Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436410 | XP_003594881.1 | 95.573 | 497 | 22 | 0 | 1 | 497 | 1 | 497 | 0.0 | 918 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436410 | sp|O49432|QRT3_ARATH | 61.522 | 460 | 160 | 5 | 38 | 495 | 37 | 481 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436410 | G7INE9 | 95.573 | 497 | 22 | 0 | 1 | 497 | 1 | 497 | 0.0 | 918 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0644980 | Msa1436410 | 0.802559 | 5.298124e-49 | -8.615850e-47 |
| Msa0650070 | Msa1436410 | 0.810206 | 1.293716e-50 | -8.615850e-47 |
| Msa1340710 | Msa1436410 | 0.846619 | 1.938484e-59 | -8.615850e-47 |
| Msa0243610 | Msa1436410 | 0.931507 | 3.407782e-94 | -8.615850e-47 |
| Msa1197590 | Msa1436410 | 0.803889 | 2.810650e-49 | -8.615850e-47 |
| Msa0534590 | Msa1436410 | 0.819763 | 9.790377e-53 | -8.615850e-47 |
| Msa0548620 | Msa1436410 | 0.809191 | 2.137436e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436410 | MtrunA17_Chr2g0296981 | 95.573 | 497 | 22 | 0 | 1 | 497 | 1 | 497 | 0.0 | 918 |
| Msa1436410 | MtrunA17_Chr6g0455291 | 69.880 | 498 | 141 | 4 | 1 | 497 | 5 | 494 | 0.0 | 652 |
| Msa1436410 | MtrunA17_Chr4g0052711 | 46.467 | 467 | 219 | 10 | 43 | 493 | 29 | 480 | 3.88e-139 | 409 |
| Msa1436410 | MtrunA17_Chr2g0297001 | 52.113 | 426 | 184 | 7 | 82 | 493 | 72 | 491 | 8.13e-136 | 401 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1436410 | AT4G20050.5 | 61.522 | 460 | 160 | 5 | 38 | 495 | 62 | 506 | 0.0 | 565 |
| Msa1436410 | AT4G20050.7 | 61.522 | 460 | 160 | 5 | 38 | 495 | 37 | 481 | 0.0 | 564 |
| Msa1436410 | AT4G20050.6 | 61.522 | 460 | 160 | 5 | 38 | 495 | 37 | 481 | 0.0 | 564 |
| Msa1436410 | AT4G20050.2 | 61.522 | 460 | 160 | 5 | 38 | 495 | 37 | 481 | 0.0 | 564 |
| Msa1436410 | AT4G20050.1 | 61.522 | 460 | 160 | 5 | 38 | 495 | 37 | 481 | 0.0 | 564 |
| Msa1436410 | AT4G20050.4 | 64.962 | 391 | 127 | 3 | 107 | 495 | 1 | 383 | 0.0 | 515 |
| Msa1436410 | AT4G20050.3 | 64.962 | 391 | 127 | 3 | 107 | 495 | 1 | 383 | 0.0 | 515 |
| Msa1436410 | AT4G20040.1 | 49.173 | 423 | 198 | 4 | 82 | 493 | 67 | 483 | 3.64e-136 | 402 |
Find 97 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTGTAATTGGTGTTTA+TGG | 0.186040 | tig0027935:+25396 | Msa1436410:CDS |
| AACTCTCAAGGACCTCTTAT+TGG | 0.199279 | tig0027935:+26502 | Msa1436410:CDS |
| GTTGTTTGTTTCATTGTAAT+TGG | 0.263362 | tig0027935:+25387 | Msa1436410:CDS |
| TGGTGTACATTGTTACAATA+AGG | 0.274737 | tig0027935:+26817 | Msa1436410:CDS |
| TACAATAAGGCCACTGGATT+CGG | 0.316472 | tig0027935:+26830 | Msa1436410:CDS |
| TGCAACGGGGATGAATTTAA+AGG | 0.328386 | tig0027935:+27144 | Msa1436410:CDS |
| AGGTGTTGAAATTGTTCATT+TGG | 0.332781 | tig0027935:+27066 | Msa1436410:CDS |
| TTATTGGATTCAAACTTTAG+AGG | 0.335089 | tig0027935:+26518 | Msa1436410:CDS |
| AGTTTCTTATGTATGTTTCA+TGG | 0.352507 | tig0027935:-26634 | Msa1436410:intergenic |
| TGCTATCTGAATTGCCTGTT+GGG | 0.359312 | tig0027935:-25749 | Msa1436410:intergenic |
| TTGATCAAGTTATTGTTGAT+AGG | 0.379420 | tig0027935:+27116 | Msa1436410:CDS |
| ATGTTCCCAACGCTGGTTAC+CGG | 0.382500 | tig0027935:-25912 | Msa1436410:intergenic |
| AGAATCATGTCTTGTTAAAG+AGG | 0.407306 | tig0027935:-25496 | Msa1436410:intergenic |
| CTCTGCTGCTATAGGAATCA+TGG | 0.408545 | tig0027935:+26769 | Msa1436410:CDS |
| GTTGATAGGAACGTTGCAAC+GGG | 0.411337 | tig0027935:+27130 | Msa1436410:CDS |
| GCCACTGGATTCGGCGGTAC+CGG | 0.416083 | tig0027935:+26839 | Msa1436410:CDS |
| CAGTACTCATTAAGTTCAAC+AGG | 0.423624 | tig0027935:+27262 | Msa1436410:CDS |
| ACATTTCTGATAGCATGATT+AGG | 0.424152 | tig0027935:-27295 | Msa1436410:intergenic |
| CAGAAAGTCACTCAAGTTAC+CGG | 0.424279 | tig0027935:+25893 | Msa1436410:CDS |
| TCAATGATGTAGCCATCATT+TGG | 0.425679 | tig0027935:-26410 | Msa1436410:intergenic |
| CTAGAAATATGAAGTTGAAC+AGG | 0.426194 | tig0027935:-26944 | Msa1436410:intergenic |
| GCTATAGGAATCATGGTAAC+TGG | 0.427357 | tig0027935:+26776 | Msa1436410:CDS |
| ACTTGATCAACTTGATGAAA+AGG | 0.437301 | tig0027935:-27103 | Msa1436410:intergenic |
| TACATAAGAAACTCTTTCCT+TGG | 0.440272 | tig0027935:+26644 | Msa1436410:CDS |
| ATTTCTAGTAGTTTCTTCCT+TGG | 0.441880 | tig0027935:+26959 | Msa1436410:CDS |
| ATTGTAGATAACATGTTCTC+TGG | 0.444931 | tig0027935:+27034 | Msa1436410:CDS |
| TCCATCAAATATCCTTCGCT+TGG | 0.449157 | tig0027935:-25813 | Msa1436410:intergenic |
| TGCAAGGGAATGGAACTTCA+TGG | 0.449669 | tig0027935:+27188 | Msa1436410:CDS |
| ATTACACATTTCACAACCAA+TGG | 0.452369 | tig0027935:+26593 | Msa1436410:CDS |
| TCCAAGCGAAGGATATTTGA+TGG | 0.464488 | tig0027935:+25812 | Msa1436410:CDS |
| GATGTCACGTGGTATACTCT+TGG | 0.468628 | tig0027935:-25714 | Msa1436410:intergenic |
| CCTTTCGTGTTTATCGCCTC+CGG | 0.470986 | tig0027935:-26681 | Msa1436410:intergenic |
| CCTACTAGGAAAATTTCTGA+TGG | 0.476121 | tig0027935:+25432 | Msa1436410:CDS |
| ATATCCTTCGCTTGGACCGT+TGG | 0.476727 | tig0027935:-25805 | Msa1436410:intergenic |
| ACCTCATCAAATGAAAATGA+TGG | 0.476960 | tig0027935:+26440 | Msa1436410:CDS |
| GTGCTATCTGAATTGCCTGT+TGG | 0.477189 | tig0027935:-25750 | Msa1436410:intergenic |
| AGTTATGTACTCAAAATTGT+AGG | 0.480837 | tig0027935:-26483 | Msa1436410:intergenic |
| CGCCTCCGGCGGTTATGTGT+TGG | 0.483145 | tig0027935:-26667 | Msa1436410:intergenic |
| TAAAGGCTACTGTCGCGAAA+AGG | 0.486640 | tig0027935:+27161 | Msa1436410:CDS |
| TAAAGTTTGAATCCAATAAG+AGG | 0.490425 | tig0027935:-26514 | Msa1436410:intergenic |
| ACCTCAGCTGGCTGAGAAGA+AGG | 0.497308 | tig0027935:-25555 | Msa1436410:intergenic |
| TGTATGTTTCATGGCCACTT+TGG | 0.501309 | tig0027935:-26625 | Msa1436410:intergenic |
| AAAAGGTCGTTGCAAGGGAA+TGG | 0.502322 | tig0027935:+27178 | Msa1436410:CDS |
| GTATACCACGTGACATCATA+TGG | 0.507968 | tig0027935:+25720 | Msa1436410:CDS |
| ATTGTATTATATACCTCAGC+TGG | 0.511049 | tig0027935:-25567 | Msa1436410:intergenic |
| GGTGCACAAATTAATCTTGA+AGG | 0.512636 | tig0027935:+25855 | Msa1436410:CDS |
| AAGGATTGTGAATTCTTACA+TGG | 0.512683 | tig0027935:+26895 | Msa1436410:CDS |
| ACCGTTGGCTGCATCTGCTA+TGG | 0.521251 | tig0027935:-25790 | Msa1436410:intergenic |
| CATTGTTACAATAAGGCCAC+TGG | 0.522380 | tig0027935:+26824 | Msa1436410:CDS |
| ATGGAAGGCATCAGTAACCT+TGG | 0.524813 | tig0027935:+25831 | Msa1436410:CDS |
| ACTTTGGACTAAAATTCCAT+TGG | 0.525845 | tig0027935:-26609 | Msa1436410:intergenic |
| GTCGCGAAAAGGTCGTTGCA+AGG | 0.526188 | tig0027935:+27172 | Msa1436410:CDS |
| TGTTTGTTTCATGCTTCTTG+AGG | 0.528462 | tig0027935:+25365 | Msa1436410:CDS |
| TCATATGGTGCAGACCCAAC+AGG | 0.528783 | tig0027935:+25735 | Msa1436410:CDS |
| TCAAAATTGTAGGATGATGA+AGG | 0.529691 | tig0027935:-26473 | Msa1436410:intergenic |
| TCCTTCTTCTCAGCCAGCTG+AGG | 0.533497 | tig0027935:+25554 | Msa1436410:CDS |
| AGGTAGTTTCAAATAAATTC+CGG | 0.535034 | tig0027935:-26858 | Msa1436410:intergenic |
| AAACACGAAAGGAATTTCTC+AGG | 0.538491 | tig0027935:+26692 | Msa1436410:CDS |
| AGTTACCGGTAACCAGCGTT+GGG | 0.539499 | tig0027935:+25907 | Msa1436410:CDS |
| AAGTTACCGGTAACCAGCGT+TGG | 0.543200 | tig0027935:+25906 | Msa1436410:CDS |
| TGGATTCAAACTTTAGAGGA+GGG | 0.543439 | tig0027935:+26522 | Msa1436410:CDS |
| TGACAGCATTATCGTTACCT+TGG | 0.545887 | tig0027935:-26730 | Msa1436410:intergenic |
| GATTAATTTGTGCACCTCCA+AGG | 0.547641 | tig0027935:-25848 | Msa1436410:intergenic |
| GATTCAAACTTTAGAGGAGG+GGG | 0.548301 | tig0027935:+26524 | Msa1436410:CDS |
| ATGTTCTCTGGATCAAATCA+AGG | 0.548900 | tig0027935:+27046 | Msa1436410:CDS |
| GCCATAGCAGATGCAGCCAA+CGG | 0.558955 | tig0027935:+25789 | Msa1436410:CDS |
| GCTGGCTGAGAAGAAGGAGA+AGG | 0.560665 | tig0027935:-25549 | Msa1436410:intergenic |
| GGAATTTATTTGAAACTACC+TGG | 0.560862 | tig0027935:+26860 | Msa1436410:CDS |
| GAAGGTGCAAAAGAAGATGA+TGG | 0.564254 | tig0027935:-25531 | Msa1436410:intergenic |
| GGATTCAAACTTTAGAGGAG+GGG | 0.565517 | tig0027935:+26523 | Msa1436410:CDS |
| GAAAGGAATTTCTCAGGCAC+AGG | 0.566208 | tig0027935:+26698 | Msa1436410:CDS |
| TGTTGATAGGAACGTTGCAA+CGG | 0.568090 | tig0027935:+27129 | Msa1436410:CDS |
| TTGGATTCAAACTTTAGAGG+AGG | 0.571436 | tig0027935:+26521 | Msa1436410:CDS |
| GCACAAATTAATCTTGAAGG+TGG | 0.580445 | tig0027935:+25858 | Msa1436410:CDS |
| TCGCGAAAAGGTCGTTGCAA+GGG | 0.583554 | tig0027935:+27173 | Msa1436410:CDS |
| TACCATGATGTTCCCAACGC+TGG | 0.586939 | tig0027935:-25919 | Msa1436410:intergenic |
| AGCGAAGGATATTTGATGGA+AGG | 0.588639 | tig0027935:+25816 | Msa1436410:CDS |
| CTTGGCCAACACATAACCGC+CGG | 0.589091 | tig0027935:+26662 | Msa1436410:CDS |
| GAAGGCATCAGTAACCTTGG+AGG | 0.592934 | tig0027935:+25834 | Msa1436410:CDS |
| ATCCTTGTTTGTGTTAAACC+AGG | 0.593807 | tig0027935:-26878 | Msa1436410:intergenic |
| CGGCGGTTATGTGTTGGCCA+AGG | 0.595647 | tig0027935:-26661 | Msa1436410:intergenic |
| AGAGAACATGTTATCTACAA+TGG | 0.597546 | tig0027935:-27032 | Msa1436410:intergenic |
| TCATGCTATCAGAAATGTGT+CGG | 0.600119 | tig0027935:+27300 | Msa1436410:CDS |
| TCCGGTACCGCCGAATCCAG+TGG | 0.602767 | tig0027935:-26840 | Msa1436410:intergenic |
| GCAGCCAACGGTCCAAGCGA+AGG | 0.606415 | tig0027935:+25801 | Msa1436410:CDS |
| GGCACAGGAATAAACATCCA+AGG | 0.625123 | tig0027935:+26713 | Msa1436410:CDS |
| AATAAGGCCACTGGATTCGG+CGG | 0.629975 | tig0027935:+26833 | Msa1436410:CDS |
| TACCTGGTTTAACACAAACA+AGG | 0.631189 | tig0027935:+26876 | Msa1436410:CDS |
| AACCAGCGTTGGGAACATCA+TGG | 0.637299 | tig0027935:+25917 | Msa1436410:CDS |
| AGCAGAGAAAATTACAACAT+CGG | 0.644559 | tig0027935:-26753 | Msa1436410:intergenic |
| ATTGTGTTGAAATCTATGAA+AGG | 0.648167 | tig0027935:+26992 | Msa1436410:CDS |
| GGCCAACACATAACCGCCGG+AGG | 0.651132 | tig0027935:+26665 | Msa1436410:CDS |
| TTCGTGTTTATCGCCTCCGG+CGG | 0.651957 | tig0027935:-26678 | Msa1436410:intergenic |
| CTGCACCATATGATGTCACG+TGG | 0.660523 | tig0027935:-25725 | Msa1436410:intergenic |
| CCGGAGGCGATAAACACGAA+AGG | 0.669288 | tig0027935:+26681 | Msa1436410:CDS |
| ACACAATATTCGCATCACCA+AGG | 0.694010 | tig0027935:-26976 | Msa1436410:intergenic |
| TTGATAGGAACGTTGCAACG+GGG | 0.722305 | tig0027935:+27131 | Msa1436410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCATACTGTAAAAAAAAA+AGG | - | tig0027935:26065-26084 | Msa1436410:intergenic | 15.0% |
| !! | AAAACTAATTATTTGACAAT+TGG | + | tig0027935:26104-26123 | Msa1436410:intron | 15.0% |
| !!! | TTTTTGTTGTTTTAATTTGA+TGG | + | tig0027935:26343-26362 | Msa1436410:intron | 15.0% |
| !! | TTTCATACTGTAAAAAAAAA+AGG | - | tig0027935:26065-26084 | Msa1436410:intergenic | 15.0% |
| !! | AAAACTAATTATTTGACAAT+TGG | + | tig0027935:26104-26123 | Msa1436410:intron | 15.0% |
| !!! | TTTTTGTTGTTTTAATTTGA+TGG | + | tig0027935:26343-26362 | Msa1436410:intron | 15.0% |
| !!! | TAATTTTAGTAGAGAATACT+AGG | + | tig0027935:25599-25618 | Msa1436410:intron | 20.0% |
| !!! | ATGATTTTTTTTTGTTGTGT+AGG | + | tig0027935:25680-25699 | Msa1436410:intron | 20.0% |
| !!! | TGATTTTTTTTTGTTGTGTA+GGG | + | tig0027935:25681-25700 | Msa1436410:intron | 20.0% |
| !!! | ATAATTAGTTTTTCTACAGT+TGG | - | tig0027935:26096-26115 | Msa1436410:intergenic | 20.0% |
| !! | ATTGTCTCAAAAATTGAATT+TGG | - | tig0027935:26156-26175 | Msa1436410:intergenic | 20.0% |
| !!! | TTTAGTATTTTTAGTCATGA+TGG | + | tig0027935:26185-26204 | Msa1436410:intron | 20.0% |
| !!! | TAATTTTAGTAGAGAATACT+AGG | + | tig0027935:25599-25618 | Msa1436410:intron | 20.0% |
| !!! | ATGATTTTTTTTTGTTGTGT+AGG | + | tig0027935:25680-25699 | Msa1436410:intron | 20.0% |
| !!! | TGATTTTTTTTTGTTGTGTA+GGG | + | tig0027935:25681-25700 | Msa1436410:intron | 20.0% |
| !!! | ATAATTAGTTTTTCTACAGT+TGG | - | tig0027935:26096-26115 | Msa1436410:intergenic | 20.0% |
| !! | ATTGTCTCAAAAATTGAATT+TGG | - | tig0027935:26156-26175 | Msa1436410:intergenic | 20.0% |
| !!! | TTTAGTATTTTTAGTCATGA+TGG | + | tig0027935:26185-26204 | Msa1436410:intron | 20.0% |
| ! | GTTGTTTGTTTCATTGTAAT+TGG | + | tig0027935:25387-25406 | Msa1436410:CDS | 25.0% |
| !! | TTCATTGTAATTGGTGTTTA+TGG | + | tig0027935:25396-25415 | Msa1436410:CDS | 25.0% |
| ! | AAACTTAGGTACAATGTTAT+AGG | - | tig0027935:25632-25651 | Msa1436410:intergenic | 25.0% |
| !! | ATAGTCAATTCTCATTTTCT+TGG | - | tig0027935:26233-26252 | Msa1436410:intergenic | 25.0% |
| !!! | AAAATCATCTGAAGCTTTTA+TGG | - | tig0027935:26390-26409 | Msa1436410:intergenic | 25.0% |
| ! | AGTTATGTACTCAAAATTGT+AGG | - | tig0027935:26486-26505 | Msa1436410:intergenic | 25.0% |
| ! | TAAAGTTTGAATCCAATAAG+AGG | - | tig0027935:26517-26536 | Msa1436410:intergenic | 25.0% |
| ! | TTATTGGATTCAAACTTTAG+AGG | + | tig0027935:26518-26537 | Msa1436410:CDS | 25.0% |
| ! | AGTTTCTTATGTATGTTTCA+TGG | - | tig0027935:26637-26656 | Msa1436410:intergenic | 25.0% |
| ! | AGGTAGTTTCAAATAAATTC+CGG | - | tig0027935:26861-26880 | Msa1436410:intergenic | 25.0% |
| ! | ATTGTGTTGAAATCTATGAA+AGG | + | tig0027935:26992-27011 | Msa1436410:CDS | 25.0% |
| !!! | TCTATGAAAGGTGTTTTAAA+TGG | + | tig0027935:27004-27023 | Msa1436410:CDS | 25.0% |
| ! | TTGATCAAGTTATTGTTGAT+AGG | + | tig0027935:27116-27135 | Msa1436410:CDS | 25.0% |
| !! | TGAACATTTTTGATAAGGTT+AGG | - | tig0027935:27244-27263 | Msa1436410:intergenic | 25.0% |
| !!! | AGTACTGAACATTTTTGATA+AGG | - | tig0027935:27249-27268 | Msa1436410:intergenic | 25.0% |
| ! | GTTGTTTGTTTCATTGTAAT+TGG | + | tig0027935:25387-25406 | Msa1436410:CDS | 25.0% |
| !! | TTCATTGTAATTGGTGTTTA+TGG | + | tig0027935:25396-25415 | Msa1436410:CDS | 25.0% |
| ! | AAACTTAGGTACAATGTTAT+AGG | - | tig0027935:25632-25651 | Msa1436410:intergenic | 25.0% |
| !! | ATAGTCAATTCTCATTTTCT+TGG | - | tig0027935:26233-26252 | Msa1436410:intergenic | 25.0% |
| !!! | AAAATCATCTGAAGCTTTTA+TGG | - | tig0027935:26390-26409 | Msa1436410:intergenic | 25.0% |
| ! | AGTTATGTACTCAAAATTGT+AGG | - | tig0027935:26486-26505 | Msa1436410:intergenic | 25.0% |
| ! | TAAAGTTTGAATCCAATAAG+AGG | - | tig0027935:26517-26536 | Msa1436410:intergenic | 25.0% |
| ! | TTATTGGATTCAAACTTTAG+AGG | + | tig0027935:26518-26537 | Msa1436410:CDS | 25.0% |
| ! | AGTTTCTTATGTATGTTTCA+TGG | - | tig0027935:26637-26656 | Msa1436410:intergenic | 25.0% |
| ! | AGGTAGTTTCAAATAAATTC+CGG | - | tig0027935:26861-26880 | Msa1436410:intergenic | 25.0% |
| ! | ATTGTGTTGAAATCTATGAA+AGG | + | tig0027935:26992-27011 | Msa1436410:CDS | 25.0% |
| !!! | TCTATGAAAGGTGTTTTAAA+TGG | + | tig0027935:27004-27023 | Msa1436410:CDS | 25.0% |
| ! | TTGATCAAGTTATTGTTGAT+AGG | + | tig0027935:27116-27135 | Msa1436410:CDS | 25.0% |
| !! | TGAACATTTTTGATAAGGTT+AGG | - | tig0027935:27244-27263 | Msa1436410:intergenic | 25.0% |
| !!! | AGTACTGAACATTTTTGATA+AGG | - | tig0027935:27249-27268 | Msa1436410:intergenic | 25.0% |
| GTGACAAAAATTTACCTACT+AGG | + | tig0027935:25418-25437 | Msa1436410:CDS | 30.0% | |
| ! | AGAATCATGTCTTGTTAAAG+AGG | - | tig0027935:25499-25518 | Msa1436410:intergenic | 30.0% |
| ATTGTATTATATACCTCAGC+TGG | - | tig0027935:25570-25589 | Msa1436410:intergenic | 30.0% | |
| !!! | GGAAGTGTTTTAAGACTTTA+TGG | + | tig0027935:26125-26144 | Msa1436410:intron | 30.0% |
| !!! | TGTTTTAAGACTTTATGGCT+AGG | + | tig0027935:26130-26149 | Msa1436410:intron | 30.0% |
| TTGATGGAAAAACAGATACA+TGG | + | tig0027935:26359-26378 | Msa1436410:intron | 30.0% | |
| ! | TCAGATGATTTTCCAAATGA+TGG | + | tig0027935:26398-26417 | Msa1436410:CDS | 30.0% |
| ACCTCATCAAATGAAAATGA+TGG | + | tig0027935:26440-26459 | Msa1436410:CDS | 30.0% | |
| ! | TCCATCATTTTCATTTGATG+AGG | - | tig0027935:26444-26463 | Msa1436410:intergenic | 30.0% |
| TCAAAATTGTAGGATGATGA+AGG | - | tig0027935:26476-26495 | Msa1436410:intergenic | 30.0% | |
| !! | TTTTGAGTACATAACTCTCA+AGG | + | tig0027935:26490-26509 | Msa1436410:CDS | 30.0% |
| ATTACACATTTCACAACCAA+TGG | + | tig0027935:26593-26612 | Msa1436410:CDS | 30.0% | |
| ACTTTGGACTAAAATTCCAT+TGG | - | tig0027935:26612-26631 | Msa1436410:intergenic | 30.0% | |
| !! | AATGGAATTTTAGTCCAAAG+TGG | + | tig0027935:26611-26630 | Msa1436410:CDS | 30.0% |
| TACATAAGAAACTCTTTCCT+TGG | + | tig0027935:26644-26663 | Msa1436410:CDS | 30.0% | |
| AGCAGAGAAAATTACAACAT+CGG | - | tig0027935:26756-26775 | Msa1436410:intergenic | 30.0% | |
| TGGTGTACATTGTTACAATA+AGG | + | tig0027935:26817-26836 | Msa1436410:CDS | 30.0% | |
| ! | GGAATTTATTTGAAACTACC+TGG | + | tig0027935:26860-26879 | Msa1436410:CDS | 30.0% |
| AAGGATTGTGAATTCTTACA+TGG | + | tig0027935:26895-26914 | Msa1436410:CDS | 30.0% | |
| CTAGAAATATGAAGTTGAAC+AGG | - | tig0027935:26947-26966 | Msa1436410:intergenic | 30.0% | |
| !! | ATTTCTAGTAGTTTCTTCCT+TGG | + | tig0027935:26959-26978 | Msa1436410:CDS | 30.0% |
| AGAGAACATGTTATCTACAA+TGG | - | tig0027935:27035-27054 | Msa1436410:intergenic | 30.0% | |
| ATTGTAGATAACATGTTCTC+TGG | + | tig0027935:27034-27053 | Msa1436410:CDS | 30.0% | |
| !! | AGGTGTTGAAATTGTTCATT+TGG | + | tig0027935:27066-27085 | Msa1436410:CDS | 30.0% |
| ACTTGATCAACTTGATGAAA+AGG | - | tig0027935:27106-27125 | Msa1436410:intergenic | 30.0% | |
| ACATTTCTGATAGCATGATT+AGG | - | tig0027935:27298-27317 | Msa1436410:intergenic | 30.0% | |
| GTGACAAAAATTTACCTACT+AGG | + | tig0027935:25418-25437 | Msa1436410:CDS | 30.0% | |
| ! | AGAATCATGTCTTGTTAAAG+AGG | - | tig0027935:25499-25518 | Msa1436410:intergenic | 30.0% |
| ATTGTATTATATACCTCAGC+TGG | - | tig0027935:25570-25589 | Msa1436410:intergenic | 30.0% | |
| !!! | GGAAGTGTTTTAAGACTTTA+TGG | + | tig0027935:26125-26144 | Msa1436410:intron | 30.0% |
| !!! | TGTTTTAAGACTTTATGGCT+AGG | + | tig0027935:26130-26149 | Msa1436410:intron | 30.0% |
| TTGATGGAAAAACAGATACA+TGG | + | tig0027935:26359-26378 | Msa1436410:intron | 30.0% | |
| ! | TCAGATGATTTTCCAAATGA+TGG | + | tig0027935:26398-26417 | Msa1436410:CDS | 30.0% |
| ACCTCATCAAATGAAAATGA+TGG | + | tig0027935:26440-26459 | Msa1436410:CDS | 30.0% | |
| ! | TCCATCATTTTCATTTGATG+AGG | - | tig0027935:26444-26463 | Msa1436410:intergenic | 30.0% |
| TCAAAATTGTAGGATGATGA+AGG | - | tig0027935:26476-26495 | Msa1436410:intergenic | 30.0% | |
| !! | TTTTGAGTACATAACTCTCA+AGG | + | tig0027935:26490-26509 | Msa1436410:CDS | 30.0% |
| ATTACACATTTCACAACCAA+TGG | + | tig0027935:26593-26612 | Msa1436410:CDS | 30.0% | |
| ACTTTGGACTAAAATTCCAT+TGG | - | tig0027935:26612-26631 | Msa1436410:intergenic | 30.0% | |
| !! | AATGGAATTTTAGTCCAAAG+TGG | + | tig0027935:26611-26630 | Msa1436410:CDS | 30.0% |
| TACATAAGAAACTCTTTCCT+TGG | + | tig0027935:26644-26663 | Msa1436410:CDS | 30.0% | |
| AGCAGAGAAAATTACAACAT+CGG | - | tig0027935:26756-26775 | Msa1436410:intergenic | 30.0% | |
| TGGTGTACATTGTTACAATA+AGG | + | tig0027935:26817-26836 | Msa1436410:CDS | 30.0% | |
| ! | GGAATTTATTTGAAACTACC+TGG | + | tig0027935:26860-26879 | Msa1436410:CDS | 30.0% |
| AAGGATTGTGAATTCTTACA+TGG | + | tig0027935:26895-26914 | Msa1436410:CDS | 30.0% | |
| CTAGAAATATGAAGTTGAAC+AGG | - | tig0027935:26947-26966 | Msa1436410:intergenic | 30.0% | |
| !! | ATTTCTAGTAGTTTCTTCCT+TGG | + | tig0027935:26959-26978 | Msa1436410:CDS | 30.0% |
| AGAGAACATGTTATCTACAA+TGG | - | tig0027935:27035-27054 | Msa1436410:intergenic | 30.0% | |
| ATTGTAGATAACATGTTCTC+TGG | + | tig0027935:27034-27053 | Msa1436410:CDS | 30.0% | |
| !! | AGGTGTTGAAATTGTTCATT+TGG | + | tig0027935:27066-27085 | Msa1436410:CDS | 30.0% |
| ACTTGATCAACTTGATGAAA+AGG | - | tig0027935:27106-27125 | Msa1436410:intergenic | 30.0% | |
| ACATTTCTGATAGCATGATT+AGG | - | tig0027935:27298-27317 | Msa1436410:intergenic | 30.0% | |
| TGTTTGTTTCATGCTTCTTG+AGG | + | tig0027935:25365-25384 | Msa1436410:CDS | 35.0% | |
| ! | CCATCAGAAATTTTCCTAGT+AGG | - | tig0027935:25435-25454 | Msa1436410:intergenic | 35.0% |
| CCTACTAGGAAAATTTCTGA+TGG | + | tig0027935:25432-25451 | Msa1436410:CDS | 35.0% | |
| GTACCTAAGTTTGTCATTGT+CGG | + | tig0027935:25640-25659 | Msa1436410:intron | 35.0% | |
| TTTCCGACAATGACAAACTT+AGG | - | tig0027935:25646-25665 | Msa1436410:intergenic | 35.0% | |
| GGTGCACAAATTAATCTTGA+AGG | + | tig0027935:25855-25874 | Msa1436410:CDS | 35.0% | |
| GCACAAATTAATCTTGAAGG+TGG | + | tig0027935:25858-25877 | Msa1436410:CDS | 35.0% | |
| AGCAAATGAAACAATTTCGC+AGG | - | tig0027935:25947-25966 | Msa1436410:intergenic | 35.0% | |
| ATGGAAAAACAGATACATGG+AGG | + | tig0027935:26362-26381 | Msa1436410:intron | 35.0% | |
| TCAATGATGTAGCCATCATT+TGG | - | tig0027935:26413-26432 | Msa1436410:intergenic | 35.0% | |
| ! | TTGGATTCAAACTTTAGAGG+AGG | + | tig0027935:26521-26540 | Msa1436410:CDS | 35.0% |
| ! | TGGATTCAAACTTTAGAGGA+GGG | + | tig0027935:26522-26541 | Msa1436410:CDS | 35.0% |
| AAACACGAAAGGAATTTCTC+AGG | + | tig0027935:26692-26711 | Msa1436410:CDS | 35.0% | |
| ! | GTAATTTTCTCTGCTGCTAT+AGG | + | tig0027935:26761-26780 | Msa1436410:CDS | 35.0% |
| TACCTGGTTTAACACAAACA+AGG | + | tig0027935:26876-26895 | Msa1436410:CDS | 35.0% | |
| ! | ATCCTTGTTTGTGTTAAACC+AGG | - | tig0027935:26881-26900 | Msa1436410:intergenic | 35.0% |
| ATGTTCTCTGGATCAAATCA+AGG | + | tig0027935:27046-27065 | Msa1436410:CDS | 35.0% | |
| CAGTACTCATTAAGTTCAAC+AGG | + | tig0027935:27262-27281 | Msa1436410:CDS | 35.0% | |
| TCATGCTATCAGAAATGTGT+CGG | + | tig0027935:27300-27319 | Msa1436410:CDS | 35.0% | |
| TGTTTGTTTCATGCTTCTTG+AGG | + | tig0027935:25365-25384 | Msa1436410:CDS | 35.0% | |
| ! | CCATCAGAAATTTTCCTAGT+AGG | - | tig0027935:25435-25454 | Msa1436410:intergenic | 35.0% |
| CCTACTAGGAAAATTTCTGA+TGG | + | tig0027935:25432-25451 | Msa1436410:CDS | 35.0% | |
| GTACCTAAGTTTGTCATTGT+CGG | + | tig0027935:25640-25659 | Msa1436410:intron | 35.0% | |
| TTTCCGACAATGACAAACTT+AGG | - | tig0027935:25646-25665 | Msa1436410:intergenic | 35.0% | |
| GGTGCACAAATTAATCTTGA+AGG | + | tig0027935:25855-25874 | Msa1436410:CDS | 35.0% | |
| GCACAAATTAATCTTGAAGG+TGG | + | tig0027935:25858-25877 | Msa1436410:CDS | 35.0% | |
| AGCAAATGAAACAATTTCGC+AGG | - | tig0027935:25947-25966 | Msa1436410:intergenic | 35.0% | |
| ATGGAAAAACAGATACATGG+AGG | + | tig0027935:26362-26381 | Msa1436410:intron | 35.0% | |
| TCAATGATGTAGCCATCATT+TGG | - | tig0027935:26413-26432 | Msa1436410:intergenic | 35.0% | |
| ! | TTGGATTCAAACTTTAGAGG+AGG | + | tig0027935:26521-26540 | Msa1436410:CDS | 35.0% |
| ! | TGGATTCAAACTTTAGAGGA+GGG | + | tig0027935:26522-26541 | Msa1436410:CDS | 35.0% |
| AAACACGAAAGGAATTTCTC+AGG | + | tig0027935:26692-26711 | Msa1436410:CDS | 35.0% | |
| ! | GTAATTTTCTCTGCTGCTAT+AGG | + | tig0027935:26761-26780 | Msa1436410:CDS | 35.0% |
| TACCTGGTTTAACACAAACA+AGG | + | tig0027935:26876-26895 | Msa1436410:CDS | 35.0% | |
| ! | ATCCTTGTTTGTGTTAAACC+AGG | - | tig0027935:26881-26900 | Msa1436410:intergenic | 35.0% |
| ATGTTCTCTGGATCAAATCA+AGG | + | tig0027935:27046-27065 | Msa1436410:CDS | 35.0% | |
| CAGTACTCATTAAGTTCAAC+AGG | + | tig0027935:27262-27281 | Msa1436410:CDS | 35.0% | |
| TCATGCTATCAGAAATGTGT+CGG | + | tig0027935:27300-27319 | Msa1436410:CDS | 35.0% | |
| ! | GAAGGTGCAAAAGAAGATGA+TGG | - | tig0027935:25534-25553 | Msa1436410:intergenic | 40.0% |
| GTATACCACGTGACATCATA+TGG | + | tig0027935:25720-25739 | Msa1436410:CDS | 40.0% | |
| TGCTATCTGAATTGCCTGTT+GGG | - | tig0027935:25752-25771 | Msa1436410:intergenic | 40.0% | |
| TCCAAGCGAAGGATATTTGA+TGG | + | tig0027935:25812-25831 | Msa1436410:CDS | 40.0% | |
| TCCATCAAATATCCTTCGCT+TGG | - | tig0027935:25816-25835 | Msa1436410:intergenic | 40.0% | |
| AGCGAAGGATATTTGATGGA+AGG | + | tig0027935:25816-25835 | Msa1436410:CDS | 40.0% | |
| !! | GATTAATTTGTGCACCTCCA+AGG | - | tig0027935:25851-25870 | Msa1436410:intergenic | 40.0% |
| CAGAAAGTCACTCAAGTTAC+CGG | + | tig0027935:25893-25912 | Msa1436410:CDS | 40.0% | |
| ! | ACTGTAGAAACTGATTCTCG+AGG | + | tig0027935:26009-26028 | Msa1436410:intron | 40.0% |
| ! | AGTCATGATGGTGAAGTAGT+TGG | + | tig0027935:26197-26216 | Msa1436410:intron | 40.0% |
| AACTCTCAAGGACCTCTTAT+TGG | + | tig0027935:26502-26521 | Msa1436410:CDS | 40.0% | |
| ! | GGATTCAAACTTTAGAGGAG+GGG | + | tig0027935:26523-26542 | Msa1436410:CDS | 40.0% |
| ! | GATTCAAACTTTAGAGGAGG+GGG | + | tig0027935:26524-26543 | Msa1436410:CDS | 40.0% |
| TGTATGTTTCATGGCCACTT+TGG | - | tig0027935:26628-26647 | Msa1436410:intergenic | 40.0% | |
| TGACAGCATTATCGTTACCT+TGG | - | tig0027935:26733-26752 | Msa1436410:intergenic | 40.0% | |
| GCTATAGGAATCATGGTAAC+TGG | + | tig0027935:26776-26795 | Msa1436410:CDS | 40.0% | |
| ! | GGTCAAGCAAACACATTTTC+TGG | + | tig0027935:26797-26816 | Msa1436410:CDS | 40.0% |
| CATTGTTACAATAAGGCCAC+TGG | + | tig0027935:26824-26843 | Msa1436410:CDS | 40.0% | |
| TACAATAAGGCCACTGGATT+CGG | + | tig0027935:26830-26849 | Msa1436410:CDS | 40.0% | |
| ACACAATATTCGCATCACCA+AGG | - | tig0027935:26979-26998 | Msa1436410:intergenic | 40.0% | |
| ! | TGTTGATAGGAACGTTGCAA+CGG | + | tig0027935:27129-27148 | Msa1436410:CDS | 40.0% |
| TGCAACGGGGATGAATTTAA+AGG | + | tig0027935:27144-27163 | Msa1436410:CDS | 40.0% | |
| ! | GAAGGTGCAAAAGAAGATGA+TGG | - | tig0027935:25534-25553 | Msa1436410:intergenic | 40.0% |
| GTATACCACGTGACATCATA+TGG | + | tig0027935:25720-25739 | Msa1436410:CDS | 40.0% | |
| TGCTATCTGAATTGCCTGTT+GGG | - | tig0027935:25752-25771 | Msa1436410:intergenic | 40.0% | |
| TCCAAGCGAAGGATATTTGA+TGG | + | tig0027935:25812-25831 | Msa1436410:CDS | 40.0% | |
| TCCATCAAATATCCTTCGCT+TGG | - | tig0027935:25816-25835 | Msa1436410:intergenic | 40.0% | |
| AGCGAAGGATATTTGATGGA+AGG | + | tig0027935:25816-25835 | Msa1436410:CDS | 40.0% | |
| !! | GATTAATTTGTGCACCTCCA+AGG | - | tig0027935:25851-25870 | Msa1436410:intergenic | 40.0% |
| CAGAAAGTCACTCAAGTTAC+CGG | + | tig0027935:25893-25912 | Msa1436410:CDS | 40.0% | |
| ! | ACTGTAGAAACTGATTCTCG+AGG | + | tig0027935:26009-26028 | Msa1436410:intron | 40.0% |
| ! | AGTCATGATGGTGAAGTAGT+TGG | + | tig0027935:26197-26216 | Msa1436410:intron | 40.0% |
| AACTCTCAAGGACCTCTTAT+TGG | + | tig0027935:26502-26521 | Msa1436410:CDS | 40.0% | |
| ! | GGATTCAAACTTTAGAGGAG+GGG | + | tig0027935:26523-26542 | Msa1436410:CDS | 40.0% |
| ! | GATTCAAACTTTAGAGGAGG+GGG | + | tig0027935:26524-26543 | Msa1436410:CDS | 40.0% |
| TGTATGTTTCATGGCCACTT+TGG | - | tig0027935:26628-26647 | Msa1436410:intergenic | 40.0% | |
| TGACAGCATTATCGTTACCT+TGG | - | tig0027935:26733-26752 | Msa1436410:intergenic | 40.0% | |
| GCTATAGGAATCATGGTAAC+TGG | + | tig0027935:26776-26795 | Msa1436410:CDS | 40.0% | |
| ! | GGTCAAGCAAACACATTTTC+TGG | + | tig0027935:26797-26816 | Msa1436410:CDS | 40.0% |
| CATTGTTACAATAAGGCCAC+TGG | + | tig0027935:26824-26843 | Msa1436410:CDS | 40.0% | |
| TACAATAAGGCCACTGGATT+CGG | + | tig0027935:26830-26849 | Msa1436410:CDS | 40.0% | |
| ACACAATATTCGCATCACCA+AGG | - | tig0027935:26979-26998 | Msa1436410:intergenic | 40.0% | |
| ! | TGTTGATAGGAACGTTGCAA+CGG | + | tig0027935:27129-27148 | Msa1436410:CDS | 40.0% |
| TGCAACGGGGATGAATTTAA+AGG | + | tig0027935:27144-27163 | Msa1436410:CDS | 40.0% | |
| GATGTCACGTGGTATACTCT+TGG | - | tig0027935:25717-25736 | Msa1436410:intergenic | 45.0% | |
| GTGCTATCTGAATTGCCTGT+TGG | - | tig0027935:25753-25772 | Msa1436410:intergenic | 45.0% | |
| !! | ATGGAAGGCATCAGTAACCT+TGG | + | tig0027935:25831-25850 | Msa1436410:CDS | 45.0% |
| GAAAGGAATTTCTCAGGCAC+AGG | + | tig0027935:26698-26717 | Msa1436410:CDS | 45.0% | |
| GGCACAGGAATAAACATCCA+AGG | + | tig0027935:26713-26732 | Msa1436410:CDS | 45.0% | |
| CTCTGCTGCTATAGGAATCA+TGG | + | tig0027935:26769-26788 | Msa1436410:CDS | 45.0% | |
| ! | GTTGATAGGAACGTTGCAAC+GGG | + | tig0027935:27130-27149 | Msa1436410:CDS | 45.0% |
| TTGATAGGAACGTTGCAACG+GGG | + | tig0027935:27131-27150 | Msa1436410:CDS | 45.0% | |
| TAAAGGCTACTGTCGCGAAA+AGG | + | tig0027935:27161-27180 | Msa1436410:CDS | 45.0% | |
| AAAAGGTCGTTGCAAGGGAA+TGG | + | tig0027935:27178-27197 | Msa1436410:CDS | 45.0% | |
| TGCAAGGGAATGGAACTTCA+TGG | + | tig0027935:27188-27207 | Msa1436410:CDS | 45.0% | |
| GATGTCACGTGGTATACTCT+TGG | - | tig0027935:25717-25736 | Msa1436410:intergenic | 45.0% | |
| GTGCTATCTGAATTGCCTGT+TGG | - | tig0027935:25753-25772 | Msa1436410:intergenic | 45.0% | |
| !! | ATGGAAGGCATCAGTAACCT+TGG | + | tig0027935:25831-25850 | Msa1436410:CDS | 45.0% |
| GAAAGGAATTTCTCAGGCAC+AGG | + | tig0027935:26698-26717 | Msa1436410:CDS | 45.0% | |
| GGCACAGGAATAAACATCCA+AGG | + | tig0027935:26713-26732 | Msa1436410:CDS | 45.0% | |
| CTCTGCTGCTATAGGAATCA+TGG | + | tig0027935:26769-26788 | Msa1436410:CDS | 45.0% | |
| ! | GTTGATAGGAACGTTGCAAC+GGG | + | tig0027935:27130-27149 | Msa1436410:CDS | 45.0% |
| TTGATAGGAACGTTGCAACG+GGG | + | tig0027935:27131-27150 | Msa1436410:CDS | 45.0% | |
| TAAAGGCTACTGTCGCGAAA+AGG | + | tig0027935:27161-27180 | Msa1436410:CDS | 45.0% | |
| AAAAGGTCGTTGCAAGGGAA+TGG | + | tig0027935:27178-27197 | Msa1436410:CDS | 45.0% | |
| TGCAAGGGAATGGAACTTCA+TGG | + | tig0027935:27188-27207 | Msa1436410:CDS | 45.0% | |
| CTGCACCATATGATGTCACG+TGG | - | tig0027935:25728-25747 | Msa1436410:intergenic | 50.0% | |
| TCATATGGTGCAGACCCAAC+AGG | + | tig0027935:25735-25754 | Msa1436410:CDS | 50.0% | |
| ATATCCTTCGCTTGGACCGT+TGG | - | tig0027935:25808-25827 | Msa1436410:intergenic | 50.0% | |
| !! | GAAGGCATCAGTAACCTTGG+AGG | + | tig0027935:25834-25853 | Msa1436410:CDS | 50.0% |
| AAGTTACCGGTAACCAGCGT+TGG | + | tig0027935:25906-25925 | Msa1436410:CDS | 50.0% | |
| AGTTACCGGTAACCAGCGTT+GGG | + | tig0027935:25907-25926 | Msa1436410:CDS | 50.0% | |
| ! | ATGTTCCCAACGCTGGTTAC+CGG | - | tig0027935:25915-25934 | Msa1436410:intergenic | 50.0% |
| ! | AACCAGCGTTGGGAACATCA+TGG | + | tig0027935:25917-25936 | Msa1436410:CDS | 50.0% |
| TACCATGATGTTCCCAACGC+TGG | - | tig0027935:25922-25941 | Msa1436410:intergenic | 50.0% | |
| CCTTTCGTGTTTATCGCCTC+CGG | - | tig0027935:26684-26703 | Msa1436410:intergenic | 50.0% | |
| AATAAGGCCACTGGATTCGG+CGG | + | tig0027935:26833-26852 | Msa1436410:CDS | 50.0% | |
| TCGCGAAAAGGTCGTTGCAA+GGG | + | tig0027935:27173-27192 | Msa1436410:CDS | 50.0% | |
| !! | CGCTGCGAATGTTTTTGTCG+CGG | + | tig0027935:27357-27376 | Msa1436410:CDS | 50.0% |
| !! | TGCGAATGTTTTTGTCGCGG+TGG | + | tig0027935:27360-27379 | Msa1436410:CDS | 50.0% |
| CTGCACCATATGATGTCACG+TGG | - | tig0027935:25728-25747 | Msa1436410:intergenic | 50.0% | |
| TCATATGGTGCAGACCCAAC+AGG | + | tig0027935:25735-25754 | Msa1436410:CDS | 50.0% | |
| ATATCCTTCGCTTGGACCGT+TGG | - | tig0027935:25808-25827 | Msa1436410:intergenic | 50.0% | |
| !! | GAAGGCATCAGTAACCTTGG+AGG | + | tig0027935:25834-25853 | Msa1436410:CDS | 50.0% |
| AAGTTACCGGTAACCAGCGT+TGG | + | tig0027935:25906-25925 | Msa1436410:CDS | 50.0% | |
| AGTTACCGGTAACCAGCGTT+GGG | + | tig0027935:25907-25926 | Msa1436410:CDS | 50.0% | |
| ! | ATGTTCCCAACGCTGGTTAC+CGG | - | tig0027935:25915-25934 | Msa1436410:intergenic | 50.0% |
| ! | AACCAGCGTTGGGAACATCA+TGG | + | tig0027935:25917-25936 | Msa1436410:CDS | 50.0% |
| TACCATGATGTTCCCAACGC+TGG | - | tig0027935:25922-25941 | Msa1436410:intergenic | 50.0% | |
| CCTTTCGTGTTTATCGCCTC+CGG | - | tig0027935:26684-26703 | Msa1436410:intergenic | 50.0% | |
| AATAAGGCCACTGGATTCGG+CGG | + | tig0027935:26833-26852 | Msa1436410:CDS | 50.0% | |
| TCGCGAAAAGGTCGTTGCAA+GGG | + | tig0027935:27173-27192 | Msa1436410:CDS | 50.0% | |
| !! | CGCTGCGAATGTTTTTGTCG+CGG | + | tig0027935:27357-27376 | Msa1436410:CDS | 50.0% |
| !! | TGCGAATGTTTTTGTCGCGG+TGG | + | tig0027935:27360-27379 | Msa1436410:CDS | 50.0% |
| GCTGGCTGAGAAGAAGGAGA+AGG | - | tig0027935:25552-25571 | Msa1436410:intergenic | 55.0% | |
| TCCTTCTTCTCAGCCAGCTG+AGG | + | tig0027935:25554-25573 | Msa1436410:CDS | 55.0% | |
| ACCTCAGCTGGCTGAGAAGA+AGG | - | tig0027935:25558-25577 | Msa1436410:intergenic | 55.0% | |
| GCCATAGCAGATGCAGCCAA+CGG | + | tig0027935:25789-25808 | Msa1436410:CDS | 55.0% | |
| ! | ACCGTTGGCTGCATCTGCTA+TGG | - | tig0027935:25793-25812 | Msa1436410:intergenic | 55.0% |
| CTTGGCCAACACATAACCGC+CGG | + | tig0027935:26662-26681 | Msa1436410:CDS | 55.0% | |
| TTCGTGTTTATCGCCTCCGG+CGG | - | tig0027935:26681-26700 | Msa1436410:intergenic | 55.0% | |
| CCGGAGGCGATAAACACGAA+AGG | + | tig0027935:26681-26700 | Msa1436410:CDS | 55.0% | |
| GTCGCGAAAAGGTCGTTGCA+AGG | + | tig0027935:27172-27191 | Msa1436410:CDS | 55.0% | |
| GCTGGCTGAGAAGAAGGAGA+AGG | - | tig0027935:25552-25571 | Msa1436410:intergenic | 55.0% | |
| TCCTTCTTCTCAGCCAGCTG+AGG | + | tig0027935:25554-25573 | Msa1436410:CDS | 55.0% | |
| ACCTCAGCTGGCTGAGAAGA+AGG | - | tig0027935:25558-25577 | Msa1436410:intergenic | 55.0% | |
| GCCATAGCAGATGCAGCCAA+CGG | + | tig0027935:25789-25808 | Msa1436410:CDS | 55.0% | |
| ! | ACCGTTGGCTGCATCTGCTA+TGG | - | tig0027935:25793-25812 | Msa1436410:intergenic | 55.0% |
| CTTGGCCAACACATAACCGC+CGG | + | tig0027935:26662-26681 | Msa1436410:CDS | 55.0% | |
| TTCGTGTTTATCGCCTCCGG+CGG | - | tig0027935:26681-26700 | Msa1436410:intergenic | 55.0% | |
| CCGGAGGCGATAAACACGAA+AGG | + | tig0027935:26681-26700 | Msa1436410:CDS | 55.0% | |
| GTCGCGAAAAGGTCGTTGCA+AGG | + | tig0027935:27172-27191 | Msa1436410:CDS | 55.0% | |
| ! | CGGCGGTTATGTGTTGGCCA+AGG | - | tig0027935:26664-26683 | Msa1436410:intergenic | 60.0% |
| ! | CGGCGGTTATGTGTTGGCCA+AGG | - | tig0027935:26664-26683 | Msa1436410:intergenic | 60.0% |
| GCAGCCAACGGTCCAAGCGA+AGG | + | tig0027935:25801-25820 | Msa1436410:CDS | 65.0% | |
| GGCCAACACATAACCGCCGG+AGG | + | tig0027935:26665-26684 | Msa1436410:CDS | 65.0% | |
| CGCCTCCGGCGGTTATGTGT+TGG | - | tig0027935:26670-26689 | Msa1436410:intergenic | 65.0% | |
| GCCACTGGATTCGGCGGTAC+CGG | + | tig0027935:26839-26858 | Msa1436410:CDS | 65.0% | |
| TCCGGTACCGCCGAATCCAG+TGG | - | tig0027935:26843-26862 | Msa1436410:intergenic | 65.0% | |
| GCAGCCAACGGTCCAAGCGA+AGG | + | tig0027935:25801-25820 | Msa1436410:CDS | 65.0% | |
| GGCCAACACATAACCGCCGG+AGG | + | tig0027935:26665-26684 | Msa1436410:CDS | 65.0% | |
| CGCCTCCGGCGGTTATGTGT+TGG | - | tig0027935:26670-26689 | Msa1436410:intergenic | 65.0% | |
| GCCACTGGATTCGGCGGTAC+CGG | + | tig0027935:26839-26858 | Msa1436410:CDS | 65.0% | |
| TCCGGTACCGCCGAATCCAG+TGG | - | tig0027935:26843-26862 | Msa1436410:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027935 | gene | 25348 | 27402 | 25348 | ID=Msa1436410;Name=Msa1436410 |
| tig0027935 | mRNA | 25348 | 27402 | 25348 | ID=Msa1436410-mRNA-1;Parent=Msa1436410;Name=Msa1436410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.33|1|1|1|3|0|497 |
| tig0027935 | exon | 25348 | 25575 | 25348 | ID=Msa1436410-mRNA-1:exon:10213;Parent=Msa1436410-mRNA-1 |
| tig0027935 | exon | 25702 | 25938 | 25702 | ID=Msa1436410-mRNA-1:exon:10214;Parent=Msa1436410-mRNA-1 |
| tig0027935 | exon | 26374 | 27402 | 26374 | ID=Msa1436410-mRNA-1:exon:10215;Parent=Msa1436410-mRNA-1 |
| tig0027935 | CDS | 25348 | 25575 | 25348 | ID=Msa1436410-mRNA-1:cds;Parent=Msa1436410-mRNA-1 |
| tig0027935 | CDS | 25702 | 25938 | 25702 | ID=Msa1436410-mRNA-1:cds;Parent=Msa1436410-mRNA-1 |
| tig0027935 | CDS | 26374 | 27402 | 26374 | ID=Msa1436410-mRNA-1:cds;Parent=Msa1436410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
