Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424620 | sp|Q9SZN7|HIP26_ARATH | 76.282 | 156 | 34 | 1 | 1 | 156 | 1 | 153 | 1.09e-83 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424620 | G7J8I5 | 98.718 | 156 | 2 | 0 | 1 | 156 | 1 | 156 | 1.29e-112 | 325 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0118540 | Msa1424620 | 0.801714 | 7.905351e-49 | -8.615850e-47 |
| Msa1358670 | Msa1424620 | 0.807780 | 4.276240e-50 | -8.615850e-47 |
| Msa1364940 | Msa1424620 | 0.995486 | 9.446335e-217 | -8.615850e-47 |
| Msa1367490 | Msa1424620 | 0.997660 | 1.161806e-246 | -8.615850e-47 |
| Msa1417570 | Msa1424620 | 0.970332 | 1.861319e-131 | -8.615850e-47 |
| Msa1422810 | Msa1424620 | 0.828407 | 9.148693e-55 | -8.615850e-47 |
| Msa1424620 | Msa1435520 | 0.948238 | 1.403134e-106 | -8.615850e-47 |
| Msa1424620 | Msa1454950 | 0.838080 | 3.556374e-57 | -8.615850e-47 |
| Msa0609000 | Msa1424620 | 0.802171 | 6.367733e-49 | -8.615850e-47 |
| Msa0618930 | Msa1424620 | 0.801456 | 8.926505e-49 | -8.615850e-47 |
| Msa0643320 | Msa1424620 | 0.840922 | 6.494593e-58 | -8.615850e-47 |
| Msa0661710 | Msa1424620 | 0.810012 | 1.424023e-50 | -8.615850e-47 |
| Msa0683140 | Msa1424620 | 0.852414 | 4.688600e-61 | -8.615850e-47 |
| Msa0683600 | Msa1424620 | 0.849670 | 2.785990e-60 | -8.615850e-47 |
| Msa0719420 | Msa1424620 | 0.810915 | 9.091442e-51 | -8.615850e-47 |
| Msa0784860 | Msa1424620 | 0.800725 | 1.259490e-48 | -8.615850e-47 |
| Msa0789680 | Msa1424620 | 0.811845 | 5.708918e-51 | -8.615850e-47 |
| Msa0802410 | Msa1424620 | 0.800649 | 1.305244e-48 | -8.615850e-47 |
| Msa0186310 | Msa1424620 | 0.830307 | 3.161303e-55 | -8.615850e-47 |
| Msa0189300 | Msa1424620 | 0.810805 | 9.600561e-51 | -8.615850e-47 |
| Msa0231660 | Msa1424620 | 0.823381 | 1.428170e-53 | -8.615850e-47 |
| Msa0386040 | Msa1424620 | 0.842944 | 1.896978e-58 | -8.615850e-47 |
| Msa0387910 | Msa1424620 | 0.825189 | 5.369508e-54 | -8.615850e-47 |
| Msa0421260 | Msa1424620 | 0.807559 | 4.765011e-50 | -8.615850e-47 |
| Msa0436920 | Msa1424620 | -0.817728 | 2.837348e-52 | -8.615850e-47 |
| Msa0467220 | Msa1424620 | 0.830075 | 3.601171e-55 | -8.615850e-47 |
| Msa1088290 | Msa1424620 | 0.830568 | 2.729692e-55 | -8.615850e-47 |
| Msa0251230 | Msa1424620 | 0.809848 | 1.545078e-50 | -8.615850e-47 |
| Msa0271360 | Msa1424620 | 0.814220 | 1.721313e-51 | -8.615850e-47 |
| Msa0335820 | Msa1424620 | -0.806079 | 9.790998e-50 | -8.615850e-47 |
| Msa1133230 | Msa1424620 | 0.822253 | 2.615285e-53 | -8.615850e-47 |
| Msa1133250 | Msa1424620 | 0.823875 | 1.094387e-53 | -8.615850e-47 |
| Msa0524290 | Msa1424620 | 0.992185 | 8.520039e-192 | -8.615850e-47 |
| Msa0524400 | Msa1424620 | 0.991553 | 2.909552e-188 | -8.615850e-47 |
| Msa0545080 | Msa1424620 | 0.808316 | 3.288825e-50 | -8.615850e-47 |
| Msa0602370 | Msa1424620 | 0.844432 | 7.588699e-59 | -8.615850e-47 |
| Msa0951400 | Msa1424620 | 0.814419 | 1.555581e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424620 | MtrunA17_Chr3g0145621 | 98.718 | 156 | 2 | 0 | 1 | 156 | 1 | 156 | 2.48e-116 | 325 |
| Msa1424620 | MtrunA17_Chr4g0036931 | 79.245 | 159 | 27 | 3 | 1 | 156 | 1 | 156 | 1.70e-88 | 254 |
| Msa1424620 | MtrunA17_Chr5g0405811 | 61.491 | 161 | 53 | 3 | 1 | 156 | 1 | 157 | 7.73e-66 | 197 |
| Msa1424620 | MtrunA17_Chr1g0160201 | 53.205 | 156 | 64 | 3 | 1 | 156 | 1 | 147 | 1.24e-53 | 166 |
| Msa1424620 | MtrunA17_Chr8g0382721 | 51.613 | 155 | 69 | 3 | 2 | 156 | 5 | 153 | 4.19e-49 | 155 |
| Msa1424620 | MtrunA17_Chr3g0124411 | 51.923 | 156 | 66 | 4 | 2 | 156 | 5 | 152 | 4.89e-49 | 155 |
| Msa1424620 | MtrunA17_Chr5g0407821 | 47.436 | 156 | 71 | 3 | 1 | 156 | 1 | 145 | 1.22e-45 | 146 |
| Msa1424620 | MtrunA17_Chr6g0448861 | 45.062 | 162 | 76 | 3 | 1 | 156 | 1 | 155 | 5.20e-45 | 145 |
| Msa1424620 | MtrunA17_Chr7g0251491 | 48.077 | 156 | 71 | 3 | 1 | 156 | 25 | 170 | 6.43e-45 | 145 |
| Msa1424620 | MtrunA17_Chr3g0115421 | 47.742 | 155 | 71 | 3 | 2 | 156 | 5 | 149 | 2.20e-42 | 138 |
| Msa1424620 | MtrunA17_Chr5g0422891 | 37.821 | 156 | 88 | 3 | 1 | 156 | 1 | 147 | 9.31e-35 | 118 |
| Msa1424620 | MtrunA17_Chr2g0325601 | 36.429 | 140 | 77 | 3 | 28 | 156 | 4 | 142 | 3.24e-22 | 86.3 |
| Msa1424620 | MtrunA17_Chr1g0189221 | 42.157 | 102 | 54 | 2 | 25 | 122 | 52 | 152 | 1.45e-20 | 83.2 |
| Msa1424620 | MtrunA17_Chr6g0471231 | 36.364 | 143 | 70 | 6 | 28 | 156 | 5 | 140 | 3.83e-18 | 75.9 |
| Msa1424620 | MtrunA17_Chr7g0218981 | 48.485 | 66 | 33 | 1 | 26 | 91 | 4 | 68 | 2.98e-14 | 65.5 |
| Msa1424620 | MtrunA17_Chr3g0094841 | 34.586 | 133 | 74 | 3 | 26 | 156 | 116 | 237 | 3.22e-14 | 67.4 |
| Msa1424620 | MtrunA17_Chr1g0192131 | 36.765 | 68 | 43 | 0 | 25 | 92 | 14 | 81 | 1.95e-12 | 63.5 |
| Msa1424620 | MtrunA17_Chr1g0198341 | 45.455 | 66 | 35 | 1 | 26 | 91 | 4 | 68 | 3.47e-12 | 58.9 |
| Msa1424620 | MtrunA17_Chr7g0269081 | 36.765 | 68 | 42 | 1 | 24 | 91 | 20 | 86 | 5.05e-12 | 62.4 |
| Msa1424620 | MtrunA17_Chr7g0272571 | 42.857 | 63 | 35 | 1 | 30 | 92 | 37 | 98 | 7.76e-12 | 62.0 |
| Msa1424620 | MtrunA17_Chr6g0460361 | 37.273 | 110 | 61 | 6 | 52 | 156 | 4 | 110 | 1.39e-11 | 58.2 |
| Msa1424620 | MtrunA17_Chr3g0080011 | 55.769 | 52 | 21 | 2 | 1 | 52 | 25 | 74 | 2.51e-11 | 57.0 |
| Msa1424620 | MtrunA17_Chr1g0208301 | 39.706 | 68 | 40 | 1 | 24 | 91 | 11 | 77 | 2.83e-11 | 60.5 |
| Msa1424620 | MtrunA17_Chr3g0111541 | 41.538 | 65 | 37 | 1 | 26 | 90 | 12 | 75 | 3.76e-11 | 58.9 |
| Msa1424620 | MtrunA17_Chr7g0263491 | 46.269 | 67 | 34 | 1 | 26 | 92 | 209 | 273 | 6.49e-11 | 58.9 |
| Msa1424620 | MtrunA17_Chr8g0386231 | 44.776 | 67 | 36 | 1 | 30 | 95 | 55 | 121 | 9.34e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1424620 | AT4G38580.1 | 76.282 | 156 | 34 | 1 | 1 | 156 | 1 | 153 | 1.11e-84 | 245 |
| Msa1424620 | AT4G38580.2 | 76.282 | 156 | 34 | 1 | 1 | 156 | 1 | 153 | 1.11e-84 | 245 |
| Msa1424620 | AT4G35060.1 | 70.701 | 157 | 41 | 3 | 1 | 156 | 1 | 153 | 1.89e-76 | 224 |
| Msa1424620 | AT5G66110.3 | 66.667 | 138 | 44 | 1 | 19 | 156 | 12 | 147 | 2.19e-66 | 199 |
| Msa1424620 | AT5G66110.1 | 66.667 | 138 | 44 | 1 | 19 | 156 | 12 | 147 | 2.19e-66 | 199 |
| Msa1424620 | AT5G66110.2 | 65.854 | 123 | 40 | 1 | 34 | 156 | 1 | 121 | 1.48e-58 | 178 |
| Msa1424620 | AT1G71050.1 | 56.329 | 158 | 61 | 4 | 1 | 156 | 1 | 152 | 9.65e-54 | 167 |
| Msa1424620 | AT1G22990.1 | 49.057 | 159 | 71 | 2 | 1 | 156 | 1 | 152 | 2.00e-50 | 159 |
| Msa1424620 | AT1G22990.2 | 46.795 | 156 | 74 | 2 | 1 | 156 | 1 | 147 | 2.35e-47 | 150 |
| Msa1424620 | AT4G39700.1 | 48.734 | 158 | 74 | 4 | 2 | 156 | 5 | 158 | 1.24e-44 | 144 |
| Msa1424620 | AT5G17450.1 | 45.860 | 157 | 76 | 3 | 1 | 156 | 1 | 149 | 1.48e-42 | 139 |
| Msa1424620 | AT4G08570.1 | 44.231 | 156 | 76 | 4 | 2 | 156 | 5 | 150 | 3.29e-40 | 132 |
| Msa1424620 | AT5G17450.2 | 43.396 | 106 | 51 | 3 | 52 | 156 | 8 | 105 | 1.51e-25 | 94.4 |
| Msa1424620 | AT1G06330.1 | 38.000 | 150 | 71 | 6 | 27 | 156 | 3 | 150 | 4.89e-24 | 91.7 |
| Msa1424620 | AT2G18196.1 | 33.824 | 136 | 84 | 4 | 25 | 156 | 45 | 178 | 4.05e-20 | 82.4 |
| Msa1424620 | AT4G10465.1 | 33.566 | 143 | 89 | 3 | 18 | 156 | 43 | 183 | 1.81e-19 | 80.9 |
| Msa1424620 | AT3G56891.1 | 32.544 | 169 | 89 | 6 | 10 | 156 | 1 | 166 | 1.57e-18 | 77.8 |
| Msa1424620 | AT2G18196.2 | 33.071 | 127 | 79 | 4 | 34 | 156 | 1 | 125 | 2.37e-16 | 71.2 |
| Msa1424620 | AT3G56891.2 | 33.103 | 145 | 73 | 5 | 34 | 156 | 1 | 143 | 3.70e-16 | 71.2 |
| Msa1424620 | AT1G29100.2 | 33.974 | 156 | 65 | 4 | 27 | 156 | 4 | 147 | 1.26e-15 | 69.7 |
| Msa1424620 | AT1G29100.1 | 33.333 | 153 | 64 | 4 | 30 | 156 | 1 | 141 | 3.31e-14 | 65.9 |
| Msa1424620 | AT1G56210.1 | 39.744 | 78 | 46 | 1 | 25 | 102 | 39 | 115 | 9.07e-13 | 65.1 |
| Msa1424620 | AT1G66240.1 | 43.939 | 66 | 36 | 1 | 26 | 91 | 33 | 97 | 1.20e-12 | 60.8 |
| Msa1424620 | AT3G56240.3 | 47.761 | 67 | 34 | 1 | 26 | 92 | 3 | 68 | 2.19e-12 | 60.8 |
| Msa1424620 | AT3G56240.1 | 47.761 | 67 | 34 | 1 | 26 | 92 | 3 | 68 | 2.19e-12 | 60.8 |
| Msa1424620 | AT3G02960.1 | 28.571 | 133 | 85 | 2 | 24 | 156 | 124 | 246 | 4.53e-12 | 62.4 |
| Msa1424620 | AT5G27690.1 | 39.130 | 69 | 41 | 1 | 24 | 92 | 28 | 95 | 1.74e-11 | 61.2 |
| Msa1424620 | AT3G06130.2 | 39.706 | 68 | 40 | 1 | 24 | 91 | 8 | 74 | 4.40e-11 | 60.1 |
Find 61 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTAAAGAAAGAGATAATA+TGG | 0.220139 | tig0025770:+68577 | Msa1424620:exon |
| AAATCAAGTATTATGCCTTT+TGG | 0.248220 | tig0025770:+69268 | Msa1424620:three_prime_UTR |
| CAAACACCGCAAACAATTTC+AGG | 0.262177 | tig0025770:+68652 | Msa1424620:CDS |
| TGAAATTGTGAACCAATAAA+AGG | 0.317677 | tig0025770:-69342 | None:intergenic |
| AGCACACAAGGTCACTGTTC+AGG | 0.319616 | tig0025770:+68900 | Msa1424620:CDS |
| AATAATTTGCTCTTCTTCTT+CGG | 0.323900 | tig0025770:-69441 | None:intergenic |
| TCGTACGTACCTTGTGCATA+TGG | 0.340646 | tig0025770:-69021 | None:intergenic |
| TACGACAACAATCAGTATTC+TGG | 0.342642 | tig0025770:+69078 | Msa1424620:CDS |
| ATACGCGCCACCACTTTGTT+AGG | 0.355486 | tig0025770:-68934 | None:intergenic |
| TTTACTTACTACTAATTGCT+TGG | 0.381220 | tig0025770:-68561 | None:intergenic |
| TCTTCGGAAAATCAATGATA+AGG | 0.403344 | tig0025770:-69425 | None:intergenic |
| TCGCTCACCGCACTGGTAAG+AGG | 0.420324 | tig0025770:+68956 | Msa1424620:CDS |
| CTTTCCTATCAATATCAACT+TGG | 0.425944 | tig0025770:-68879 | None:intergenic |
| GTAGTTGTTTCTAACATAAC+CGG | 0.435319 | tig0025770:-69058 | None:intergenic |
| CAATTTCATATAATGATTTG+TGG | 0.435765 | tig0025770:+69357 | Msa1424620:three_prime_UTR |
| AAGAGATAATATGGGTGCTC+TGG | 0.436844 | tig0025770:+68586 | Msa1424620:exon |
| GGGTGTGCAACGACGTCGTA+TGG | 0.444075 | tig0025770:-69000 | None:intergenic |
| AATTTCATATAATGATTTGT+GGG | 0.444929 | tig0025770:+69358 | Msa1424620:three_prime_UTR |
| ATTATTATTGTTATTAGTTG+TGG | 0.451022 | tig0025770:+69196 | Msa1424620:three_prime_UTR |
| TGATTCGTAGTAGTAGTAGT+AGG | 0.452275 | tig0025770:+69310 | Msa1424620:three_prime_UTR |
| CATATAGAACAAAATGAAGT+TGG | 0.453237 | tig0025770:-69225 | None:intergenic |
| CTATTACCTGAAATTGTTTG+CGG | 0.461292 | tig0025770:-68658 | None:intergenic |
| GAAATTGTTTGCGGTGTTTG+TGG | 0.465422 | tig0025770:-68649 | None:intergenic |
| CAATGATAAGGCGATTGTAA+TGG | 0.466760 | tig0025770:-69413 | None:intergenic |
| ACGACGTCGTATGGAACATA+TGG | 0.471597 | tig0025770:-68991 | None:intergenic |
| TCAGTATTCTGGATCCCATC+TGG | 0.473879 | tig0025770:+69089 | Msa1424620:CDS |
| TGAACCAAGTTGATATTGAT+AGG | 0.475748 | tig0025770:+68875 | Msa1424620:CDS |
| AAATTGTTTGCGGTGTTTGT+GGG | 0.476948 | tig0025770:-68648 | None:intergenic |
| GCACACAAGGTCACTGTTCA+GGG | 0.478112 | tig0025770:+68901 | Msa1424620:CDS |
| TACGACAAGAAAGCACCTTC+CGG | 0.490150 | tig0025770:+69039 | Msa1424620:CDS |
| ATGATATCACATGACAGAAC+AGG | 0.494670 | tig0025770:-69172 | None:intergenic |
| CTGGTAAGAGGGCTGAGATA+TGG | 0.502117 | tig0025770:+68968 | Msa1424620:CDS |
| AACATAGATAAATTTCCAAA+AGG | 0.506301 | tig0025770:-69283 | None:intergenic |
| CGTACGTACCTTGTGCATAT+GGG | 0.507821 | tig0025770:-69020 | None:intergenic |
| GTGTTTGTGGGAACTTCCAC+CGG | 0.512215 | tig0025770:-68636 | None:intergenic |
| AGTAAAGAAAGAGATAATAT+GGG | 0.512889 | tig0025770:+68578 | Msa1424620:exon |
| TGGAACTAGCACGCGCCAGA+TGG | 0.513296 | tig0025770:-69104 | None:intergenic |
| GCGCGTATCGCTCACCGCAC+TGG | 0.514553 | tig0025770:+68949 | Msa1424620:CDS |
| CGCTCACCGCACTGGTAAGA+GGG | 0.517783 | tig0025770:+68957 | Msa1424620:CDS |
| TCTGAGCTATTTGACTGCTC+CGG | 0.534149 | tig0025770:+68617 | Msa1424620:CDS |
| AAAGTGAGAAGGTCGGTGGA+AGG | 0.544215 | tig0025770:+68841 | Msa1424620:CDS |
| GGTGGAAGTGAAAGTGAAGA+TGG | 0.547212 | tig0025770:+68798 | Msa1424620:CDS |
| GAGCTATTTGACTGCTCCGG+TGG | 0.554467 | tig0025770:+68620 | Msa1424620:CDS |
| GGAACTAGCACGCGCCAGAT+GGG | 0.557432 | tig0025770:-69103 | None:intergenic |
| AGGTCGGTGGAAGGAATGAA+AGG | 0.586836 | tig0025770:+68850 | Msa1424620:CDS |
| GAGAAAAGTGAGAAGGTCGG+TGG | 0.602080 | tig0025770:+68837 | Msa1424620:CDS |
| AGCGGTGGTGTAGCGAACTT+CGG | 0.605621 | tig0025770:-69127 | None:intergenic |
| TCACATGACAGAACAGGCGG+TGG | 0.625825 | tig0025770:-69166 | None:intergenic |
| CGAGAGAAAAGTGAGAAGGT+CGG | 0.626298 | tig0025770:+68834 | Msa1424620:CDS |
| TATTGATAGGAAAGCACACA+AGG | 0.639331 | tig0025770:+68888 | Msa1424620:CDS |
| GATGCGAGAGAAAAGTGAGA+AGG | 0.650873 | tig0025770:+68830 | Msa1424620:CDS |
| CACATGACAGAACAGGCGGT+GGG | 0.664346 | tig0025770:-69165 | None:intergenic |
| TTGTTTCTAACATAACCGGA+AGG | 0.675813 | tig0025770:-69054 | None:intergenic |
| TGTTGAACCTAACAAAGTGG+TGG | 0.684270 | tig0025770:+68927 | Msa1424620:CDS |
| CACACAAGGTCACTGTTCAG+GGG | 0.691299 | tig0025770:+68902 | Msa1424620:CDS |
| GGTGGTGTAGCGAACTTCGG+TGG | 0.699721 | tig0025770:-69124 | None:intergenic |
| ATATCACATGACAGAACAGG+CGG | 0.726418 | tig0025770:-69169 | None:intergenic |
| GTTGCACACCCATATGCACA+AGG | 0.727359 | tig0025770:+69012 | Msa1424620:CDS |
| GTATGTTGAACCTAACAAAG+TGG | 0.728726 | tig0025770:+68924 | Msa1424620:CDS |
| TCTCAGCCCTCTTACCAGTG+CGG | 0.734386 | tig0025770:-68963 | None:intergenic |
| AAAGTGAAGATGGACTGCGA+AGG | 0.769260 | tig0025770:+68808 | Msa1424620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAACATATGAATATGAA+TGG | - | tig0025770:68696-68715 | None:intergenic | 15.0% |
| !! | AATATATATATATGTACAGA+CGG | + | tig0025770:68777-68796 | Msa1424620:intron | 15.0% |
| !!! | ATTATTATTGTTATTAGTTG+TGG | + | tig0025770:69196-69215 | Msa1424620:three_prime_UTR | 15.0% |
| !!! | AATTTCATATAATGATTTGT+GGG | + | tig0025770:69358-69377 | Msa1424620:three_prime_UTR | 15.0% |
| !! | TAATAACATATGAATATGAA+TGG | - | tig0025770:68696-68715 | None:intergenic | 15.0% |
| !! | AATATATATATATGTACAGA+CGG | + | tig0025770:68777-68796 | Msa1424620:intron | 15.0% |
| !!! | ATTATTATTGTTATTAGTTG+TGG | + | tig0025770:69196-69215 | Msa1424620:three_prime_UTR | 15.0% |
| !!! | AATTTCATATAATGATTTGT+GGG | + | tig0025770:69358-69377 | Msa1424620:three_prime_UTR | 15.0% |
| !! | AAGTAAAGAAAGAGATAATA+TGG | + | tig0025770:68577-68596 | Msa1424620:exon | 20.0% |
| !! | AGTAAAGAAAGAGATAATAT+GGG | + | tig0025770:68578-68597 | Msa1424620:exon | 20.0% |
| !! | AACATAGATAAATTTCCAAA+AGG | - | tig0025770:69286-69305 | None:intergenic | 20.0% |
| !! | CAATTTCATATAATGATTTG+TGG | + | tig0025770:69357-69376 | Msa1424620:three_prime_UTR | 20.0% |
| !! | AAGTAAAGAAAGAGATAATA+TGG | + | tig0025770:68577-68596 | Msa1424620:exon | 20.0% |
| !! | AGTAAAGAAAGAGATAATAT+GGG | + | tig0025770:68578-68597 | Msa1424620:exon | 20.0% |
| !! | AACATAGATAAATTTCCAAA+AGG | - | tig0025770:69286-69305 | None:intergenic | 20.0% |
| !! | CAATTTCATATAATGATTTG+TGG | + | tig0025770:69357-69376 | Msa1424620:three_prime_UTR | 20.0% |
| ! | TTTACTTACTACTAATTGCT+TGG | - | tig0025770:68564-68583 | None:intergenic | 25.0% |
| ! | ACATATGAATATGAATGGAA+TGG | - | tig0025770:68691-68710 | None:intergenic | 25.0% |
| ! | CATATAGAACAAAATGAAGT+TGG | - | tig0025770:69228-69247 | None:intergenic | 25.0% |
| !! | CAACTTCATTTTGTTCTATA+TGG | + | tig0025770:69226-69245 | Msa1424620:three_prime_UTR | 25.0% |
| !! | AAATCAAGTATTATGCCTTT+TGG | + | tig0025770:69268-69287 | Msa1424620:three_prime_UTR | 25.0% |
| ! | TGAAATTGTGAACCAATAAA+AGG | - | tig0025770:69345-69364 | None:intergenic | 25.0% |
| !!! | AATAATTTGCTCTTCTTCTT+CGG | - | tig0025770:69444-69463 | None:intergenic | 25.0% |
| ! | TTTACTTACTACTAATTGCT+TGG | - | tig0025770:68564-68583 | None:intergenic | 25.0% |
| ! | ACATATGAATATGAATGGAA+TGG | - | tig0025770:68691-68710 | None:intergenic | 25.0% |
| ! | CATATAGAACAAAATGAAGT+TGG | - | tig0025770:69228-69247 | None:intergenic | 25.0% |
| !! | CAACTTCATTTTGTTCTATA+TGG | + | tig0025770:69226-69245 | Msa1424620:three_prime_UTR | 25.0% |
| !! | AAATCAAGTATTATGCCTTT+TGG | + | tig0025770:69268-69287 | Msa1424620:three_prime_UTR | 25.0% |
| ! | TGAAATTGTGAACCAATAAA+AGG | - | tig0025770:69345-69364 | None:intergenic | 25.0% |
| !!! | AATAATTTGCTCTTCTTCTT+CGG | - | tig0025770:69444-69463 | None:intergenic | 25.0% |
| CTATTACCTGAAATTGTTTG+CGG | - | tig0025770:68661-68680 | None:intergenic | 30.0% | |
| TGAATATGAATGGAATGGAA+TGG | - | tig0025770:68686-68705 | None:intergenic | 30.0% | |
| ATATATATATGTACAGACGG+TGG | + | tig0025770:68780-68799 | Msa1424620:intron | 30.0% | |
| !! | TGAACCAAGTTGATATTGAT+AGG | + | tig0025770:68875-68894 | Msa1424620:CDS | 30.0% |
| CTTTCCTATCAATATCAACT+TGG | - | tig0025770:68882-68901 | None:intergenic | 30.0% | |
| !! | GTAGTTGTTTCTAACATAAC+CGG | - | tig0025770:69061-69080 | None:intergenic | 30.0% |
| ! | CATTTTGTTCTATATGGAGA+TGG | + | tig0025770:69232-69251 | Msa1424620:three_prime_UTR | 30.0% |
| ! | AGGTTACTACTACCTTTTAT+TGG | + | tig0025770:69330-69349 | Msa1424620:three_prime_UTR | 30.0% |
| TCTTCGGAAAATCAATGATA+AGG | - | tig0025770:69428-69447 | None:intergenic | 30.0% | |
| CTATTACCTGAAATTGTTTG+CGG | - | tig0025770:68661-68680 | None:intergenic | 30.0% | |
| TGAATATGAATGGAATGGAA+TGG | - | tig0025770:68686-68705 | None:intergenic | 30.0% | |
| ATATATATATGTACAGACGG+TGG | + | tig0025770:68780-68799 | Msa1424620:intron | 30.0% | |
| !! | TGAACCAAGTTGATATTGAT+AGG | + | tig0025770:68875-68894 | Msa1424620:CDS | 30.0% |
| CTTTCCTATCAATATCAACT+TGG | - | tig0025770:68882-68901 | None:intergenic | 30.0% | |
| !! | GTAGTTGTTTCTAACATAAC+CGG | - | tig0025770:69061-69080 | None:intergenic | 30.0% |
| ! | CATTTTGTTCTATATGGAGA+TGG | + | tig0025770:69232-69251 | Msa1424620:three_prime_UTR | 30.0% |
| ! | AGGTTACTACTACCTTTTAT+TGG | + | tig0025770:69330-69349 | Msa1424620:three_prime_UTR | 30.0% |
| TCTTCGGAAAATCAATGATA+AGG | - | tig0025770:69428-69447 | None:intergenic | 30.0% | |
| AAATTGTTTGCGGTGTTTGT+GGG | - | tig0025770:68651-68670 | None:intergenic | 35.0% | |
| ! | TATTGATAGGAAAGCACACA+AGG | + | tig0025770:68888-68907 | Msa1424620:CDS | 35.0% |
| GTATGTTGAACCTAACAAAG+TGG | + | tig0025770:68924-68943 | Msa1424620:CDS | 35.0% | |
| !! | TTGTTTCTAACATAACCGGA+AGG | - | tig0025770:69057-69076 | None:intergenic | 35.0% |
| TACGACAACAATCAGTATTC+TGG | + | tig0025770:69078-69097 | Msa1424620:CDS | 35.0% | |
| ATGATATCACATGACAGAAC+AGG | - | tig0025770:69175-69194 | None:intergenic | 35.0% | |
| TGATTCGTAGTAGTAGTAGT+AGG | + | tig0025770:69310-69329 | Msa1424620:three_prime_UTR | 35.0% | |
| CAATGATAAGGCGATTGTAA+TGG | - | tig0025770:69416-69435 | None:intergenic | 35.0% | |
| AAATTGTTTGCGGTGTTTGT+GGG | - | tig0025770:68651-68670 | None:intergenic | 35.0% | |
| ! | TATTGATAGGAAAGCACACA+AGG | + | tig0025770:68888-68907 | Msa1424620:CDS | 35.0% |
| GTATGTTGAACCTAACAAAG+TGG | + | tig0025770:68924-68943 | Msa1424620:CDS | 35.0% | |
| !! | TTGTTTCTAACATAACCGGA+AGG | - | tig0025770:69057-69076 | None:intergenic | 35.0% |
| TACGACAACAATCAGTATTC+TGG | + | tig0025770:69078-69097 | Msa1424620:CDS | 35.0% | |
| ATGATATCACATGACAGAAC+AGG | - | tig0025770:69175-69194 | None:intergenic | 35.0% | |
| TGATTCGTAGTAGTAGTAGT+AGG | + | tig0025770:69310-69329 | Msa1424620:three_prime_UTR | 35.0% | |
| CAATGATAAGGCGATTGTAA+TGG | - | tig0025770:69416-69435 | None:intergenic | 35.0% | |
| AAGAGATAATATGGGTGCTC+TGG | + | tig0025770:68586-68605 | Msa1424620:exon | 40.0% | |
| GAAATTGTTTGCGGTGTTTG+TGG | - | tig0025770:68652-68671 | None:intergenic | 40.0% | |
| CAAACACCGCAAACAATTTC+AGG | + | tig0025770:68652-68671 | Msa1424620:CDS | 40.0% | |
| TGTTGAACCTAACAAAGTGG+TGG | + | tig0025770:68927-68946 | Msa1424620:CDS | 40.0% | |
| ATATCACATGACAGAACAGG+CGG | - | tig0025770:69172-69191 | None:intergenic | 40.0% | |
| AAGAGATAATATGGGTGCTC+TGG | + | tig0025770:68586-68605 | Msa1424620:exon | 40.0% | |
| GAAATTGTTTGCGGTGTTTG+TGG | - | tig0025770:68652-68671 | None:intergenic | 40.0% | |
| CAAACACCGCAAACAATTTC+AGG | + | tig0025770:68652-68671 | Msa1424620:CDS | 40.0% | |
| TGTTGAACCTAACAAAGTGG+TGG | + | tig0025770:68927-68946 | Msa1424620:CDS | 40.0% | |
| ATATCACATGACAGAACAGG+CGG | - | tig0025770:69172-69191 | None:intergenic | 40.0% | |
| TCTGAGCTATTTGACTGCTC+CGG | + | tig0025770:68617-68636 | Msa1424620:CDS | 45.0% | |
| GGTGGAAGTGAAAGTGAAGA+TGG | + | tig0025770:68798-68817 | Msa1424620:CDS | 45.0% | |
| !! | AAAGTGAAGATGGACTGCGA+AGG | + | tig0025770:68808-68827 | Msa1424620:CDS | 45.0% |
| GATGCGAGAGAAAAGTGAGA+AGG | + | tig0025770:68830-68849 | Msa1424620:CDS | 45.0% | |
| CGAGAGAAAAGTGAGAAGGT+CGG | + | tig0025770:68834-68853 | Msa1424620:CDS | 45.0% | |
| ACGACGTCGTATGGAACATA+TGG | - | tig0025770:68994-69013 | None:intergenic | 45.0% | |
| CGTACGTACCTTGTGCATAT+GGG | - | tig0025770:69023-69042 | None:intergenic | 45.0% | |
| TCGTACGTACCTTGTGCATA+TGG | - | tig0025770:69024-69043 | None:intergenic | 45.0% | |
| !! | TACGACAAGAAAGCACCTTC+CGG | + | tig0025770:69039-69058 | Msa1424620:CDS | 45.0% |
| TCAGTATTCTGGATCCCATC+TGG | + | tig0025770:69089-69108 | Msa1424620:CDS | 45.0% | |
| TCTGAGCTATTTGACTGCTC+CGG | + | tig0025770:68617-68636 | Msa1424620:CDS | 45.0% | |
| GGTGGAAGTGAAAGTGAAGA+TGG | + | tig0025770:68798-68817 | Msa1424620:CDS | 45.0% | |
| !! | AAAGTGAAGATGGACTGCGA+AGG | + | tig0025770:68808-68827 | Msa1424620:CDS | 45.0% |
| GATGCGAGAGAAAAGTGAGA+AGG | + | tig0025770:68830-68849 | Msa1424620:CDS | 45.0% | |
| CGAGAGAAAAGTGAGAAGGT+CGG | + | tig0025770:68834-68853 | Msa1424620:CDS | 45.0% | |
| ACGACGTCGTATGGAACATA+TGG | - | tig0025770:68994-69013 | None:intergenic | 45.0% | |
| CGTACGTACCTTGTGCATAT+GGG | - | tig0025770:69023-69042 | None:intergenic | 45.0% | |
| TCGTACGTACCTTGTGCATA+TGG | - | tig0025770:69024-69043 | None:intergenic | 45.0% | |
| !! | TACGACAAGAAAGCACCTTC+CGG | + | tig0025770:69039-69058 | Msa1424620:CDS | 45.0% |
| TCAGTATTCTGGATCCCATC+TGG | + | tig0025770:69089-69108 | Msa1424620:CDS | 45.0% | |
| GTGTTTGTGGGAACTTCCAC+CGG | - | tig0025770:68639-68658 | None:intergenic | 50.0% | |
| GAGAAAAGTGAGAAGGTCGG+TGG | + | tig0025770:68837-68856 | Msa1424620:CDS | 50.0% | |
| AAAGTGAGAAGGTCGGTGGA+AGG | + | tig0025770:68841-68860 | Msa1424620:CDS | 50.0% | |
| AGGTCGGTGGAAGGAATGAA+AGG | + | tig0025770:68850-68869 | Msa1424620:CDS | 50.0% | |
| AGCACACAAGGTCACTGTTC+AGG | + | tig0025770:68900-68919 | Msa1424620:CDS | 50.0% | |
| GCACACAAGGTCACTGTTCA+GGG | + | tig0025770:68901-68920 | Msa1424620:CDS | 50.0% | |
| CACACAAGGTCACTGTTCAG+GGG | + | tig0025770:68902-68921 | Msa1424620:CDS | 50.0% | |
| ATACGCGCCACCACTTTGTT+AGG | - | tig0025770:68937-68956 | None:intergenic | 50.0% | |
| CTGGTAAGAGGGCTGAGATA+TGG | + | tig0025770:68968-68987 | Msa1424620:CDS | 50.0% | |
| GTTGCACACCCATATGCACA+AGG | + | tig0025770:69012-69031 | Msa1424620:CDS | 50.0% | |
| ! | ATTTTCGTCGCTGAAAGCGG+TGG | - | tig0025770:69145-69164 | None:intergenic | 50.0% |
| ! | GGGATTTTCGTCGCTGAAAG+CGG | - | tig0025770:69148-69167 | None:intergenic | 50.0% |
| GTGTTTGTGGGAACTTCCAC+CGG | - | tig0025770:68639-68658 | None:intergenic | 50.0% | |
| GAGAAAAGTGAGAAGGTCGG+TGG | + | tig0025770:68837-68856 | Msa1424620:CDS | 50.0% | |
| AAAGTGAGAAGGTCGGTGGA+AGG | + | tig0025770:68841-68860 | Msa1424620:CDS | 50.0% | |
| AGGTCGGTGGAAGGAATGAA+AGG | + | tig0025770:68850-68869 | Msa1424620:CDS | 50.0% | |
| AGCACACAAGGTCACTGTTC+AGG | + | tig0025770:68900-68919 | Msa1424620:CDS | 50.0% | |
| GCACACAAGGTCACTGTTCA+GGG | + | tig0025770:68901-68920 | Msa1424620:CDS | 50.0% | |
| CACACAAGGTCACTGTTCAG+GGG | + | tig0025770:68902-68921 | Msa1424620:CDS | 50.0% | |
| ATACGCGCCACCACTTTGTT+AGG | - | tig0025770:68937-68956 | None:intergenic | 50.0% | |
| CTGGTAAGAGGGCTGAGATA+TGG | + | tig0025770:68968-68987 | Msa1424620:CDS | 50.0% | |
| GTTGCACACCCATATGCACA+AGG | + | tig0025770:69012-69031 | Msa1424620:CDS | 50.0% | |
| ! | ATTTTCGTCGCTGAAAGCGG+TGG | - | tig0025770:69145-69164 | None:intergenic | 50.0% |
| ! | GGGATTTTCGTCGCTGAAAG+CGG | - | tig0025770:69148-69167 | None:intergenic | 50.0% |
| GAGCTATTTGACTGCTCCGG+TGG | + | tig0025770:68620-68639 | Msa1424620:CDS | 55.0% | |
| TCTCAGCCCTCTTACCAGTG+CGG | - | tig0025770:68966-68985 | None:intergenic | 55.0% | |
| AGCGGTGGTGTAGCGAACTT+CGG | - | tig0025770:69130-69149 | None:intergenic | 55.0% | |
| CACATGACAGAACAGGCGGT+GGG | - | tig0025770:69168-69187 | None:intergenic | 55.0% | |
| TCACATGACAGAACAGGCGG+TGG | - | tig0025770:69169-69188 | None:intergenic | 55.0% | |
| GAGCTATTTGACTGCTCCGG+TGG | + | tig0025770:68620-68639 | Msa1424620:CDS | 55.0% | |
| TCTCAGCCCTCTTACCAGTG+CGG | - | tig0025770:68966-68985 | None:intergenic | 55.0% | |
| AGCGGTGGTGTAGCGAACTT+CGG | - | tig0025770:69130-69149 | None:intergenic | 55.0% | |
| CACATGACAGAACAGGCGGT+GGG | - | tig0025770:69168-69187 | None:intergenic | 55.0% | |
| TCACATGACAGAACAGGCGG+TGG | - | tig0025770:69169-69188 | None:intergenic | 55.0% | |
| ! | TCGCTCACCGCACTGGTAAG+AGG | + | tig0025770:68956-68975 | Msa1424620:CDS | 60.0% |
| ! | CGCTCACCGCACTGGTAAGA+GGG | + | tig0025770:68957-68976 | Msa1424620:CDS | 60.0% |
| GGGTGTGCAACGACGTCGTA+TGG | - | tig0025770:69003-69022 | None:intergenic | 60.0% | |
| GGAACTAGCACGCGCCAGAT+GGG | - | tig0025770:69106-69125 | None:intergenic | 60.0% | |
| TGGAACTAGCACGCGCCAGA+TGG | - | tig0025770:69107-69126 | None:intergenic | 60.0% | |
| GGTGGTGTAGCGAACTTCGG+TGG | - | tig0025770:69127-69146 | None:intergenic | 60.0% | |
| ! | TCGCTCACCGCACTGGTAAG+AGG | + | tig0025770:68956-68975 | Msa1424620:CDS | 60.0% |
| ! | CGCTCACCGCACTGGTAAGA+GGG | + | tig0025770:68957-68976 | Msa1424620:CDS | 60.0% |
| GGGTGTGCAACGACGTCGTA+TGG | - | tig0025770:69003-69022 | None:intergenic | 60.0% | |
| GGAACTAGCACGCGCCAGAT+GGG | - | tig0025770:69106-69125 | None:intergenic | 60.0% | |
| TGGAACTAGCACGCGCCAGA+TGG | - | tig0025770:69107-69126 | None:intergenic | 60.0% | |
| GGTGGTGTAGCGAACTTCGG+TGG | - | tig0025770:69127-69146 | None:intergenic | 60.0% | |
| GCGCGTATCGCTCACCGCAC+TGG | + | tig0025770:68949-68968 | Msa1424620:CDS | 70.0% | |
| GCGCGTATCGCTCACCGCAC+TGG | + | tig0025770:68949-68968 | Msa1424620:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0025770 | gene | 68509 | 69471 | 68509 | ID=Msa1424620;Name=Msa1424620 |
| tig0025770 | mRNA | 68509 | 69471 | 68509 | ID=Msa1424620-mRNA-1;Parent=Msa1424620;Name=Msa1424620-mRNA-1;_AED=0.01;_eAED=0.01;_QI=87|1|1|1|1|1|2|283|156 |
| tig0025770 | exon | 68509 | 68673 | 68509 | ID=Msa1424620-mRNA-1:exon:3833;Parent=Msa1424620-mRNA-1 |
| tig0025770 | exon | 68796 | 69471 | 68796 | ID=Msa1424620-mRNA-1:exon:3834;Parent=Msa1424620-mRNA-1 |
| tig0025770 | five_prime_UTR | 68509 | 68595 | 68509 | ID=Msa1424620-mRNA-1:five_prime_utr;Parent=Msa1424620-mRNA-1 |
| tig0025770 | CDS | 68596 | 68673 | 68596 | ID=Msa1424620-mRNA-1:cds;Parent=Msa1424620-mRNA-1 |
| tig0025770 | CDS | 68796 | 69188 | 68796 | ID=Msa1424620-mRNA-1:cds;Parent=Msa1424620-mRNA-1 |
| tig0025770 | three_prime_UTR | 69189 | 69471 | 69189 | ID=Msa1424620-mRNA-1:three_prime_utr;Parent=Msa1424620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
