Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524400 | XP_003604043.1 | 98.718 | 156 | 2 | 0 | 1 | 156 | 1 | 156 | 2.69e-112 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524400 | sp|Q9SZN7|HIP26_ARATH | 76.282 | 156 | 34 | 1 | 1 | 156 | 1 | 153 | 1.09e-83 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524400 | G7J8I5 | 98.718 | 156 | 2 | 0 | 1 | 156 | 1 | 156 | 1.29e-112 | 325 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0186310 | Msa0524400 | 0.819478 | 1.137104e-52 | -8.615850e-47 |
| Msa0231660 | Msa0524400 | 0.805657 | 1.200938e-49 | -8.615850e-47 |
| Msa0386040 | Msa0524400 | 0.834085 | 3.673992e-56 | -8.615850e-47 |
| Msa0387910 | Msa0524400 | 0.819325 | 1.232613e-52 | -8.615850e-47 |
| Msa0421260 | Msa0524400 | 0.805807 | 1.116937e-49 | -8.615850e-47 |
| Msa0436920 | Msa0524400 | -0.810408 | 1.170174e-50 | -8.615850e-47 |
| Msa0467220 | Msa0524400 | 0.818016 | 2.442213e-52 | -8.615850e-47 |
| Msa0251230 | Msa0524400 | 0.807495 | 4.916265e-50 | -8.615850e-47 |
| Msa0524290 | Msa0524400 | 0.993632 | 4.214843e-201 | -8.615850e-47 |
| Msa0524400 | Msa0602370 | 0.835040 | 2.114625e-56 | -8.615850e-47 |
| Msa0524400 | Msa0643320 | 0.827313 | 1.675887e-54 | -8.615850e-47 |
| Msa0524400 | Msa0683140 | 0.836533 | 8.853070e-57 | -8.615850e-47 |
| Msa0524400 | Msa0683600 | 0.834540 | 2.825359e-56 | -8.615850e-47 |
| Msa0524400 | Msa1088290 | 0.819668 | 1.028967e-52 | -8.615850e-47 |
| Msa0524400 | Msa1133230 | 0.807762 | 4.315164e-50 | -8.615850e-47 |
| Msa0524400 | Msa1133250 | 0.812454 | 4.204958e-51 | -8.615850e-47 |
| Msa0524400 | Msa1364940 | 0.991667 | 6.973575e-189 | -8.615850e-47 |
| Msa0524400 | Msa1367490 | 0.990856 | 1.150936e-184 | -8.615850e-47 |
| Msa0524400 | Msa1417570 | 0.969216 | 8.475748e-130 | -8.615850e-47 |
| Msa0524400 | Msa1422810 | 0.817031 | 4.071364e-52 | -8.615850e-47 |
| Msa0524400 | Msa1424620 | 0.991553 | 2.909552e-188 | -8.615850e-47 |
| Msa0524400 | Msa1435520 | 0.950821 | 7.446346e-109 | -8.615850e-47 |
| Msa0524400 | Msa1454950 | 0.820774 | 5.743716e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524400 | MtrunA17_Chr3g0145621 | 98.718 | 156 | 2 | 0 | 1 | 156 | 1 | 156 | 2.48e-116 | 325 |
| Msa0524400 | MtrunA17_Chr4g0036931 | 79.245 | 159 | 27 | 3 | 1 | 156 | 1 | 156 | 1.70e-88 | 254 |
| Msa0524400 | MtrunA17_Chr5g0405811 | 61.491 | 161 | 53 | 3 | 1 | 156 | 1 | 157 | 7.73e-66 | 197 |
| Msa0524400 | MtrunA17_Chr1g0160201 | 53.205 | 156 | 64 | 3 | 1 | 156 | 1 | 147 | 1.24e-53 | 166 |
| Msa0524400 | MtrunA17_Chr8g0382721 | 51.613 | 155 | 69 | 3 | 2 | 156 | 5 | 153 | 4.19e-49 | 155 |
| Msa0524400 | MtrunA17_Chr3g0124411 | 51.923 | 156 | 66 | 4 | 2 | 156 | 5 | 152 | 4.89e-49 | 155 |
| Msa0524400 | MtrunA17_Chr5g0407821 | 47.436 | 156 | 71 | 3 | 1 | 156 | 1 | 145 | 1.22e-45 | 146 |
| Msa0524400 | MtrunA17_Chr6g0448861 | 45.062 | 162 | 76 | 3 | 1 | 156 | 1 | 155 | 5.20e-45 | 145 |
| Msa0524400 | MtrunA17_Chr7g0251491 | 48.077 | 156 | 71 | 3 | 1 | 156 | 25 | 170 | 6.43e-45 | 145 |
| Msa0524400 | MtrunA17_Chr3g0115421 | 47.742 | 155 | 71 | 3 | 2 | 156 | 5 | 149 | 2.20e-42 | 138 |
| Msa0524400 | MtrunA17_Chr5g0422891 | 37.821 | 156 | 88 | 3 | 1 | 156 | 1 | 147 | 9.31e-35 | 118 |
| Msa0524400 | MtrunA17_Chr2g0325601 | 36.429 | 140 | 77 | 3 | 28 | 156 | 4 | 142 | 3.24e-22 | 86.3 |
| Msa0524400 | MtrunA17_Chr1g0189221 | 42.157 | 102 | 54 | 2 | 25 | 122 | 52 | 152 | 1.45e-20 | 83.2 |
| Msa0524400 | MtrunA17_Chr6g0471231 | 36.364 | 143 | 70 | 6 | 28 | 156 | 5 | 140 | 3.83e-18 | 75.9 |
| Msa0524400 | MtrunA17_Chr7g0218981 | 48.485 | 66 | 33 | 1 | 26 | 91 | 4 | 68 | 2.98e-14 | 65.5 |
| Msa0524400 | MtrunA17_Chr3g0094841 | 34.586 | 133 | 74 | 3 | 26 | 156 | 116 | 237 | 3.22e-14 | 67.4 |
| Msa0524400 | MtrunA17_Chr1g0192131 | 36.765 | 68 | 43 | 0 | 25 | 92 | 14 | 81 | 1.95e-12 | 63.5 |
| Msa0524400 | MtrunA17_Chr1g0198341 | 45.455 | 66 | 35 | 1 | 26 | 91 | 4 | 68 | 3.47e-12 | 58.9 |
| Msa0524400 | MtrunA17_Chr7g0269081 | 36.765 | 68 | 42 | 1 | 24 | 91 | 20 | 86 | 5.05e-12 | 62.4 |
| Msa0524400 | MtrunA17_Chr7g0272571 | 42.857 | 63 | 35 | 1 | 30 | 92 | 37 | 98 | 7.76e-12 | 62.0 |
| Msa0524400 | MtrunA17_Chr6g0460361 | 37.273 | 110 | 61 | 6 | 52 | 156 | 4 | 110 | 1.39e-11 | 58.2 |
| Msa0524400 | MtrunA17_Chr3g0080011 | 55.769 | 52 | 21 | 2 | 1 | 52 | 25 | 74 | 2.51e-11 | 57.0 |
| Msa0524400 | MtrunA17_Chr1g0208301 | 39.706 | 68 | 40 | 1 | 24 | 91 | 11 | 77 | 2.83e-11 | 60.5 |
| Msa0524400 | MtrunA17_Chr3g0111541 | 41.538 | 65 | 37 | 1 | 26 | 90 | 12 | 75 | 3.76e-11 | 58.9 |
| Msa0524400 | MtrunA17_Chr7g0263491 | 46.269 | 67 | 34 | 1 | 26 | 92 | 209 | 273 | 6.49e-11 | 58.9 |
| Msa0524400 | MtrunA17_Chr8g0386231 | 44.776 | 67 | 36 | 1 | 30 | 95 | 55 | 121 | 9.34e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524400 | AT4G38580.1 | 76.282 | 156 | 34 | 1 | 1 | 156 | 1 | 153 | 1.11e-84 | 245 |
| Msa0524400 | AT4G38580.2 | 76.282 | 156 | 34 | 1 | 1 | 156 | 1 | 153 | 1.11e-84 | 245 |
| Msa0524400 | AT4G35060.1 | 70.701 | 157 | 41 | 3 | 1 | 156 | 1 | 153 | 1.89e-76 | 224 |
| Msa0524400 | AT5G66110.3 | 66.667 | 138 | 44 | 1 | 19 | 156 | 12 | 147 | 2.19e-66 | 199 |
| Msa0524400 | AT5G66110.1 | 66.667 | 138 | 44 | 1 | 19 | 156 | 12 | 147 | 2.19e-66 | 199 |
| Msa0524400 | AT5G66110.2 | 65.854 | 123 | 40 | 1 | 34 | 156 | 1 | 121 | 1.48e-58 | 178 |
| Msa0524400 | AT1G71050.1 | 56.329 | 158 | 61 | 4 | 1 | 156 | 1 | 152 | 9.65e-54 | 167 |
| Msa0524400 | AT1G22990.1 | 49.057 | 159 | 71 | 2 | 1 | 156 | 1 | 152 | 2.00e-50 | 159 |
| Msa0524400 | AT1G22990.2 | 46.795 | 156 | 74 | 2 | 1 | 156 | 1 | 147 | 2.35e-47 | 150 |
| Msa0524400 | AT4G39700.1 | 48.734 | 158 | 74 | 4 | 2 | 156 | 5 | 158 | 1.24e-44 | 144 |
| Msa0524400 | AT5G17450.1 | 45.860 | 157 | 76 | 3 | 1 | 156 | 1 | 149 | 1.48e-42 | 139 |
| Msa0524400 | AT4G08570.1 | 44.231 | 156 | 76 | 4 | 2 | 156 | 5 | 150 | 3.29e-40 | 132 |
| Msa0524400 | AT5G17450.2 | 43.396 | 106 | 51 | 3 | 52 | 156 | 8 | 105 | 1.51e-25 | 94.4 |
| Msa0524400 | AT1G06330.1 | 38.000 | 150 | 71 | 6 | 27 | 156 | 3 | 150 | 4.89e-24 | 91.7 |
| Msa0524400 | AT2G18196.1 | 33.824 | 136 | 84 | 4 | 25 | 156 | 45 | 178 | 4.05e-20 | 82.4 |
| Msa0524400 | AT4G10465.1 | 33.566 | 143 | 89 | 3 | 18 | 156 | 43 | 183 | 1.81e-19 | 80.9 |
| Msa0524400 | AT3G56891.1 | 32.544 | 169 | 89 | 6 | 10 | 156 | 1 | 166 | 1.57e-18 | 77.8 |
| Msa0524400 | AT2G18196.2 | 33.071 | 127 | 79 | 4 | 34 | 156 | 1 | 125 | 2.37e-16 | 71.2 |
| Msa0524400 | AT3G56891.2 | 33.103 | 145 | 73 | 5 | 34 | 156 | 1 | 143 | 3.70e-16 | 71.2 |
| Msa0524400 | AT1G29100.2 | 33.974 | 156 | 65 | 4 | 27 | 156 | 4 | 147 | 1.26e-15 | 69.7 |
| Msa0524400 | AT1G29100.1 | 33.333 | 153 | 64 | 4 | 30 | 156 | 1 | 141 | 3.31e-14 | 65.9 |
| Msa0524400 | AT1G56210.1 | 39.744 | 78 | 46 | 1 | 25 | 102 | 39 | 115 | 9.07e-13 | 65.1 |
| Msa0524400 | AT1G66240.1 | 43.939 | 66 | 36 | 1 | 26 | 91 | 33 | 97 | 1.20e-12 | 60.8 |
| Msa0524400 | AT3G56240.3 | 47.761 | 67 | 34 | 1 | 26 | 92 | 3 | 68 | 2.19e-12 | 60.8 |
| Msa0524400 | AT3G56240.1 | 47.761 | 67 | 34 | 1 | 26 | 92 | 3 | 68 | 2.19e-12 | 60.8 |
| Msa0524400 | AT3G02960.1 | 28.571 | 133 | 85 | 2 | 24 | 156 | 124 | 246 | 4.53e-12 | 62.4 |
| Msa0524400 | AT5G27690.1 | 39.130 | 69 | 41 | 1 | 24 | 92 | 28 | 95 | 1.74e-11 | 61.2 |
| Msa0524400 | AT3G06130.2 | 39.706 | 68 | 40 | 1 | 24 | 91 | 8 | 74 | 4.40e-11 | 60.1 |
Find 61 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTAAAGAAAGAGATAATA+TGG | 0.220139 | 3_4:-77866385 | Msa0524400:exon |
| AAATCAAGTATTATGCCTTT+TGG | 0.248220 | 3_4:-77865736 | Msa0524400:three_prime_UTR |
| CAAACACCGCAAACAATTTC+AGG | 0.262177 | 3_4:-77866310 | Msa0524400:intron |
| TGAAATTGTGAACCAATAAA+AGG | 0.317677 | 3_4:+77865665 | None:intergenic |
| AGCACACAAGGTCACTGTTC+AGG | 0.319616 | 3_4:-77866104 | Msa0524400:CDS |
| AATAATTTGCTCTTCTTCTT+CGG | 0.323900 | 3_4:+77865566 | None:intergenic |
| TCGTACGTACCTTGTGCATA+TGG | 0.340646 | 3_4:+77865983 | None:intergenic |
| TACGACAACAATCAGTATTC+TGG | 0.342642 | 3_4:-77865926 | Msa0524400:CDS |
| ATACGCGCCACCACTTTGTT+AGG | 0.355486 | 3_4:+77866070 | None:intergenic |
| TTTACTTACTACTAATTGCT+TGG | 0.381220 | 3_4:+77866401 | None:intergenic |
| TCTTCGGAAAATCAATGATA+AGG | 0.403344 | 3_4:+77865582 | None:intergenic |
| TCGCTCACCGCACTGGTAAG+AGG | 0.420324 | 3_4:-77866048 | Msa0524400:CDS |
| CTTTCCTATCAATATCAACT+TGG | 0.425944 | 3_4:+77866125 | None:intergenic |
| GTAGTTGTTTCTAACATAAC+CGG | 0.435319 | 3_4:+77865946 | None:intergenic |
| CAATTTCATATAATGATTTG+TGG | 0.435765 | 3_4:-77865650 | Msa0524400:three_prime_UTR |
| AAGAGATAATATGGGTGCTC+TGG | 0.436844 | 3_4:-77866376 | Msa0524400:exon |
| GGGTGTGCAACGACGTCGTA+TGG | 0.444075 | 3_4:+77866004 | None:intergenic |
| AATTTCATATAATGATTTGT+GGG | 0.444929 | 3_4:-77865649 | Msa0524400:three_prime_UTR |
| ATTATTATTGTTATTAGTTG+TGG | 0.451022 | 3_4:-77865808 | Msa0524400:three_prime_UTR |
| TGATTCGTAGTAGTAGTAGT+AGG | 0.452275 | 3_4:-77865694 | Msa0524400:three_prime_UTR |
| CATATAGAACAAAATGAAGT+TGG | 0.453237 | 3_4:+77865779 | None:intergenic |
| CTATTACCTGAAATTGTTTG+CGG | 0.461292 | 3_4:+77866304 | None:intergenic |
| GAAATTGTTTGCGGTGTTTG+TGG | 0.465422 | 3_4:+77866313 | None:intergenic |
| CAATGATAAGGCGATTGTAA+TGG | 0.466760 | 3_4:+77865594 | None:intergenic |
| ACGACGTCGTATGGAACATA+TGG | 0.471597 | 3_4:+77866013 | None:intergenic |
| TCAGTATTCTGGATCCCATC+TGG | 0.473879 | 3_4:-77865915 | Msa0524400:CDS |
| TGAACCAAGTTGATATTGAT+AGG | 0.475748 | 3_4:-77866129 | Msa0524400:CDS |
| AAATTGTTTGCGGTGTTTGT+GGG | 0.476948 | 3_4:+77866314 | None:intergenic |
| GCACACAAGGTCACTGTTCA+GGG | 0.478112 | 3_4:-77866103 | Msa0524400:CDS |
| TACGACAAGAAAGCACCTTC+CGG | 0.490150 | 3_4:-77865965 | Msa0524400:CDS |
| ATGATATCACATGACAGAAC+AGG | 0.494670 | 3_4:+77865832 | None:intergenic |
| CTGGTAAGAGGGCTGAGATA+TGG | 0.502117 | 3_4:-77866036 | Msa0524400:CDS |
| AACATAGATAAATTTCCAAA+AGG | 0.506301 | 3_4:+77865721 | None:intergenic |
| CGTACGTACCTTGTGCATAT+GGG | 0.507821 | 3_4:+77865984 | None:intergenic |
| GTGTTTGTGGGAACTTCCAC+CGG | 0.512215 | 3_4:+77866326 | None:intergenic |
| AGTAAAGAAAGAGATAATAT+GGG | 0.512889 | 3_4:-77866384 | Msa0524400:exon |
| TGGAACTAGCACGCGCCAGA+TGG | 0.513296 | 3_4:+77865900 | None:intergenic |
| GCGCGTATCGCTCACCGCAC+TGG | 0.514553 | 3_4:-77866055 | Msa0524400:CDS |
| CGCTCACCGCACTGGTAAGA+GGG | 0.517783 | 3_4:-77866047 | Msa0524400:CDS |
| TCTGAGCTATTTGACTGCTC+CGG | 0.534149 | 3_4:-77866345 | Msa0524400:CDS |
| AAAGTGAGAAGGTCGGTGGA+AGG | 0.544215 | 3_4:-77866163 | Msa0524400:CDS |
| GGTGGAAGTGAAAGTGAAGA+TGG | 0.547212 | 3_4:-77866206 | Msa0524400:CDS |
| GAGCTATTTGACTGCTCCGG+TGG | 0.554467 | 3_4:-77866342 | Msa0524400:CDS |
| GGAACTAGCACGCGCCAGAT+GGG | 0.557432 | 3_4:+77865901 | None:intergenic |
| AGGTCGGTGGAAGGAATGAA+AGG | 0.586836 | 3_4:-77866154 | Msa0524400:CDS |
| GAGAAAAGTGAGAAGGTCGG+TGG | 0.602080 | 3_4:-77866167 | Msa0524400:CDS |
| AGCGGTGGTGTAGCGAACTT+CGG | 0.605621 | 3_4:+77865877 | None:intergenic |
| TCACATGACAGAACAGGCGG+TGG | 0.625825 | 3_4:+77865838 | None:intergenic |
| CGAGAGAAAAGTGAGAAGGT+CGG | 0.626298 | 3_4:-77866170 | Msa0524400:CDS |
| TATTGATAGGAAAGCACACA+AGG | 0.639331 | 3_4:-77866116 | Msa0524400:CDS |
| GATGCGAGAGAAAAGTGAGA+AGG | 0.650873 | 3_4:-77866174 | Msa0524400:CDS |
| CACATGACAGAACAGGCGGT+GGG | 0.664346 | 3_4:+77865839 | None:intergenic |
| TTGTTTCTAACATAACCGGA+AGG | 0.675813 | 3_4:+77865950 | None:intergenic |
| TGTTGAACCTAACAAAGTGG+TGG | 0.684270 | 3_4:-77866077 | Msa0524400:CDS |
| CACACAAGGTCACTGTTCAG+GGG | 0.691299 | 3_4:-77866102 | Msa0524400:CDS |
| GGTGGTGTAGCGAACTTCGG+TGG | 0.699721 | 3_4:+77865880 | None:intergenic |
| ATATCACATGACAGAACAGG+CGG | 0.726418 | 3_4:+77865835 | None:intergenic |
| GTTGCACACCCATATGCACA+AGG | 0.727359 | 3_4:-77865992 | Msa0524400:CDS |
| GTATGTTGAACCTAACAAAG+TGG | 0.728726 | 3_4:-77866080 | Msa0524400:CDS |
| TCTCAGCCCTCTTACCAGTG+CGG | 0.734386 | 3_4:+77866041 | None:intergenic |
| AAAGTGAAGATGGACTGCGA+AGG | 0.769260 | 3_4:-77866196 | Msa0524400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAACATATGAATATGAA+TGG | + | chr3_4:77865737-77865756 | None:intergenic | 15.0% |
| !! | TATATATATATATGTACAGA+CGG | - | chr3_4:77865781-77865800 | Msa0524400:three_prime_UTR | 15.0% |
| !!! | ATTATTATTGTTATTAGTTG+TGG | - | chr3_4:77866200-77866219 | Msa0524400:CDS | 15.0% |
| !!! | AATTTCATATAATGATTTGT+GGG | - | chr3_4:77866359-77866378 | Msa0524400:CDS | 15.0% |
| !! | TAATAACATATGAATATGAA+TGG | + | chr3_4:77865737-77865756 | None:intergenic | 15.0% |
| !! | TATATATATATATGTACAGA+CGG | - | chr3_4:77865781-77865800 | Msa0524400:three_prime_UTR | 15.0% |
| !!! | ATTATTATTGTTATTAGTTG+TGG | - | chr3_4:77866200-77866219 | Msa0524400:CDS | 15.0% |
| !!! | AATTTCATATAATGATTTGT+GGG | - | chr3_4:77866359-77866378 | Msa0524400:CDS | 15.0% |
| !! | AAGTAAAGAAAGAGATAATA+TGG | - | chr3_4:77865623-77865642 | Msa0524400:three_prime_UTR | 20.0% |
| !! | AGTAAAGAAAGAGATAATAT+GGG | - | chr3_4:77865624-77865643 | Msa0524400:three_prime_UTR | 20.0% |
| !! | AACATAGATAAATTTCCAAA+AGG | + | chr3_4:77866290-77866309 | None:intergenic | 20.0% |
| !! | CAATTTCATATAATGATTTG+TGG | - | chr3_4:77866358-77866377 | Msa0524400:CDS | 20.0% |
| !! | AAGTAAAGAAAGAGATAATA+TGG | - | chr3_4:77865623-77865642 | Msa0524400:three_prime_UTR | 20.0% |
| !! | AGTAAAGAAAGAGATAATAT+GGG | - | chr3_4:77865624-77865643 | Msa0524400:three_prime_UTR | 20.0% |
| !! | AACATAGATAAATTTCCAAA+AGG | + | chr3_4:77866290-77866309 | None:intergenic | 20.0% |
| !! | CAATTTCATATAATGATTTG+TGG | - | chr3_4:77866358-77866377 | Msa0524400:CDS | 20.0% |
| ! | TTTACTTACTACTAATTGCT+TGG | + | chr3_4:77865610-77865629 | None:intergenic | 25.0% |
| ! | ACATATGAATATGAATGGAA+TGG | + | chr3_4:77865732-77865751 | None:intergenic | 25.0% |
| ! | CATATAGAACAAAATGAAGT+TGG | + | chr3_4:77866232-77866251 | None:intergenic | 25.0% |
| !! | CAACTTCATTTTGTTCTATA+TGG | - | chr3_4:77866230-77866249 | Msa0524400:intron | 25.0% |
| !! | AAATCAAGTATTATGCCTTT+TGG | - | chr3_4:77866272-77866291 | Msa0524400:intron | 25.0% |
| ! | TGAAATTGTGAACCAATAAA+AGG | + | chr3_4:77866346-77866365 | None:intergenic | 25.0% |
| !!! | AATAATTTGCTCTTCTTCTT+CGG | + | chr3_4:77866445-77866464 | None:intergenic | 25.0% |
| ! | TTTACTTACTACTAATTGCT+TGG | + | chr3_4:77865610-77865629 | None:intergenic | 25.0% |
| ! | ACATATGAATATGAATGGAA+TGG | + | chr3_4:77865732-77865751 | None:intergenic | 25.0% |
| ! | CATATAGAACAAAATGAAGT+TGG | + | chr3_4:77866232-77866251 | None:intergenic | 25.0% |
| !! | CAACTTCATTTTGTTCTATA+TGG | - | chr3_4:77866230-77866249 | Msa0524400:intron | 25.0% |
| !! | AAATCAAGTATTATGCCTTT+TGG | - | chr3_4:77866272-77866291 | Msa0524400:intron | 25.0% |
| ! | TGAAATTGTGAACCAATAAA+AGG | + | chr3_4:77866346-77866365 | None:intergenic | 25.0% |
| !!! | AATAATTTGCTCTTCTTCTT+CGG | + | chr3_4:77866445-77866464 | None:intergenic | 25.0% |
| CTATTACCTGAAATTGTTTG+CGG | + | chr3_4:77865707-77865726 | None:intergenic | 30.0% | |
| ATATATATATGTACAGACGG+TGG | - | chr3_4:77865784-77865803 | Msa0524400:three_prime_UTR | 30.0% | |
| !! | TGAACCAAGTTGATATTGAT+AGG | - | chr3_4:77865879-77865898 | Msa0524400:CDS | 30.0% |
| CTTTCCTATCAATATCAACT+TGG | + | chr3_4:77865886-77865905 | None:intergenic | 30.0% | |
| !! | GTAGTTGTTTCTAACATAAC+CGG | + | chr3_4:77866065-77866084 | None:intergenic | 30.0% |
| ! | CATTTTGTTCTATATGGAGA+TGG | - | chr3_4:77866236-77866255 | Msa0524400:intron | 30.0% |
| ! | AGTAGGTTACTACCTTTTAT+TGG | - | chr3_4:77866331-77866350 | Msa0524400:CDS | 30.0% |
| TCTTCGGAAAATCAATGATA+AGG | + | chr3_4:77866429-77866448 | None:intergenic | 30.0% | |
| CTATTACCTGAAATTGTTTG+CGG | + | chr3_4:77865707-77865726 | None:intergenic | 30.0% | |
| ATATATATATGTACAGACGG+TGG | - | chr3_4:77865784-77865803 | Msa0524400:three_prime_UTR | 30.0% | |
| !! | TGAACCAAGTTGATATTGAT+AGG | - | chr3_4:77865879-77865898 | Msa0524400:CDS | 30.0% |
| CTTTCCTATCAATATCAACT+TGG | + | chr3_4:77865886-77865905 | None:intergenic | 30.0% | |
| !! | GTAGTTGTTTCTAACATAAC+CGG | + | chr3_4:77866065-77866084 | None:intergenic | 30.0% |
| ! | CATTTTGTTCTATATGGAGA+TGG | - | chr3_4:77866236-77866255 | Msa0524400:intron | 30.0% |
| ! | AGTAGGTTACTACCTTTTAT+TGG | - | chr3_4:77866331-77866350 | Msa0524400:CDS | 30.0% |
| TCTTCGGAAAATCAATGATA+AGG | + | chr3_4:77866429-77866448 | None:intergenic | 30.0% | |
| AAATTGTTTGCGGTGTTTGT+GGG | + | chr3_4:77865697-77865716 | None:intergenic | 35.0% | |
| ! | TATTGATAGGAAAGCACACA+AGG | - | chr3_4:77865892-77865911 | Msa0524400:CDS | 35.0% |
| GTATGTTGAACCTAACAAAG+TGG | - | chr3_4:77865928-77865947 | Msa0524400:CDS | 35.0% | |
| !! | TTGTTTCTAACATAACCGGA+AGG | + | chr3_4:77866061-77866080 | None:intergenic | 35.0% |
| TACGACAACAATCAGTATTC+TGG | - | chr3_4:77866082-77866101 | Msa0524400:CDS | 35.0% | |
| ATGATATCACATGACAGAAC+AGG | + | chr3_4:77866179-77866198 | None:intergenic | 35.0% | |
| TGATTCGTAGTAGTAGTAGT+AGG | - | chr3_4:77866314-77866333 | Msa0524400:CDS | 35.0% | |
| CAATGATAAGGCGATTGTAA+TGG | + | chr3_4:77866417-77866436 | None:intergenic | 35.0% | |
| AAATTGTTTGCGGTGTTTGT+GGG | + | chr3_4:77865697-77865716 | None:intergenic | 35.0% | |
| ! | TATTGATAGGAAAGCACACA+AGG | - | chr3_4:77865892-77865911 | Msa0524400:CDS | 35.0% |
| GTATGTTGAACCTAACAAAG+TGG | - | chr3_4:77865928-77865947 | Msa0524400:CDS | 35.0% | |
| !! | TTGTTTCTAACATAACCGGA+AGG | + | chr3_4:77866061-77866080 | None:intergenic | 35.0% |
| TACGACAACAATCAGTATTC+TGG | - | chr3_4:77866082-77866101 | Msa0524400:CDS | 35.0% | |
| ATGATATCACATGACAGAAC+AGG | + | chr3_4:77866179-77866198 | None:intergenic | 35.0% | |
| TGATTCGTAGTAGTAGTAGT+AGG | - | chr3_4:77866314-77866333 | Msa0524400:CDS | 35.0% | |
| CAATGATAAGGCGATTGTAA+TGG | + | chr3_4:77866417-77866436 | None:intergenic | 35.0% | |
| AAGAGATAATATGGGTGCTC+TGG | - | chr3_4:77865632-77865651 | Msa0524400:three_prime_UTR | 40.0% | |
| GAAATTGTTTGCGGTGTTTG+TGG | + | chr3_4:77865698-77865717 | None:intergenic | 40.0% | |
| CAAACACCGCAAACAATTTC+AGG | - | chr3_4:77865698-77865717 | Msa0524400:three_prime_UTR | 40.0% | |
| TGTTGAACCTAACAAAGTGG+TGG | - | chr3_4:77865931-77865950 | Msa0524400:CDS | 40.0% | |
| ATATCACATGACAGAACAGG+CGG | + | chr3_4:77866176-77866195 | None:intergenic | 40.0% | |
| AAGAGATAATATGGGTGCTC+TGG | - | chr3_4:77865632-77865651 | Msa0524400:three_prime_UTR | 40.0% | |
| GAAATTGTTTGCGGTGTTTG+TGG | + | chr3_4:77865698-77865717 | None:intergenic | 40.0% | |
| CAAACACCGCAAACAATTTC+AGG | - | chr3_4:77865698-77865717 | Msa0524400:three_prime_UTR | 40.0% | |
| TGTTGAACCTAACAAAGTGG+TGG | - | chr3_4:77865931-77865950 | Msa0524400:CDS | 40.0% | |
| ATATCACATGACAGAACAGG+CGG | + | chr3_4:77866176-77866195 | None:intergenic | 40.0% | |
| TCTGAGCTATTTGACTGCTC+CGG | - | chr3_4:77865663-77865682 | Msa0524400:three_prime_UTR | 45.0% | |
| GGTGGAAGTGAAAGTGAAGA+TGG | - | chr3_4:77865802-77865821 | Msa0524400:three_prime_UTR | 45.0% | |
| !! | AAAGTGAAGATGGACTGCGA+AGG | - | chr3_4:77865812-77865831 | Msa0524400:three_prime_UTR | 45.0% |
| GATGCGAGAGAAAAGTGAGA+AGG | - | chr3_4:77865834-77865853 | Msa0524400:exon | 45.0% | |
| CGAGAGAAAAGTGAGAAGGT+CGG | - | chr3_4:77865838-77865857 | Msa0524400:CDS | 45.0% | |
| ACGACGTCGTATGGAACATA+TGG | + | chr3_4:77865998-77866017 | None:intergenic | 45.0% | |
| CGTACGTACCTTGTGCATAT+GGG | + | chr3_4:77866027-77866046 | None:intergenic | 45.0% | |
| TCGTACGTACCTTGTGCATA+TGG | + | chr3_4:77866028-77866047 | None:intergenic | 45.0% | |
| !! | TACGACAAGAAAGCACCTTC+CGG | - | chr3_4:77866043-77866062 | Msa0524400:CDS | 45.0% |
| TCAGTATTCTGGATCCCATC+TGG | - | chr3_4:77866093-77866112 | Msa0524400:CDS | 45.0% | |
| TCTGAGCTATTTGACTGCTC+CGG | - | chr3_4:77865663-77865682 | Msa0524400:three_prime_UTR | 45.0% | |
| GGTGGAAGTGAAAGTGAAGA+TGG | - | chr3_4:77865802-77865821 | Msa0524400:three_prime_UTR | 45.0% | |
| !! | AAAGTGAAGATGGACTGCGA+AGG | - | chr3_4:77865812-77865831 | Msa0524400:three_prime_UTR | 45.0% |
| GATGCGAGAGAAAAGTGAGA+AGG | - | chr3_4:77865834-77865853 | Msa0524400:exon | 45.0% | |
| CGAGAGAAAAGTGAGAAGGT+CGG | - | chr3_4:77865838-77865857 | Msa0524400:CDS | 45.0% | |
| ACGACGTCGTATGGAACATA+TGG | + | chr3_4:77865998-77866017 | None:intergenic | 45.0% | |
| CGTACGTACCTTGTGCATAT+GGG | + | chr3_4:77866027-77866046 | None:intergenic | 45.0% | |
| TCGTACGTACCTTGTGCATA+TGG | + | chr3_4:77866028-77866047 | None:intergenic | 45.0% | |
| !! | TACGACAAGAAAGCACCTTC+CGG | - | chr3_4:77866043-77866062 | Msa0524400:CDS | 45.0% |
| TCAGTATTCTGGATCCCATC+TGG | - | chr3_4:77866093-77866112 | Msa0524400:CDS | 45.0% | |
| GTGTTTGTGGGAACTTCCAC+CGG | + | chr3_4:77865685-77865704 | None:intergenic | 50.0% | |
| GAGAAAAGTGAGAAGGTCGG+TGG | - | chr3_4:77865841-77865860 | Msa0524400:CDS | 50.0% | |
| AAAGTGAGAAGGTCGGTGGA+AGG | - | chr3_4:77865845-77865864 | Msa0524400:CDS | 50.0% | |
| AGGTCGGTGGAAGGAATGAA+AGG | - | chr3_4:77865854-77865873 | Msa0524400:CDS | 50.0% | |
| AGCACACAAGGTCACTGTTC+AGG | - | chr3_4:77865904-77865923 | Msa0524400:CDS | 50.0% | |
| GCACACAAGGTCACTGTTCA+GGG | - | chr3_4:77865905-77865924 | Msa0524400:CDS | 50.0% | |
| CACACAAGGTCACTGTTCAG+GGG | - | chr3_4:77865906-77865925 | Msa0524400:CDS | 50.0% | |
| ATACGCGCCACCACTTTGTT+AGG | + | chr3_4:77865941-77865960 | None:intergenic | 50.0% | |
| CTGGTAAGAGGGCTGAGATA+TGG | - | chr3_4:77865972-77865991 | Msa0524400:CDS | 50.0% | |
| GTTGCACACCCATATGCACA+AGG | - | chr3_4:77866016-77866035 | Msa0524400:CDS | 50.0% | |
| ! | ATTTTCGTCGCTGAAAGCGG+TGG | + | chr3_4:77866149-77866168 | None:intergenic | 50.0% |
| ! | GGGATTTTCGTCGCTGAAAG+CGG | + | chr3_4:77866152-77866171 | None:intergenic | 50.0% |
| GTGTTTGTGGGAACTTCCAC+CGG | + | chr3_4:77865685-77865704 | None:intergenic | 50.0% | |
| GAGAAAAGTGAGAAGGTCGG+TGG | - | chr3_4:77865841-77865860 | Msa0524400:CDS | 50.0% | |
| AAAGTGAGAAGGTCGGTGGA+AGG | - | chr3_4:77865845-77865864 | Msa0524400:CDS | 50.0% | |
| AGGTCGGTGGAAGGAATGAA+AGG | - | chr3_4:77865854-77865873 | Msa0524400:CDS | 50.0% | |
| AGCACACAAGGTCACTGTTC+AGG | - | chr3_4:77865904-77865923 | Msa0524400:CDS | 50.0% | |
| GCACACAAGGTCACTGTTCA+GGG | - | chr3_4:77865905-77865924 | Msa0524400:CDS | 50.0% | |
| CACACAAGGTCACTGTTCAG+GGG | - | chr3_4:77865906-77865925 | Msa0524400:CDS | 50.0% | |
| ATACGCGCCACCACTTTGTT+AGG | + | chr3_4:77865941-77865960 | None:intergenic | 50.0% | |
| CTGGTAAGAGGGCTGAGATA+TGG | - | chr3_4:77865972-77865991 | Msa0524400:CDS | 50.0% | |
| GTTGCACACCCATATGCACA+AGG | - | chr3_4:77866016-77866035 | Msa0524400:CDS | 50.0% | |
| ! | ATTTTCGTCGCTGAAAGCGG+TGG | + | chr3_4:77866149-77866168 | None:intergenic | 50.0% |
| ! | GGGATTTTCGTCGCTGAAAG+CGG | + | chr3_4:77866152-77866171 | None:intergenic | 50.0% |
| GAGCTATTTGACTGCTCCGG+TGG | - | chr3_4:77865666-77865685 | Msa0524400:three_prime_UTR | 55.0% | |
| TCTCAGCCCTCTTACCAGTG+CGG | + | chr3_4:77865970-77865989 | None:intergenic | 55.0% | |
| AGCGGTGGTGTAGCGAACTT+CGG | + | chr3_4:77866134-77866153 | None:intergenic | 55.0% | |
| CACATGACAGAACAGGCGGT+GGG | + | chr3_4:77866172-77866191 | None:intergenic | 55.0% | |
| TCACATGACAGAACAGGCGG+TGG | + | chr3_4:77866173-77866192 | None:intergenic | 55.0% | |
| GAGCTATTTGACTGCTCCGG+TGG | - | chr3_4:77865666-77865685 | Msa0524400:three_prime_UTR | 55.0% | |
| TCTCAGCCCTCTTACCAGTG+CGG | + | chr3_4:77865970-77865989 | None:intergenic | 55.0% | |
| AGCGGTGGTGTAGCGAACTT+CGG | + | chr3_4:77866134-77866153 | None:intergenic | 55.0% | |
| CACATGACAGAACAGGCGGT+GGG | + | chr3_4:77866172-77866191 | None:intergenic | 55.0% | |
| TCACATGACAGAACAGGCGG+TGG | + | chr3_4:77866173-77866192 | None:intergenic | 55.0% | |
| ! | TCGCTCACCGCACTGGTAAG+AGG | - | chr3_4:77865960-77865979 | Msa0524400:CDS | 60.0% |
| ! | CGCTCACCGCACTGGTAAGA+GGG | - | chr3_4:77865961-77865980 | Msa0524400:CDS | 60.0% |
| GGGTGTGCAACGACGTCGTA+TGG | + | chr3_4:77866007-77866026 | None:intergenic | 60.0% | |
| GGAACTAGCACGCGCCAGAT+GGG | + | chr3_4:77866110-77866129 | None:intergenic | 60.0% | |
| TGGAACTAGCACGCGCCAGA+TGG | + | chr3_4:77866111-77866130 | None:intergenic | 60.0% | |
| GGTGGTGTAGCGAACTTCGG+TGG | + | chr3_4:77866131-77866150 | None:intergenic | 60.0% | |
| ! | TCGCTCACCGCACTGGTAAG+AGG | - | chr3_4:77865960-77865979 | Msa0524400:CDS | 60.0% |
| ! | CGCTCACCGCACTGGTAAGA+GGG | - | chr3_4:77865961-77865980 | Msa0524400:CDS | 60.0% |
| GGGTGTGCAACGACGTCGTA+TGG | + | chr3_4:77866007-77866026 | None:intergenic | 60.0% | |
| GGAACTAGCACGCGCCAGAT+GGG | + | chr3_4:77866110-77866129 | None:intergenic | 60.0% | |
| TGGAACTAGCACGCGCCAGA+TGG | + | chr3_4:77866111-77866130 | None:intergenic | 60.0% | |
| GGTGGTGTAGCGAACTTCGG+TGG | + | chr3_4:77866131-77866150 | None:intergenic | 60.0% | |
| GCGCGTATCGCTCACCGCAC+TGG | - | chr3_4:77865953-77865972 | Msa0524400:CDS | 70.0% | |
| GCGCGTATCGCTCACCGCAC+TGG | - | chr3_4:77865953-77865972 | Msa0524400:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 77865558 | 77866472 | 77865558 | ID=Msa0524400;Name=Msa0524400 |
| chr3_4 | mRNA | 77865558 | 77866472 | 77865558 | ID=Msa0524400-mRNA-1;Parent=Msa0524400;Name=Msa0524400-mRNA-1;_AED=0.01;_eAED=0.01;_QI=84|1|1|1|1|1|2|280|156 |
| chr3_4 | exon | 77865558 | 77866230 | 77865558 | ID=Msa0524400-mRNA-1:exon:22893;Parent=Msa0524400-mRNA-1 |
| chr3_4 | exon | 77866311 | 77866472 | 77866311 | ID=Msa0524400-mRNA-1:exon:22892;Parent=Msa0524400-mRNA-1 |
| chr3_4 | five_prime_UTR | 77866389 | 77866472 | 77866389 | ID=Msa0524400-mRNA-1:five_prime_utr;Parent=Msa0524400-mRNA-1 |
| chr3_4 | CDS | 77866311 | 77866388 | 77866311 | ID=Msa0524400-mRNA-1:cds;Parent=Msa0524400-mRNA-1 |
| chr3_4 | CDS | 77865838 | 77866230 | 77865838 | ID=Msa0524400-mRNA-1:cds;Parent=Msa0524400-mRNA-1 |
| chr3_4 | three_prime_UTR | 77865558 | 77865837 | 77865558 | ID=Msa0524400-mRNA-1:three_prime_utr;Parent=Msa0524400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
