Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364940 | XP_003604043.1 | 98.718 | 156 | 2 | 0 | 1 | 156 | 1 | 156 | 2.69e-112 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364940 | sp|Q9SZN7|HIP26_ARATH | 76.282 | 156 | 34 | 1 | 1 | 156 | 1 | 153 | 1.09e-83 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364940 | G7J8I5 | 98.718 | 156 | 2 | 0 | 1 | 156 | 1 | 156 | 1.29e-112 | 325 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1364940 | Msa1367490 | 0.992412 | 3.918638e-193 | -8.615850e-47 |
| Msa1364940 | Msa1417570 | 0.978823 | 1.221713e-146 | -8.615850e-47 |
| Msa1364940 | Msa1422810 | 0.819755 | 9.829885e-53 | -8.615850e-47 |
| Msa1364940 | Msa1424620 | 0.995486 | 9.446335e-217 | -8.615850e-47 |
| Msa1364940 | Msa1435520 | 0.950429 | 1.677706e-108 | -8.615850e-47 |
| Msa1364940 | Msa1454950 | 0.831591 | 1.530221e-55 | -8.615850e-47 |
| Msa0643320 | Msa1364940 | 0.822497 | 2.294978e-53 | -8.615850e-47 |
| Msa0683140 | Msa1364940 | 0.836180 | 1.088394e-56 | -8.615850e-47 |
| Msa0683600 | Msa1364940 | 0.832345 | 9.968576e-56 | -8.615850e-47 |
| Msa0719420 | Msa1364940 | 0.802101 | 6.582004e-49 | -8.615850e-47 |
| Msa0789680 | Msa1364940 | 0.802883 | 4.540966e-49 | -8.615850e-47 |
| Msa0186310 | Msa1364940 | 0.819946 | 8.893649e-53 | -8.615850e-47 |
| Msa0189300 | Msa1364940 | 0.800666 | 1.295197e-48 | -8.615850e-47 |
| Msa0231660 | Msa1364940 | 0.812301 | 4.542357e-51 | -8.615850e-47 |
| Msa0386040 | Msa1364940 | 0.834402 | 3.061024e-56 | -8.615850e-47 |
| Msa0387910 | Msa1364940 | 0.810612 | 1.057259e-50 | -8.615850e-47 |
| Msa0436920 | Msa1364940 | -0.805812 | 1.114218e-49 | -8.615850e-47 |
| Msa0467220 | Msa1364940 | 0.812425 | 4.266688e-51 | -8.615850e-47 |
| Msa1088290 | Msa1364940 | 0.812219 | 4.733575e-51 | -8.615850e-47 |
| Msa0251230 | Msa1364940 | 0.808067 | 3.716226e-50 | -8.615850e-47 |
| Msa0335820 | Msa1364940 | -0.800065 | 1.716456e-48 | -8.615850e-47 |
| Msa1133230 | Msa1364940 | 0.820259 | 7.538413e-53 | -8.615850e-47 |
| Msa1133250 | Msa1364940 | 0.821923 | 3.118959e-53 | -8.615850e-47 |
| Msa0524290 | Msa1364940 | 0.987429 | 3.154341e-170 | -8.615850e-47 |
| Msa0524400 | Msa1364940 | 0.991667 | 6.973575e-189 | -8.615850e-47 |
| Msa0545080 | Msa1364940 | 0.800352 | 1.500258e-48 | -8.615850e-47 |
| Msa0602370 | Msa1364940 | 0.834025 | 3.804334e-56 | -8.615850e-47 |
| Msa0951400 | Msa1364940 | 0.803172 | 3.957258e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364940 | MtrunA17_Chr3g0145621 | 98.718 | 156 | 2 | 0 | 1 | 156 | 1 | 156 | 2.48e-116 | 325 |
| Msa1364940 | MtrunA17_Chr4g0036931 | 79.245 | 159 | 27 | 3 | 1 | 156 | 1 | 156 | 1.70e-88 | 254 |
| Msa1364940 | MtrunA17_Chr5g0405811 | 61.491 | 161 | 53 | 3 | 1 | 156 | 1 | 157 | 7.73e-66 | 197 |
| Msa1364940 | MtrunA17_Chr1g0160201 | 53.205 | 156 | 64 | 3 | 1 | 156 | 1 | 147 | 1.24e-53 | 166 |
| Msa1364940 | MtrunA17_Chr8g0382721 | 51.613 | 155 | 69 | 3 | 2 | 156 | 5 | 153 | 4.19e-49 | 155 |
| Msa1364940 | MtrunA17_Chr3g0124411 | 51.923 | 156 | 66 | 4 | 2 | 156 | 5 | 152 | 4.89e-49 | 155 |
| Msa1364940 | MtrunA17_Chr5g0407821 | 47.436 | 156 | 71 | 3 | 1 | 156 | 1 | 145 | 1.22e-45 | 146 |
| Msa1364940 | MtrunA17_Chr6g0448861 | 45.062 | 162 | 76 | 3 | 1 | 156 | 1 | 155 | 5.20e-45 | 145 |
| Msa1364940 | MtrunA17_Chr7g0251491 | 48.077 | 156 | 71 | 3 | 1 | 156 | 25 | 170 | 6.43e-45 | 145 |
| Msa1364940 | MtrunA17_Chr3g0115421 | 47.742 | 155 | 71 | 3 | 2 | 156 | 5 | 149 | 2.20e-42 | 138 |
| Msa1364940 | MtrunA17_Chr5g0422891 | 37.821 | 156 | 88 | 3 | 1 | 156 | 1 | 147 | 9.31e-35 | 118 |
| Msa1364940 | MtrunA17_Chr2g0325601 | 36.429 | 140 | 77 | 3 | 28 | 156 | 4 | 142 | 3.24e-22 | 86.3 |
| Msa1364940 | MtrunA17_Chr1g0189221 | 42.157 | 102 | 54 | 2 | 25 | 122 | 52 | 152 | 1.45e-20 | 83.2 |
| Msa1364940 | MtrunA17_Chr6g0471231 | 36.364 | 143 | 70 | 6 | 28 | 156 | 5 | 140 | 3.83e-18 | 75.9 |
| Msa1364940 | MtrunA17_Chr7g0218981 | 48.485 | 66 | 33 | 1 | 26 | 91 | 4 | 68 | 2.98e-14 | 65.5 |
| Msa1364940 | MtrunA17_Chr3g0094841 | 34.586 | 133 | 74 | 3 | 26 | 156 | 116 | 237 | 3.22e-14 | 67.4 |
| Msa1364940 | MtrunA17_Chr1g0192131 | 36.765 | 68 | 43 | 0 | 25 | 92 | 14 | 81 | 1.95e-12 | 63.5 |
| Msa1364940 | MtrunA17_Chr1g0198341 | 45.455 | 66 | 35 | 1 | 26 | 91 | 4 | 68 | 3.47e-12 | 58.9 |
| Msa1364940 | MtrunA17_Chr7g0269081 | 36.765 | 68 | 42 | 1 | 24 | 91 | 20 | 86 | 5.05e-12 | 62.4 |
| Msa1364940 | MtrunA17_Chr7g0272571 | 42.857 | 63 | 35 | 1 | 30 | 92 | 37 | 98 | 7.76e-12 | 62.0 |
| Msa1364940 | MtrunA17_Chr6g0460361 | 37.273 | 110 | 61 | 6 | 52 | 156 | 4 | 110 | 1.39e-11 | 58.2 |
| Msa1364940 | MtrunA17_Chr3g0080011 | 55.769 | 52 | 21 | 2 | 1 | 52 | 25 | 74 | 2.51e-11 | 57.0 |
| Msa1364940 | MtrunA17_Chr1g0208301 | 39.706 | 68 | 40 | 1 | 24 | 91 | 11 | 77 | 2.83e-11 | 60.5 |
| Msa1364940 | MtrunA17_Chr3g0111541 | 41.538 | 65 | 37 | 1 | 26 | 90 | 12 | 75 | 3.76e-11 | 58.9 |
| Msa1364940 | MtrunA17_Chr7g0263491 | 46.269 | 67 | 34 | 1 | 26 | 92 | 209 | 273 | 6.49e-11 | 58.9 |
| Msa1364940 | MtrunA17_Chr8g0386231 | 44.776 | 67 | 36 | 1 | 30 | 95 | 55 | 121 | 9.34e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364940 | AT4G38580.1 | 76.282 | 156 | 34 | 1 | 1 | 156 | 1 | 153 | 1.11e-84 | 245 |
| Msa1364940 | AT4G38580.2 | 76.282 | 156 | 34 | 1 | 1 | 156 | 1 | 153 | 1.11e-84 | 245 |
| Msa1364940 | AT4G35060.1 | 70.701 | 157 | 41 | 3 | 1 | 156 | 1 | 153 | 1.89e-76 | 224 |
| Msa1364940 | AT5G66110.3 | 66.667 | 138 | 44 | 1 | 19 | 156 | 12 | 147 | 2.19e-66 | 199 |
| Msa1364940 | AT5G66110.1 | 66.667 | 138 | 44 | 1 | 19 | 156 | 12 | 147 | 2.19e-66 | 199 |
| Msa1364940 | AT5G66110.2 | 65.854 | 123 | 40 | 1 | 34 | 156 | 1 | 121 | 1.48e-58 | 178 |
| Msa1364940 | AT1G71050.1 | 56.329 | 158 | 61 | 4 | 1 | 156 | 1 | 152 | 9.65e-54 | 167 |
| Msa1364940 | AT1G22990.1 | 49.057 | 159 | 71 | 2 | 1 | 156 | 1 | 152 | 2.00e-50 | 159 |
| Msa1364940 | AT1G22990.2 | 46.795 | 156 | 74 | 2 | 1 | 156 | 1 | 147 | 2.35e-47 | 150 |
| Msa1364940 | AT4G39700.1 | 48.734 | 158 | 74 | 4 | 2 | 156 | 5 | 158 | 1.24e-44 | 144 |
| Msa1364940 | AT5G17450.1 | 45.860 | 157 | 76 | 3 | 1 | 156 | 1 | 149 | 1.48e-42 | 139 |
| Msa1364940 | AT4G08570.1 | 44.231 | 156 | 76 | 4 | 2 | 156 | 5 | 150 | 3.29e-40 | 132 |
| Msa1364940 | AT5G17450.2 | 43.396 | 106 | 51 | 3 | 52 | 156 | 8 | 105 | 1.51e-25 | 94.4 |
| Msa1364940 | AT1G06330.1 | 38.000 | 150 | 71 | 6 | 27 | 156 | 3 | 150 | 4.89e-24 | 91.7 |
| Msa1364940 | AT2G18196.1 | 33.824 | 136 | 84 | 4 | 25 | 156 | 45 | 178 | 4.05e-20 | 82.4 |
| Msa1364940 | AT4G10465.1 | 33.566 | 143 | 89 | 3 | 18 | 156 | 43 | 183 | 1.81e-19 | 80.9 |
| Msa1364940 | AT3G56891.1 | 32.544 | 169 | 89 | 6 | 10 | 156 | 1 | 166 | 1.57e-18 | 77.8 |
| Msa1364940 | AT2G18196.2 | 33.071 | 127 | 79 | 4 | 34 | 156 | 1 | 125 | 2.37e-16 | 71.2 |
| Msa1364940 | AT3G56891.2 | 33.103 | 145 | 73 | 5 | 34 | 156 | 1 | 143 | 3.70e-16 | 71.2 |
| Msa1364940 | AT1G29100.2 | 33.974 | 156 | 65 | 4 | 27 | 156 | 4 | 147 | 1.26e-15 | 69.7 |
| Msa1364940 | AT1G29100.1 | 33.333 | 153 | 64 | 4 | 30 | 156 | 1 | 141 | 3.31e-14 | 65.9 |
| Msa1364940 | AT1G56210.1 | 39.744 | 78 | 46 | 1 | 25 | 102 | 39 | 115 | 9.07e-13 | 65.1 |
| Msa1364940 | AT1G66240.1 | 43.939 | 66 | 36 | 1 | 26 | 91 | 33 | 97 | 1.20e-12 | 60.8 |
| Msa1364940 | AT3G56240.3 | 47.761 | 67 | 34 | 1 | 26 | 92 | 3 | 68 | 2.19e-12 | 60.8 |
| Msa1364940 | AT3G56240.1 | 47.761 | 67 | 34 | 1 | 26 | 92 | 3 | 68 | 2.19e-12 | 60.8 |
| Msa1364940 | AT3G02960.1 | 28.571 | 133 | 85 | 2 | 24 | 156 | 124 | 246 | 4.53e-12 | 62.4 |
| Msa1364940 | AT5G27690.1 | 39.130 | 69 | 41 | 1 | 24 | 92 | 28 | 95 | 1.74e-11 | 61.2 |
| Msa1364940 | AT3G06130.2 | 39.706 | 68 | 40 | 1 | 24 | 91 | 8 | 74 | 4.40e-11 | 60.1 |
Find 61 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTAAAGAAAGAGATAATA+TGG | 0.220139 | tig0018197:+14746 | Msa1364940:exon |
| AAATCAAGTATTATGCCTTT+TGG | 0.248220 | tig0018197:+15400 | Msa1364940:three_prime_UTR |
| CAAACACCGCAAACAATTTC+AGG | 0.262177 | tig0018197:+14821 | Msa1364940:CDS |
| TGAAATTGTGAACCAATAAA+AGG | 0.317677 | tig0018197:-15471 | None:intergenic |
| AGCACACAAGGTCACTGTTC+AGG | 0.319616 | tig0018197:+15032 | Msa1364940:CDS |
| AATAATTTGCTCTTCTTCTT+CGG | 0.323900 | tig0018197:-15570 | None:intergenic |
| TCGTACGTACCTTGTGCATA+TGG | 0.340646 | tig0018197:-15153 | None:intergenic |
| TACGACAACAATCAGTATTC+TGG | 0.342642 | tig0018197:+15210 | Msa1364940:CDS |
| ATACGCGCCACCACTTTGTT+AGG | 0.355486 | tig0018197:-15066 | None:intergenic |
| TTTACTTACTACTAATTGCT+TGG | 0.381220 | tig0018197:-14730 | None:intergenic |
| TCTTCGGAAAATCAATGATA+AGG | 0.403344 | tig0018197:-15554 | None:intergenic |
| TCGCTCACCGCACTGGTAAG+AGG | 0.420324 | tig0018197:+15088 | Msa1364940:CDS |
| CTTTCCTATCAATATCAACT+TGG | 0.425944 | tig0018197:-15011 | None:intergenic |
| GTAGTTGTTTCTAACATAAC+CGG | 0.435319 | tig0018197:-15190 | None:intergenic |
| CAATTTCATATAATGATTTG+TGG | 0.435765 | tig0018197:+15486 | Msa1364940:three_prime_UTR |
| AAGAGATAATATGGGTGCTC+TGG | 0.436844 | tig0018197:+14755 | Msa1364940:exon |
| GGGTGTGCAACGACGTCGTA+TGG | 0.444075 | tig0018197:-15132 | None:intergenic |
| AATTTCATATAATGATTTGT+GGG | 0.444929 | tig0018197:+15487 | Msa1364940:three_prime_UTR |
| ATTATTATTGTTATTAGTTG+TGG | 0.451022 | tig0018197:+15328 | Msa1364940:three_prime_UTR |
| TGATTCGTAGTAGTAGTAGT+AGG | 0.452275 | tig0018197:+15442 | Msa1364940:three_prime_UTR |
| CATATAGAACAAAATGAAGT+TGG | 0.453237 | tig0018197:-15357 | None:intergenic |
| CTATTACCTGAAATTGTTTG+CGG | 0.461292 | tig0018197:-14827 | None:intergenic |
| GAAATTGTTTGCGGTGTTTG+TGG | 0.465422 | tig0018197:-14818 | None:intergenic |
| CAATGATAAGGCGATTGTAA+TGG | 0.466760 | tig0018197:-15542 | None:intergenic |
| ACGACGTCGTATGGAACATA+TGG | 0.471597 | tig0018197:-15123 | None:intergenic |
| TCAGTATTCTGGATCCCATC+TGG | 0.473879 | tig0018197:+15221 | Msa1364940:CDS |
| TGAACCAAGTTGATATTGAT+AGG | 0.475748 | tig0018197:+15007 | Msa1364940:CDS |
| AAATTGTTTGCGGTGTTTGT+GGG | 0.476948 | tig0018197:-14817 | None:intergenic |
| GCACACAAGGTCACTGTTCA+GGG | 0.478112 | tig0018197:+15033 | Msa1364940:CDS |
| TACGACAAGAAAGCACCTTC+CGG | 0.490150 | tig0018197:+15171 | Msa1364940:CDS |
| ATGATATCACATGACAGAAC+AGG | 0.494670 | tig0018197:-15304 | None:intergenic |
| CTGGTAAGAGGGCTGAGATA+TGG | 0.502117 | tig0018197:+15100 | Msa1364940:CDS |
| AACATAGATAAATTTCCAAA+AGG | 0.506301 | tig0018197:-15415 | None:intergenic |
| CGTACGTACCTTGTGCATAT+GGG | 0.507821 | tig0018197:-15152 | None:intergenic |
| GTGTTTGTGGGAACTTCCAC+CGG | 0.512215 | tig0018197:-14805 | None:intergenic |
| AGTAAAGAAAGAGATAATAT+GGG | 0.512889 | tig0018197:+14747 | Msa1364940:exon |
| TGGAACTAGCACGCGCCAGA+TGG | 0.513296 | tig0018197:-15236 | None:intergenic |
| GCGCGTATCGCTCACCGCAC+TGG | 0.514553 | tig0018197:+15081 | Msa1364940:CDS |
| CGCTCACCGCACTGGTAAGA+GGG | 0.517783 | tig0018197:+15089 | Msa1364940:CDS |
| TCTGAGCTATTTGACTGCTC+CGG | 0.534149 | tig0018197:+14786 | Msa1364940:CDS |
| AAAGTGAGAAGGTCGGTGGA+AGG | 0.544215 | tig0018197:+14973 | Msa1364940:CDS |
| GGTGGAAGTGAAAGTGAAGA+TGG | 0.547212 | tig0018197:+14930 | Msa1364940:CDS |
| GAGCTATTTGACTGCTCCGG+TGG | 0.554467 | tig0018197:+14789 | Msa1364940:CDS |
| GGAACTAGCACGCGCCAGAT+GGG | 0.557432 | tig0018197:-15235 | None:intergenic |
| AGGTCGGTGGAAGGAATGAA+AGG | 0.586836 | tig0018197:+14982 | Msa1364940:CDS |
| GAGAAAAGTGAGAAGGTCGG+TGG | 0.602080 | tig0018197:+14969 | Msa1364940:CDS |
| AGCGGTGGTGTAGCGAACTT+CGG | 0.605621 | tig0018197:-15259 | None:intergenic |
| TCACATGACAGAACAGGCGG+TGG | 0.625825 | tig0018197:-15298 | None:intergenic |
| CGAGAGAAAAGTGAGAAGGT+CGG | 0.626298 | tig0018197:+14966 | Msa1364940:CDS |
| TATTGATAGGAAAGCACACA+AGG | 0.639331 | tig0018197:+15020 | Msa1364940:CDS |
| GATGCGAGAGAAAAGTGAGA+AGG | 0.650873 | tig0018197:+14962 | Msa1364940:CDS |
| CACATGACAGAACAGGCGGT+GGG | 0.664346 | tig0018197:-15297 | None:intergenic |
| TTGTTTCTAACATAACCGGA+AGG | 0.675813 | tig0018197:-15186 | None:intergenic |
| TGTTGAACCTAACAAAGTGG+TGG | 0.684270 | tig0018197:+15059 | Msa1364940:CDS |
| CACACAAGGTCACTGTTCAG+GGG | 0.691299 | tig0018197:+15034 | Msa1364940:CDS |
| GGTGGTGTAGCGAACTTCGG+TGG | 0.699721 | tig0018197:-15256 | None:intergenic |
| ATATCACATGACAGAACAGG+CGG | 0.726418 | tig0018197:-15301 | None:intergenic |
| GTTGCACACCCATATGCACA+AGG | 0.727359 | tig0018197:+15144 | Msa1364940:CDS |
| GTATGTTGAACCTAACAAAG+TGG | 0.728726 | tig0018197:+15056 | Msa1364940:CDS |
| TCTCAGCCCTCTTACCAGTG+CGG | 0.734386 | tig0018197:-15095 | None:intergenic |
| AAAGTGAAGATGGACTGCGA+AGG | 0.769260 | tig0018197:+14940 | Msa1364940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAACATATGAATATGAA+TGG | - | tig0018197:14860-14879 | None:intergenic | 15.0% |
| !! | TATATATATATATGTACAGA+CGG | + | tig0018197:14909-14928 | Msa1364940:intron | 15.0% |
| !!! | ATTATTATTGTTATTAGTTG+TGG | + | tig0018197:15328-15347 | Msa1364940:three_prime_UTR | 15.0% |
| !!! | AATTTCATATAATGATTTGT+GGG | + | tig0018197:15487-15506 | Msa1364940:three_prime_UTR | 15.0% |
| !! | TAATAACATATGAATATGAA+TGG | - | tig0018197:14860-14879 | None:intergenic | 15.0% |
| !! | TATATATATATATGTACAGA+CGG | + | tig0018197:14909-14928 | Msa1364940:intron | 15.0% |
| !!! | ATTATTATTGTTATTAGTTG+TGG | + | tig0018197:15328-15347 | Msa1364940:three_prime_UTR | 15.0% |
| !!! | AATTTCATATAATGATTTGT+GGG | + | tig0018197:15487-15506 | Msa1364940:three_prime_UTR | 15.0% |
| !! | AAGTAAAGAAAGAGATAATA+TGG | + | tig0018197:14746-14765 | Msa1364940:exon | 20.0% |
| !! | AGTAAAGAAAGAGATAATAT+GGG | + | tig0018197:14747-14766 | Msa1364940:exon | 20.0% |
| !! | AACATAGATAAATTTCCAAA+AGG | - | tig0018197:15418-15437 | None:intergenic | 20.0% |
| !! | CAATTTCATATAATGATTTG+TGG | + | tig0018197:15486-15505 | Msa1364940:three_prime_UTR | 20.0% |
| !! | AAGTAAAGAAAGAGATAATA+TGG | + | tig0018197:14746-14765 | Msa1364940:exon | 20.0% |
| !! | AGTAAAGAAAGAGATAATAT+GGG | + | tig0018197:14747-14766 | Msa1364940:exon | 20.0% |
| !! | AACATAGATAAATTTCCAAA+AGG | - | tig0018197:15418-15437 | None:intergenic | 20.0% |
| !! | CAATTTCATATAATGATTTG+TGG | + | tig0018197:15486-15505 | Msa1364940:three_prime_UTR | 20.0% |
| ! | TTTACTTACTACTAATTGCT+TGG | - | tig0018197:14733-14752 | None:intergenic | 25.0% |
| ! | ACATATGAATATGAATGGAA+TGG | - | tig0018197:14855-14874 | None:intergenic | 25.0% |
| ! | CATATAGAACAAAATGAAGT+TGG | - | tig0018197:15360-15379 | None:intergenic | 25.0% |
| !! | CAACTTCATTTTGTTCTATA+TGG | + | tig0018197:15358-15377 | Msa1364940:three_prime_UTR | 25.0% |
| !! | AAATCAAGTATTATGCCTTT+TGG | + | tig0018197:15400-15419 | Msa1364940:three_prime_UTR | 25.0% |
| ! | TGAAATTGTGAACCAATAAA+AGG | - | tig0018197:15474-15493 | None:intergenic | 25.0% |
| !!! | AATAATTTGCTCTTCTTCTT+CGG | - | tig0018197:15573-15592 | None:intergenic | 25.0% |
| ! | TTTACTTACTACTAATTGCT+TGG | - | tig0018197:14733-14752 | None:intergenic | 25.0% |
| ! | ACATATGAATATGAATGGAA+TGG | - | tig0018197:14855-14874 | None:intergenic | 25.0% |
| ! | CATATAGAACAAAATGAAGT+TGG | - | tig0018197:15360-15379 | None:intergenic | 25.0% |
| !! | CAACTTCATTTTGTTCTATA+TGG | + | tig0018197:15358-15377 | Msa1364940:three_prime_UTR | 25.0% |
| !! | AAATCAAGTATTATGCCTTT+TGG | + | tig0018197:15400-15419 | Msa1364940:three_prime_UTR | 25.0% |
| ! | TGAAATTGTGAACCAATAAA+AGG | - | tig0018197:15474-15493 | None:intergenic | 25.0% |
| !!! | AATAATTTGCTCTTCTTCTT+CGG | - | tig0018197:15573-15592 | None:intergenic | 25.0% |
| CTATTACCTGAAATTGTTTG+CGG | - | tig0018197:14830-14849 | None:intergenic | 30.0% | |
| ATATATATATGTACAGACGG+TGG | + | tig0018197:14912-14931 | Msa1364940:intron | 30.0% | |
| !! | TGAACCAAGTTGATATTGAT+AGG | + | tig0018197:15007-15026 | Msa1364940:CDS | 30.0% |
| CTTTCCTATCAATATCAACT+TGG | - | tig0018197:15014-15033 | None:intergenic | 30.0% | |
| !! | GTAGTTGTTTCTAACATAAC+CGG | - | tig0018197:15193-15212 | None:intergenic | 30.0% |
| ! | CATTTTGTTCTATATGGAGA+TGG | + | tig0018197:15364-15383 | Msa1364940:three_prime_UTR | 30.0% |
| ! | AGTAGGTTACTACCTTTTAT+TGG | + | tig0018197:15459-15478 | Msa1364940:three_prime_UTR | 30.0% |
| TCTTCGGAAAATCAATGATA+AGG | - | tig0018197:15557-15576 | None:intergenic | 30.0% | |
| CTATTACCTGAAATTGTTTG+CGG | - | tig0018197:14830-14849 | None:intergenic | 30.0% | |
| ATATATATATGTACAGACGG+TGG | + | tig0018197:14912-14931 | Msa1364940:intron | 30.0% | |
| !! | TGAACCAAGTTGATATTGAT+AGG | + | tig0018197:15007-15026 | Msa1364940:CDS | 30.0% |
| CTTTCCTATCAATATCAACT+TGG | - | tig0018197:15014-15033 | None:intergenic | 30.0% | |
| !! | GTAGTTGTTTCTAACATAAC+CGG | - | tig0018197:15193-15212 | None:intergenic | 30.0% |
| ! | CATTTTGTTCTATATGGAGA+TGG | + | tig0018197:15364-15383 | Msa1364940:three_prime_UTR | 30.0% |
| ! | AGTAGGTTACTACCTTTTAT+TGG | + | tig0018197:15459-15478 | Msa1364940:three_prime_UTR | 30.0% |
| TCTTCGGAAAATCAATGATA+AGG | - | tig0018197:15557-15576 | None:intergenic | 30.0% | |
| AAATTGTTTGCGGTGTTTGT+GGG | - | tig0018197:14820-14839 | None:intergenic | 35.0% | |
| ! | TATTGATAGGAAAGCACACA+AGG | + | tig0018197:15020-15039 | Msa1364940:CDS | 35.0% |
| GTATGTTGAACCTAACAAAG+TGG | + | tig0018197:15056-15075 | Msa1364940:CDS | 35.0% | |
| !! | TTGTTTCTAACATAACCGGA+AGG | - | tig0018197:15189-15208 | None:intergenic | 35.0% |
| TACGACAACAATCAGTATTC+TGG | + | tig0018197:15210-15229 | Msa1364940:CDS | 35.0% | |
| ATGATATCACATGACAGAAC+AGG | - | tig0018197:15307-15326 | None:intergenic | 35.0% | |
| TGATTCGTAGTAGTAGTAGT+AGG | + | tig0018197:15442-15461 | Msa1364940:three_prime_UTR | 35.0% | |
| CAATGATAAGGCGATTGTAA+TGG | - | tig0018197:15545-15564 | None:intergenic | 35.0% | |
| AAATTGTTTGCGGTGTTTGT+GGG | - | tig0018197:14820-14839 | None:intergenic | 35.0% | |
| ! | TATTGATAGGAAAGCACACA+AGG | + | tig0018197:15020-15039 | Msa1364940:CDS | 35.0% |
| GTATGTTGAACCTAACAAAG+TGG | + | tig0018197:15056-15075 | Msa1364940:CDS | 35.0% | |
| !! | TTGTTTCTAACATAACCGGA+AGG | - | tig0018197:15189-15208 | None:intergenic | 35.0% |
| TACGACAACAATCAGTATTC+TGG | + | tig0018197:15210-15229 | Msa1364940:CDS | 35.0% | |
| ATGATATCACATGACAGAAC+AGG | - | tig0018197:15307-15326 | None:intergenic | 35.0% | |
| TGATTCGTAGTAGTAGTAGT+AGG | + | tig0018197:15442-15461 | Msa1364940:three_prime_UTR | 35.0% | |
| CAATGATAAGGCGATTGTAA+TGG | - | tig0018197:15545-15564 | None:intergenic | 35.0% | |
| AAGAGATAATATGGGTGCTC+TGG | + | tig0018197:14755-14774 | Msa1364940:exon | 40.0% | |
| GAAATTGTTTGCGGTGTTTG+TGG | - | tig0018197:14821-14840 | None:intergenic | 40.0% | |
| CAAACACCGCAAACAATTTC+AGG | + | tig0018197:14821-14840 | Msa1364940:CDS | 40.0% | |
| TGTTGAACCTAACAAAGTGG+TGG | + | tig0018197:15059-15078 | Msa1364940:CDS | 40.0% | |
| ATATCACATGACAGAACAGG+CGG | - | tig0018197:15304-15323 | None:intergenic | 40.0% | |
| AAGAGATAATATGGGTGCTC+TGG | + | tig0018197:14755-14774 | Msa1364940:exon | 40.0% | |
| GAAATTGTTTGCGGTGTTTG+TGG | - | tig0018197:14821-14840 | None:intergenic | 40.0% | |
| CAAACACCGCAAACAATTTC+AGG | + | tig0018197:14821-14840 | Msa1364940:CDS | 40.0% | |
| TGTTGAACCTAACAAAGTGG+TGG | + | tig0018197:15059-15078 | Msa1364940:CDS | 40.0% | |
| ATATCACATGACAGAACAGG+CGG | - | tig0018197:15304-15323 | None:intergenic | 40.0% | |
| TCTGAGCTATTTGACTGCTC+CGG | + | tig0018197:14786-14805 | Msa1364940:CDS | 45.0% | |
| GGTGGAAGTGAAAGTGAAGA+TGG | + | tig0018197:14930-14949 | Msa1364940:CDS | 45.0% | |
| !! | AAAGTGAAGATGGACTGCGA+AGG | + | tig0018197:14940-14959 | Msa1364940:CDS | 45.0% |
| GATGCGAGAGAAAAGTGAGA+AGG | + | tig0018197:14962-14981 | Msa1364940:CDS | 45.0% | |
| CGAGAGAAAAGTGAGAAGGT+CGG | + | tig0018197:14966-14985 | Msa1364940:CDS | 45.0% | |
| ACGACGTCGTATGGAACATA+TGG | - | tig0018197:15126-15145 | None:intergenic | 45.0% | |
| CGTACGTACCTTGTGCATAT+GGG | - | tig0018197:15155-15174 | None:intergenic | 45.0% | |
| TCGTACGTACCTTGTGCATA+TGG | - | tig0018197:15156-15175 | None:intergenic | 45.0% | |
| !! | TACGACAAGAAAGCACCTTC+CGG | + | tig0018197:15171-15190 | Msa1364940:CDS | 45.0% |
| TCAGTATTCTGGATCCCATC+TGG | + | tig0018197:15221-15240 | Msa1364940:CDS | 45.0% | |
| TCTGAGCTATTTGACTGCTC+CGG | + | tig0018197:14786-14805 | Msa1364940:CDS | 45.0% | |
| GGTGGAAGTGAAAGTGAAGA+TGG | + | tig0018197:14930-14949 | Msa1364940:CDS | 45.0% | |
| !! | AAAGTGAAGATGGACTGCGA+AGG | + | tig0018197:14940-14959 | Msa1364940:CDS | 45.0% |
| GATGCGAGAGAAAAGTGAGA+AGG | + | tig0018197:14962-14981 | Msa1364940:CDS | 45.0% | |
| CGAGAGAAAAGTGAGAAGGT+CGG | + | tig0018197:14966-14985 | Msa1364940:CDS | 45.0% | |
| ACGACGTCGTATGGAACATA+TGG | - | tig0018197:15126-15145 | None:intergenic | 45.0% | |
| CGTACGTACCTTGTGCATAT+GGG | - | tig0018197:15155-15174 | None:intergenic | 45.0% | |
| TCGTACGTACCTTGTGCATA+TGG | - | tig0018197:15156-15175 | None:intergenic | 45.0% | |
| !! | TACGACAAGAAAGCACCTTC+CGG | + | tig0018197:15171-15190 | Msa1364940:CDS | 45.0% |
| TCAGTATTCTGGATCCCATC+TGG | + | tig0018197:15221-15240 | Msa1364940:CDS | 45.0% | |
| GTGTTTGTGGGAACTTCCAC+CGG | - | tig0018197:14808-14827 | None:intergenic | 50.0% | |
| GAGAAAAGTGAGAAGGTCGG+TGG | + | tig0018197:14969-14988 | Msa1364940:CDS | 50.0% | |
| AAAGTGAGAAGGTCGGTGGA+AGG | + | tig0018197:14973-14992 | Msa1364940:CDS | 50.0% | |
| AGGTCGGTGGAAGGAATGAA+AGG | + | tig0018197:14982-15001 | Msa1364940:CDS | 50.0% | |
| AGCACACAAGGTCACTGTTC+AGG | + | tig0018197:15032-15051 | Msa1364940:CDS | 50.0% | |
| GCACACAAGGTCACTGTTCA+GGG | + | tig0018197:15033-15052 | Msa1364940:CDS | 50.0% | |
| CACACAAGGTCACTGTTCAG+GGG | + | tig0018197:15034-15053 | Msa1364940:CDS | 50.0% | |
| ATACGCGCCACCACTTTGTT+AGG | - | tig0018197:15069-15088 | None:intergenic | 50.0% | |
| CTGGTAAGAGGGCTGAGATA+TGG | + | tig0018197:15100-15119 | Msa1364940:CDS | 50.0% | |
| GTTGCACACCCATATGCACA+AGG | + | tig0018197:15144-15163 | Msa1364940:CDS | 50.0% | |
| ! | ATTTTCGTCGCTGAAAGCGG+TGG | - | tig0018197:15277-15296 | None:intergenic | 50.0% |
| ! | GGGATTTTCGTCGCTGAAAG+CGG | - | tig0018197:15280-15299 | None:intergenic | 50.0% |
| GTGTTTGTGGGAACTTCCAC+CGG | - | tig0018197:14808-14827 | None:intergenic | 50.0% | |
| GAGAAAAGTGAGAAGGTCGG+TGG | + | tig0018197:14969-14988 | Msa1364940:CDS | 50.0% | |
| AAAGTGAGAAGGTCGGTGGA+AGG | + | tig0018197:14973-14992 | Msa1364940:CDS | 50.0% | |
| AGGTCGGTGGAAGGAATGAA+AGG | + | tig0018197:14982-15001 | Msa1364940:CDS | 50.0% | |
| AGCACACAAGGTCACTGTTC+AGG | + | tig0018197:15032-15051 | Msa1364940:CDS | 50.0% | |
| GCACACAAGGTCACTGTTCA+GGG | + | tig0018197:15033-15052 | Msa1364940:CDS | 50.0% | |
| CACACAAGGTCACTGTTCAG+GGG | + | tig0018197:15034-15053 | Msa1364940:CDS | 50.0% | |
| ATACGCGCCACCACTTTGTT+AGG | - | tig0018197:15069-15088 | None:intergenic | 50.0% | |
| CTGGTAAGAGGGCTGAGATA+TGG | + | tig0018197:15100-15119 | Msa1364940:CDS | 50.0% | |
| GTTGCACACCCATATGCACA+AGG | + | tig0018197:15144-15163 | Msa1364940:CDS | 50.0% | |
| ! | ATTTTCGTCGCTGAAAGCGG+TGG | - | tig0018197:15277-15296 | None:intergenic | 50.0% |
| ! | GGGATTTTCGTCGCTGAAAG+CGG | - | tig0018197:15280-15299 | None:intergenic | 50.0% |
| GAGCTATTTGACTGCTCCGG+TGG | + | tig0018197:14789-14808 | Msa1364940:CDS | 55.0% | |
| TCTCAGCCCTCTTACCAGTG+CGG | - | tig0018197:15098-15117 | None:intergenic | 55.0% | |
| AGCGGTGGTGTAGCGAACTT+CGG | - | tig0018197:15262-15281 | None:intergenic | 55.0% | |
| CACATGACAGAACAGGCGGT+GGG | - | tig0018197:15300-15319 | None:intergenic | 55.0% | |
| TCACATGACAGAACAGGCGG+TGG | - | tig0018197:15301-15320 | None:intergenic | 55.0% | |
| GAGCTATTTGACTGCTCCGG+TGG | + | tig0018197:14789-14808 | Msa1364940:CDS | 55.0% | |
| TCTCAGCCCTCTTACCAGTG+CGG | - | tig0018197:15098-15117 | None:intergenic | 55.0% | |
| AGCGGTGGTGTAGCGAACTT+CGG | - | tig0018197:15262-15281 | None:intergenic | 55.0% | |
| CACATGACAGAACAGGCGGT+GGG | - | tig0018197:15300-15319 | None:intergenic | 55.0% | |
| TCACATGACAGAACAGGCGG+TGG | - | tig0018197:15301-15320 | None:intergenic | 55.0% | |
| ! | TCGCTCACCGCACTGGTAAG+AGG | + | tig0018197:15088-15107 | Msa1364940:CDS | 60.0% |
| ! | CGCTCACCGCACTGGTAAGA+GGG | + | tig0018197:15089-15108 | Msa1364940:CDS | 60.0% |
| GGGTGTGCAACGACGTCGTA+TGG | - | tig0018197:15135-15154 | None:intergenic | 60.0% | |
| GGAACTAGCACGCGCCAGAT+GGG | - | tig0018197:15238-15257 | None:intergenic | 60.0% | |
| TGGAACTAGCACGCGCCAGA+TGG | - | tig0018197:15239-15258 | None:intergenic | 60.0% | |
| GGTGGTGTAGCGAACTTCGG+TGG | - | tig0018197:15259-15278 | None:intergenic | 60.0% | |
| ! | TCGCTCACCGCACTGGTAAG+AGG | + | tig0018197:15088-15107 | Msa1364940:CDS | 60.0% |
| ! | CGCTCACCGCACTGGTAAGA+GGG | + | tig0018197:15089-15108 | Msa1364940:CDS | 60.0% |
| GGGTGTGCAACGACGTCGTA+TGG | - | tig0018197:15135-15154 | None:intergenic | 60.0% | |
| GGAACTAGCACGCGCCAGAT+GGG | - | tig0018197:15238-15257 | None:intergenic | 60.0% | |
| TGGAACTAGCACGCGCCAGA+TGG | - | tig0018197:15239-15258 | None:intergenic | 60.0% | |
| GGTGGTGTAGCGAACTTCGG+TGG | - | tig0018197:15259-15278 | None:intergenic | 60.0% | |
| GCGCGTATCGCTCACCGCAC+TGG | + | tig0018197:15081-15100 | Msa1364940:CDS | 70.0% | |
| GCGCGTATCGCTCACCGCAC+TGG | + | tig0018197:15081-15100 | Msa1364940:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018197 | gene | 14681 | 15600 | 14681 | ID=Msa1364940;Name=Msa1364940 |
| tig0018197 | mRNA | 14681 | 15600 | 14681 | ID=Msa1364940-mRNA-1;Parent=Msa1364940;Name=Msa1364940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=84|1|1|1|1|1|2|280|156 |
| tig0018197 | exon | 14681 | 14842 | 14681 | ID=Msa1364940-mRNA-1:exon:14308;Parent=Msa1364940-mRNA-1 |
| tig0018197 | exon | 14928 | 15600 | 14928 | ID=Msa1364940-mRNA-1:exon:14309;Parent=Msa1364940-mRNA-1 |
| tig0018197 | five_prime_UTR | 14681 | 14764 | 14681 | ID=Msa1364940-mRNA-1:five_prime_utr;Parent=Msa1364940-mRNA-1 |
| tig0018197 | CDS | 14765 | 14842 | 14765 | ID=Msa1364940-mRNA-1:cds;Parent=Msa1364940-mRNA-1 |
| tig0018197 | CDS | 14928 | 15320 | 14928 | ID=Msa1364940-mRNA-1:cds;Parent=Msa1364940-mRNA-1 |
| tig0018197 | three_prime_UTR | 15321 | 15600 | 15321 | ID=Msa1364940-mRNA-1:three_prime_utr;Parent=Msa1364940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
