | |
| TTTCCCTGCCATTCCTCTTC+AGG | - | chr7_1:30841101-30841120 | Msa1015930:intron | 50.0% | |
| ATCGAGCACCTGAAGAGGAA+TGG | + | chr7_1:30841112-30841131 | None:intergenic | 50.0% | |
| CCAATATCGAGCACCTGAAG+AGG | + | chr7_1:30841117-30841136 | None:intergenic | 50.0% | |
| CCTCTTCAGGTGCTCGATAT+TGG | - | chr7_1:30841114-30841133 | Msa1015930:intron | 50.0% | |
| ! | GCCCTGTGTTTTCCCAACTA+TGG | - | chr7_1:30841268-30841287 | Msa1015930:intron | 50.0% |
| !! | GGGTTTTGGTCAAGGTCTCA+AGG | - | chr7_1:30841504-30841523 | Msa1015930:intron | 50.0% |
| CCCCACTACAGATTACACAC+TGG | + | chr7_1:30841808-30841827 | None:intergenic | 50.0% | |
| ACTGTACACGTACCCGATAC+GGG | + | chr7_1:30841980-30841999 | None:intergenic | 50.0% | |
| ! | TCAACGCCCGTACGTTTTTG+CGG | + | chr7_1:30842063-30842082 | None:intergenic | 50.0% |
| ! | GTATTACGTACCGGTACCGT+AGG | - | chr7_1:30842371-30842390 | Msa1015930:intron | 50.0% |
| TGCCCGTACCTATGCATCAT+AGG | - | chr7_1:30842399-30842418 | Msa1015930:intron | 50.0% | |
| GCACCTGAAGAGGAATGGCA+GGG | + | chr7_1:30841107-30841126 | None:intergenic | 55.0% | |
| AGCACCTGAAGAGGAATGGC+AGG | + | chr7_1:30841108-30841127 | None:intergenic | 55.0% | |
| !! | CATGGAGAAGTACCGGTAGC+AGG | - | chr7_1:30841948-30841967 | Msa1015930:intron | 55.0% |
| TAGCAGGTACGCACCCGTAT+CGG | - | chr7_1:30841964-30841983 | Msa1015930:intron | 55.0% | |
| AGGTACGGGCACAGTACCTA+CGG | + | chr7_1:30842390-30842409 | None:intergenic | 55.0% | |
| ACGCAGATGCACCTGCCTCA+AGG | - | chr7_1:30841233-30841252 | Msa1015930:intron | 60.0% | |
| TACGGGTGCGTACCTGCTAC+CGG | + | chr7_1:30841963-30841982 | None:intergenic | 60.0% | |
| AGCAGGTACGCACCCGTATC+GGG | - | chr7_1:30841965-30841984 | Msa1015930:intron | 60.0% | |
| GGGCACAGTACCTACGGTAC+CGG | + | chr7_1:30842384-30842403 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 30840271 | 30842823 | 30840271 | ID=Msa1015930;Name=Msa1015930 |
| chr7_1 | mRNA | 30840271 | 30842823 | 30840271 | ID=Msa1015930-mRNA-1;Parent=Msa1015930;Name=Msa1015930-mRNA-1;_AED=0.64;_eAED=0.64;_QI=0|0|0|0.5|1|1|2|0|76 |
| chr7_1 | exon | 30842671 | 30842823 | 30842671 | ID=Msa1015930-mRNA-1:exon:6176;Parent=Msa1015930-mRNA-1 |
| chr7_1 | exon | 30840271 | 30840348 | 30840271 | ID=Msa1015930-mRNA-1:exon:6175;Parent=Msa1015930-mRNA-1 |
| chr7_1 | CDS | 30842671 | 30842823 | 30842671 | ID=Msa1015930-mRNA-1:cds;Parent=Msa1015930-mRNA-1 |
| chr7_1 | CDS | 30840271 | 30840348 | 30840271 | ID=Msa1015930-mRNA-1:cds;Parent=Msa1015930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
