AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0644980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644980 MtrunA17_Chr4g0032401 96.418 335 7 3 9 341 1 332 0.0 659
Msa0644980 MtrunA17_Chr2g0328771 58.857 350 90 13 9 336 1 318 2.27e-113 332
Msa0644980 MtrunA17_Chr3g0088461 84.000 125 15 1 9 128 3 127 1.88e-72 228
Msa0644980 MtrunA17_Chr1g0193371 80.374 107 21 0 22 128 11 117 5.48e-59 194
Msa0644980 MtrunA17_Chr2g0330041 55.747 174 57 3 19 179 8 174 6.69e-58 192
Msa0644980 MtrunA17_Chr7g0270891 77.570 107 24 0 22 128 11 117 7.52e-57 188
Msa0644980 MtrunA17_Chr3g0117091 79.245 106 22 0 22 127 11 116 9.05e-57 187
Msa0644980 MtrunA17_Chr4g0058631 78.302 106 23 0 22 127 11 116 1.26e-56 187
Msa0644980 MtrunA17_Chr1g0211161 77.358 106 24 0 22 127 12 117 3.52e-56 182
Msa0644980 MtrunA17_Chr1g0193801 75.701 107 26 0 22 128 11 117 9.71e-56 186
Msa0644980 MtrunA17_Chr8g0342521 63.504 137 43 2 19 155 8 137 3.15e-55 184
Msa0644980 MtrunA17_Chr7g0271241 82.828 99 17 0 22 120 11 109 4.83e-55 184
Msa0644980 MtrunA17_Chr8g0342541 71.560 109 31 0 19 127 8 116 2.12e-54 181
Msa0644980 MtrunA17_Chr8g0387421 68.182 110 35 0 19 128 8 117 4.13e-53 177
Msa0644980 MtrunA17_Chr1g0203441 71.818 110 31 0 18 127 8 117 5.49e-52 173
Msa0644980 MtrunA17_Chr5g0397231 56.579 152 58 3 19 170 8 151 1.02e-51 174
Msa0644980 MtrunA17_Chr8g0342481 69.027 113 34 1 16 127 5 117 1.55e-50 173
Msa0644980 MtrunA17_Chr2g0309911 50.000 182 80 5 22 196 10 187 1.70e-50 170
Msa0644980 MtrunA17_Chr6g0470971 58.955 134 52 1 13 143 4 137 1.18e-49 167
Msa0644980 MtrunA17_Chr4g0042671 54.861 144 58 1 23 166 12 148 1.57e-49 170
Msa0644980 MtrunA17_Chr2g0281071 66.667 111 37 0 20 130 10 120 3.57e-49 168
Msa0644980 MtrunA17_Chr3g0131121 69.903 103 31 0 25 127 14 116 1.26e-48 165
Msa0644980 MtrunA17_Chr4g0048511 64.602 113 40 0 18 130 8 120 1.89e-48 166
Msa0644980 MtrunA17_Chr5g0435101 52.632 152 56 3 9 160 1 136 2.40e-48 162
Msa0644980 MtrunA17_Chr4g0037141 48.824 170 73 3 25 192 14 171 2.80e-48 164
Msa0644980 MtrunA17_Chr2g0323411 60.000 130 45 1 21 150 10 132 6.64e-48 164
Msa0644980 MtrunA17_Chr8g0385321 66.990 103 34 0 25 127 14 116 9.50e-48 163
Msa0644980 MtrunA17_Chr3g0115821 62.500 112 42 0 19 130 8 119 1.96e-47 163
Msa0644980 MtrunA17_Chr5g0434571 57.895 133 49 1 23 148 48 180 7.31e-47 162
Msa0644980 MtrunA17_Chr7g0228891 58.140 129 51 1 23 148 12 140 7.79e-47 159
Msa0644980 MtrunA17_Chr2g0323351 64.286 112 40 0 23 134 12 123 8.06e-47 159
Msa0644980 MtrunA17_Chr3g0110351 66.667 108 36 0 23 130 12 119 8.23e-47 160
Msa0644980 MtrunA17_Chr7g0217741 64.815 108 38 0 23 130 12 119 8.34e-47 160
Msa0644980 MtrunA17_Chr7g0274581 42.857 203 95 5 23 225 12 193 1.94e-46 156
Msa0644980 MtrunA17_Chr1g0203411 57.895 114 48 0 23 136 12 125 3.15e-46 159
Msa0644980 MtrunA17_Chr5g0410961 55.814 129 50 1 23 151 12 133 8.51e-46 159
Msa0644980 MtrunA17_Chr4g0057031 63.889 108 39 0 23 130 12 119 1.14e-45 156
Msa0644980 MtrunA17_Chr4g0044421 48.538 171 73 4 9 169 1 166 1.88e-45 153
Msa0644980 MtrunA17_Chr4g0070611 45.732 164 89 0 23 186 12 175 2.10e-45 157
Msa0644980 MtrunA17_Chr4g0039971 55.385 130 51 1 21 150 11 133 4.17e-45 157
Msa0644980 MtrunA17_Chr5g0395281 52.817 142 56 2 9 150 2 132 6.36e-45 155
Msa0644980 MtrunA17_Chr7g0228231 44.776 201 95 5 9 201 1 193 6.96e-45 152
Msa0644980 MtrunA17_Chr8g0349261 61.062 113 43 1 19 130 9 121 8.98e-45 155
Msa0644980 MtrunA17_Chr1g0187761 60.345 116 46 0 23 138 12 127 9.21e-45 154
Msa0644980 MtrunA17_Chr6g0452271 57.143 112 48 0 19 130 8 119 4.09e-44 154
Msa0644980 MtrunA17_Chr4g0070641 49.635 137 69 0 23 159 12 148 1.15e-43 148
Msa0644980 MtrunA17_Chr6g0453471 41.827 208 96 3 23 205 12 219 1.21e-43 154
Msa0644980 MtrunA17_Chr4g0068061 57.627 118 46 1 23 136 12 129 2.83e-43 152
Msa0644980 MtrunA17_Chr1g0167661 62.162 111 42 0 23 133 12 122 3.38e-43 149
Msa0644980 MtrunA17_Chr3g0103281 61.111 108 42 0 23 130 12 119 3.64e-43 151
Msa0644980 MtrunA17_Chr1g0209661 52.419 124 59 0 7 130 11 134 6.26e-43 150
Msa0644980 MtrunA17_Chr7g0275911 59.813 107 43 0 23 129 12 118 7.99e-43 149
Msa0644980 MtrunA17_Chr4g0022931 57.018 114 49 0 16 129 6 119 1.34e-42 149
Msa0644980 MtrunA17_Chr8g0343831 61.111 108 42 0 25 132 10 117 1.77e-42 147
Msa0644980 MtrunA17_Chr1g0167691 62.857 105 39 0 23 127 12 116 2.25e-42 147
Msa0644980 MtrunA17_Chr3g0121241 59.813 107 43 0 23 129 42 148 2.82e-42 149
Msa0644980 MtrunA17_Chr6g0450101 56.757 111 48 0 20 130 11 121 4.13e-42 145
Msa0644980 MtrunA17_Chr7g0261281 61.905 105 40 0 23 127 12 116 8.88e-42 147
Msa0644980 MtrunA17_Chr4g0022901 60.377 106 42 0 21 126 11 116 1.52e-41 145
Msa0644980 MtrunA17_Chr4g0055981 52.381 126 60 0 17 142 49 174 3.14e-41 144
Msa0644980 MtrunA17_Chr1g0168661 62.264 106 40 0 24 129 22 127 3.45e-41 144
Msa0644980 MtrunA17_Chr5g0417821 61.111 108 42 0 23 130 7 114 6.28e-41 145
Msa0644980 MtrunA17_Chr8g0346561 59.434 106 43 0 23 128 12 117 6.59e-41 145
Msa0644980 MtrunA17_Chr1g0194951 59.633 109 44 0 23 131 12 120 1.63e-40 145
Msa0644980 MtrunA17_Chr4g0022911 56.140 114 49 1 21 133 11 124 2.15e-40 143
Msa0644980 MtrunA17_Chr2g0311221 61.165 103 40 0 19 121 10 112 3.42e-40 144
Msa0644980 MtrunA17_Chr4g0060721 52.756 127 59 1 23 148 13 139 4.71e-40 144
Msa0644980 MtrunA17_Chr7g0254411 54.701 117 53 0 23 139 12 128 4.89e-40 144
Msa0644980 MtrunA17_Chr3g0092401 52.893 121 57 0 23 143 13 133 8.94e-40 142
Msa0644980 MtrunA17_Chr7g0217221 59.434 106 43 0 23 128 12 117 1.05e-39 141
Msa0644980 MtrunA17_Chr3g0099131 57.547 106 45 0 23 128 41 146 4.53e-39 145
Msa0644980 MtrunA17_Chr1g0186061 59.259 108 44 0 22 129 19 126 5.44e-39 139
Msa0644980 MtrunA17_Chr1g0151941 51.818 110 52 1 19 127 8 117 5.54e-39 139
Msa0644980 MtrunA17_Chr1g0152011 40.556 180 82 4 23 184 12 184 6.03e-39 141
Msa0644980 MtrunA17_Chr8g0354661 57.692 104 44 0 23 126 37 140 1.55e-38 144
Msa0644980 MtrunA17_Chr1g0154031 58.654 104 43 0 23 126 76 179 1.75e-38 141
Msa0644980 MtrunA17_Chr6g0453211 61.616 99 38 0 23 121 12 110 1.88e-38 139
Msa0644980 MtrunA17_Chr1g0194301 50.833 120 59 0 15 134 25 144 2.30e-38 137
Msa0644980 MtrunA17_Chr1g0194291 51.667 120 58 0 15 134 13 132 2.46e-38 137
Msa0644980 MtrunA17_Chr5g0400821 40.000 185 101 3 19 193 8 192 2.51e-38 138
Msa0644980 MtrunA17_Chr1g0180391 49.194 124 63 0 5 128 1 124 3.70e-38 135
Msa0644980 MtrunA17_Chr3g0080861 55.660 106 47 0 23 128 37 142 7.50e-38 141
Msa0644980 MtrunA17_Chr4g0028311 52.991 117 54 1 19 134 8 124 1.93e-37 136
Msa0644980 MtrunA17_Chr7g0247131 60.204 98 37 1 55 150 10 107 6.07e-37 134
Msa0644980 MtrunA17_Chr4g0022881 56.863 102 44 0 24 125 13 114 9.57e-37 132
Msa0644980 MtrunA17_Chr4g0022891 55.882 102 45 0 23 124 12 113 1.49e-36 132
Msa0644980 MtrunA17_Chr8g0342531 67.073 82 27 0 19 100 8 89 2.00e-36 129
Msa0644980 MtrunA17_Chr8g0342511 70.000 80 24 0 19 98 8 87 2.10e-36 127
Msa0644980 MtrunA17_Chr2g0327821 45.985 137 61 1 22 145 5 141 3.10e-36 131
Msa0644980 MtrunA17_Chr2g0322521 57.547 106 45 0 23 128 29 134 3.39e-36 135
Msa0644980 MtrunA17_Chr3g0135311 52.727 110 51 1 19 127 8 117 3.42e-36 134
Msa0644980 MtrunA17_Chr2g0293911 56.481 108 47 0 23 130 24 131 4.94e-36 133
Msa0644980 MtrunA17_Chr1g0192411 51.754 114 55 0 15 128 4 117 5.86e-36 134
Msa0644980 MtrunA17_Chr7g0269831 56.522 115 50 0 23 137 12 126 1.12e-35 132
Msa0644980 MtrunA17_Chr7g0264641 52.294 109 51 1 23 130 12 120 1.27e-35 130
Msa0644980 MtrunA17_Chr4g0068921 49.219 128 65 0 3 130 4 131 1.70e-35 127
Msa0644980 MtrunA17_Chr7g0240821 49.219 128 62 2 28 153 6 132 3.87e-35 128
Msa0644980 MtrunA17_Chr2g0327351 58.000 100 41 1 23 121 12 111 4.25e-35 130
Msa0644980 MtrunA17_Chr4g0030881 49.167 120 54 1 24 136 8 127 9.45e-35 127
Msa0644980 MtrunA17_Chr5g0434911 54.286 105 48 0 23 127 21 125 1.63e-34 127
Msa0644980 MtrunA17_Chr5g0434831 54.286 105 48 0 23 127 7 111 1.81e-34 125
Msa0644980 MtrunA17_Chr5g0434931 52.381 105 50 0 23 127 35 139 2.59e-34 127
Msa0644980 MtrunA17_Chr8g0342461 66.279 86 28 1 16 100 5 90 3.07e-34 122
Msa0644980 MtrunA17_Chr8g0342471 66.279 86 28 1 16 100 5 90 4.73e-34 122
Msa0644980 MtrunA17_Chr4g0054391 55.340 103 45 1 19 120 8 110 8.85e-34 126
Msa0644980 MtrunA17_Chr8g0360111 52.830 106 50 0 18 123 20 125 8.52e-33 122
Msa0644980 MtrunA17_Chr4g0042611 62.821 78 29 0 22 99 11 88 9.11e-33 117
Msa0644980 MtrunA17_Chr5g0440781 41.667 144 77 3 24 166 13 150 1.21e-32 120
Msa0644980 MtrunA17_Chr4g0072751 53.922 102 46 1 21 121 10 111 1.28e-32 124
Msa0644980 MtrunA17_Chr6g0487491 48.413 126 56 2 19 135 8 133 1.85e-32 122
Msa0644980 MtrunA17_Chr7g0220341 51.351 111 52 1 19 127 21 131 2.10e-32 122
Msa0644980 MtrunA17_Chr5g0434841 46.341 123 63 1 5 127 5 124 2.64e-32 122
Msa0644980 MtrunA17_Chr5g0441141 47.826 115 58 2 24 137 13 126 3.92e-32 121
Msa0644980 MtrunA17_Chr5g0440761 47.826 115 58 2 24 137 13 126 3.94e-32 121
Msa0644980 MtrunA17_Chr7g0228991 51.429 105 51 0 23 127 29 133 1.01e-31 120
Msa0644980 MtrunA17_Chr8g0334881 41.447 152 76 3 18 157 5 155 6.19e-31 119
Msa0644980 MtrunA17_Chr5g0441131 50.000 106 52 1 24 128 10 115 4.07e-30 113
Msa0644980 MtrunA17_Chr5g0395221 62.500 80 30 0 20 99 9 88 1.91e-29 108
Msa0644980 MtrunA17_Chr2g0323321 60.000 85 34 0 19 103 7 91 2.23e-29 109
Msa0644980 MtrunA17_Chr4g0013361 45.833 120 64 1 23 141 10 129 4.28e-29 113
Msa0644980 MtrunA17_Chr4g0053431 39.205 176 88 5 25 188 5 173 6.40e-29 112
Msa0644980 MtrunA17_Chr3g0099141 52.941 85 40 0 21 105 38 122 6.53e-28 106
Msa0644980 MtrunA17_Chr6g0454921 48.113 106 54 1 25 130 15 119 1.18e-27 107
Msa0644980 MtrunA17_Chr5g0401731 48.113 106 54 1 25 130 15 119 1.34e-27 110
Msa0644980 MtrunA17_Chr5g0429661 40.288 139 79 2 23 158 120 257 1.88e-27 110
Msa0644980 MtrunA17_Chr2g0294811 59.740 77 31 0 23 99 12 88 2.66e-27 103
Msa0644980 MtrunA17_Chr4g0008551 50.980 102 49 1 25 126 38 138 6.39e-27 108
Msa0644980 MtrunA17_Chr3g0133601 47.863 117 60 1 25 141 37 152 6.48e-26 103
Msa0644980 MtrunA17_Chr7g0238631 46.296 108 57 1 20 127 108 214 1.26e-25 107
Msa0644980 MtrunA17_Chr3g0117511 42.742 124 68 2 3 126 163 283 1.67e-25 106
Msa0644980 MtrunA17_Chr3g0139671 46.296 108 57 1 20 127 80 186 1.69e-25 107
Msa0644980 MtrunA17_Chr5g0434901 60.294 68 27 0 57 124 7 74 4.07e-24 95.5
Msa0644980 MtrunA17_Chr7g0229101 60.000 70 28 0 55 124 4 73 5.21e-24 97.8
Msa0644980 MtrunA17_Chr6g0460661 40.171 117 67 2 20 135 11 125 5.63e-24 96.3
Msa0644980 MtrunA17_Chr5g0437321 47.664 107 55 1 17 123 11 116 1.33e-23 98.6
Msa0644980 MtrunA17_Chr6g0480581 45.545 101 54 1 25 125 4 103 1.34e-23 97.4
Msa0644980 MtrunA17_Chr4g0058991 41.818 110 63 1 17 126 201 309 1.34e-23 100
Msa0644980 MtrunA17_Chr7g0229131 57.746 71 30 0 55 125 4 74 1.40e-23 95.5
Msa0644980 MtrunA17_Chr5g0425591 51.220 82 39 1 24 104 10 91 1.65e-23 92.8
Msa0644980 MtrunA17_Chr6g0460671 42.735 117 65 2 20 135 93 208 2.05e-23 99.4
Msa0644980 MtrunA17_Chr4g0042501 39.286 140 81 3 6 144 87 223 2.29e-23 100
Msa0644980 MtrunA17_Chr5g0417621 39.394 132 73 3 5 131 110 239 2.30e-23 100
Msa0644980 MtrunA17_Chr1g0157731 43.519 108 60 1 20 127 86 192 4.28e-23 100
Msa0644980 MtrunA17_Chr6g0453751 46.392 97 43 2 17 104 14 110 2.64e-21 88.2
Msa0644980 MtrunA17_Chr1g0177901 40.000 130 68 3 35 164 7 126 4.82e-21 89.7
Msa0644980 MtrunA17_Chr3g0093811 47.674 86 42 1 48 130 4 89 1.76e-20 89.7
Msa0644980 MtrunA17_Chr7g0228531 42.202 109 60 3 25 133 220 325 3.02e-20 91.3
Msa0644980 MtrunA17_Chr5g0397841 44.118 102 56 1 19 120 104 204 4.69e-20 90.9
Msa0644980 MtrunA17_Chr3g0125801 42.593 108 59 2 25 131 16 121 4.91e-20 89.0
Msa0644980 MtrunA17_Chr7g0228401 47.191 89 44 2 44 132 298 383 2.14e-19 89.0
Msa0644980 MtrunA17_Chr7g0254261 42.157 102 58 1 25 126 89 189 1.15e-18 85.9
Msa0644980 MtrunA17_Chr7g0233061 38.261 115 68 3 25 139 180 291 5.82e-18 84.0
Msa0644980 MtrunA17_Chr7g0228481 39.450 109 63 3 25 133 220 325 6.99e-17 81.3
Msa0644980 MtrunA17_Chr1g0193901 50.000 92 44 2 15 104 3 94 1.72e-16 74.7
Msa0644980 MtrunA17_Chr1g0193891 50.000 92 44 2 15 104 3 94 1.72e-16 74.7
Msa0644980 MtrunA17_Chr1g0193871 50.000 92 44 2 15 104 3 94 1.72e-16 74.7
Msa0644980 MtrunA17_Chr1g0193881 50.000 92 44 2 15 104 3 94 1.72e-16 74.7
Msa0644980 MtrunA17_Chr7g0238651 39.362 94 55 1 28 119 10 103 7.29e-16 77.8
Msa0644980 MtrunA17_Chr5g0416341 36.634 101 63 1 28 128 29 128 1.12e-15 77.8
Msa0644980 MtrunA17_Chr8g0362231 36.283 113 70 2 28 139 25 136 1.82e-15 77.0
Msa0644980 MtrunA17_Chr5g0434871 60.465 43 17 0 85 127 2 44 1.37e-13 65.1
Msa0644980 MtrunA17_Chr3g0104491 38.272 81 45 2 64 140 1 80 1.68e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644980 AT3G08500.1 46.027 365 144 13 1 339 3 340 4.09e-75 235
Msa0644980 AT5G12870.1 82.540 126 19 1 9 131 1 126 5.05e-71 223
Msa0644980 AT1G09540.1 79.439 107 22 0 22 128 11 117 9.34e-59 194
Msa0644980 AT5G26660.1 79.439 107 22 0 22 128 11 117 8.77e-58 191
Msa0644980 AT1G57560.1 78.302 106 23 0 22 127 11 116 1.39e-57 189
Msa0644980 AT1G57560.2 78.302 106 23 0 22 127 11 116 1.40e-57 188
Msa0644980 AT3G13890.2 75.229 109 27 0 19 127 8 116 2.01e-57 190
Msa0644980 AT4G01680.3 77.570 107 24 0 22 128 11 117 2.93e-57 186
Msa0644980 AT4G01680.1 77.570 107 24 0 22 128 11 117 2.32e-56 187
Msa0644980 AT3G13890.1 69.492 118 27 1 19 127 8 125 1.94e-54 182
Msa0644980 AT4G01680.2 69.748 119 24 1 22 128 11 129 7.38e-53 178
Msa0644980 AT1G63910.1 68.182 110 35 0 19 128 8 117 8.34e-53 178
Msa0644980 AT3G12720.1 67.925 106 34 0 22 127 21 126 5.23e-50 169
Msa0644980 AT4G05100.1 68.519 108 34 0 23 130 13 120 1.07e-49 169
Msa0644980 AT4G21440.1 68.519 108 34 0 23 130 12 119 4.31e-49 168
Msa0644980 AT2G16720.1 51.829 164 66 2 25 186 14 166 7.34e-49 165
Msa0644980 AT5G54230.1 67.593 108 35 0 23 130 12 119 1.61e-48 166
Msa0644980 AT1G22640.1 61.864 118 43 1 21 138 10 125 3.79e-48 163
Msa0644980 AT3G02940.2 56.061 132 51 1 19 150 8 132 6.37e-48 164
Msa0644980 AT5G10280.1 63.393 112 41 0 19 130 8 119 1.00e-47 164
Msa0644980 AT4G12350.1 63.717 113 41 0 23 135 12 124 1.37e-47 162
Msa0644980 AT3G02940.1 56.061 132 51 1 19 150 8 132 1.37e-47 163
Msa0644980 AT3G02940.3 56.061 132 51 1 19 150 8 132 1.37e-47 163
Msa0644980 AT4G09460.1 66.990 103 34 0 25 127 14 116 1.66e-47 160
Msa0644980 AT4G34990.1 67.961 103 33 0 25 127 14 116 1.92e-47 162
Msa0644980 AT3G01140.2 65.741 108 37 0 23 130 12 119 3.10e-47 163
Msa0644980 AT4G38620.1 66.667 105 35 0 25 129 14 118 5.06e-47 160
Msa0644980 AT5G65230.1 64.815 108 38 0 23 130 12 119 6.25e-47 161
Msa0644980 AT4G28110.1 66.667 105 35 0 23 127 12 116 7.19e-47 160
Msa0644980 AT3G01140.1 63.393 112 41 0 19 130 51 162 7.50e-47 163
Msa0644980 AT5G15310.4 64.815 108 38 0 23 130 12 119 9.04e-47 159
Msa0644980 AT5G15310.1 64.815 108 38 0 23 130 12 119 1.23e-46 161
Msa0644980 AT5G15310.2 64.815 108 38 0 23 130 12 119 1.24e-46 160
Msa0644980 AT5G61420.2 46.988 166 87 1 23 188 12 176 1.64e-46 162
Msa0644980 AT3G48920.1 64.815 108 38 0 18 125 13 120 2.86e-46 158
Msa0644980 AT5G60890.1 53.125 128 56 1 23 146 12 139 3.06e-46 159
Msa0644980 AT2G31180.1 53.147 143 64 2 23 164 12 152 4.11e-46 157
Msa0644980 AT5G14340.1 56.923 130 53 1 23 149 24 153 6.40e-46 157
Msa0644980 AT5G14750.1 57.500 120 50 1 9 127 1 120 9.08e-46 155
Msa0644980 AT1G66230.1 65.741 108 37 0 23 130 12 119 1.05e-45 157
Msa0644980 AT4G25560.1 63.025 119 43 1 14 131 1 119 1.41e-45 157
Msa0644980 AT1G34670.1 62.963 108 40 0 23 130 12 119 2.53e-45 159
Msa0644980 AT3G27920.1 48.649 148 70 1 18 165 9 150 2.79e-45 154
Msa0644980 AT3G61250.1 62.037 108 41 0 23 130 12 119 3.12e-45 157
Msa0644980 AT5G16600.1 63.889 108 39 0 23 130 12 119 4.06e-45 157
Msa0644980 AT3G23250.1 42.286 175 99 1 23 197 12 184 4.15e-45 156
Msa0644980 AT5G16770.4 54.688 128 51 1 23 150 12 132 5.09e-45 157
Msa0644980 AT5G16770.3 54.688 128 51 1 23 150 12 132 5.09e-45 157
Msa0644980 AT1G35515.1 60.550 109 43 0 21 129 10 118 7.35e-45 153
Msa0644980 AT1G74430.1 64.762 105 37 0 23 127 12 116 8.75e-45 154
Msa0644980 AT3G27810.1 45.087 173 75 3 21 187 18 176 9.68e-45 153
Msa0644980 AT5G16770.1 54.688 128 51 1 23 150 12 132 9.89e-45 156
Msa0644980 AT5G16770.2 54.688 128 51 1 23 150 12 132 9.89e-45 156
Msa0644980 AT1G18570.1 64.762 105 37 0 23 127 13 117 1.07e-44 157
Msa0644980 AT5G52600.1 43.503 177 90 2 13 181 2 176 1.39e-44 152
Msa0644980 AT4G22680.1 62.963 108 40 0 23 130 12 119 1.75e-44 154
Msa0644980 AT1G06180.1 66.667 105 35 0 23 127 12 116 2.12e-44 153
Msa0644980 AT5G52260.1 69.903 103 31 0 24 126 13 115 2.95e-44 153
Msa0644980 AT5G40330.1 48.951 143 68 1 24 166 13 150 2.97e-44 152
Msa0644980 AT3G01530.1 56.452 124 53 1 11 133 12 135 1.21e-43 149
Msa0644980 AT2G47460.1 61.111 108 42 0 23 130 12 119 2.91e-43 153
Msa0644980 AT5G56110.1 60.550 109 43 0 23 131 12 120 4.28e-43 152
Msa0644980 AT5G07690.1 54.331 127 56 1 23 149 12 136 7.07e-43 151
Msa0644980 AT5G40350.1 57.407 108 46 0 20 127 14 121 7.25e-43 148
Msa0644980 AT5G07700.1 60.952 105 41 0 23 127 12 116 8.23e-43 151
Msa0644980 AT5G07700.2 60.952 105 41 0 23 127 12 116 8.23e-43 151
Msa0644980 AT1G56160.1 54.135 133 61 0 22 154 13 145 9.48e-43 150
Msa0644980 AT4G17785.2 60.185 108 43 0 23 130 13 120 1.14e-42 151
Msa0644980 AT1G79180.1 56.000 125 55 0 19 143 10 134 1.24e-42 149
Msa0644980 AT4G17785.1 60.185 108 43 0 23 130 13 120 1.32e-42 151
Msa0644980 AT1G16490.1 45.614 171 78 2 19 177 10 177 2.57e-42 148
Msa0644980 AT3G62610.1 56.198 121 48 1 23 138 12 132 6.31e-42 149
Msa0644980 AT1G68320.1 36.000 275 158 9 20 285 16 281 1.53e-41 146
Msa0644980 AT5G62320.1 45.833 168 63 3 23 183 13 159 2.11e-41 145
Msa0644980 AT5G49330.1 61.905 105 40 0 23 127 12 116 4.04e-41 147
Msa0644980 AT5G35550.1 63.208 106 39 0 22 127 13 118 5.46e-41 144
Msa0644980 AT3G13540.1 57.143 105 45 0 23 127 23 127 7.08e-41 144
Msa0644980 AT3G12820.1 58.716 109 45 0 19 127 10 118 7.52e-41 143
Msa0644980 AT1G74080.1 60.952 105 41 0 23 127 12 116 1.15e-40 145
Msa0644980 AT3G47600.1 51.799 139 64 2 23 161 12 147 1.41e-40 145
Msa0644980 AT3G30210.1 62.037 108 41 0 24 131 28 135 2.37e-40 143
Msa0644980 AT1G18710.1 58.095 105 44 0 23 127 12 116 2.82e-40 142
Msa0644980 AT1G08810.1 59.048 105 43 0 23 127 12 116 6.43e-40 142
Msa0644980 AT3G24310.1 61.321 106 41 0 24 129 19 124 7.28e-40 142
Msa0644980 AT1G48000.1 44.805 154 77 2 22 172 31 179 1.48e-39 140
Msa0644980 AT5G62470.2 56.481 108 47 0 23 130 12 119 2.02e-39 142
Msa0644980 AT4G26930.1 42.857 168 92 1 23 190 19 182 2.08e-39 144
Msa0644980 AT1G74650.1 57.798 109 46 0 22 130 11 119 2.72e-39 142
Msa0644980 AT4G13480.1 57.658 111 47 0 24 134 7 117 2.92e-39 140
Msa0644980 AT5G55020.1 57.547 106 45 0 23 128 26 131 3.63e-39 145
Msa0644980 AT2G47190.1 49.600 125 63 0 18 142 15 139 4.84e-39 139
Msa0644980 AT2G26960.1 43.293 164 82 2 25 178 22 184 5.49e-39 143
Msa0644980 AT3G49690.1 59.259 108 43 1 23 129 12 119 6.08e-39 140
Msa0644980 AT5G26660.2 78.481 79 17 0 50 128 8 86 7.41e-39 140
Msa0644980 AT2G32460.1 56.604 106 46 0 23 128 18 123 8.29e-39 144
Msa0644980 AT5G06100.1 57.547 106 45 0 23 128 32 137 8.32e-39 143
Msa0644980 AT3G28470.1 59.223 103 42 0 19 121 8 110 8.62e-39 140
Msa0644980 AT2G32460.2 56.604 106 46 0 23 128 6 111 8.84e-39 144
Msa0644980 AT3G28910.1 54.464 112 51 0 23 134 12 123 1.55e-38 140
Msa0644980 AT5G65790.1 56.250 112 48 1 19 129 8 119 1.75e-38 140
Msa0644980 AT1G25340.1 48.387 124 64 0 7 130 2 125 1.79e-38 138
Msa0644980 AT5G06100.5 57.547 106 45 0 23 128 32 137 3.02e-38 143
Msa0644980 AT5G06100.2 57.547 106 45 0 23 128 32 137 3.02e-38 143
Msa0644980 AT5G06100.3 57.547 106 45 0 23 128 32 137 3.02e-38 143
Msa0644980 AT5G06100.4 57.547 106 45 0 23 128 32 137 3.02e-38 143
Msa0644980 AT3G11440.2 54.630 108 49 0 21 128 39 146 6.52e-38 141
Msa0644980 AT5G62470.1 56.481 108 46 1 23 130 12 118 1.19e-37 138
Msa0644980 AT3G11440.3 54.630 108 49 0 21 128 39 146 2.36e-37 140
Msa0644980 AT3G11440.4 54.630 108 49 0 21 128 39 146 2.36e-37 140
Msa0644980 AT3G11440.1 54.630 108 49 0 21 128 39 146 2.36e-37 140
Msa0644980 AT5G23000.1 55.556 108 47 1 21 127 10 117 5.55e-37 135
Msa0644980 AT3G06490.1 57.407 108 46 0 23 130 19 126 9.90e-37 135
Msa0644980 AT1G79180.2 44.937 158 54 1 19 143 10 167 1.00e-36 135
Msa0644980 AT5G57620.1 54.545 110 49 1 19 127 8 117 1.78e-36 134
Msa0644980 AT5G59780.3 52.212 113 54 0 24 136 9 121 8.35e-36 130
Msa0644980 AT3G46130.1 51.327 113 55 0 24 136 10 122 1.49e-35 130
Msa0644980 AT3G53200.1 54.128 109 50 0 18 126 4 112 6.66e-35 128
Msa0644980 AT2G36890.1 51.818 110 52 1 19 127 8 117 2.92e-34 127
Msa0644980 AT2G36890.2 51.818 110 52 1 19 127 49 158 4.77e-34 128
Msa0644980 AT5G49620.1 51.786 112 54 0 23 134 26 137 8.08e-34 127
Msa0644980 AT4G37780.1 52.830 106 49 1 23 127 12 117 9.33e-34 126
Msa0644980 AT1G25340.2 45.968 124 62 1 7 130 2 120 1.17e-33 125
Msa0644980 AT1G66370.1 50.909 110 54 0 17 126 2 111 3.13e-33 124
Msa0644980 AT1G25340.3 45.968 124 62 1 7 130 2 120 3.21e-33 125
Msa0644980 AT2G26950.1 45.378 119 64 1 25 143 18 135 3.62e-32 124
Msa0644980 AT5G35550.2 47.407 135 67 1 51 185 45 175 4.84e-32 121
Msa0644980 AT3G27810.2 44.928 138 56 3 56 187 4 127 1.20e-31 117
Msa0644980 AT3G47600.2 49.606 127 57 3 35 161 22 141 1.22e-31 121
Msa0644980 AT1G66380.1 48.819 127 57 1 23 141 8 134 4.24e-31 115
Msa0644980 AT3G60460.1 49.206 126 58 3 9 133 1 121 1.19e-30 118
Msa0644980 AT3G12820.2 72.464 69 19 0 59 127 2 70 2.76e-30 114
Msa0644980 AT5G49620.2 46.032 126 54 1 23 134 26 151 3.21e-30 117
Msa0644980 AT5G14750.3 68.116 69 22 0 59 127 18 86 4.49e-30 113
Msa0644980 AT5G40350.2 63.514 74 27 0 54 127 3 76 6.83e-30 112
Msa0644980 AT1G56650.1 54.808 104 47 0 23 126 8 111 9.93e-30 114
Msa0644980 AT1G66390.1 54.808 104 47 0 23 126 8 111 5.01e-29 112
Msa0644980 AT3G46130.3 57.317 82 35 0 55 136 9 90 7.68e-29 111
Msa0644980 AT5G59780.2 58.025 81 34 0 56 136 20 100 1.32e-28 110
Msa0644980 AT3G46130.4 58.025 81 34 0 56 136 20 100 1.65e-28 110
Msa0644980 AT3G53200.2 64.789 71 25 0 56 126 9 79 4.16e-27 106
Msa0644980 AT5G11050.1 28.899 218 143 3 25 240 105 312 1.14e-26 109
Msa0644980 AT3G50060.1 40.625 128 75 1 25 152 6 132 7.52e-26 105
Msa0644980 AT5G67300.1 42.063 126 63 2 25 150 6 121 9.99e-26 105
Msa0644980 AT3G55730.1 38.922 167 92 4 25 189 56 214 1.35e-25 106
Msa0644980 AT4G18770.1 40.426 141 80 3 21 160 213 350 1.63e-25 106
Msa0644980 AT5G40360.1 40.678 118 68 2 18 135 151 266 2.37e-25 105
Msa0644980 AT3G09230.1 43.284 134 71 2 16 145 46 178 3.23e-25 105
Msa0644980 AT4G37260.1 46.789 109 57 1 18 126 6 113 7.75e-25 103
Msa0644980 AT2G39880.1 49.107 112 55 2 15 126 41 150 8.88e-25 103
Msa0644980 AT1G69560.1 30.769 221 131 6 19 225 101 313 1.09e-24 102
Msa0644980 AT5G02320.3 42.623 122 67 2 20 139 62 182 1.24e-24 104
Msa0644980 AT5G02320.1 42.623 122 67 2 20 139 122 242 1.32e-24 104
Msa0644980 AT5G02320.2 42.623 122 67 2 20 139 122 242 1.32e-24 104
Msa0644980 AT3G27785.1 40.800 125 71 2 3 126 167 289 1.34e-24 103
Msa0644980 AT1G69560.2 31.250 208 124 5 19 212 117 319 1.49e-24 102
Msa0644980 AT1G22640.3 65.714 70 22 1 69 138 1 68 1.77e-24 99.4
Msa0644980 AT5G58850.1 39.716 141 79 3 7 142 86 225 5.76e-24 102
Msa0644980 AT3G09370.2 45.794 107 57 1 20 126 130 235 6.94e-24 102
Msa0644980 AT3G09370.1 45.794 107 57 1 20 126 125 230 7.32e-24 102
Msa0644980 AT3G09370.3 45.794 107 57 1 20 126 138 243 9.48e-24 102
Msa0644980 AT2G23290.1 47.059 102 53 1 25 126 13 113 1.79e-23 99.0
Msa0644980 AT3G23250.2 65.574 61 21 0 69 129 1 61 3.14e-23 96.7
Msa0644980 AT1G17950.1 43.925 107 59 1 25 131 5 110 4.25e-23 96.7
Msa0644980 AT1G26780.1 44.144 111 59 2 23 132 96 204 6.79e-23 97.1
Msa0644980 AT1G26780.2 44.144 111 59 2 23 132 96 204 7.00e-23 98.2
Msa0644980 AT5G11510.3 43.519 108 60 1 20 127 76 182 8.64e-23 100
Msa0644980 AT5G11510.1 43.519 108 60 1 20 127 76 182 8.64e-23 100
Msa0644980 AT5G11510.4 43.519 108 60 1 20 127 76 182 8.64e-23 100
Msa0644980 AT2G25230.1 42.991 107 59 2 28 134 29 133 1.02e-22 95.5
Msa0644980 AT5G11510.2 43.519 108 60 1 20 127 76 182 1.04e-22 99.8
Msa0644980 AT5G11510.5 43.519 108 60 1 20 127 76 182 1.10e-22 99.8
Msa0644980 AT1G66380.3 50.526 95 39 1 55 141 7 101 1.25e-22 91.3
Msa0644980 AT3G29020.1 37.500 128 78 2 25 152 65 190 4.85e-22 93.6
Msa0644980 AT4G32730.5 41.667 108 62 1 20 127 82 188 7.71e-22 97.4
Msa0644980 AT4G32730.4 41.667 108 62 1 20 127 82 188 7.71e-22 97.4
Msa0644980 AT4G32730.3 41.667 108 62 1 20 127 82 188 7.71e-22 97.4
Msa0644980 AT4G32730.2 41.667 108 62 1 20 127 82 188 7.71e-22 97.4
Msa0644980 AT4G32730.1 41.667 108 62 1 20 127 82 188 8.04e-22 97.1
Msa0644980 AT3G29020.2 37.500 128 78 2 25 152 67 192 1.01e-21 94.0
Msa0644980 AT5G14750.4 62.712 59 22 0 69 127 1 59 3.74e-21 88.6
Msa0644980 AT5G14750.2 62.712 59 22 0 69 127 1 59 3.74e-21 88.6
Msa0644980 AT1G73410.1 43.925 107 59 1 25 131 6 111 4.23e-21 91.3
Msa0644980 AT5G17800.1 39.823 113 67 1 16 128 84 195 7.13e-21 92.0
Msa0644980 AT4G33450.1 38.393 112 68 1 24 135 18 128 7.90e-21 90.5
Msa0644980 AT1G73410.2 43.925 107 59 1 25 131 6 111 1.30e-20 89.0
Msa0644980 AT1G71030.2 55.072 69 31 0 62 130 5 73 5.88e-20 86.3
Msa0644980 AT1G71030.1 55.072 69 31 0 62 130 19 87 8.57e-20 86.3
Msa0644980 AT4G00540.2 41.739 115 61 3 23 133 101 213 4.78e-19 87.8
Msa0644980 AT4G00540.1 41.739 115 61 3 23 133 99 211 9.38e-19 87.0
Msa0644980 AT1G18960.1 39.815 108 58 4 25 130 10 112 9.81e-19 85.9
Msa0644980 AT5G40430.1 37.302 126 74 4 11 134 38 160 1.46e-18 84.3
Msa0644980 AT2G02820.3 40.196 102 60 1 28 129 33 133 2.75e-18 84.7
Msa0644980 AT2G02820.1 40.196 102 60 1 28 129 33 133 3.34e-18 85.5
Msa0644980 AT1G66380.2 51.852 81 39 0 23 103 8 88 4.48e-18 79.3
Msa0644980 AT2G02820.2 40.196 102 60 1 28 129 33 133 5.34e-18 85.1
Msa0644980 AT2G37630.1 38.017 121 72 2 28 145 7 127 7.85e-17 80.9
Msa0644980 AT5G39700.1 30.719 153 99 2 4 156 35 180 2.41e-16 76.6
Msa0644980 AT1G14350.2 38.235 102 62 1 28 129 28 128 9.01e-16 78.2
Msa0644980 AT1G14350.1 38.235 102 62 1 28 129 28 128 9.01e-16 78.2
Msa0644980 AT5G59780.1 50.000 56 28 0 81 136 1 56 6.73e-14 69.3
Msa0644980 AT3G46130.2 50.000 56 28 0 81 136 1 56 1.27e-13 68.9
Msa0644980 AT4G25560.2 64.706 51 17 1 82 131 3 53 3.58e-13 68.2
Msa0644980 AT1G74650.3 64.286 42 15 0 89 130 2 43 8.49e-12 65.1
Msa0644980 AT5G61420.1 39.175 97 58 1 92 188 2 97 1.30e-11 64.7
Msa0644980 AT1G14350.3 44.444 63 35 0 67 129 23 85 2.03e-11 65.1
Msa0644980 AT1G14350.4 44.444 63 35 0 67 129 23 85 2.03e-11 65.1
Msa0644980 AT3G28910.2 54.348 46 21 0 89 134 2 47 2.46e-11 63.5

Find 65 sgRNAs with CRISPR-Local

Find 141 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCATGTTAAAACATTATTT+TGG 0.113093 4_3:-49346362 Msa0644980:three_prime_UTR
TTGCTTATTAATAAAGTTTC+TGG 0.141511 4_3:-49346212 None:intergenic
ATCCATTTGCATTCCCTTCT+TGG 0.153405 4_3:-49348974 Msa0644980:CDS
TGACAGCAAAAGTTTCTATT+TGG 0.177929 4_3:-49347045 Msa0644980:CDS
CCTATATTATGGTCTTTGTT+AGG 0.192944 4_3:+49347254 None:intergenic
ACAATGAAATCAAGAACTTT+TGG 0.281358 4_3:-49347355 Msa0644980:CDS
GGGAGTGTAAATATTATTAA+TGG 0.283826 4_3:-49347011 Msa0644980:CDS
ATTTCATTGTCTGTTCTTCC+AGG 0.287022 4_3:+49347368 None:intergenic
GAAAACACTTTGTTGAATCT+TGG 0.318474 4_3:+49346659 None:intergenic
AATACCATTATGTCAGGTTC+TGG 0.332436 4_3:-49347122 Msa0644980:CDS
TGCATTCCCTTCTTGGAAAC+AGG 0.336319 4_3:-49348967 Msa0644980:intron
TTATAAAACCTCCTATATTA+TGG 0.343826 4_3:+49347243 None:intergenic
GAGATTTATCTGTTGGAGAT+TGG 0.356328 4_3:-49346746 Msa0644980:CDS
CAAATTGCGGCGCGCTTACC+TGG 0.371371 4_3:-49347386 Msa0644980:CDS
CTATATTATGGTCTTTGTTA+GGG 0.372088 4_3:+49347255 None:intergenic
ATCTGTTGGAGATTGGGATT+TGG 0.391051 4_3:-49346739 Msa0644980:CDS
AGATTTATCTGTTGGAGATT+GGG 0.394773 4_3:-49346745 Msa0644980:CDS
AATATTATTAATGGTGTAGA+AGG 0.397124 4_3:-49347002 Msa0644980:CDS
TAAATAGTGGACAAGGTTGT+TGG 0.399936 4_3:-49349120 Msa0644980:CDS
GAAGATTCATCGCTTGCGTT+TGG 0.416241 4_3:+49347284 None:intergenic
ACACCCAGAACCTGACATAA+TGG 0.416433 4_3:+49347118 None:intergenic
TTTGGGATGGTTTATTTGGA+GGG 0.422493 4_3:-49346344 Msa0644980:three_prime_UTR
ATACAGTACAGGGATTAATA+AGG 0.423386 4_3:-49346589 Msa0644980:three_prime_UTR
CCTAACAAAGACCATAATAT+AGG 0.430327 4_3:-49347254 Msa0644980:CDS
AGAAAATTTATTGATATATG+TGG 0.436841 4_3:-49346268 Msa0644980:three_prime_UTR
ATAAGCTTCTCATCTTCCTC+TGG 0.451621 4_3:+49349154 None:intergenic
GAGGTGGAGAATTTGTTTCA+TGG 0.455611 4_3:-49346768 Msa0644980:CDS
AACAACTCTAAGCTTAGAAA+AGG 0.456430 4_3:-49349187 Msa0644980:CDS
TTTCATGGAGATTTATCTGT+TGG 0.457815 4_3:-49346753 Msa0644980:CDS
ATTATGTCAGGTTCTGGGTG+TGG 0.459963 4_3:-49347116 Msa0644980:CDS
AGGAAGCCAGAGATTGCATC+TGG 0.463580 4_3:-49349214 Msa0644980:CDS
ATACCATTATGTCAGGTTCT+GGG 0.465861 4_3:-49347121 Msa0644980:CDS
AGTTACACATTAACTTTATG+TGG 0.475439 4_3:-49346391 Msa0644980:three_prime_UTR
TTCCAAGAAGGGAATGCAAA+TGG 0.481023 4_3:+49348972 None:intergenic
TGGTGTAGAAGGAGATGAGA+TGG 0.483693 4_3:-49346991 Msa0644980:CDS
ATGAACTACATGTTAAATAG+TGG 0.487097 4_3:-49349133 Msa0644980:CDS
AATTTATTGATATATGTGGT+TGG 0.493008 4_3:-49346264 Msa0644980:three_prime_UTR
CTACACCAATCTGAAAACTT+AGG 0.494388 4_3:+49346304 None:intergenic
TTCTTCAATAATAGTACTAC+AGG 0.501923 4_3:-49347092 Msa0644980:CDS
GGGATGGTTTATTTGGAGGG+AGG 0.507860 4_3:-49346341 Msa0644980:three_prime_UTR
AGTGATGTTGCTAGAAATGC+TGG 0.514684 4_3:-49349097 Msa0644980:CDS
AATGCACCACGTTTAAGATC+AGG 0.532050 4_3:+49349022 None:intergenic
AATGCATGCAATGGAGAAGA+TGG 0.536091 4_3:-49346891 Msa0644980:CDS
TCTCTACATCAAGGTGAGGA+AGG 0.540789 4_3:-49349254 None:intergenic
TCAAAGATGGTCTCAAATTG+CGG 0.554550 4_3:-49347399 Msa0644980:intron
AAGTGGACCTGTTTCCAAGA+AGG 0.565199 4_3:+49348960 None:intergenic
CTCTACATCAAGGTGAGGAA+GGG 0.569671 4_3:-49349253 None:intergenic
AGTGGACCTGTTTCCAAGAA+GGG 0.574708 4_3:+49348961 None:intergenic
AACAAAGACCATAATATAGG+AGG 0.580798 4_3:-49347251 Msa0644980:CDS
GGAGATGAAGTATTGAACAT+AGG 0.583399 4_3:+49347176 None:intergenic
CTAAGCTTAGAAAAGGATTG+TGG 0.585725 4_3:-49349180 Msa0644980:CDS
ATGATATGTTCTTCTTCCTG+TGG 0.588188 4_3:+49348995 None:intergenic
TAGAGCTGATCATGATGAGG+TGG 0.613651 4_3:-49346784 Msa0644980:CDS
AATGCTGGATTGCAAAGATG+TGG 0.617901 4_3:-49349082 Msa0644980:CDS
TAAGATGGATCAATTACTTG+AGG 0.619133 4_3:-49349045 Msa0644980:CDS
AAAATGGAGAATGCATGCAA+TGG 0.624965 4_3:-49346900 Msa0644980:CDS
ACGTGGTGCATTCTCACCAC+AGG 0.629748 4_3:-49349011 Msa0644980:CDS
AAAAGGATTGTGGTCACCAG+AGG 0.635321 4_3:-49349170 Msa0644980:CDS
TTAGTATTAACACTCTCTAG+AGG 0.641496 4_3:+49346951 None:intergenic
AGTACAGGGATTAATAAGGT+AGG 0.643047 4_3:-49346585 Msa0644980:three_prime_UTR
GTATTAACACTCTCTAGAGG+AGG 0.651371 4_3:+49346954 None:intergenic
TACATGTTAAATAGTGGACA+AGG 0.672810 4_3:-49349127 Msa0644980:CDS
TTGAGGCCTGATCTTAAACG+TGG 0.683943 4_3:-49349028 Msa0644980:CDS
AGGGATTCAATAGTACAATG+AGG 0.688594 4_3:-49349234 Msa0644980:CDS
AAATAGAGCTGATCATGATG+AGG 0.716489 4_3:-49346787 Msa0644980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATAATAATAAAAAA+AGG - chr4_3:49346815-49346834 Msa0644980:CDS 0.0%
!!! ATTTTATAATAATAAAAAAA+GGG - chr4_3:49346816-49346835 Msa0644980:CDS 0.0%
!!! TTCATCATTTTATTAAAAAT+TGG + chr4_3:49346797-49346816 None:intergenic 10.0%
!! TTCTCAAATTAAGATAAATT+TGG + chr4_3:49346615-49346634 None:intergenic 15.0%
!! TCATAAATTTAAACATGAAA+AGG - chr4_3:49347263-49347282 Msa0644980:CDS 15.0%
!! AGAAAATTTATTGATATATG+TGG - chr4_3:49349186-49349205 Msa0644980:CDS 15.0%
!!! GATAAATAAATTGATGATCT+AGG + chr4_3:49346530-49346549 None:intergenic 20.0%
!! ATATTATACATACTCATGTT+TGG + chr4_3:49346741-49346760 None:intergenic 20.0%
!! AAACATGAGTATGTATAATA+TGG - chr4_3:49346740-49346759 Msa0644980:CDS 20.0%
!! AAATGTAAATATTCACCTTT+AGG - chr4_3:49346875-49346894 Msa0644980:CDS 20.0%
!!! ATTCTAAAAAATAGTCCTAA+AGG + chr4_3:49346893-49346912 None:intergenic 20.0%
!!! TACATAGCTATTTTTTTCAT+GGG + chr4_3:49346983-49347002 None:intergenic 20.0%
!!! ATACATAGCTATTTTTTTCA+TGG + chr4_3:49346984-49347003 None:intergenic 20.0%
!! ATACACAACAATATAGTATA+TGG - chr4_3:49347071-49347090 Msa0644980:CDS 20.0%
!! TTCTATATCATAAATGATTC+AGG + chr4_3:49347150-49347169 None:intergenic 20.0%
!! GTCTAAAAAATCTAAATCTT+TGG + chr4_3:49347239-49347258 None:intergenic 20.0%
!! ACAACAAATTTAAATCACTT+GGG + chr4_3:49347391-49347410 None:intergenic 20.0%
!! AACAACAAATTTAAATCACT+TGG + chr4_3:49347392-49347411 None:intergenic 20.0%
!! TACAATTGAAAACAACATAT+AGG - chr4_3:49347636-49347655 Msa0644980:intron 20.0%
!! TTTACTGTCTATTTCATAAA+TGG - chr4_3:49347835-49347854 Msa0644980:intron 20.0%
!! AAAGATTATACATGAATAGA+AGG + chr4_3:49347955-49347974 None:intergenic 20.0%
!! TTATAAAACCTCCTATATTA+TGG + chr4_3:49348214-49348233 None:intergenic 20.0%
!! AATATTATTAATGGTGTAGA+AGG - chr4_3:49348452-49348471 Msa0644980:intron 20.0%
!!! ATATAAAGGAGTGTAAAAAA+TGG + chr4_3:49348829-49348848 None:intergenic 20.0%
!! CAGCAAAAATACAAATATAA+AGG + chr4_3:49348843-49348862 None:intergenic 20.0%
!!! AAAATAATGTTTTAACATGG+GGG + chr4_3:49349093-49349112 None:intergenic 20.0%
!!! CAAAATAATGTTTTAACATG+GGG + chr4_3:49349094-49349113 None:intergenic 20.0%
!!! CCAAAATAATGTTTTAACAT+GGG + chr4_3:49349095-49349114 None:intergenic 20.0%
!!! CCATGTTAAAACATTATTTT+GGG - chr4_3:49349093-49349112 Msa0644980:CDS 20.0%
!! AATTTATTGATATATGTGGT+TGG - chr4_3:49349190-49349209 Msa0644980:CDS 20.0%
! ATGAACTACATGTTAAATAG+TGG - chr4_3:49346321-49346340 Msa0644980:three_prime_UTR 25.0%
! TAAATTAAGGAGCCAATATA+TGG + chr4_3:49346574-49346593 None:intergenic 25.0%
!!! GAAGATAACCATTTTTACAT+TGG - chr4_3:49346632-49346651 Msa0644980:three_prime_UTR 25.0%
!!! CATCTTGAAAACATTTTTTG+AGG + chr4_3:49346767-49346786 None:intergenic 25.0%
!!! CTCAAAAAATGTTTTCAAGA+TGG - chr4_3:49346765-49346784 Msa0644980:CDS 25.0%
! GATAACTTGAGAGAAAAAAA+TGG + chr4_3:49346930-49346949 None:intergenic 25.0%
! TAACTAAATAGTATTACGAG+AGG - chr4_3:49347884-49347903 Msa0644980:intron 25.0%
!! TTTTGCTTCATTTTCAAAGA+TGG - chr4_3:49348042-49348061 Msa0644980:intron 25.0%
!! ACAATGAAATCAAGAACTTT+TGG - chr4_3:49348099-49348118 Msa0644980:intron 25.0%
! CTATATTATGGTCTTTGTTA+GGG + chr4_3:49348202-49348221 None:intergenic 25.0%
! TTCTTCAATAATAGTACTAC+AGG - chr4_3:49348362-49348381 Msa0644980:intron 25.0%
!!! TTCTATTTGGAAAAAGTGTT+TGG - chr4_3:49348422-49348441 Msa0644980:intron 25.0%
!!! TCTATTTGGAAAAAGTGTTT+GGG - chr4_3:49348423-49348442 Msa0644980:intron 25.0%
!! GGGAGTGTAAATATTATTAA+TGG - chr4_3:49348443-49348462 Msa0644980:intron 25.0%
! CAGTTTGAAAAATCAAGAAA+TGG + chr4_3:49348770-49348789 None:intergenic 25.0%
! AGTTACACATTAACTTTATG+TGG - chr4_3:49349063-49349082 Msa0644980:CDS 25.0%
!!! AAATAATGTTTTAACATGGG+GGG + chr4_3:49349092-49349111 None:intergenic 25.0%
!! CCCATGTTAAAACATTATTT+TGG - chr4_3:49349092-49349111 Msa0644980:CDS 25.0%
!!! CCCAAAATAATGTTTTAACA+TGG + chr4_3:49349096-49349115 None:intergenic 25.0%
!!! GTTAAAACATTATTTTGGGA+TGG - chr4_3:49349097-49349116 Msa0644980:CDS 25.0%
!!! TTATTTTGGGATGGTTTATT+TGG - chr4_3:49349106-49349125 Msa0644980:CDS 25.0%
AACAACTCTAAGCTTAGAAA+AGG - chr4_3:49346267-49346286 Msa0644980:three_prime_UTR 30.0%
!! TACATGTTAAATAGTGGACA+AGG - chr4_3:49346327-49346346 Msa0644980:three_prime_UTR 30.0%
AAAGATGTGGAAAAAGTTGT+AGG - chr4_3:49346385-49346404 Msa0644980:three_prime_UTR 30.0%
TAAGATGGATCAATTACTTG+AGG - chr4_3:49346409-49346428 Msa0644980:three_prime_UTR 30.0%
CCAATATATGGAATCGAATT+TGG + chr4_3:49346562-49346581 None:intergenic 30.0%
CCAAATTCGATTCCATATAT+TGG - chr4_3:49346559-49346578 Msa0644980:three_prime_UTR 30.0%
TTAAGGAGCCAATGTAAAAA+TGG + chr4_3:49346643-49346662 None:intergenic 30.0%
CTCCTTAATTCACTATTTAG+TGG - chr4_3:49346655-49346674 Msa0644980:three_prime_UTR 30.0%
GTCCACTAAATAGTGAATTA+AGG + chr4_3:49346660-49346679 None:intergenic 30.0%
!!! ATTTTGAAACAGTTGTGCTA+TGG - chr4_3:49347004-49347023 Msa0644980:CDS 30.0%
AAATTGTCTGTCTCTCTAAA+TGG + chr4_3:49347452-49347471 None:intergenic 30.0%
! GAGACAGACAATTTTGTAAA+AGG - chr4_3:49347458-49347477 Msa0644980:intron 30.0%
AATTAGTTGTGTCGTATCTT+AGG + chr4_3:49347519-49347538 None:intergenic 30.0%
! TTGTACTTTTGTCTTCTACA+AGG + chr4_3:49347621-49347640 None:intergenic 30.0%
ACTGTGATTTCGTCTTTATT+TGG - chr4_3:49347660-49347679 Msa0644980:intron 30.0%
TTTGAACAATACACGTAGTA+TGG + chr4_3:49347705-49347724 None:intergenic 30.0%
ATAGTATTACGAGAGGAAAT+AGG - chr4_3:49347891-49347910 Msa0644980:intron 30.0%
CCTATATTATGGTCTTTGTT+AGG + chr4_3:49348203-49348222 None:intergenic 30.0%
CCTAACAAAGACCATAATAT+AGG - chr4_3:49348200-49348219 Msa0644980:intron 30.0%
AACAAAGACCATAATATAGG+AGG - chr4_3:49348203-49348222 Msa0644980:intron 30.0%
! AAAACTGTGTTTTGCATTGT+TGG + chr4_3:49348311-49348330 None:intergenic 30.0%
! GTTTTCAATACCATTATGTC+AGG - chr4_3:49348326-49348345 Msa0644980:intron 30.0%
TGACAGCAAAAGTTTCTATT+TGG - chr4_3:49348409-49348428 Msa0644980:intron 30.0%
TTAGTATTAACACTCTCTAG+AGG + chr4_3:49348506-49348525 None:intergenic 30.0%
TTGTGAACATAGCGTAAAAA+TGG - chr4_3:49348538-49348557 Msa0644980:intron 30.0%
TTTCATGGAGATTTATCTGT+TGG - chr4_3:49348701-49348720 Msa0644980:intron 30.0%
AGATTTATCTGTTGGAGATT+GGG - chr4_3:49348709-49348728 Msa0644980:intron 30.0%
GAAAACACTTTGTTGAATCT+TGG + chr4_3:49348798-49348817 None:intergenic 30.0%
!!! TTTTTGCTGTTATACAGTAC+AGG - chr4_3:49348854-49348873 Msa0644980:intron 30.0%
!!! TTTTGCTGTTATACAGTACA+GGG - chr4_3:49348855-49348874 Msa0644980:intron 30.0%
ATACAGTACAGGGATTAATA+AGG - chr4_3:49348865-49348884 Msa0644980:intron 30.0%
! TAACTACAGTAGTTTTCTGT+GGG + chr4_3:49348971-49348990 None:intergenic 30.0%
! TTAACTACAGTAGTTTTCTG+TGG + chr4_3:49348972-49348991 None:intergenic 30.0%
! CATATCCTAAGTTTTCAGAT+TGG - chr4_3:49349145-49349164 Msa0644980:CDS 30.0%
AGGGATTCAATAGTACAATG+AGG - chr4_3:49346220-49346239 Msa0644980:three_prime_UTR 35.0%
!!! TTTTTTCCAGATGCAATCTC+TGG + chr4_3:49346249-49346268 None:intergenic 35.0%
CTAAGCTTAGAAAAGGATTG+TGG - chr4_3:49346274-49346293 Msa0644980:three_prime_UTR 35.0%
!! TAAATAGTGGACAAGGTTGT+TGG - chr4_3:49346334-49346353 Msa0644980:three_prime_UTR 35.0%
GAAAAAGTTGTAGGCTAAGA+TGG - chr4_3:49346394-49346413 Msa0644980:three_prime_UTR 35.0%
ATGATATGTTCTTCTTCCTG+TGG + chr4_3:49346462-49346481 None:intergenic 35.0%
ATCTAGGTAGAAAAGTGAAG+TGG + chr4_3:49346514-49346533 None:intergenic 35.0%
TAGATTTCACCTCTTGATGT+GGG + chr4_3:49346956-49346975 None:intergenic 35.0%
ATAGATTTCACCTCTTGATG+TGG + chr4_3:49346957-49346976 None:intergenic 35.0%
TCAAAGATGGTCTCAAATTG+CGG - chr4_3:49348055-49348074 Msa0644980:intron 35.0%
ATTTCATTGTCTGTTCTTCC+AGG + chr4_3:49348089-49348108 None:intergenic 35.0%
!! GGAGATGAAGTATTGAACAT+AGG + chr4_3:49348281-49348300 None:intergenic 35.0%
AATACCATTATGTCAGGTTC+TGG - chr4_3:49348332-49348351 Msa0644980:intron 35.0%
ATACCATTATGTCAGGTTCT+GGG - chr4_3:49348333-49348352 Msa0644980:intron 35.0%
AAAATGGAGAATGCATGCAA+TGG - chr4_3:49348554-49348573 Msa0644980:intron 35.0%
AAATAGAGCTGATCATGATG+AGG - chr4_3:49348667-49348686 Msa0644980:intron 35.0%
GAGATTTATCTGTTGGAGAT+TGG - chr4_3:49348708-49348727 Msa0644980:intron 35.0%
AGTACAGGGATTAATAAGGT+AGG - chr4_3:49348869-49348888 Msa0644980:intron 35.0%
!!! TTTTGGGATGGTTTATTTGG+AGG - chr4_3:49349109-49349128 Msa0644980:CDS 35.0%
! TTTGGGATGGTTTATTTGGA+GGG - chr4_3:49349110-49349129 Msa0644980:CDS 35.0%
CTACACCAATCTGAAAACTT+AGG + chr4_3:49349153-49349172 None:intergenic 35.0%
ATAAGCTTCTCATCTTCCTC+TGG + chr4_3:49346303-49346322 None:intergenic 40.0%
AGTGATGTTGCTAGAAATGC+TGG - chr4_3:49346357-49346376 Msa0644980:three_prime_UTR 40.0%
AATGCTGGATTGCAAAGATG+TGG - chr4_3:49346372-49346391 Msa0644980:three_prime_UTR 40.0%
! AATGCACCACGTTTAAGATC+AGG + chr4_3:49346435-49346454 None:intergenic 40.0%
ATCCATTTGCATTCCCTTCT+TGG - chr4_3:49346480-49346499 Msa0644980:three_prime_UTR 40.0%
TTCCAAGAAGGGAATGCAAA+TGG + chr4_3:49346485-49346504 None:intergenic 40.0%
TAAGCAGATCAAGACTTGTG+TGG - chr4_3:49347207-49347226 Msa0644980:CDS 40.0%
! TTGTGTCGTATCTTAGGTTG+AGG + chr4_3:49347513-49347532 None:intergenic 40.0%
ATAGGTCTAAAAGCCTCTAG+CGG - chr4_3:49347909-49347928 Msa0644980:intron 40.0%
!!! TTTTGCATTGTTGGTGGTGA+TGG + chr4_3:49348302-49348321 None:intergenic 40.0%
! ACTGTGTTTTGCATTGTTGG+TGG + chr4_3:49348308-49348327 None:intergenic 40.0%
! GTATTAACACTCTCTAGAGG+AGG + chr4_3:49348503-49348522 None:intergenic 40.0%
AATGCATGCAATGGAGAAGA+TGG - chr4_3:49348563-49348582 Msa0644980:intron 40.0%
! GAGGTGGAGAATTTGTTTCA+TGG - chr4_3:49348686-49348705 Msa0644980:intron 40.0%
ATCTGTTGGAGATTGGGATT+TGG - chr4_3:49348715-49348734 Msa0644980:intron 40.0%
AAAAGGATTGTGGTCACCAG+AGG - chr4_3:49346284-49346303 Msa0644980:three_prime_UTR 45.0%
TTGAGGCCTGATCTTAAACG+TGG - chr4_3:49346426-49346445 Msa0644980:three_prime_UTR 45.0%
TGCATTCCCTTCTTGGAAAC+AGG - chr4_3:49346487-49346506 Msa0644980:three_prime_UTR 45.0%
AGTGGACCTGTTTCCAAGAA+GGG + chr4_3:49346496-49346515 None:intergenic 45.0%
AAGTGGACCTGTTTCCAAGA+AGG + chr4_3:49346497-49346516 None:intergenic 45.0%
GTTATCTCACCCACATCAAG+AGG - chr4_3:49346944-49346963 Msa0644980:CDS 45.0%
!! TGTCGTATCTTAGGTTGAGG+AGG + chr4_3:49347510-49347529 None:intergenic 45.0%
GAAGATTCATCGCTTGCGTT+TGG + chr4_3:49348173-49348192 None:intergenic 45.0%
ACACCCAGAACCTGACATAA+TGG + chr4_3:49348339-49348358 None:intergenic 45.0%
!! ATTATGTCAGGTTCTGGGTG+TGG - chr4_3:49348338-49348357 Msa0644980:intron 45.0%
TGGTGTAGAAGGAGATGAGA+TGG - chr4_3:49348463-49348482 Msa0644980:intron 45.0%
TAGAGCTGATCATGATGAGG+TGG - chr4_3:49348670-49348689 Msa0644980:intron 45.0%
!! ATAATAAGATAAATAAATTA+AGG + chr4_3:49346587-49346606 None:intergenic 5.0%
AGGAAGCCAGAGATTGCATC+TGG - chr4_3:49346240-49346259 Msa0644980:three_prime_UTR 50.0%
CTGATGTCAAACACGCTGTC+AGG + chr4_3:49347042-49347061 None:intergenic 50.0%
CTGACAGCGTGTTTGACATC+AGG - chr4_3:49347040-49347059 Msa0644980:CDS 50.0%
! ACAACAAACTGTGCCGCTAG+AGG + chr4_3:49347925-49347944 None:intergenic 50.0%
GGGATGGTTTATTTGGAGGG+AGG - chr4_3:49349113-49349132 Msa0644980:CDS 50.0%
ACGTGGTGCATTCTCACCAC+AGG - chr4_3:49346443-49346462 Msa0644980:three_prime_UTR 55.0%
CAAATTGCGGCGCGCTTACC+TGG - chr4_3:49348068-49348087 Msa0644980:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 49346213 49349263 49346213 ID=Msa0644980;Name=Msa0644980
chr4_3 mRNA 49346213 49349263 49346213 ID=Msa0644980-mRNA-1;Parent=Msa0644980;Name=Msa0644980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|1|1|1|1|2|473|341
chr4_3 exon 49346213 49347415 49346213 ID=Msa0644980-mRNA-1:exon:11766;Parent=Msa0644980-mRNA-1
chr4_3 exon 49348968 49349263 49348968 ID=Msa0644980-mRNA-1:exon:11765;Parent=Msa0644980-mRNA-1
chr4_3 CDS 49348968 49349263 49348968 ID=Msa0644980-mRNA-1:cds;Parent=Msa0644980-mRNA-1
chr4_3 CDS 49346686 49347415 49346686 ID=Msa0644980-mRNA-1:cds;Parent=Msa0644980-mRNA-1
chr4_3 three_prime_UTR 49346213 49346685 49346213 ID=Msa0644980-mRNA-1:three_prime_utr;Parent=Msa0644980-mRNA-1
Gene Sequence

>Msa0644980

GTGAGGAAGGGATTCAATAGTACAATGAGGAAGCCAGAGATTGCATCTGGAAAAAACAACTCTAAGCTTAGAAAAGGATTGTGGTCACCAGAGGAAGATGAGAAGCTTATGAACTACATGTTAAATAGTGGACAAGGTTGTTGGAGTGATGTTGCTAGAAATGCTGGATTGCAAAGATGTGGAAAAAGTTGTAGGCTAAGATGGATCAATTACTTGAGGCCTGATCTTAAACGTGGTGCATTCTCACCACAGGAAGAAGAACATATCATCCATTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATTGCGGCGCGCTTACCTGGAAGAACAGACAATGAAATCAAGAACTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACATGTCGTCGAACACTTCACCAAACGCAAGCGATGAATCTTCGTACGACCCTAACAAAGACCATAATATAGGAGGTTTTATAACTTCTTCAACACAAGATCAACAACATATTGATAATCATTTTATGCCTATGTTCAATACTTCATCTCCATCACCACCAACAATGCAAAACACAGTTTTCAATACCATTATGTCAGGTTCTGGGTGTGGATTCTTCAATAATAGTACTACAGGAACATACTTGTCACAGAATAATCATGACAGCAAAAGTTTCTATTTGGAAAAAGTGTTTGGGAGTGTAAATATTATTAATGGTGTAGAAGGAGATGAGATGGAAATTTACAATGTTCCTCCTCTAGAGAGTGTTAATACTAATAGTACTATTACTTGTGAACATAGCGTAAAAATGGAGAATGCATGCAATGGAGAAGATGGTAATTACAATAGTAGTTATAACTTTGATGACATAAACAACATTGTTATTAACAACTGCAATGTTGTTAGTAAGAGAAGTGAAAATAGAGCTGATCATGATGAGGTGGAGAATTTGTTTCATGGAGATTTATCTGTTGGAGATTGGGATTTGGAAGATTTGATGAAAGATGTTTCATCATTTCCATTTCTTGATTTTTCAAACTGA
Protein sequence

>Msa0644980

VRKGFNSTMRKPEIASGKNNSKLRKGLWSPEEDEKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEEHIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSNTSPNASDESSYDPNKDHNIGGFITSSTQDQQHIDNHFMPMFNTSSPSPPTMQNTVFNTIMSGSGCGFFNNSTTGTYLSQNNHDSKSFYLEKVFGSVNIINGVEGDEMEIYNVPPLESVNTNSTITCEHSVKMENACNGEDGNYNSSYNFDDINNIVINNCNVVSKRSENRADHDEVENLFHGDLSVGDWDLEDLMKDVSSFPFLDFSN*