Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435520 | XP_003604043.1 | 98.077 | 156 | 3 | 0 | 1 | 156 | 1 | 156 | 1.07e-111 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435520 | sp|Q9SZN7|HIP26_ARATH | 75.641 | 156 | 35 | 1 | 1 | 156 | 1 | 153 | 5.36e-83 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435520 | G7J8I5 | 98.077 | 156 | 3 | 0 | 1 | 156 | 1 | 156 | 5.13e-112 | 323 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1364940 | Msa1435520 | 0.950429 | 1.677706e-108 | -8.615850e-47 |
| Msa1367490 | Msa1435520 | 0.943372 | 1.354558e-102 | -8.615850e-47 |
| Msa1417570 | Msa1435520 | 0.920524 | 1.146817e-87 | -8.615850e-47 |
| Msa1424620 | Msa1435520 | 0.948238 | 1.403134e-106 | -8.615850e-47 |
| Msa0524290 | Msa1435520 | 0.952715 | 1.331152e-110 | -8.615850e-47 |
| Msa0524400 | Msa1435520 | 0.950821 | 7.446346e-109 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435520 | MtrunA17_Chr3g0145621 | 98.077 | 156 | 3 | 0 | 1 | 156 | 1 | 156 | 9.87e-116 | 323 |
| Msa1435520 | MtrunA17_Chr4g0036931 | 78.616 | 159 | 28 | 3 | 1 | 156 | 1 | 156 | 9.10e-88 | 253 |
| Msa1435520 | MtrunA17_Chr5g0405811 | 61.491 | 161 | 53 | 3 | 1 | 156 | 1 | 157 | 7.99e-66 | 197 |
| Msa1435520 | MtrunA17_Chr1g0160201 | 53.205 | 156 | 64 | 3 | 1 | 156 | 1 | 147 | 1.16e-53 | 166 |
| Msa1435520 | MtrunA17_Chr8g0382721 | 51.613 | 155 | 69 | 3 | 2 | 156 | 5 | 153 | 4.73e-49 | 155 |
| Msa1435520 | MtrunA17_Chr3g0124411 | 51.923 | 156 | 66 | 4 | 2 | 156 | 5 | 152 | 5.64e-49 | 154 |
| Msa1435520 | MtrunA17_Chr5g0407821 | 47.436 | 156 | 71 | 3 | 1 | 156 | 1 | 145 | 1.33e-45 | 146 |
| Msa1435520 | MtrunA17_Chr6g0448861 | 45.062 | 162 | 76 | 3 | 1 | 156 | 1 | 155 | 4.47e-45 | 145 |
| Msa1435520 | MtrunA17_Chr7g0251491 | 48.077 | 156 | 71 | 3 | 1 | 156 | 25 | 170 | 7.25e-45 | 145 |
| Msa1435520 | MtrunA17_Chr3g0115421 | 47.742 | 155 | 71 | 3 | 2 | 156 | 5 | 149 | 2.35e-42 | 137 |
| Msa1435520 | MtrunA17_Chr5g0422891 | 37.821 | 156 | 88 | 3 | 1 | 156 | 1 | 147 | 9.52e-35 | 118 |
| Msa1435520 | MtrunA17_Chr2g0325601 | 36.429 | 140 | 77 | 3 | 28 | 156 | 4 | 142 | 3.42e-22 | 86.3 |
| Msa1435520 | MtrunA17_Chr1g0189221 | 42.157 | 102 | 54 | 2 | 25 | 122 | 52 | 152 | 1.56e-20 | 83.2 |
| Msa1435520 | MtrunA17_Chr6g0471231 | 35.664 | 143 | 71 | 6 | 28 | 156 | 5 | 140 | 1.33e-17 | 74.3 |
| Msa1435520 | MtrunA17_Chr3g0094841 | 34.586 | 133 | 74 | 3 | 26 | 156 | 116 | 237 | 3.61e-14 | 67.4 |
| Msa1435520 | MtrunA17_Chr7g0218981 | 48.485 | 66 | 33 | 1 | 26 | 91 | 4 | 68 | 3.85e-14 | 65.1 |
| Msa1435520 | MtrunA17_Chr1g0192131 | 36.765 | 68 | 43 | 0 | 25 | 92 | 14 | 81 | 2.16e-12 | 63.5 |
| Msa1435520 | MtrunA17_Chr1g0198341 | 45.455 | 66 | 35 | 1 | 26 | 91 | 4 | 68 | 4.08e-12 | 58.5 |
| Msa1435520 | MtrunA17_Chr7g0269081 | 36.765 | 68 | 42 | 1 | 24 | 91 | 20 | 86 | 5.85e-12 | 62.0 |
| Msa1435520 | MtrunA17_Chr7g0272571 | 42.857 | 63 | 35 | 1 | 30 | 92 | 37 | 98 | 8.64e-12 | 61.6 |
| Msa1435520 | MtrunA17_Chr6g0460361 | 37.273 | 110 | 61 | 6 | 52 | 156 | 4 | 110 | 9.38e-12 | 58.5 |
| Msa1435520 | MtrunA17_Chr3g0111541 | 41.538 | 65 | 37 | 1 | 26 | 90 | 12 | 75 | 2.50e-11 | 59.3 |
| Msa1435520 | MtrunA17_Chr3g0080011 | 55.769 | 52 | 21 | 2 | 1 | 52 | 25 | 74 | 2.61e-11 | 57.0 |
| Msa1435520 | MtrunA17_Chr1g0208301 | 39.706 | 68 | 40 | 1 | 24 | 91 | 11 | 77 | 2.72e-11 | 60.5 |
| Msa1435520 | MtrunA17_Chr8g0386231 | 44.776 | 67 | 36 | 1 | 30 | 95 | 55 | 121 | 8.23e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435520 | AT4G38580.1 | 75.641 | 156 | 35 | 1 | 1 | 156 | 1 | 153 | 5.45e-84 | 244 |
| Msa1435520 | AT4G38580.2 | 75.641 | 156 | 35 | 1 | 1 | 156 | 1 | 153 | 5.45e-84 | 244 |
| Msa1435520 | AT4G35060.1 | 70.064 | 157 | 42 | 3 | 1 | 156 | 1 | 153 | 8.13e-76 | 223 |
| Msa1435520 | AT5G66110.3 | 66.667 | 138 | 44 | 1 | 19 | 156 | 12 | 147 | 1.74e-66 | 199 |
| Msa1435520 | AT5G66110.1 | 66.667 | 138 | 44 | 1 | 19 | 156 | 12 | 147 | 1.74e-66 | 199 |
| Msa1435520 | AT5G66110.2 | 65.854 | 123 | 40 | 1 | 34 | 156 | 1 | 121 | 1.43e-58 | 178 |
| Msa1435520 | AT1G71050.1 | 56.329 | 158 | 61 | 4 | 1 | 156 | 1 | 152 | 7.58e-54 | 167 |
| Msa1435520 | AT1G22990.1 | 49.057 | 159 | 71 | 2 | 1 | 156 | 1 | 152 | 1.90e-50 | 159 |
| Msa1435520 | AT1G22990.2 | 46.795 | 156 | 74 | 2 | 1 | 156 | 1 | 147 | 2.06e-47 | 151 |
| Msa1435520 | AT4G39700.1 | 48.734 | 158 | 74 | 4 | 2 | 156 | 5 | 158 | 1.33e-44 | 144 |
| Msa1435520 | AT5G17450.1 | 45.860 | 157 | 76 | 3 | 1 | 156 | 1 | 149 | 1.35e-42 | 139 |
| Msa1435520 | AT4G08570.1 | 44.231 | 156 | 76 | 4 | 2 | 156 | 5 | 150 | 3.91e-40 | 132 |
| Msa1435520 | AT5G17450.2 | 43.396 | 106 | 51 | 3 | 52 | 156 | 8 | 105 | 1.44e-25 | 94.4 |
| Msa1435520 | AT1G06330.1 | 38.000 | 150 | 71 | 6 | 27 | 156 | 3 | 150 | 4.84e-24 | 91.7 |
| Msa1435520 | AT2G18196.1 | 33.824 | 136 | 84 | 4 | 25 | 156 | 45 | 178 | 4.01e-20 | 82.4 |
| Msa1435520 | AT4G10465.1 | 33.566 | 143 | 89 | 3 | 18 | 156 | 43 | 183 | 1.69e-19 | 80.9 |
| Msa1435520 | AT3G56891.1 | 32.544 | 169 | 89 | 6 | 10 | 156 | 1 | 166 | 1.55e-18 | 77.8 |
| Msa1435520 | AT2G18196.2 | 33.071 | 127 | 79 | 4 | 34 | 156 | 1 | 125 | 2.30e-16 | 71.2 |
| Msa1435520 | AT3G56891.2 | 33.103 | 145 | 73 | 5 | 34 | 156 | 1 | 143 | 3.98e-16 | 71.2 |
| Msa1435520 | AT1G29100.2 | 33.974 | 156 | 65 | 4 | 27 | 156 | 4 | 147 | 1.30e-15 | 69.7 |
| Msa1435520 | AT1G29100.1 | 33.333 | 153 | 64 | 4 | 30 | 156 | 1 | 141 | 2.98e-14 | 66.2 |
| Msa1435520 | AT1G56210.1 | 39.744 | 78 | 46 | 1 | 25 | 102 | 39 | 115 | 9.61e-13 | 64.7 |
| Msa1435520 | AT1G66240.1 | 43.939 | 66 | 36 | 1 | 26 | 91 | 33 | 97 | 1.40e-12 | 60.8 |
| Msa1435520 | AT3G56240.3 | 47.761 | 67 | 34 | 1 | 26 | 92 | 3 | 68 | 2.65e-12 | 60.5 |
| Msa1435520 | AT3G56240.1 | 47.761 | 67 | 34 | 1 | 26 | 92 | 3 | 68 | 2.65e-12 | 60.5 |
| Msa1435520 | AT3G02960.1 | 28.571 | 133 | 85 | 2 | 24 | 156 | 124 | 246 | 4.53e-12 | 62.4 |
| Msa1435520 | AT5G27690.1 | 39.130 | 69 | 41 | 1 | 24 | 92 | 28 | 95 | 2.31e-11 | 60.8 |
| Msa1435520 | AT3G06130.2 | 39.706 | 68 | 40 | 1 | 24 | 91 | 8 | 74 | 4.75e-11 | 60.1 |
| Msa1435520 | AT3G48970.1 | 32.639 | 144 | 78 | 4 | 26 | 156 | 3 | 140 | 5.38e-11 | 57.4 |
| Msa1435520 | AT3G48970.2 | 32.639 | 144 | 78 | 4 | 26 | 156 | 1 | 138 | 5.40e-11 | 57.4 |
| Msa1435520 | AT3G48970.3 | 32.639 | 144 | 78 | 4 | 26 | 156 | 1 | 138 | 5.40e-11 | 57.4 |
Find 59 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTAAAGAAAGAGATAATA+TGG | 0.220139 | tig0027707:+15236 | Msa1435520:exon |
| AAATCAAGTATTATGCCTTT+TGG | 0.248220 | tig0027707:+15884 | Msa1435520:three_prime_UTR |
| CAAACACCGCAAACAATTTC+AGG | 0.262177 | tig0027707:+15311 | Msa1435520:CDS |
| TGAAATTGTGAACCAATAAA+AGG | 0.317677 | tig0027707:-15958 | None:intergenic |
| AACACACAAGGTCACTGTTC+AGG | 0.319616 | tig0027707:+15516 | Msa1435520:CDS |
| AATAATTTGCTCTTCTTCTT+CGG | 0.323900 | tig0027707:-16057 | None:intergenic |
| TCGTACGTACCTTGTGCATA+TGG | 0.340646 | tig0027707:-15637 | None:intergenic |
| TACGACAACAATCAGTATTC+TGG | 0.342642 | tig0027707:+15694 | Msa1435520:CDS |
| ATACGCGCCACCACTTTGTT+AGG | 0.355486 | tig0027707:-15550 | None:intergenic |
| TTTACTTACTACTAATTGCT+TGG | 0.381220 | tig0027707:-15220 | None:intergenic |
| TCTTCGGAAAATCAATGATA+AGG | 0.403344 | tig0027707:-16041 | None:intergenic |
| TCGCTCACCGCACTGGTAAG+AGG | 0.420324 | tig0027707:+15572 | Msa1435520:CDS |
| GTAGTTGTTTCTAACATAAC+CGG | 0.435319 | tig0027707:-15674 | None:intergenic |
| CAATTTCATATAATGATTTG+TGG | 0.435765 | tig0027707:+15973 | Msa1435520:three_prime_UTR |
| AAGAGATAATATGGGTGCTC+TGG | 0.436844 | tig0027707:+15245 | Msa1435520:exon |
| GGGTGTGCAACGACGTCGTA+TGG | 0.444075 | tig0027707:-15616 | None:intergenic |
| AATTTCATATAATGATTTGT+GGG | 0.444929 | tig0027707:+15974 | Msa1435520:three_prime_UTR |
| ATTATTATTGTTATTAGTTG+TGG | 0.451022 | tig0027707:+15812 | Msa1435520:three_prime_UTR |
| CATATAGAACAAAATGAAGT+TGG | 0.453237 | tig0027707:-15841 | None:intergenic |
| CTATTACCTGAAATTGTTTG+CGG | 0.461292 | tig0027707:-15317 | None:intergenic |
| GAAATTGTTTGCGGTGTTTG+TGG | 0.465422 | tig0027707:-15308 | None:intergenic |
| CAATGATAAGGCGATTGTAA+TGG | 0.466760 | tig0027707:-16029 | None:intergenic |
| ACGACGTCGTATGGAACATA+TGG | 0.471597 | tig0027707:-15607 | None:intergenic |
| TCAGTATTCTGGATCCCATC+TGG | 0.473879 | tig0027707:+15705 | Msa1435520:CDS |
| TGAACCAAGTTGATATTGAT+AGG | 0.475748 | tig0027707:+15491 | Msa1435520:CDS |
| AAATTGTTTGCGGTGTTTGT+GGG | 0.476948 | tig0027707:-15307 | None:intergenic |
| ACACACAAGGTCACTGTTCA+GGG | 0.478112 | tig0027707:+15517 | Msa1435520:CDS |
| TACGACAAGAAAGCACCTTC+CGG | 0.490150 | tig0027707:+15655 | Msa1435520:CDS |
| ATGATATCACATGACAGAAC+AGG | 0.494670 | tig0027707:-15788 | None:intergenic |
| CTGGTAAGAGGGCTGAGATA+TGG | 0.502117 | tig0027707:+15584 | Msa1435520:CDS |
| AACATAGATAAATTTCCAAA+AGG | 0.506301 | tig0027707:-15899 | None:intergenic |
| CGTACGTACCTTGTGCATAT+GGG | 0.507821 | tig0027707:-15636 | None:intergenic |
| GTGTTTGTGGGAACTTCCAC+CGG | 0.512215 | tig0027707:-15295 | None:intergenic |
| AGTAAAGAAAGAGATAATAT+GGG | 0.512889 | tig0027707:+15237 | Msa1435520:exon |
| TGGAACTAGCACGCGCCAGA+TGG | 0.513296 | tig0027707:-15720 | None:intergenic |
| GCGCGTATCGCTCACCGCAC+TGG | 0.514553 | tig0027707:+15565 | Msa1435520:CDS |
| CGCTCACCGCACTGGTAAGA+GGG | 0.517783 | tig0027707:+15573 | Msa1435520:CDS |
| TCTGAGCTATTTGACTGCTC+CGG | 0.534149 | tig0027707:+15276 | Msa1435520:CDS |
| AAAGTGAGAAGGTCGGTGGA+AGG | 0.544215 | tig0027707:+15457 | Msa1435520:CDS |
| GGTGGAAGTGAAAGTGAAGA+TGG | 0.547212 | tig0027707:+15414 | Msa1435520:CDS |
| GAGCTATTTGACTGCTCCGG+TGG | 0.554467 | tig0027707:+15279 | Msa1435520:CDS |
| GGAACTAGCACGCGCCAGAT+GGG | 0.557432 | tig0027707:-15719 | None:intergenic |
| AGGTCGGTGGAAGGAATGAA+AGG | 0.586836 | tig0027707:+15466 | Msa1435520:CDS |
| GAGAAAAGTGAGAAGGTCGG+TGG | 0.602080 | tig0027707:+15453 | Msa1435520:CDS |
| AGCGGTGGTGTAGCGAACTT+CGG | 0.605621 | tig0027707:-15743 | None:intergenic |
| TCACATGACAGAACAGGCGG+TGG | 0.625825 | tig0027707:-15782 | None:intergenic |
| CGAGAGAAAAGTGAGAAGGT+CGG | 0.626298 | tig0027707:+15450 | Msa1435520:CDS |
| GATGCGAGAGAAAAGTGAGA+AGG | 0.650873 | tig0027707:+15446 | Msa1435520:CDS |
| CACATGACAGAACAGGCGGT+GGG | 0.664346 | tig0027707:-15781 | None:intergenic |
| TTGTTTCTAACATAACCGGA+AGG | 0.675813 | tig0027707:-15670 | None:intergenic |
| TGTTGAACCTAACAAAGTGG+TGG | 0.684270 | tig0027707:+15543 | Msa1435520:CDS |
| CACACAAGGTCACTGTTCAG+GGG | 0.691299 | tig0027707:+15518 | Msa1435520:CDS |
| GGTGGTGTAGCGAACTTCGG+TGG | 0.699721 | tig0027707:-15740 | None:intergenic |
| ATATCACATGACAGAACAGG+CGG | 0.726418 | tig0027707:-15785 | None:intergenic |
| GTTGCACACCCATATGCACA+AGG | 0.727359 | tig0027707:+15628 | Msa1435520:CDS |
| GTATGTTGAACCTAACAAAG+TGG | 0.728726 | tig0027707:+15540 | Msa1435520:CDS |
| TCTCAGCCCTCTTACCAGTG+CGG | 0.734386 | tig0027707:-15579 | None:intergenic |
| TATTGATAGGAAAACACACA+AGG | 0.734878 | tig0027707:+15504 | Msa1435520:CDS |
| AAAGTGAAGATGGACTGCGA+AGG | 0.769260 | tig0027707:+15424 | Msa1435520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAACATATGAATATGAA+TGG | - | tig0027707:15350-15369 | None:intergenic | 15.0% |
| !! | TATATATATATATGTACAGA+CGG | + | tig0027707:15393-15412 | Msa1435520:intron | 15.0% |
| !!! | ATTATTATTGTTATTAGTTG+TGG | + | tig0027707:15812-15831 | Msa1435520:three_prime_UTR | 15.0% |
| !!! | AATTTCATATAATGATTTGT+GGG | + | tig0027707:15974-15993 | Msa1435520:three_prime_UTR | 15.0% |
| !! | TAATAACATATGAATATGAA+TGG | - | tig0027707:15350-15369 | None:intergenic | 15.0% |
| !! | TATATATATATATGTACAGA+CGG | + | tig0027707:15393-15412 | Msa1435520:intron | 15.0% |
| !!! | ATTATTATTGTTATTAGTTG+TGG | + | tig0027707:15812-15831 | Msa1435520:three_prime_UTR | 15.0% |
| !!! | AATTTCATATAATGATTTGT+GGG | + | tig0027707:15974-15993 | Msa1435520:three_prime_UTR | 15.0% |
| !! | AAGTAAAGAAAGAGATAATA+TGG | + | tig0027707:15236-15255 | Msa1435520:exon | 20.0% |
| !! | AGTAAAGAAAGAGATAATAT+GGG | + | tig0027707:15237-15256 | Msa1435520:exon | 20.0% |
| !! | AACATAGATAAATTTCCAAA+AGG | - | tig0027707:15902-15921 | None:intergenic | 20.0% |
| !! | CAATTTCATATAATGATTTG+TGG | + | tig0027707:15973-15992 | Msa1435520:three_prime_UTR | 20.0% |
| !! | AAGTAAAGAAAGAGATAATA+TGG | + | tig0027707:15236-15255 | Msa1435520:exon | 20.0% |
| !! | AGTAAAGAAAGAGATAATAT+GGG | + | tig0027707:15237-15256 | Msa1435520:exon | 20.0% |
| !! | AACATAGATAAATTTCCAAA+AGG | - | tig0027707:15902-15921 | None:intergenic | 20.0% |
| !! | CAATTTCATATAATGATTTG+TGG | + | tig0027707:15973-15992 | Msa1435520:three_prime_UTR | 20.0% |
| ! | TTTACTTACTACTAATTGCT+TGG | - | tig0027707:15223-15242 | None:intergenic | 25.0% |
| ! | ACATATGAATATGAATGGAA+TGG | - | tig0027707:15345-15364 | None:intergenic | 25.0% |
| !! | TTTTCCTATCAATATCAACT+TGG | - | tig0027707:15498-15517 | None:intergenic | 25.0% |
| ! | CATATAGAACAAAATGAAGT+TGG | - | tig0027707:15844-15863 | None:intergenic | 25.0% |
| !! | CAACTTCATTTTGTTCTATA+TGG | + | tig0027707:15842-15861 | Msa1435520:three_prime_UTR | 25.0% |
| !! | AAATCAAGTATTATGCCTTT+TGG | + | tig0027707:15884-15903 | Msa1435520:three_prime_UTR | 25.0% |
| ! | TGAAATTGTGAACCAATAAA+AGG | - | tig0027707:15961-15980 | None:intergenic | 25.0% |
| !!! | AATAATTTGCTCTTCTTCTT+CGG | - | tig0027707:16060-16079 | None:intergenic | 25.0% |
| ! | TTTACTTACTACTAATTGCT+TGG | - | tig0027707:15223-15242 | None:intergenic | 25.0% |
| ! | ACATATGAATATGAATGGAA+TGG | - | tig0027707:15345-15364 | None:intergenic | 25.0% |
| !! | TTTTCCTATCAATATCAACT+TGG | - | tig0027707:15498-15517 | None:intergenic | 25.0% |
| ! | CATATAGAACAAAATGAAGT+TGG | - | tig0027707:15844-15863 | None:intergenic | 25.0% |
| !! | CAACTTCATTTTGTTCTATA+TGG | + | tig0027707:15842-15861 | Msa1435520:three_prime_UTR | 25.0% |
| !! | AAATCAAGTATTATGCCTTT+TGG | + | tig0027707:15884-15903 | Msa1435520:three_prime_UTR | 25.0% |
| ! | TGAAATTGTGAACCAATAAA+AGG | - | tig0027707:15961-15980 | None:intergenic | 25.0% |
| !!! | AATAATTTGCTCTTCTTCTT+CGG | - | tig0027707:16060-16079 | None:intergenic | 25.0% |
| CTATTACCTGAAATTGTTTG+CGG | - | tig0027707:15320-15339 | None:intergenic | 30.0% | |
| ATATATATATGTACAGACGG+TGG | + | tig0027707:15396-15415 | Msa1435520:intron | 30.0% | |
| !! | TGAACCAAGTTGATATTGAT+AGG | + | tig0027707:15491-15510 | Msa1435520:CDS | 30.0% |
| TATTGATAGGAAAACACACA+AGG | + | tig0027707:15504-15523 | Msa1435520:CDS | 30.0% | |
| !! | GTAGTTGTTTCTAACATAAC+CGG | - | tig0027707:15677-15696 | None:intergenic | 30.0% |
| ! | CATTTTGTTCTATATGGAGA+TGG | + | tig0027707:15848-15867 | Msa1435520:three_prime_UTR | 30.0% |
| ! | AGTAGGTTACTACCTTTTAT+TGG | + | tig0027707:15946-15965 | Msa1435520:three_prime_UTR | 30.0% |
| TCTTCGGAAAATCAATGATA+AGG | - | tig0027707:16044-16063 | None:intergenic | 30.0% | |
| CTATTACCTGAAATTGTTTG+CGG | - | tig0027707:15320-15339 | None:intergenic | 30.0% | |
| ATATATATATGTACAGACGG+TGG | + | tig0027707:15396-15415 | Msa1435520:intron | 30.0% | |
| !! | TGAACCAAGTTGATATTGAT+AGG | + | tig0027707:15491-15510 | Msa1435520:CDS | 30.0% |
| TATTGATAGGAAAACACACA+AGG | + | tig0027707:15504-15523 | Msa1435520:CDS | 30.0% | |
| !! | GTAGTTGTTTCTAACATAAC+CGG | - | tig0027707:15677-15696 | None:intergenic | 30.0% |
| ! | CATTTTGTTCTATATGGAGA+TGG | + | tig0027707:15848-15867 | Msa1435520:three_prime_UTR | 30.0% |
| ! | AGTAGGTTACTACCTTTTAT+TGG | + | tig0027707:15946-15965 | Msa1435520:three_prime_UTR | 30.0% |
| TCTTCGGAAAATCAATGATA+AGG | - | tig0027707:16044-16063 | None:intergenic | 30.0% | |
| AAATTGTTTGCGGTGTTTGT+GGG | - | tig0027707:15310-15329 | None:intergenic | 35.0% | |
| GTATGTTGAACCTAACAAAG+TGG | + | tig0027707:15540-15559 | Msa1435520:CDS | 35.0% | |
| !! | TTGTTTCTAACATAACCGGA+AGG | - | tig0027707:15673-15692 | None:intergenic | 35.0% |
| TACGACAACAATCAGTATTC+TGG | + | tig0027707:15694-15713 | Msa1435520:CDS | 35.0% | |
| ATGATATCACATGACAGAAC+AGG | - | tig0027707:15791-15810 | None:intergenic | 35.0% | |
| TTCGTAGTAGTAGTAGTAGT+AGG | + | tig0027707:15929-15948 | Msa1435520:three_prime_UTR | 35.0% | |
| CAATGATAAGGCGATTGTAA+TGG | - | tig0027707:16032-16051 | None:intergenic | 35.0% | |
| AAATTGTTTGCGGTGTTTGT+GGG | - | tig0027707:15310-15329 | None:intergenic | 35.0% | |
| GTATGTTGAACCTAACAAAG+TGG | + | tig0027707:15540-15559 | Msa1435520:CDS | 35.0% | |
| !! | TTGTTTCTAACATAACCGGA+AGG | - | tig0027707:15673-15692 | None:intergenic | 35.0% |
| TACGACAACAATCAGTATTC+TGG | + | tig0027707:15694-15713 | Msa1435520:CDS | 35.0% | |
| ATGATATCACATGACAGAAC+AGG | - | tig0027707:15791-15810 | None:intergenic | 35.0% | |
| TTCGTAGTAGTAGTAGTAGT+AGG | + | tig0027707:15929-15948 | Msa1435520:three_prime_UTR | 35.0% | |
| CAATGATAAGGCGATTGTAA+TGG | - | tig0027707:16032-16051 | None:intergenic | 35.0% | |
| AAGAGATAATATGGGTGCTC+TGG | + | tig0027707:15245-15264 | Msa1435520:exon | 40.0% | |
| GAAATTGTTTGCGGTGTTTG+TGG | - | tig0027707:15311-15330 | None:intergenic | 40.0% | |
| CAAACACCGCAAACAATTTC+AGG | + | tig0027707:15311-15330 | Msa1435520:CDS | 40.0% | |
| TGTTGAACCTAACAAAGTGG+TGG | + | tig0027707:15543-15562 | Msa1435520:CDS | 40.0% | |
| ATATCACATGACAGAACAGG+CGG | - | tig0027707:15788-15807 | None:intergenic | 40.0% | |
| AAGAGATAATATGGGTGCTC+TGG | + | tig0027707:15245-15264 | Msa1435520:exon | 40.0% | |
| GAAATTGTTTGCGGTGTTTG+TGG | - | tig0027707:15311-15330 | None:intergenic | 40.0% | |
| CAAACACCGCAAACAATTTC+AGG | + | tig0027707:15311-15330 | Msa1435520:CDS | 40.0% | |
| TGTTGAACCTAACAAAGTGG+TGG | + | tig0027707:15543-15562 | Msa1435520:CDS | 40.0% | |
| ATATCACATGACAGAACAGG+CGG | - | tig0027707:15788-15807 | None:intergenic | 40.0% | |
| TCTGAGCTATTTGACTGCTC+CGG | + | tig0027707:15276-15295 | Msa1435520:CDS | 45.0% | |
| GGTGGAAGTGAAAGTGAAGA+TGG | + | tig0027707:15414-15433 | Msa1435520:CDS | 45.0% | |
| !! | AAAGTGAAGATGGACTGCGA+AGG | + | tig0027707:15424-15443 | Msa1435520:CDS | 45.0% |
| GATGCGAGAGAAAAGTGAGA+AGG | + | tig0027707:15446-15465 | Msa1435520:CDS | 45.0% | |
| CGAGAGAAAAGTGAGAAGGT+CGG | + | tig0027707:15450-15469 | Msa1435520:CDS | 45.0% | |
| AACACACAAGGTCACTGTTC+AGG | + | tig0027707:15516-15535 | Msa1435520:CDS | 45.0% | |
| ACACACAAGGTCACTGTTCA+GGG | + | tig0027707:15517-15536 | Msa1435520:CDS | 45.0% | |
| ACGACGTCGTATGGAACATA+TGG | - | tig0027707:15610-15629 | None:intergenic | 45.0% | |
| CGTACGTACCTTGTGCATAT+GGG | - | tig0027707:15639-15658 | None:intergenic | 45.0% | |
| TCGTACGTACCTTGTGCATA+TGG | - | tig0027707:15640-15659 | None:intergenic | 45.0% | |
| !! | TACGACAAGAAAGCACCTTC+CGG | + | tig0027707:15655-15674 | Msa1435520:CDS | 45.0% |
| TCAGTATTCTGGATCCCATC+TGG | + | tig0027707:15705-15724 | Msa1435520:CDS | 45.0% | |
| TCTGAGCTATTTGACTGCTC+CGG | + | tig0027707:15276-15295 | Msa1435520:CDS | 45.0% | |
| GGTGGAAGTGAAAGTGAAGA+TGG | + | tig0027707:15414-15433 | Msa1435520:CDS | 45.0% | |
| !! | AAAGTGAAGATGGACTGCGA+AGG | + | tig0027707:15424-15443 | Msa1435520:CDS | 45.0% |
| GATGCGAGAGAAAAGTGAGA+AGG | + | tig0027707:15446-15465 | Msa1435520:CDS | 45.0% | |
| CGAGAGAAAAGTGAGAAGGT+CGG | + | tig0027707:15450-15469 | Msa1435520:CDS | 45.0% | |
| AACACACAAGGTCACTGTTC+AGG | + | tig0027707:15516-15535 | Msa1435520:CDS | 45.0% | |
| ACACACAAGGTCACTGTTCA+GGG | + | tig0027707:15517-15536 | Msa1435520:CDS | 45.0% | |
| ACGACGTCGTATGGAACATA+TGG | - | tig0027707:15610-15629 | None:intergenic | 45.0% | |
| CGTACGTACCTTGTGCATAT+GGG | - | tig0027707:15639-15658 | None:intergenic | 45.0% | |
| TCGTACGTACCTTGTGCATA+TGG | - | tig0027707:15640-15659 | None:intergenic | 45.0% | |
| !! | TACGACAAGAAAGCACCTTC+CGG | + | tig0027707:15655-15674 | Msa1435520:CDS | 45.0% |
| TCAGTATTCTGGATCCCATC+TGG | + | tig0027707:15705-15724 | Msa1435520:CDS | 45.0% | |
| GTGTTTGTGGGAACTTCCAC+CGG | - | tig0027707:15298-15317 | None:intergenic | 50.0% | |
| GAGAAAAGTGAGAAGGTCGG+TGG | + | tig0027707:15453-15472 | Msa1435520:CDS | 50.0% | |
| AAAGTGAGAAGGTCGGTGGA+AGG | + | tig0027707:15457-15476 | Msa1435520:CDS | 50.0% | |
| AGGTCGGTGGAAGGAATGAA+AGG | + | tig0027707:15466-15485 | Msa1435520:CDS | 50.0% | |
| CACACAAGGTCACTGTTCAG+GGG | + | tig0027707:15518-15537 | Msa1435520:CDS | 50.0% | |
| ATACGCGCCACCACTTTGTT+AGG | - | tig0027707:15553-15572 | None:intergenic | 50.0% | |
| CTGGTAAGAGGGCTGAGATA+TGG | + | tig0027707:15584-15603 | Msa1435520:CDS | 50.0% | |
| GTTGCACACCCATATGCACA+AGG | + | tig0027707:15628-15647 | Msa1435520:CDS | 50.0% | |
| ! | ATTTTCGTCGCTGAAAGCGG+TGG | - | tig0027707:15761-15780 | None:intergenic | 50.0% |
| ! | GGGATTTTCGTCGCTGAAAG+CGG | - | tig0027707:15764-15783 | None:intergenic | 50.0% |
| GTGTTTGTGGGAACTTCCAC+CGG | - | tig0027707:15298-15317 | None:intergenic | 50.0% | |
| GAGAAAAGTGAGAAGGTCGG+TGG | + | tig0027707:15453-15472 | Msa1435520:CDS | 50.0% | |
| AAAGTGAGAAGGTCGGTGGA+AGG | + | tig0027707:15457-15476 | Msa1435520:CDS | 50.0% | |
| AGGTCGGTGGAAGGAATGAA+AGG | + | tig0027707:15466-15485 | Msa1435520:CDS | 50.0% | |
| CACACAAGGTCACTGTTCAG+GGG | + | tig0027707:15518-15537 | Msa1435520:CDS | 50.0% | |
| ATACGCGCCACCACTTTGTT+AGG | - | tig0027707:15553-15572 | None:intergenic | 50.0% | |
| CTGGTAAGAGGGCTGAGATA+TGG | + | tig0027707:15584-15603 | Msa1435520:CDS | 50.0% | |
| GTTGCACACCCATATGCACA+AGG | + | tig0027707:15628-15647 | Msa1435520:CDS | 50.0% | |
| ! | ATTTTCGTCGCTGAAAGCGG+TGG | - | tig0027707:15761-15780 | None:intergenic | 50.0% |
| ! | GGGATTTTCGTCGCTGAAAG+CGG | - | tig0027707:15764-15783 | None:intergenic | 50.0% |
| GAGCTATTTGACTGCTCCGG+TGG | + | tig0027707:15279-15298 | Msa1435520:CDS | 55.0% | |
| TCTCAGCCCTCTTACCAGTG+CGG | - | tig0027707:15582-15601 | None:intergenic | 55.0% | |
| AGCGGTGGTGTAGCGAACTT+CGG | - | tig0027707:15746-15765 | None:intergenic | 55.0% | |
| CACATGACAGAACAGGCGGT+GGG | - | tig0027707:15784-15803 | None:intergenic | 55.0% | |
| TCACATGACAGAACAGGCGG+TGG | - | tig0027707:15785-15804 | None:intergenic | 55.0% | |
| GAGCTATTTGACTGCTCCGG+TGG | + | tig0027707:15279-15298 | Msa1435520:CDS | 55.0% | |
| TCTCAGCCCTCTTACCAGTG+CGG | - | tig0027707:15582-15601 | None:intergenic | 55.0% | |
| AGCGGTGGTGTAGCGAACTT+CGG | - | tig0027707:15746-15765 | None:intergenic | 55.0% | |
| CACATGACAGAACAGGCGGT+GGG | - | tig0027707:15784-15803 | None:intergenic | 55.0% | |
| TCACATGACAGAACAGGCGG+TGG | - | tig0027707:15785-15804 | None:intergenic | 55.0% | |
| ! | TCGCTCACCGCACTGGTAAG+AGG | + | tig0027707:15572-15591 | Msa1435520:CDS | 60.0% |
| ! | CGCTCACCGCACTGGTAAGA+GGG | + | tig0027707:15573-15592 | Msa1435520:CDS | 60.0% |
| GGGTGTGCAACGACGTCGTA+TGG | - | tig0027707:15619-15638 | None:intergenic | 60.0% | |
| GGAACTAGCACGCGCCAGAT+GGG | - | tig0027707:15722-15741 | None:intergenic | 60.0% | |
| TGGAACTAGCACGCGCCAGA+TGG | - | tig0027707:15723-15742 | None:intergenic | 60.0% | |
| GGTGGTGTAGCGAACTTCGG+TGG | - | tig0027707:15743-15762 | None:intergenic | 60.0% | |
| ! | TCGCTCACCGCACTGGTAAG+AGG | + | tig0027707:15572-15591 | Msa1435520:CDS | 60.0% |
| ! | CGCTCACCGCACTGGTAAGA+GGG | + | tig0027707:15573-15592 | Msa1435520:CDS | 60.0% |
| GGGTGTGCAACGACGTCGTA+TGG | - | tig0027707:15619-15638 | None:intergenic | 60.0% | |
| GGAACTAGCACGCGCCAGAT+GGG | - | tig0027707:15722-15741 | None:intergenic | 60.0% | |
| TGGAACTAGCACGCGCCAGA+TGG | - | tig0027707:15723-15742 | None:intergenic | 60.0% | |
| GGTGGTGTAGCGAACTTCGG+TGG | - | tig0027707:15743-15762 | None:intergenic | 60.0% | |
| GCGCGTATCGCTCACCGCAC+TGG | + | tig0027707:15565-15584 | Msa1435520:CDS | 70.0% | |
| GCGCGTATCGCTCACCGCAC+TGG | + | tig0027707:15565-15584 | Msa1435520:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027707 | gene | 15171 | 16087 | 15171 | ID=Msa1435520;Name=Msa1435520 |
| tig0027707 | mRNA | 15171 | 16087 | 15171 | ID=Msa1435520-mRNA-1;Parent=Msa1435520;Name=Msa1435520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=84|1|1|1|1|1|2|283|156 |
| tig0027707 | exon | 15171 | 15332 | 15171 | ID=Msa1435520-mRNA-1:exon:9742;Parent=Msa1435520-mRNA-1 |
| tig0027707 | exon | 15412 | 16087 | 15412 | ID=Msa1435520-mRNA-1:exon:9743;Parent=Msa1435520-mRNA-1 |
| tig0027707 | five_prime_UTR | 15171 | 15254 | 15171 | ID=Msa1435520-mRNA-1:five_prime_utr;Parent=Msa1435520-mRNA-1 |
| tig0027707 | CDS | 15255 | 15332 | 15255 | ID=Msa1435520-mRNA-1:cds;Parent=Msa1435520-mRNA-1 |
| tig0027707 | CDS | 15412 | 15804 | 15412 | ID=Msa1435520-mRNA-1:cds;Parent=Msa1435520-mRNA-1 |
| tig0027707 | three_prime_UTR | 15805 | 16087 | 15805 | ID=Msa1435520-mRNA-1:three_prime_utr;Parent=Msa1435520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
