AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1417570

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1417570 MtrunA17_Chr3g0145621 87.179 156 7 1 1 143 1 156 3.04e-98 279
Msa1417570 MtrunA17_Chr4g0036931 69.811 159 29 3 1 143 1 156 2.53e-75 221
Msa1417570 MtrunA17_Chr5g0405811 54.717 159 54 2 1 143 1 157 1.28e-55 171
Msa1417570 MtrunA17_Chr1g0160201 47.742 155 61 4 1 143 1 147 1.23e-43 140
Msa1417570 MtrunA17_Chr8g0382721 54.098 122 50 3 22 143 38 153 6.71e-42 136
Msa1417570 MtrunA17_Chr3g0124411 55.738 122 46 3 22 143 39 152 2.55e-41 135
Msa1417570 MtrunA17_Chr3g0115421 50.820 122 53 2 22 143 35 149 2.37e-38 127
Msa1417570 MtrunA17_Chr5g0407821 41.830 153 71 3 1 143 1 145 1.94e-36 122
Msa1417570 MtrunA17_Chr7g0251491 41.935 155 69 3 1 143 25 170 9.08e-36 121
Msa1417570 MtrunA17_Chr6g0448861 39.375 160 75 2 1 143 1 155 2.01e-35 120
Msa1417570 MtrunA17_Chr5g0422891 34.839 155 81 4 1 143 1 147 4.20e-29 103
Msa1417570 MtrunA17_Chr2g0325601 37.313 134 70 5 22 143 11 142 1.28e-19 79.3
Msa1417570 MtrunA17_Chr6g0471231 35.556 135 67 5 22 143 13 140 1.11e-16 71.6
Msa1417570 MtrunA17_Chr1g0189221 39.560 91 50 2 23 109 63 152 1.91e-15 69.3
Msa1417570 MtrunA17_Chr3g0094841 34.959 123 67 3 23 143 126 237 9.66e-13 63.2
Msa1417570 MtrunA17_Chr6g0460361 37.273 110 61 6 39 143 4 110 1.47e-11 57.4
Msa1417570 MtrunA17_Chr7g0272571 45.614 57 30 1 23 79 43 98 3.83e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1417570 AT4G38580.1 68.590 156 33 2 1 143 1 153 1.53e-72 214
Msa1417570 AT4G38580.2 68.590 156 33 2 1 143 1 153 1.53e-72 214
Msa1417570 AT4G35060.1 65.385 156 38 3 1 143 1 153 3.60e-67 201
Msa1417570 AT5G66110.2 65.574 122 40 1 22 143 2 121 1.30e-57 175
Msa1417570 AT5G66110.3 65.574 122 40 1 22 143 28 147 4.66e-57 175
Msa1417570 AT5G66110.1 65.574 122 40 1 22 143 28 147 4.66e-57 175
Msa1417570 AT1G71050.1 51.266 158 56 5 1 143 1 152 3.90e-47 150
Msa1417570 AT1G22990.2 44.156 154 68 2 1 143 1 147 2.21e-42 137
Msa1417570 AT1G22990.1 42.767 159 68 2 1 143 1 152 1.23e-41 136
Msa1417570 AT4G08570.1 49.194 124 52 3 22 143 36 150 3.93e-36 122
Msa1417570 AT5G17450.1 40.127 157 72 4 1 143 1 149 2.05e-31 110
Msa1417570 AT4G39700.1 47.541 122 60 3 22 143 41 158 2.29e-31 110
Msa1417570 AT5G17450.2 43.396 106 51 3 39 143 8 105 1.24e-25 94.0
Msa1417570 AT1G06330.1 37.324 142 67 6 22 143 11 150 2.27e-20 81.6
Msa1417570 AT2G18196.2 32.800 125 78 4 23 143 3 125 3.01e-16 70.5
Msa1417570 AT2G18196.1 32.800 125 78 4 23 143 56 178 1.47e-15 70.1
Msa1417570 AT3G56891.2 33.333 144 72 5 22 143 2 143 2.15e-15 68.6
Msa1417570 AT3G56891.1 33.333 144 72 5 22 143 25 166 2.37e-15 69.3
Msa1417570 AT4G10465.1 31.200 125 80 3 23 143 61 183 1.17e-13 65.1
Msa1417570 AT1G29100.2 33.108 148 61 4 22 143 12 147 6.69e-13 62.4
Msa1417570 AT1G29100.1 33.108 148 61 4 22 143 6 141 8.22e-13 62.0
Msa1417570 AT1G56210.1 43.284 67 37 1 23 89 50 115 1.65e-11 60.8

Find 51 sgRNAs with CRISPR-Local

Find 132 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCAAGTATTATGCCTTT+TGG 0.248220 tig0024501:+8210 Msa1417570:three_prime_UTR
TGAAATTGTGAACCAATAAA+AGG 0.317677 tig0024501:-8281 None:intergenic
AGCACACAAGGTCACTGTTC+AGG 0.319616 tig0024501:+7842 Msa1417570:CDS
AATAATTTGCTCTTCTTCTT+CGG 0.323900 tig0024501:-8380 None:intergenic
TCGTACGTACCTTGTGCATA+TGG 0.340646 tig0024501:-7963 None:intergenic
TACGACAACAATCAGTATTC+TGG 0.342642 tig0024501:+8020 Msa1417570:CDS
ATACGCGCCACCACTTTGTT+AGG 0.355486 tig0024501:-7876 None:intergenic
TCTTCGGAAAATCAATGATA+AGG 0.403344 tig0024501:-8364 None:intergenic
TCGCTCACCGCACTGGTAAG+AGG 0.420324 tig0024501:+7898 Msa1417570:CDS
CTTTCCTATCAATATCAACT+TGG 0.425944 tig0024501:-7821 None:intergenic
GTAGTTGTTTCTAACATAAC+CGG 0.435319 tig0024501:-8000 None:intergenic
CAATTTCATATAATGATTTG+TGG 0.435765 tig0024501:+8296 Msa1417570:three_prime_UTR
AAGAGATAATATGGGTGCTC+TGG 0.436844 tig0024501:+7545 None:intergenic
GGGTGTGCAACGACGTCGTA+TGG 0.444075 tig0024501:-7942 None:intergenic
AATTTCATATAATGATTTGT+GGG 0.444929 tig0024501:+8297 Msa1417570:three_prime_UTR
ATTATTATTGTTATTAGTTG+TGG 0.451022 tig0024501:+8138 Msa1417570:three_prime_UTR
TGATTCGTAGTAGTAGTAGT+AGG 0.452275 tig0024501:+8252 Msa1417570:three_prime_UTR
CATATAGAACAAAATGAAGT+TGG 0.453237 tig0024501:-8167 None:intergenic
CAATGATAAGGCGATTGTAA+TGG 0.466760 tig0024501:-8352 None:intergenic
ACGACGTCGTATGGAACATA+TGG 0.471597 tig0024501:-7933 None:intergenic
TCAGTATTCTGGATCCCATC+TGG 0.473879 tig0024501:+8031 Msa1417570:CDS
TGAACCAAGTTGATATTGAT+AGG 0.475748 tig0024501:+7817 Msa1417570:CDS
GCACACAAGGTCACTGTTCA+GGG 0.478112 tig0024501:+7843 Msa1417570:CDS
TACGACAAGAAAGCACCTTC+CGG 0.490150 tig0024501:+7981 Msa1417570:CDS
ATGATATCACATGACAGAAC+AGG 0.494670 tig0024501:-8114 None:intergenic
CTGGTAAGAGGGCTGAGATA+TGG 0.502117 tig0024501:+7910 Msa1417570:CDS
AACATAGATAAATTTCCAAA+AGG 0.506301 tig0024501:-8225 None:intergenic
CGTACGTACCTTGTGCATAT+GGG 0.507821 tig0024501:-7962 None:intergenic
TGGAACTAGCACGCGCCAGA+TGG 0.513296 tig0024501:-8046 None:intergenic
GCGCGTATCGCTCACCGCAC+TGG 0.514553 tig0024501:+7891 Msa1417570:CDS
CGCTCACCGCACTGGTAAGA+GGG 0.517783 tig0024501:+7899 Msa1417570:CDS
TCTGAGCTATTTGACTGCTC+CGG 0.534149 tig0024501:+7576 Msa1417570:CDS
AAAGTGAGAAGGTCGGTGGA+AGG 0.544215 tig0024501:+7783 Msa1417570:CDS
GGAACTAGCACGCGCCAGAT+GGG 0.557432 tig0024501:-8045 None:intergenic
AGGTCGGTGGAAGGAATGAA+AGG 0.586836 tig0024501:+7792 Msa1417570:CDS
GAGAAAAGTGAGAAGGTCGG+TGG 0.602080 tig0024501:+7779 Msa1417570:CDS
AGCGGTGGTGTAGCGAACTT+CGG 0.605621 tig0024501:-8069 None:intergenic
TCACATGACAGAACAGGCGG+TGG 0.625825 tig0024501:-8108 None:intergenic
CGAGAGAAAAGTGAGAAGGT+CGG 0.626298 tig0024501:+7776 Msa1417570:CDS
TATTGATAGGAAAGCACACA+AGG 0.639331 tig0024501:+7830 Msa1417570:CDS
GATGCGAGAGAAAAGTGAGA+AGG 0.650873 tig0024501:+7772 Msa1417570:CDS
CACATGACAGAACAGGCGGT+GGG 0.664346 tig0024501:-8107 None:intergenic
TTGTTTCTAACATAACCGGA+AGG 0.675813 tig0024501:-7996 None:intergenic
TGTTGAACCTAACAAAGTGG+TGG 0.684270 tig0024501:+7869 Msa1417570:CDS
CACACAAGGTCACTGTTCAG+GGG 0.691299 tig0024501:+7844 Msa1417570:CDS
GGTGGTGTAGCGAACTTCGG+TGG 0.699721 tig0024501:-8066 None:intergenic
GAAAGTGAAGATGACTGCGA+AGG 0.700468 tig0024501:+7750 Msa1417570:CDS
ATATCACATGACAGAACAGG+CGG 0.726418 tig0024501:-8111 None:intergenic
GTTGCACACCCATATGCACA+AGG 0.727359 tig0024501:+7954 Msa1417570:CDS
GTATGTTGAACCTAACAAAG+TGG 0.728726 tig0024501:+7866 Msa1417570:CDS
TCTCAGCCCTCTTACCAGTG+CGG 0.734386 tig0024501:-7905 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAACATATGATATGAA+TGG - tig0024501:7655-7674 None:intergenic 15.0%
!!! ATTATTATTGTTATTAGTTG+TGG + tig0024501:8138-8157 Msa1417570:three_prime_UTR 15.0%
!!! AATTTCATATAATGATTTGT+GGG + tig0024501:8297-8316 Msa1417570:three_prime_UTR 15.0%
!! ATAATAACATATGATATGAA+TGG - tig0024501:7655-7674 None:intergenic 15.0%
!!! ATTATTATTGTTATTAGTTG+TGG + tig0024501:8138-8157 Msa1417570:three_prime_UTR 15.0%
!!! AATTTCATATAATGATTTGT+GGG + tig0024501:8297-8316 Msa1417570:three_prime_UTR 15.0%
!! ATATATTATTATTGACGTGA+TGG + tig0024501:7700-7719 Msa1417570:intron 20.0%
!! AACATAGATAAATTTCCAAA+AGG - tig0024501:8228-8247 None:intergenic 20.0%
!! CAATTTCATATAATGATTTG+TGG + tig0024501:8296-8315 Msa1417570:three_prime_UTR 20.0%
!! ATATATTATTATTGACGTGA+TGG + tig0024501:7700-7719 Msa1417570:intron 20.0%
!! AACATAGATAAATTTCCAAA+AGG - tig0024501:8228-8247 None:intergenic 20.0%
!! CAATTTCATATAATGATTTG+TGG + tig0024501:8296-8315 Msa1417570:three_prime_UTR 20.0%
! AACATATGATATGAATGGAA+TGG - tig0024501:7650-7669 None:intergenic 25.0%
! AAGAATGATATATGTACAGA+CGG + tig0024501:7723-7742 Msa1417570:intron 25.0%
! CATATAGAACAAAATGAAGT+TGG - tig0024501:8170-8189 None:intergenic 25.0%
!! CAACTTCATTTTGTTCTATA+TGG + tig0024501:8168-8187 Msa1417570:three_prime_UTR 25.0%
!! AAATCAAGTATTATGCCTTT+TGG + tig0024501:8210-8229 Msa1417570:three_prime_UTR 25.0%
! TGAAATTGTGAACCAATAAA+AGG - tig0024501:8284-8303 None:intergenic 25.0%
!!! AATAATTTGCTCTTCTTCTT+CGG - tig0024501:8383-8402 None:intergenic 25.0%
! AACATATGATATGAATGGAA+TGG - tig0024501:7650-7669 None:intergenic 25.0%
! AAGAATGATATATGTACAGA+CGG + tig0024501:7723-7742 Msa1417570:intron 25.0%
! CATATAGAACAAAATGAAGT+TGG - tig0024501:8170-8189 None:intergenic 25.0%
!! CAACTTCATTTTGTTCTATA+TGG + tig0024501:8168-8187 Msa1417570:three_prime_UTR 25.0%
!! AAATCAAGTATTATGCCTTT+TGG + tig0024501:8210-8229 Msa1417570:three_prime_UTR 25.0%
! TGAAATTGTGAACCAATAAA+AGG - tig0024501:8284-8303 None:intergenic 25.0%
!!! AATAATTTGCTCTTCTTCTT+CGG - tig0024501:8383-8402 None:intergenic 25.0%
CTATTACCTGAAATTGTTTG+CGG - tig0024501:7620-7639 None:intergenic 30.0%
ATGATATGAATGGAATGGAA+TGG - tig0024501:7645-7664 None:intergenic 30.0%
!! TGAACCAAGTTGATATTGAT+AGG + tig0024501:7817-7836 Msa1417570:CDS 30.0%
CTTTCCTATCAATATCAACT+TGG - tig0024501:7824-7843 None:intergenic 30.0%
!! GTAGTTGTTTCTAACATAAC+CGG - tig0024501:8003-8022 None:intergenic 30.0%
! CATTTTGTTCTATATGGAGA+TGG + tig0024501:8174-8193 Msa1417570:three_prime_UTR 30.0%
! AGTAGGTTACTACCTTTTAT+TGG + tig0024501:8269-8288 Msa1417570:three_prime_UTR 30.0%
TCTTCGGAAAATCAATGATA+AGG - tig0024501:8367-8386 None:intergenic 30.0%
CTATTACCTGAAATTGTTTG+CGG - tig0024501:7620-7639 None:intergenic 30.0%
ATGATATGAATGGAATGGAA+TGG - tig0024501:7645-7664 None:intergenic 30.0%
!! TGAACCAAGTTGATATTGAT+AGG + tig0024501:7817-7836 Msa1417570:CDS 30.0%
CTTTCCTATCAATATCAACT+TGG - tig0024501:7824-7843 None:intergenic 30.0%
!! GTAGTTGTTTCTAACATAAC+CGG - tig0024501:8003-8022 None:intergenic 30.0%
! CATTTTGTTCTATATGGAGA+TGG + tig0024501:8174-8193 Msa1417570:three_prime_UTR 30.0%
! AGTAGGTTACTACCTTTTAT+TGG + tig0024501:8269-8288 Msa1417570:three_prime_UTR 30.0%
TCTTCGGAAAATCAATGATA+AGG - tig0024501:8367-8386 None:intergenic 30.0%
AAATTGTTTGCGGTGTTTGT+GGG - tig0024501:7610-7629 None:intergenic 35.0%
! TATTGATAGGAAAGCACACA+AGG + tig0024501:7830-7849 Msa1417570:CDS 35.0%
GTATGTTGAACCTAACAAAG+TGG + tig0024501:7866-7885 Msa1417570:CDS 35.0%
!! TTGTTTCTAACATAACCGGA+AGG - tig0024501:7999-8018 None:intergenic 35.0%
TACGACAACAATCAGTATTC+TGG + tig0024501:8020-8039 Msa1417570:CDS 35.0%
ATGATATCACATGACAGAAC+AGG - tig0024501:8117-8136 None:intergenic 35.0%
TGATTCGTAGTAGTAGTAGT+AGG + tig0024501:8252-8271 Msa1417570:three_prime_UTR 35.0%
CAATGATAAGGCGATTGTAA+TGG - tig0024501:8355-8374 None:intergenic 35.0%
AAATTGTTTGCGGTGTTTGT+GGG - tig0024501:7610-7629 None:intergenic 35.0%
! TATTGATAGGAAAGCACACA+AGG + tig0024501:7830-7849 Msa1417570:CDS 35.0%
GTATGTTGAACCTAACAAAG+TGG + tig0024501:7866-7885 Msa1417570:CDS 35.0%
!! TTGTTTCTAACATAACCGGA+AGG - tig0024501:7999-8018 None:intergenic 35.0%
TACGACAACAATCAGTATTC+TGG + tig0024501:8020-8039 Msa1417570:CDS 35.0%
ATGATATCACATGACAGAAC+AGG - tig0024501:8117-8136 None:intergenic 35.0%
TGATTCGTAGTAGTAGTAGT+AGG + tig0024501:8252-8271 Msa1417570:three_prime_UTR 35.0%
CAATGATAAGGCGATTGTAA+TGG - tig0024501:8355-8374 None:intergenic 35.0%
GAAATTGTTTGCGGTGTTTG+TGG - tig0024501:7611-7630 None:intergenic 40.0%
CAAACACCGCAAACAATTTC+AGG + tig0024501:7611-7630 Msa1417570:intron 40.0%
TGTTGAACCTAACAAAGTGG+TGG + tig0024501:7869-7888 Msa1417570:CDS 40.0%
ATATCACATGACAGAACAGG+CGG - tig0024501:8114-8133 None:intergenic 40.0%
GAAATTGTTTGCGGTGTTTG+TGG - tig0024501:7611-7630 None:intergenic 40.0%
CAAACACCGCAAACAATTTC+AGG + tig0024501:7611-7630 Msa1417570:intron 40.0%
TGTTGAACCTAACAAAGTGG+TGG + tig0024501:7869-7888 Msa1417570:CDS 40.0%
ATATCACATGACAGAACAGG+CGG - tig0024501:8114-8133 None:intergenic 40.0%
TCTGAGCTATTTGACTGCTC+CGG + tig0024501:7576-7595 Msa1417570:CDS 45.0%
GAAAGTGAAGATGACTGCGA+AGG + tig0024501:7750-7769 Msa1417570:CDS 45.0%
GATGCGAGAGAAAAGTGAGA+AGG + tig0024501:7772-7791 Msa1417570:CDS 45.0%
CGAGAGAAAAGTGAGAAGGT+CGG + tig0024501:7776-7795 Msa1417570:CDS 45.0%
ACGACGTCGTATGGAACATA+TGG - tig0024501:7936-7955 None:intergenic 45.0%
CGTACGTACCTTGTGCATAT+GGG - tig0024501:7965-7984 None:intergenic 45.0%
TCGTACGTACCTTGTGCATA+TGG - tig0024501:7966-7985 None:intergenic 45.0%
!! TACGACAAGAAAGCACCTTC+CGG + tig0024501:7981-8000 Msa1417570:CDS 45.0%
TCAGTATTCTGGATCCCATC+TGG + tig0024501:8031-8050 Msa1417570:CDS 45.0%
TCTGAGCTATTTGACTGCTC+CGG + tig0024501:7576-7595 Msa1417570:CDS 45.0%
GAAAGTGAAGATGACTGCGA+AGG + tig0024501:7750-7769 Msa1417570:CDS 45.0%
GATGCGAGAGAAAAGTGAGA+AGG + tig0024501:7772-7791 Msa1417570:CDS 45.0%
CGAGAGAAAAGTGAGAAGGT+CGG + tig0024501:7776-7795 Msa1417570:CDS 45.0%
ACGACGTCGTATGGAACATA+TGG - tig0024501:7936-7955 None:intergenic 45.0%
CGTACGTACCTTGTGCATAT+GGG - tig0024501:7965-7984 None:intergenic 45.0%
TCGTACGTACCTTGTGCATA+TGG - tig0024501:7966-7985 None:intergenic 45.0%
!! TACGACAAGAAAGCACCTTC+CGG + tig0024501:7981-8000 Msa1417570:CDS 45.0%
TCAGTATTCTGGATCCCATC+TGG + tig0024501:8031-8050 Msa1417570:CDS 45.0%
GTGTTTGTGGGAACTTCCAC+CGG - tig0024501:7598-7617 None:intergenic 50.0%
GAGAAAAGTGAGAAGGTCGG+TGG + tig0024501:7779-7798 Msa1417570:CDS 50.0%
AAAGTGAGAAGGTCGGTGGA+AGG + tig0024501:7783-7802 Msa1417570:CDS 50.0%
AGGTCGGTGGAAGGAATGAA+AGG + tig0024501:7792-7811 Msa1417570:CDS 50.0%
AGCACACAAGGTCACTGTTC+AGG + tig0024501:7842-7861 Msa1417570:CDS 50.0%
GCACACAAGGTCACTGTTCA+GGG + tig0024501:7843-7862 Msa1417570:CDS 50.0%
CACACAAGGTCACTGTTCAG+GGG + tig0024501:7844-7863 Msa1417570:CDS 50.0%
ATACGCGCCACCACTTTGTT+AGG - tig0024501:7879-7898 None:intergenic 50.0%
CTGGTAAGAGGGCTGAGATA+TGG + tig0024501:7910-7929 Msa1417570:CDS 50.0%
GTTGCACACCCATATGCACA+AGG + tig0024501:7954-7973 Msa1417570:CDS 50.0%
! ATTTTCGTCGCTGAAAGCGG+TGG - tig0024501:8087-8106 None:intergenic 50.0%
! GGGATTTTCGTCGCTGAAAG+CGG - tig0024501:8090-8109 None:intergenic 50.0%
GTGTTTGTGGGAACTTCCAC+CGG - tig0024501:7598-7617 None:intergenic 50.0%
GAGAAAAGTGAGAAGGTCGG+TGG + tig0024501:7779-7798 Msa1417570:CDS 50.0%
AAAGTGAGAAGGTCGGTGGA+AGG + tig0024501:7783-7802 Msa1417570:CDS 50.0%
AGGTCGGTGGAAGGAATGAA+AGG + tig0024501:7792-7811 Msa1417570:CDS 50.0%
AGCACACAAGGTCACTGTTC+AGG + tig0024501:7842-7861 Msa1417570:CDS 50.0%
GCACACAAGGTCACTGTTCA+GGG + tig0024501:7843-7862 Msa1417570:CDS 50.0%
CACACAAGGTCACTGTTCAG+GGG + tig0024501:7844-7863 Msa1417570:CDS 50.0%
ATACGCGCCACCACTTTGTT+AGG - tig0024501:7879-7898 None:intergenic 50.0%
CTGGTAAGAGGGCTGAGATA+TGG + tig0024501:7910-7929 Msa1417570:CDS 50.0%
GTTGCACACCCATATGCACA+AGG + tig0024501:7954-7973 Msa1417570:CDS 50.0%
! ATTTTCGTCGCTGAAAGCGG+TGG - tig0024501:8087-8106 None:intergenic 50.0%
! GGGATTTTCGTCGCTGAAAG+CGG - tig0024501:8090-8109 None:intergenic 50.0%
GAGCTATTTGACTGCTCCGG+TGG + tig0024501:7579-7598 Msa1417570:intron 55.0%
TCTCAGCCCTCTTACCAGTG+CGG - tig0024501:7908-7927 None:intergenic 55.0%
AGCGGTGGTGTAGCGAACTT+CGG - tig0024501:8072-8091 None:intergenic 55.0%
CACATGACAGAACAGGCGGT+GGG - tig0024501:8110-8129 None:intergenic 55.0%
TCACATGACAGAACAGGCGG+TGG - tig0024501:8111-8130 None:intergenic 55.0%
GAGCTATTTGACTGCTCCGG+TGG + tig0024501:7579-7598 Msa1417570:intron 55.0%
TCTCAGCCCTCTTACCAGTG+CGG - tig0024501:7908-7927 None:intergenic 55.0%
AGCGGTGGTGTAGCGAACTT+CGG - tig0024501:8072-8091 None:intergenic 55.0%
CACATGACAGAACAGGCGGT+GGG - tig0024501:8110-8129 None:intergenic 55.0%
TCACATGACAGAACAGGCGG+TGG - tig0024501:8111-8130 None:intergenic 55.0%
! TCGCTCACCGCACTGGTAAG+AGG + tig0024501:7898-7917 Msa1417570:CDS 60.0%
! CGCTCACCGCACTGGTAAGA+GGG + tig0024501:7899-7918 Msa1417570:CDS 60.0%
GGGTGTGCAACGACGTCGTA+TGG - tig0024501:7945-7964 None:intergenic 60.0%
GGAACTAGCACGCGCCAGAT+GGG - tig0024501:8048-8067 None:intergenic 60.0%
TGGAACTAGCACGCGCCAGA+TGG - tig0024501:8049-8068 None:intergenic 60.0%
GGTGGTGTAGCGAACTTCGG+TGG - tig0024501:8069-8088 None:intergenic 60.0%
! TCGCTCACCGCACTGGTAAG+AGG + tig0024501:7898-7917 Msa1417570:CDS 60.0%
! CGCTCACCGCACTGGTAAGA+GGG + tig0024501:7899-7918 Msa1417570:CDS 60.0%
GGGTGTGCAACGACGTCGTA+TGG - tig0024501:7945-7964 None:intergenic 60.0%
GGAACTAGCACGCGCCAGAT+GGG - tig0024501:8048-8067 None:intergenic 60.0%
TGGAACTAGCACGCGCCAGA+TGG - tig0024501:8049-8068 None:intergenic 60.0%
GGTGGTGTAGCGAACTTCGG+TGG - tig0024501:8069-8088 None:intergenic 60.0%
GCGCGTATCGCTCACCGCAC+TGG + tig0024501:7891-7910 Msa1417570:CDS 70.0%
GCGCGTATCGCTCACCGCAC+TGG + tig0024501:7891-7910 Msa1417570:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0024501 gene 7555 8410 7555 ID=Msa1417570;Name=Msa1417570
tig0024501 mRNA 7555 8410 7555 ID=Msa1417570-mRNA-1;Parent=Msa1417570;Name=Msa1417570-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0.5|1|0|0|2|280|143
tig0024501 exon 7555 7597 7555 ID=Msa1417570-mRNA-1:exon:23573;Parent=Msa1417570-mRNA-1
tig0024501 exon 7742 8410 7742 ID=Msa1417570-mRNA-1:exon:23574;Parent=Msa1417570-mRNA-1
tig0024501 CDS 7555 7597 7555 ID=Msa1417570-mRNA-1:cds;Parent=Msa1417570-mRNA-1
tig0024501 CDS 7742 8130 7742 ID=Msa1417570-mRNA-1:cds;Parent=Msa1417570-mRNA-1
tig0024501 three_prime_UTR 8131 8410 8131 ID=Msa1417570-mRNA-1:three_prime_utr;Parent=Msa1417570-mRNA-1
Gene Sequence

>Msa1417570

ATGGGTGCTCTGGATCACATTTCTGAGCTATTTGACTGCTCCGACGGTGAAGAAAGTGAAGATGACTGCGAAGGATGCGAGAGAAAAGTGAGAAGGTCGGTGGAAGGAATGAAAGGTGTGAACCAAGTTGATATTGATAGGAAAGCACACAAGGTCACTGTTCAGGGGTATGTTGAACCTAACAAAGTGGTGGCGCGTATCGCTCACCGCACTGGTAAGAGGGCTGAGATATGGCCATATGTTCCATACGACGTCGTTGCACACCCATATGCACAAGGTACGTACGACAAGAAAGCACCTTCCGGTTATGTTAGAAACAACTACGACAACAATCAGTATTCTGGATCCCATCTGGCGCGTGCTAGTTCCACCGAAGTTCGCTACACCACCGCTTTCAGCGACGAAAATCCCACCGCCTGTTCTGTCATGTGA
Protein sequence

>Msa1417570

MGALDHISELFDCSDGEESEDDCEGCERKVRRSVEGMKGVNQVDIDRKAHKVTVQGYVEPNKVVARIAHRTGKRAEIWPYVPYDVVAHPYAQGTYDKKAPSGYVRNNYDNNQYSGSHLARASSTEVRYTTAFSDENPTACSVM*