Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340710 | XP_003594881.1 | 95.573 | 497 | 22 | 0 | 1 | 497 | 1 | 497 | 0.0 | 918 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340710 | sp|O49432|QRT3_ARATH | 61.522 | 460 | 160 | 5 | 38 | 495 | 37 | 481 | 0.0 | 564 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340710 | G7INE9 | 95.573 | 497 | 22 | 0 | 1 | 497 | 1 | 497 | 0.0 | 918 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa1340710 | 0.800885 | 1.168172e-48 | -8.615850e-47 |
| Msa0017510 | Msa1340710 | 0.813470 | 2.518125e-51 | -8.615850e-47 |
| Msa0028170 | Msa1340710 | 0.814239 | 1.705146e-51 | -8.615850e-47 |
| Msa0631120 | Msa1340710 | 0.820550 | 6.465239e-53 | -8.615850e-47 |
| Msa0633840 | Msa1340710 | 0.805411 | 1.352614e-49 | -8.615850e-47 |
| Msa0638070 | Msa1340710 | 0.810620 | 1.052737e-50 | -8.615850e-47 |
| Msa0657970 | Msa1340710 | 0.812459 | 4.194711e-51 | -8.615850e-47 |
| Msa0663240 | Msa1340710 | 0.810842 | 9.424872e-51 | -8.615850e-47 |
| Msa0663380 | Msa1340710 | 0.800622 | 1.322204e-48 | -8.615850e-47 |
| Msa0669340 | Msa1340710 | 0.802296 | 6.000884e-49 | -8.615850e-47 |
| Msa0682550 | Msa1340710 | 0.800281 | 1.551010e-48 | -8.615850e-47 |
| Msa0684500 | Msa1340710 | 0.829615 | 4.662894e-55 | -8.615850e-47 |
| Msa0688480 | Msa1340710 | 0.808977 | 2.375776e-50 | -8.615850e-47 |
| Msa0740430 | Msa1340710 | 0.801595 | 8.362314e-49 | -8.615850e-47 |
| Msa0790660 | Msa1340710 | -0.801613 | 8.291566e-49 | -8.615850e-47 |
| Msa0824660 | Msa1340710 | 0.802817 | 4.686478e-49 | -8.615850e-47 |
| Msa0128220 | Msa1340710 | 0.810835 | 9.460473e-51 | -8.615850e-47 |
| Msa0157290 | Msa1340710 | 0.814116 | 1.814544e-51 | -8.615850e-47 |
| Msa0164980 | Msa1340710 | 0.825546 | 4.418904e-54 | -8.615850e-47 |
| Msa0174320 | Msa1340710 | 0.821583 | 3.738120e-53 | -8.615850e-47 |
| Msa0225600 | Msa1340710 | 0.801593 | 8.367449e-49 | -8.615850e-47 |
| Msa1308380 | Msa1340710 | 0.801791 | 7.622482e-49 | -8.615850e-47 |
| Msa1340710 | Msa1353470 | 0.801232 | 9.923743e-49 | -8.615850e-47 |
| Msa1340710 | Msa1409870 | 0.804793 | 1.821867e-49 | -8.615850e-47 |
| Msa1340710 | Msa1420490 | 0.806141 | 9.499019e-50 | -8.615850e-47 |
| Msa1340710 | Msa1423390 | 0.805261 | 1.454134e-49 | -8.615850e-47 |
| Msa1340710 | Msa1436410 | 0.846619 | 1.938484e-59 | -8.615850e-47 |
| Msa1340710 | Msa1439320 | 0.802155 | 6.416900e-49 | -8.615850e-47 |
| Msa1340710 | Msa1440370 | 0.806440 | 8.217134e-50 | -8.615850e-47 |
| Msa1340710 | Msa1440810 | 0.803411 | 3.530483e-49 | -8.615850e-47 |
| Msa0410650 | Msa1340710 | 0.804931 | 1.704397e-49 | -8.615850e-47 |
| Msa0419820 | Msa1340710 | 0.805329 | 1.407141e-49 | -8.615850e-47 |
| Msa1013400 | Msa1340710 | 0.813336 | 2.695456e-51 | -8.615850e-47 |
| Msa1024740 | Msa1340710 | 0.803927 | 2.760180e-49 | -8.615850e-47 |
| Msa1082500 | Msa1340710 | 0.822748 | 2.006399e-53 | -8.615850e-47 |
| Msa1085200 | Msa1340710 | 0.804241 | 2.374228e-49 | -8.615850e-47 |
| Msa1093530 | Msa1340710 | 0.808100 | 3.655986e-50 | -8.615850e-47 |
| Msa0243610 | Msa1340710 | 0.899102 | 2.762189e-77 | -8.615850e-47 |
| Msa0282210 | Msa1340710 | 0.873005 | 2.054422e-67 | -8.615850e-47 |
| Msa0283450 | Msa1340710 | 0.807232 | 5.589495e-50 | -8.615850e-47 |
| Msa0288100 | Msa1340710 | 0.812480 | 4.151799e-51 | -8.615850e-47 |
| Msa0300180 | Msa1340710 | 0.802318 | 5.939423e-49 | -8.615850e-47 |
| Msa0326520 | Msa1340710 | 0.804600 | 1.998937e-49 | -8.615850e-47 |
| Msa0332000 | Msa1340710 | 0.800977 | 1.118784e-48 | -8.615850e-47 |
| Msa0337540 | Msa1340710 | 0.810944 | 8.958906e-51 | -8.615850e-47 |
| Msa1147900 | Msa1340710 | 0.826502 | 2.619417e-54 | -8.615850e-47 |
| Msa1193290 | Msa1340710 | 0.811696 | 6.153064e-51 | -8.615850e-47 |
| Msa1197590 | Msa1340710 | 0.828131 | 1.066261e-54 | -8.615850e-47 |
| Msa1205960 | Msa1340710 | 0.801322 | 9.510934e-49 | -8.615850e-47 |
| Msa0484780 | Msa1340710 | 0.825445 | 4.668362e-54 | -8.615850e-47 |
| Msa0507680 | Msa1340710 | 0.807742 | 4.357470e-50 | -8.615850e-47 |
| Msa0534590 | Msa1340710 | 0.837803 | 4.190515e-57 | -8.615850e-47 |
| Msa0548620 | Msa1340710 | 0.820783 | 5.714800e-53 | -8.615850e-47 |
| Msa0548660 | Msa1340710 | 0.808754 | 2.651081e-50 | -8.615850e-47 |
| Msa0590800 | Msa1340710 | 0.806824 | 6.820066e-50 | -8.615850e-47 |
| Msa0593650 | Msa1340710 | 0.828758 | 7.523226e-55 | -8.615850e-47 |
| Msa0876580 | Msa1340710 | 0.803665 | 3.128109e-49 | -8.615850e-47 |
| Msa0880140 | Msa1340710 | 0.813652 | 2.297027e-51 | -8.615850e-47 |
| Msa0902760 | Msa1340710 | 0.804953 | 1.686287e-49 | -8.615850e-47 |
| Msa0938220 | Msa1340710 | 0.804439 | 2.159102e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340710 | MtrunA17_Chr2g0296981 | 95.573 | 497 | 22 | 0 | 1 | 497 | 1 | 497 | 0.0 | 918 |
| Msa1340710 | MtrunA17_Chr6g0455291 | 69.880 | 498 | 141 | 4 | 1 | 497 | 5 | 494 | 0.0 | 652 |
| Msa1340710 | MtrunA17_Chr4g0052711 | 46.467 | 467 | 219 | 10 | 43 | 493 | 29 | 480 | 3.88e-139 | 409 |
| Msa1340710 | MtrunA17_Chr2g0297001 | 52.113 | 426 | 184 | 7 | 82 | 493 | 72 | 491 | 8.13e-136 | 401 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340710 | AT4G20050.5 | 61.522 | 460 | 160 | 5 | 38 | 495 | 62 | 506 | 0.0 | 565 |
| Msa1340710 | AT4G20050.7 | 61.522 | 460 | 160 | 5 | 38 | 495 | 37 | 481 | 0.0 | 564 |
| Msa1340710 | AT4G20050.6 | 61.522 | 460 | 160 | 5 | 38 | 495 | 37 | 481 | 0.0 | 564 |
| Msa1340710 | AT4G20050.2 | 61.522 | 460 | 160 | 5 | 38 | 495 | 37 | 481 | 0.0 | 564 |
| Msa1340710 | AT4G20050.1 | 61.522 | 460 | 160 | 5 | 38 | 495 | 37 | 481 | 0.0 | 564 |
| Msa1340710 | AT4G20050.4 | 64.962 | 391 | 127 | 3 | 107 | 495 | 1 | 383 | 0.0 | 515 |
| Msa1340710 | AT4G20050.3 | 64.962 | 391 | 127 | 3 | 107 | 495 | 1 | 383 | 0.0 | 515 |
| Msa1340710 | AT4G20040.1 | 49.173 | 423 | 198 | 4 | 82 | 493 | 67 | 483 | 3.64e-136 | 402 |
Find 98 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTGTAATTGGTGTTTA+TGG | 0.186040 | tig0004309:-56903 | Msa1340710:CDS |
| AACTCTCAAGGACCTCTTAT+TGG | 0.199279 | tig0004309:-55790 | Msa1340710:CDS |
| GTTGTTTGTTTCATTGTAAT+TGG | 0.263362 | tig0004309:-56912 | Msa1340710:CDS |
| TGGTGTACATTGTTACAATA+AGG | 0.274737 | tig0004309:-55475 | Msa1340710:CDS |
| TACAATAAGGCCACTGGATT+CGG | 0.316472 | tig0004309:-55462 | Msa1340710:CDS |
| TGCAACGGGGATGAATTTAA+AGG | 0.328386 | tig0004309:-55148 | Msa1340710:CDS |
| AGGTGTTGAAATTGTTCATT+TGG | 0.332781 | tig0004309:-55226 | Msa1340710:CDS |
| TTATTGGATTCAAACTTTAG+AGG | 0.335089 | tig0004309:-55774 | Msa1340710:CDS |
| AGTTTCTTATGTATGTTTCA+TGG | 0.352507 | tig0004309:+55658 | None:intergenic |
| TTGATCAAGTTATTGTTGAT+AGG | 0.379420 | tig0004309:-55176 | Msa1340710:CDS |
| ATGTTCCCAACGCTGGTTAC+CGG | 0.382500 | tig0004309:+56380 | None:intergenic |
| AGAATCATGTCTTGTTAAAG+AGG | 0.407306 | tig0004309:+56803 | None:intergenic |
| CTCTGCTGCTATAGGAATCA+TGG | 0.408545 | tig0004309:-55523 | Msa1340710:CDS |
| GTTGATAGGAACGTTGCAAC+GGG | 0.411337 | tig0004309:-55162 | Msa1340710:CDS |
| GCCACTGGATTCGGCGGTAC+CGG | 0.416083 | tig0004309:-55453 | Msa1340710:CDS |
| CAGTACTCATTAAGTTCAAC+AGG | 0.423624 | tig0004309:-55030 | Msa1340710:CDS |
| ACATTTCTGATAGCATGATT+AGG | 0.424152 | tig0004309:+54997 | None:intergenic |
| CAGAAAGTCACTCAAGTTAC+CGG | 0.424279 | tig0004309:-56399 | Msa1340710:CDS |
| TCAATGATGTAGCCATCATT+TGG | 0.425679 | tig0004309:+55882 | None:intergenic |
| CTAGAAATATGAAGTTGAAC+AGG | 0.426194 | tig0004309:+55348 | None:intergenic |
| GCTATAGGAATCATGGTAAC+TGG | 0.427357 | tig0004309:-55516 | Msa1340710:CDS |
| ACTTGATCAACTTGATGAAA+AGG | 0.437301 | tig0004309:+55189 | None:intergenic |
| TACATAAGAAACTCTTTCCT+TGG | 0.440272 | tig0004309:-55648 | Msa1340710:CDS |
| ATTTCTAGTAGTTTCTTCCT+TGG | 0.441880 | tig0004309:-55333 | Msa1340710:CDS |
| ATTGTAGATAACATGTTCTC+TGG | 0.444931 | tig0004309:-55258 | Msa1340710:CDS |
| TCCATCAAATATCCTTCGCT+TGG | 0.449157 | tig0004309:+56479 | None:intergenic |
| TGCAAGGGAATGGAACTTCA+TGG | 0.449669 | tig0004309:-55104 | Msa1340710:CDS |
| ATTACACATTTCACAACCAA+TGG | 0.452369 | tig0004309:-55699 | Msa1340710:CDS |
| TCCAAGCGAAGGATATTTGA+TGG | 0.464488 | tig0004309:-56480 | Msa1340710:CDS |
| GTGCTATCTGAATTTCCTGT+AGG | 0.469372 | tig0004309:+56542 | None:intergenic |
| CCTTTCGTGTTTATCGCCTC+CGG | 0.470986 | tig0004309:+55611 | None:intergenic |
| GATGTCACATGGTATACTCT+TGG | 0.471851 | tig0004309:+56578 | None:intergenic |
| CCTACTAGGAAAATTTCTGA+TGG | 0.476121 | tig0004309:-56867 | Msa1340710:CDS |
| ATATCCTTCGCTTGGACCGT+TGG | 0.476727 | tig0004309:+56487 | None:intergenic |
| ACCTCATCAAATGAAAATGA+TGG | 0.476960 | tig0004309:-55852 | Msa1340710:CDS |
| AGTTATGTACTCAAAATTGT+AGG | 0.480837 | tig0004309:+55809 | None:intergenic |
| CGCCTCCGGCGGTTATGTGT+TGG | 0.483145 | tig0004309:+55625 | None:intergenic |
| TAAAGGCTACTGTCGCGAAA+AGG | 0.486640 | tig0004309:-55131 | Msa1340710:CDS |
| TAAAGTTTGAATCCAATAAG+AGG | 0.490425 | tig0004309:+55778 | None:intergenic |
| TGCTATCTGAATTTCCTGTA+GGG | 0.496538 | tig0004309:+56543 | None:intergenic |
| ACCTCAGCTGGCTGAGAAGA+AGG | 0.497308 | tig0004309:+56744 | None:intergenic |
| TGTATGTTTCATGGCCACTT+TGG | 0.501309 | tig0004309:+55667 | None:intergenic |
| AAAAGGTCGTTGCAAGGGAA+TGG | 0.502322 | tig0004309:-55114 | Msa1340710:CDS |
| ATTGTATTATATACCTCAGC+TGG | 0.511049 | tig0004309:+56732 | None:intergenic |
| TCCTGTAGGGTCTGCACCAT+AGG | 0.511417 | tig0004309:+56556 | None:intergenic |
| GGTGCACAAATTAATCTTGA+AGG | 0.512636 | tig0004309:-56437 | Msa1340710:CDS |
| AAGGATTGTGAATTCTTACA+TGG | 0.512683 | tig0004309:-55397 | Msa1340710:CDS |
| ACCGTTGGCTGCATCTGCTA+TGG | 0.521251 | tig0004309:+56502 | None:intergenic |
| CATTGTTACAATAAGGCCAC+TGG | 0.522380 | tig0004309:-55468 | Msa1340710:CDS |
| ATGGAAGGCATCAGTAACCT+TGG | 0.524813 | tig0004309:-56461 | Msa1340710:CDS |
| ACTTTGGACTAAAATTCCAT+TGG | 0.525845 | tig0004309:+55683 | None:intergenic |
| GTCGCGAAAAGGTCGTTGCA+AGG | 0.526188 | tig0004309:-55120 | Msa1340710:CDS |
| TGTTTGTTTCATGCTTCTTG+AGG | 0.528462 | tig0004309:-56934 | Msa1340710:CDS |
| TCAAAATTGTAGGATGATGA+AGG | 0.529691 | tig0004309:+55819 | None:intergenic |
| TCCTTCTTCTCAGCCAGCTG+AGG | 0.533497 | tig0004309:-56745 | Msa1340710:intron |
| AGGTAGTTTCAAATAAATTC+CGG | 0.535034 | tig0004309:+55434 | None:intergenic |
| AAACACGAAAGGAATTTCTC+AGG | 0.538491 | tig0004309:-55600 | Msa1340710:CDS |
| AGTTACCGGTAACCAGCGTT+GGG | 0.539499 | tig0004309:-56385 | Msa1340710:CDS |
| AAGTTACCGGTAACCAGCGT+TGG | 0.543200 | tig0004309:-56386 | Msa1340710:CDS |
| TGGATTCAAACTTTAGAGGA+GGG | 0.543439 | tig0004309:-55770 | Msa1340710:CDS |
| TGACAGCATTATCGTTACCT+TGG | 0.545887 | tig0004309:+55562 | None:intergenic |
| GATTAATTTGTGCACCTCCA+AGG | 0.547641 | tig0004309:+56444 | None:intergenic |
| GATTCAAACTTTAGAGGAGG+GGG | 0.548301 | tig0004309:-55768 | Msa1340710:CDS |
| ATGTTCTCTGGATCAAATCA+AGG | 0.548900 | tig0004309:-55246 | Msa1340710:CDS |
| GTATACCATGTGACATCCTA+TGG | 0.554929 | tig0004309:-56572 | Msa1340710:CDS |
| GCCATAGCAGATGCAGCCAA+CGG | 0.558955 | tig0004309:-56503 | Msa1340710:CDS |
| GCTGGCTGAGAAGAAGGAGA+AGG | 0.560665 | tig0004309:+56750 | None:intergenic |
| GGAATTTATTTGAAACTACC+TGG | 0.560862 | tig0004309:-55432 | Msa1340710:CDS |
| TCCTATGGTGCAGACCCTAC+AGG | 0.561285 | tig0004309:-56557 | Msa1340710:CDS |
| GAAGGTGCAAAAGAAGATGA+TGG | 0.564254 | tig0004309:+56768 | None:intergenic |
| GGATTCAAACTTTAGAGGAG+GGG | 0.565517 | tig0004309:-55769 | Msa1340710:CDS |
| GAAAGGAATTTCTCAGGCAC+AGG | 0.566208 | tig0004309:-55594 | Msa1340710:CDS |
| TGTTGATAGGAACGTTGCAA+CGG | 0.568090 | tig0004309:-55163 | Msa1340710:CDS |
| TTGGATTCAAACTTTAGAGG+AGG | 0.571436 | tig0004309:-55771 | Msa1340710:CDS |
| GCACAAATTAATCTTGAAGG+TGG | 0.580445 | tig0004309:-56434 | Msa1340710:CDS |
| TCGCGAAAAGGTCGTTGCAA+GGG | 0.583554 | tig0004309:-55119 | Msa1340710:CDS |
| TACCATGATGTTCCCAACGC+TGG | 0.586939 | tig0004309:+56373 | None:intergenic |
| AGCGAAGGATATTTGATGGA+AGG | 0.588639 | tig0004309:-56476 | Msa1340710:CDS |
| CTTGGCCAACACATAACCGC+CGG | 0.589091 | tig0004309:-55630 | Msa1340710:CDS |
| GAAGGCATCAGTAACCTTGG+AGG | 0.592934 | tig0004309:-56458 | Msa1340710:CDS |
| ATCCTTGTTTGTGTTAAACC+AGG | 0.593807 | tig0004309:+55414 | None:intergenic |
| CGGCGGTTATGTGTTGGCCA+AGG | 0.595647 | tig0004309:+55631 | None:intergenic |
| AGAGAACATGTTATCTACAA+TGG | 0.597546 | tig0004309:+55260 | None:intergenic |
| TCATGCTATCAGAAATGTGT+CGG | 0.600119 | tig0004309:-54992 | Msa1340710:CDS |
| TCCGGTACCGCCGAATCCAG+TGG | 0.602767 | tig0004309:+55452 | None:intergenic |
| GCAGCCAACGGTCCAAGCGA+AGG | 0.606415 | tig0004309:-56491 | Msa1340710:CDS |
| GGCACAGGAATAAACATCCA+AGG | 0.625123 | tig0004309:-55579 | Msa1340710:CDS |
| AATAAGGCCACTGGATTCGG+CGG | 0.629975 | tig0004309:-55459 | Msa1340710:CDS |
| TACCTGGTTTAACACAAACA+AGG | 0.631189 | tig0004309:-55416 | Msa1340710:CDS |
| AACCAGCGTTGGGAACATCA+TGG | 0.637299 | tig0004309:-56375 | Msa1340710:intron |
| AGCAGAGAAAATTACAACAT+CGG | 0.644559 | tig0004309:+55539 | None:intergenic |
| CTGCACCATAGGATGTCACA+TGG | 0.645840 | tig0004309:+56567 | None:intergenic |
| ATTGTGTTGAAATCTATGAA+AGG | 0.648167 | tig0004309:-55300 | Msa1340710:CDS |
| GGCCAACACATAACCGCCGG+AGG | 0.651132 | tig0004309:-55627 | Msa1340710:CDS |
| TTCGTGTTTATCGCCTCCGG+CGG | 0.651957 | tig0004309:+55614 | None:intergenic |
| CCGGAGGCGATAAACACGAA+AGG | 0.669288 | tig0004309:-55611 | Msa1340710:CDS |
| ACACAATATTCGCATCACCA+AGG | 0.694010 | tig0004309:+55316 | None:intergenic |
| TTGATAGGAACGTTGCAACG+GGG | 0.722305 | tig0004309:-55161 | Msa1340710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTCATACTGTAAAAAAAAA+AGG | + | tig0004309:55636-55655 | None:intergenic | 15.0% |
| !! | AAAACTAATTATTTGACAAT+TGG | - | tig0004309:55675-55694 | Msa1340710:CDS | 15.0% |
| !!! | TTTTTGTTGTTTTAATTTGA+TGG | - | tig0004309:55914-55933 | Msa1340710:CDS | 15.0% |
| !! | TTTCATACTGTAAAAAAAAA+AGG | + | tig0004309:55636-55655 | None:intergenic | 15.0% |
| !! | AAAACTAATTATTTGACAAT+TGG | - | tig0004309:55675-55694 | Msa1340710:CDS | 15.0% |
| !!! | TTTTTGTTGTTTTAATTTGA+TGG | - | tig0004309:55914-55933 | Msa1340710:CDS | 15.0% |
| !!! | TAATTTTAGTAGAGAATACT+AGG | - | tig0004309:55163-55182 | Msa1340710:CDS | 20.0% |
| !! | ACAATAAATATGACAAACTT+AGG | + | tig0004309:55210-55229 | None:intergenic | 20.0% |
| !! | AAGTTTGTCATATTTATTGT+CGG | - | tig0004309:55210-55229 | Msa1340710:CDS | 20.0% |
| !!! | ATAATTAGTTTTTCTACAGT+TGG | + | tig0004309:55667-55686 | None:intergenic | 20.0% |
| !! | ATTGTCTCAAAAATTGAATT+TGG | + | tig0004309:55727-55746 | None:intergenic | 20.0% |
| !!! | TTTAGTATTTTTAGTCATGA+TGG | - | tig0004309:55756-55775 | Msa1340710:CDS | 20.0% |
| !!! | TAATTTTAGTAGAGAATACT+AGG | - | tig0004309:55163-55182 | Msa1340710:CDS | 20.0% |
| !! | ACAATAAATATGACAAACTT+AGG | + | tig0004309:55210-55229 | None:intergenic | 20.0% |
| !! | AAGTTTGTCATATTTATTGT+CGG | - | tig0004309:55210-55229 | Msa1340710:CDS | 20.0% |
| !!! | ATAATTAGTTTTTCTACAGT+TGG | + | tig0004309:55667-55686 | None:intergenic | 20.0% |
| !! | ATTGTCTCAAAAATTGAATT+TGG | + | tig0004309:55727-55746 | None:intergenic | 20.0% |
| !!! | TTTAGTATTTTTAGTCATGA+TGG | - | tig0004309:55756-55775 | Msa1340710:CDS | 20.0% |
| ! | GTTGTTTGTTTCATTGTAAT+TGG | - | tig0004309:54951-54970 | Msa1340710:CDS | 25.0% |
| !! | TTCATTGTAATTGGTGTTTA+TGG | - | tig0004309:54960-54979 | Msa1340710:CDS | 25.0% |
| ! | AAACTTAGGTACAATGTTAT+AGG | + | tig0004309:55196-55215 | None:intergenic | 25.0% |
| !!! | TGATTTTTTTGTTGTTGTGT+AGG | - | tig0004309:55251-55270 | Msa1340710:CDS | 25.0% |
| !!! | GATTTTTTTGTTGTTGTGTA+GGG | - | tig0004309:55252-55271 | Msa1340710:CDS | 25.0% |
| !! | ATAGTCAATTCTCATTTTCT+TGG | + | tig0004309:55804-55823 | None:intergenic | 25.0% |
| !!! | AAAATCATCTGAAGCTTTTA+TGG | + | tig0004309:55961-55980 | None:intergenic | 25.0% |
| ! | AGTTATGTACTCAAAATTGT+AGG | + | tig0004309:56057-56076 | None:intergenic | 25.0% |
| ! | TAAAGTTTGAATCCAATAAG+AGG | + | tig0004309:56088-56107 | None:intergenic | 25.0% |
| ! | TTATTGGATTCAAACTTTAG+AGG | - | tig0004309:56089-56108 | Msa1340710:intron | 25.0% |
| ! | AGTTTCTTATGTATGTTTCA+TGG | + | tig0004309:56208-56227 | None:intergenic | 25.0% |
| ! | AGGTAGTTTCAAATAAATTC+CGG | + | tig0004309:56432-56451 | None:intergenic | 25.0% |
| ! | ATTGTGTTGAAATCTATGAA+AGG | - | tig0004309:56563-56582 | Msa1340710:CDS | 25.0% |
| !!! | TCTATGAAAGGTGTTTTAAA+TGG | - | tig0004309:56575-56594 | Msa1340710:CDS | 25.0% |
| ! | TTGATCAAGTTATTGTTGAT+AGG | - | tig0004309:56687-56706 | Msa1340710:intron | 25.0% |
| !! | TGAACATTTTTGATAAGGTT+AGG | + | tig0004309:56815-56834 | None:intergenic | 25.0% |
| !!! | AGTACTGAACATTTTTGATA+AGG | + | tig0004309:56820-56839 | None:intergenic | 25.0% |
| ! | GTTGTTTGTTTCATTGTAAT+TGG | - | tig0004309:54951-54970 | Msa1340710:CDS | 25.0% |
| !! | TTCATTGTAATTGGTGTTTA+TGG | - | tig0004309:54960-54979 | Msa1340710:CDS | 25.0% |
| ! | AAACTTAGGTACAATGTTAT+AGG | + | tig0004309:55196-55215 | None:intergenic | 25.0% |
| !!! | TGATTTTTTTGTTGTTGTGT+AGG | - | tig0004309:55251-55270 | Msa1340710:CDS | 25.0% |
| !!! | GATTTTTTTGTTGTTGTGTA+GGG | - | tig0004309:55252-55271 | Msa1340710:CDS | 25.0% |
| !! | ATAGTCAATTCTCATTTTCT+TGG | + | tig0004309:55804-55823 | None:intergenic | 25.0% |
| !!! | AAAATCATCTGAAGCTTTTA+TGG | + | tig0004309:55961-55980 | None:intergenic | 25.0% |
| ! | AGTTATGTACTCAAAATTGT+AGG | + | tig0004309:56057-56076 | None:intergenic | 25.0% |
| ! | TAAAGTTTGAATCCAATAAG+AGG | + | tig0004309:56088-56107 | None:intergenic | 25.0% |
| ! | TTATTGGATTCAAACTTTAG+AGG | - | tig0004309:56089-56108 | Msa1340710:intron | 25.0% |
| ! | AGTTTCTTATGTATGTTTCA+TGG | + | tig0004309:56208-56227 | None:intergenic | 25.0% |
| ! | AGGTAGTTTCAAATAAATTC+CGG | + | tig0004309:56432-56451 | None:intergenic | 25.0% |
| ! | ATTGTGTTGAAATCTATGAA+AGG | - | tig0004309:56563-56582 | Msa1340710:CDS | 25.0% |
| !!! | TCTATGAAAGGTGTTTTAAA+TGG | - | tig0004309:56575-56594 | Msa1340710:CDS | 25.0% |
| ! | TTGATCAAGTTATTGTTGAT+AGG | - | tig0004309:56687-56706 | Msa1340710:intron | 25.0% |
| !! | TGAACATTTTTGATAAGGTT+AGG | + | tig0004309:56815-56834 | None:intergenic | 25.0% |
| !!! | AGTACTGAACATTTTTGATA+AGG | + | tig0004309:56820-56839 | None:intergenic | 25.0% |
| GTGACAAAAATTTACCTACT+AGG | - | tig0004309:54982-55001 | Msa1340710:CDS | 30.0% | |
| ! | AGAATCATGTCTTGTTAAAG+AGG | + | tig0004309:55063-55082 | None:intergenic | 30.0% |
| ATTGTATTATATACCTCAGC+TGG | + | tig0004309:55134-55153 | None:intergenic | 30.0% | |
| !!! | GGAAGTGTTTTAAGACTTTA+TGG | - | tig0004309:55696-55715 | Msa1340710:CDS | 30.0% |
| !!! | TGTTTTAAGACTTTATGGCT+AGG | - | tig0004309:55701-55720 | Msa1340710:CDS | 30.0% |
| TTGATGGAAAAACAGATACA+TGG | - | tig0004309:55930-55949 | Msa1340710:intron | 30.0% | |
| ! | TCAGATGATTTTCCAAATGA+TGG | - | tig0004309:55969-55988 | Msa1340710:intron | 30.0% |
| ACCTCATCAAATGAAAATGA+TGG | - | tig0004309:56011-56030 | Msa1340710:intron | 30.0% | |
| ! | TCCATCATTTTCATTTGATG+AGG | + | tig0004309:56015-56034 | None:intergenic | 30.0% |
| TCAAAATTGTAGGATGATGA+AGG | + | tig0004309:56047-56066 | None:intergenic | 30.0% | |
| !! | TTTTGAGTACATAACTCTCA+AGG | - | tig0004309:56061-56080 | Msa1340710:intron | 30.0% |
| ATTACACATTTCACAACCAA+TGG | - | tig0004309:56164-56183 | Msa1340710:intron | 30.0% | |
| ACTTTGGACTAAAATTCCAT+TGG | + | tig0004309:56183-56202 | None:intergenic | 30.0% | |
| !! | AATGGAATTTTAGTCCAAAG+TGG | - | tig0004309:56182-56201 | Msa1340710:intron | 30.0% |
| TACATAAGAAACTCTTTCCT+TGG | - | tig0004309:56215-56234 | Msa1340710:intron | 30.0% | |
| AGCAGAGAAAATTACAACAT+CGG | + | tig0004309:56327-56346 | None:intergenic | 30.0% | |
| TGGTGTACATTGTTACAATA+AGG | - | tig0004309:56388-56407 | Msa1340710:CDS | 30.0% | |
| ! | GGAATTTATTTGAAACTACC+TGG | - | tig0004309:56431-56450 | Msa1340710:CDS | 30.0% |
| AAGGATTGTGAATTCTTACA+TGG | - | tig0004309:56466-56485 | Msa1340710:CDS | 30.0% | |
| CTAGAAATATGAAGTTGAAC+AGG | + | tig0004309:56518-56537 | None:intergenic | 30.0% | |
| !! | ATTTCTAGTAGTTTCTTCCT+TGG | - | tig0004309:56530-56549 | Msa1340710:CDS | 30.0% |
| AGAGAACATGTTATCTACAA+TGG | + | tig0004309:56606-56625 | None:intergenic | 30.0% | |
| ATTGTAGATAACATGTTCTC+TGG | - | tig0004309:56605-56624 | Msa1340710:intron | 30.0% | |
| !! | AGGTGTTGAAATTGTTCATT+TGG | - | tig0004309:56637-56656 | Msa1340710:intron | 30.0% |
| ACTTGATCAACTTGATGAAA+AGG | + | tig0004309:56677-56696 | None:intergenic | 30.0% | |
| ACATTTCTGATAGCATGATT+AGG | + | tig0004309:56869-56888 | None:intergenic | 30.0% | |
| GTGACAAAAATTTACCTACT+AGG | - | tig0004309:54982-55001 | Msa1340710:CDS | 30.0% | |
| ! | AGAATCATGTCTTGTTAAAG+AGG | + | tig0004309:55063-55082 | None:intergenic | 30.0% |
| ATTGTATTATATACCTCAGC+TGG | + | tig0004309:55134-55153 | None:intergenic | 30.0% | |
| !!! | GGAAGTGTTTTAAGACTTTA+TGG | - | tig0004309:55696-55715 | Msa1340710:CDS | 30.0% |
| !!! | TGTTTTAAGACTTTATGGCT+AGG | - | tig0004309:55701-55720 | Msa1340710:CDS | 30.0% |
| TTGATGGAAAAACAGATACA+TGG | - | tig0004309:55930-55949 | Msa1340710:intron | 30.0% | |
| ! | TCAGATGATTTTCCAAATGA+TGG | - | tig0004309:55969-55988 | Msa1340710:intron | 30.0% |
| ACCTCATCAAATGAAAATGA+TGG | - | tig0004309:56011-56030 | Msa1340710:intron | 30.0% | |
| ! | TCCATCATTTTCATTTGATG+AGG | + | tig0004309:56015-56034 | None:intergenic | 30.0% |
| TCAAAATTGTAGGATGATGA+AGG | + | tig0004309:56047-56066 | None:intergenic | 30.0% | |
| !! | TTTTGAGTACATAACTCTCA+AGG | - | tig0004309:56061-56080 | Msa1340710:intron | 30.0% |
| ATTACACATTTCACAACCAA+TGG | - | tig0004309:56164-56183 | Msa1340710:intron | 30.0% | |
| ACTTTGGACTAAAATTCCAT+TGG | + | tig0004309:56183-56202 | None:intergenic | 30.0% | |
| !! | AATGGAATTTTAGTCCAAAG+TGG | - | tig0004309:56182-56201 | Msa1340710:intron | 30.0% |
| TACATAAGAAACTCTTTCCT+TGG | - | tig0004309:56215-56234 | Msa1340710:intron | 30.0% | |
| AGCAGAGAAAATTACAACAT+CGG | + | tig0004309:56327-56346 | None:intergenic | 30.0% | |
| TGGTGTACATTGTTACAATA+AGG | - | tig0004309:56388-56407 | Msa1340710:CDS | 30.0% | |
| ! | GGAATTTATTTGAAACTACC+TGG | - | tig0004309:56431-56450 | Msa1340710:CDS | 30.0% |
| AAGGATTGTGAATTCTTACA+TGG | - | tig0004309:56466-56485 | Msa1340710:CDS | 30.0% | |
| CTAGAAATATGAAGTTGAAC+AGG | + | tig0004309:56518-56537 | None:intergenic | 30.0% | |
| !! | ATTTCTAGTAGTTTCTTCCT+TGG | - | tig0004309:56530-56549 | Msa1340710:CDS | 30.0% |
| AGAGAACATGTTATCTACAA+TGG | + | tig0004309:56606-56625 | None:intergenic | 30.0% | |
| ATTGTAGATAACATGTTCTC+TGG | - | tig0004309:56605-56624 | Msa1340710:intron | 30.0% | |
| !! | AGGTGTTGAAATTGTTCATT+TGG | - | tig0004309:56637-56656 | Msa1340710:intron | 30.0% |
| ACTTGATCAACTTGATGAAA+AGG | + | tig0004309:56677-56696 | None:intergenic | 30.0% | |
| ACATTTCTGATAGCATGATT+AGG | + | tig0004309:56869-56888 | None:intergenic | 30.0% | |
| TGTTTGTTTCATGCTTCTTG+AGG | - | tig0004309:54929-54948 | Msa1340710:CDS | 35.0% | |
| ! | CCATCAGAAATTTTCCTAGT+AGG | + | tig0004309:54999-55018 | None:intergenic | 35.0% |
| CCTACTAGGAAAATTTCTGA+TGG | - | tig0004309:54996-55015 | Msa1340710:CDS | 35.0% | |
| TGCTATCTGAATTTCCTGTA+GGG | + | tig0004309:55323-55342 | None:intergenic | 35.0% | |
| GGTGCACAAATTAATCTTGA+AGG | - | tig0004309:55426-55445 | Msa1340710:CDS | 35.0% | |
| GCACAAATTAATCTTGAAGG+TGG | - | tig0004309:55429-55448 | Msa1340710:CDS | 35.0% | |
| AGCAAATGAAACAATTTCGC+AGG | + | tig0004309:55518-55537 | None:intergenic | 35.0% | |
| ATGGAAAAACAGATACATGG+AGG | - | tig0004309:55933-55952 | Msa1340710:intron | 35.0% | |
| TCAATGATGTAGCCATCATT+TGG | + | tig0004309:55984-56003 | None:intergenic | 35.0% | |
| ! | TTGGATTCAAACTTTAGAGG+AGG | - | tig0004309:56092-56111 | Msa1340710:intron | 35.0% |
| ! | TGGATTCAAACTTTAGAGGA+GGG | - | tig0004309:56093-56112 | Msa1340710:intron | 35.0% |
| AAACACGAAAGGAATTTCTC+AGG | - | tig0004309:56263-56282 | Msa1340710:intron | 35.0% | |
| ! | GTAATTTTCTCTGCTGCTAT+AGG | - | tig0004309:56332-56351 | Msa1340710:intron | 35.0% |
| TACCTGGTTTAACACAAACA+AGG | - | tig0004309:56447-56466 | Msa1340710:CDS | 35.0% | |
| ! | ATCCTTGTTTGTGTTAAACC+AGG | + | tig0004309:56452-56471 | None:intergenic | 35.0% |
| ATGTTCTCTGGATCAAATCA+AGG | - | tig0004309:56617-56636 | Msa1340710:intron | 35.0% | |
| CAGTACTCATTAAGTTCAAC+AGG | - | tig0004309:56833-56852 | Msa1340710:CDS | 35.0% | |
| TCATGCTATCAGAAATGTGT+CGG | - | tig0004309:56871-56890 | Msa1340710:CDS | 35.0% | |
| TGTTTGTTTCATGCTTCTTG+AGG | - | tig0004309:54929-54948 | Msa1340710:CDS | 35.0% | |
| ! | CCATCAGAAATTTTCCTAGT+AGG | + | tig0004309:54999-55018 | None:intergenic | 35.0% |
| CCTACTAGGAAAATTTCTGA+TGG | - | tig0004309:54996-55015 | Msa1340710:CDS | 35.0% | |
| TGCTATCTGAATTTCCTGTA+GGG | + | tig0004309:55323-55342 | None:intergenic | 35.0% | |
| GGTGCACAAATTAATCTTGA+AGG | - | tig0004309:55426-55445 | Msa1340710:CDS | 35.0% | |
| GCACAAATTAATCTTGAAGG+TGG | - | tig0004309:55429-55448 | Msa1340710:CDS | 35.0% | |
| AGCAAATGAAACAATTTCGC+AGG | + | tig0004309:55518-55537 | None:intergenic | 35.0% | |
| ATGGAAAAACAGATACATGG+AGG | - | tig0004309:55933-55952 | Msa1340710:intron | 35.0% | |
| TCAATGATGTAGCCATCATT+TGG | + | tig0004309:55984-56003 | None:intergenic | 35.0% | |
| ! | TTGGATTCAAACTTTAGAGG+AGG | - | tig0004309:56092-56111 | Msa1340710:intron | 35.0% |
| ! | TGGATTCAAACTTTAGAGGA+GGG | - | tig0004309:56093-56112 | Msa1340710:intron | 35.0% |
| AAACACGAAAGGAATTTCTC+AGG | - | tig0004309:56263-56282 | Msa1340710:intron | 35.0% | |
| ! | GTAATTTTCTCTGCTGCTAT+AGG | - | tig0004309:56332-56351 | Msa1340710:intron | 35.0% |
| TACCTGGTTTAACACAAACA+AGG | - | tig0004309:56447-56466 | Msa1340710:CDS | 35.0% | |
| ! | ATCCTTGTTTGTGTTAAACC+AGG | + | tig0004309:56452-56471 | None:intergenic | 35.0% |
| ATGTTCTCTGGATCAAATCA+AGG | - | tig0004309:56617-56636 | Msa1340710:intron | 35.0% | |
| CAGTACTCATTAAGTTCAAC+AGG | - | tig0004309:56833-56852 | Msa1340710:CDS | 35.0% | |
| TCATGCTATCAGAAATGTGT+CGG | - | tig0004309:56871-56890 | Msa1340710:CDS | 35.0% | |
| ! | GAAGGTGCAAAAGAAGATGA+TGG | + | tig0004309:55098-55117 | None:intergenic | 40.0% |
| GATGTCACATGGTATACTCT+TGG | + | tig0004309:55288-55307 | None:intergenic | 40.0% | |
| GTATACCATGTGACATCCTA+TGG | - | tig0004309:55291-55310 | Msa1340710:CDS | 40.0% | |
| GTGCTATCTGAATTTCCTGT+AGG | + | tig0004309:55324-55343 | None:intergenic | 40.0% | |
| TCCAAGCGAAGGATATTTGA+TGG | - | tig0004309:55383-55402 | Msa1340710:CDS | 40.0% | |
| TCCATCAAATATCCTTCGCT+TGG | + | tig0004309:55387-55406 | None:intergenic | 40.0% | |
| AGCGAAGGATATTTGATGGA+AGG | - | tig0004309:55387-55406 | Msa1340710:CDS | 40.0% | |
| !! | GATTAATTTGTGCACCTCCA+AGG | + | tig0004309:55422-55441 | None:intergenic | 40.0% |
| CAGAAAGTCACTCAAGTTAC+CGG | - | tig0004309:55464-55483 | Msa1340710:CDS | 40.0% | |
| ! | ACTGTAGAAACTGATTCTCG+AGG | - | tig0004309:55580-55599 | Msa1340710:CDS | 40.0% |
| ! | AGTCATGATGGTGAAGTAGT+TGG | - | tig0004309:55768-55787 | Msa1340710:CDS | 40.0% |
| AACTCTCAAGGACCTCTTAT+TGG | - | tig0004309:56073-56092 | Msa1340710:intron | 40.0% | |
| ! | GGATTCAAACTTTAGAGGAG+GGG | - | tig0004309:56094-56113 | Msa1340710:intron | 40.0% |
| ! | GATTCAAACTTTAGAGGAGG+GGG | - | tig0004309:56095-56114 | Msa1340710:intron | 40.0% |
| TGTATGTTTCATGGCCACTT+TGG | + | tig0004309:56199-56218 | None:intergenic | 40.0% | |
| TGACAGCATTATCGTTACCT+TGG | + | tig0004309:56304-56323 | None:intergenic | 40.0% | |
| GCTATAGGAATCATGGTAAC+TGG | - | tig0004309:56347-56366 | Msa1340710:intron | 40.0% | |
| ! | GGTCAAGCAAACACATTTTC+TGG | - | tig0004309:56368-56387 | Msa1340710:intron | 40.0% |
| CATTGTTACAATAAGGCCAC+TGG | - | tig0004309:56395-56414 | Msa1340710:CDS | 40.0% | |
| TACAATAAGGCCACTGGATT+CGG | - | tig0004309:56401-56420 | Msa1340710:CDS | 40.0% | |
| ACACAATATTCGCATCACCA+AGG | + | tig0004309:56550-56569 | None:intergenic | 40.0% | |
| ! | TGTTGATAGGAACGTTGCAA+CGG | - | tig0004309:56700-56719 | Msa1340710:intron | 40.0% |
| TGCAACGGGGATGAATTTAA+AGG | - | tig0004309:56715-56734 | Msa1340710:intron | 40.0% | |
| ! | GAAGGTGCAAAAGAAGATGA+TGG | + | tig0004309:55098-55117 | None:intergenic | 40.0% |
| GATGTCACATGGTATACTCT+TGG | + | tig0004309:55288-55307 | None:intergenic | 40.0% | |
| GTATACCATGTGACATCCTA+TGG | - | tig0004309:55291-55310 | Msa1340710:CDS | 40.0% | |
| GTGCTATCTGAATTTCCTGT+AGG | + | tig0004309:55324-55343 | None:intergenic | 40.0% | |
| TCCAAGCGAAGGATATTTGA+TGG | - | tig0004309:55383-55402 | Msa1340710:CDS | 40.0% | |
| TCCATCAAATATCCTTCGCT+TGG | + | tig0004309:55387-55406 | None:intergenic | 40.0% | |
| AGCGAAGGATATTTGATGGA+AGG | - | tig0004309:55387-55406 | Msa1340710:CDS | 40.0% | |
| !! | GATTAATTTGTGCACCTCCA+AGG | + | tig0004309:55422-55441 | None:intergenic | 40.0% |
| CAGAAAGTCACTCAAGTTAC+CGG | - | tig0004309:55464-55483 | Msa1340710:CDS | 40.0% | |
| ! | ACTGTAGAAACTGATTCTCG+AGG | - | tig0004309:55580-55599 | Msa1340710:CDS | 40.0% |
| ! | AGTCATGATGGTGAAGTAGT+TGG | - | tig0004309:55768-55787 | Msa1340710:CDS | 40.0% |
| AACTCTCAAGGACCTCTTAT+TGG | - | tig0004309:56073-56092 | Msa1340710:intron | 40.0% | |
| ! | GGATTCAAACTTTAGAGGAG+GGG | - | tig0004309:56094-56113 | Msa1340710:intron | 40.0% |
| ! | GATTCAAACTTTAGAGGAGG+GGG | - | tig0004309:56095-56114 | Msa1340710:intron | 40.0% |
| TGTATGTTTCATGGCCACTT+TGG | + | tig0004309:56199-56218 | None:intergenic | 40.0% | |
| TGACAGCATTATCGTTACCT+TGG | + | tig0004309:56304-56323 | None:intergenic | 40.0% | |
| GCTATAGGAATCATGGTAAC+TGG | - | tig0004309:56347-56366 | Msa1340710:intron | 40.0% | |
| ! | GGTCAAGCAAACACATTTTC+TGG | - | tig0004309:56368-56387 | Msa1340710:intron | 40.0% |
| CATTGTTACAATAAGGCCAC+TGG | - | tig0004309:56395-56414 | Msa1340710:CDS | 40.0% | |
| TACAATAAGGCCACTGGATT+CGG | - | tig0004309:56401-56420 | Msa1340710:CDS | 40.0% | |
| ACACAATATTCGCATCACCA+AGG | + | tig0004309:56550-56569 | None:intergenic | 40.0% | |
| ! | TGTTGATAGGAACGTTGCAA+CGG | - | tig0004309:56700-56719 | Msa1340710:intron | 40.0% |
| TGCAACGGGGATGAATTTAA+AGG | - | tig0004309:56715-56734 | Msa1340710:intron | 40.0% | |
| !! | ATGGAAGGCATCAGTAACCT+TGG | - | tig0004309:55402-55421 | Msa1340710:CDS | 45.0% |
| GAAAGGAATTTCTCAGGCAC+AGG | - | tig0004309:56269-56288 | Msa1340710:intron | 45.0% | |
| GGCACAGGAATAAACATCCA+AGG | - | tig0004309:56284-56303 | Msa1340710:intron | 45.0% | |
| CTCTGCTGCTATAGGAATCA+TGG | - | tig0004309:56340-56359 | Msa1340710:intron | 45.0% | |
| ! | GTTGATAGGAACGTTGCAAC+GGG | - | tig0004309:56701-56720 | Msa1340710:intron | 45.0% |
| TTGATAGGAACGTTGCAACG+GGG | - | tig0004309:56702-56721 | Msa1340710:intron | 45.0% | |
| TAAAGGCTACTGTCGCGAAA+AGG | - | tig0004309:56732-56751 | Msa1340710:intron | 45.0% | |
| AAAAGGTCGTTGCAAGGGAA+TGG | - | tig0004309:56749-56768 | Msa1340710:CDS | 45.0% | |
| TGCAAGGGAATGGAACTTCA+TGG | - | tig0004309:56759-56778 | Msa1340710:CDS | 45.0% | |
| !! | TGCTGCGAATGTTTTTGTCG+CGG | - | tig0004309:56928-56947 | Msa1340710:CDS | 45.0% |
| !! | ATGGAAGGCATCAGTAACCT+TGG | - | tig0004309:55402-55421 | Msa1340710:CDS | 45.0% |
| GAAAGGAATTTCTCAGGCAC+AGG | - | tig0004309:56269-56288 | Msa1340710:intron | 45.0% | |
| GGCACAGGAATAAACATCCA+AGG | - | tig0004309:56284-56303 | Msa1340710:intron | 45.0% | |
| CTCTGCTGCTATAGGAATCA+TGG | - | tig0004309:56340-56359 | Msa1340710:intron | 45.0% | |
| ! | GTTGATAGGAACGTTGCAAC+GGG | - | tig0004309:56701-56720 | Msa1340710:intron | 45.0% |
| TTGATAGGAACGTTGCAACG+GGG | - | tig0004309:56702-56721 | Msa1340710:intron | 45.0% | |
| TAAAGGCTACTGTCGCGAAA+AGG | - | tig0004309:56732-56751 | Msa1340710:intron | 45.0% | |
| AAAAGGTCGTTGCAAGGGAA+TGG | - | tig0004309:56749-56768 | Msa1340710:CDS | 45.0% | |
| TGCAAGGGAATGGAACTTCA+TGG | - | tig0004309:56759-56778 | Msa1340710:CDS | 45.0% | |
| !! | TGCTGCGAATGTTTTTGTCG+CGG | - | tig0004309:56928-56947 | Msa1340710:CDS | 45.0% |
| CTGCACCATAGGATGTCACA+TGG | + | tig0004309:55299-55318 | None:intergenic | 50.0% | |
| ATATCCTTCGCTTGGACCGT+TGG | + | tig0004309:55379-55398 | None:intergenic | 50.0% | |
| !! | GAAGGCATCAGTAACCTTGG+AGG | - | tig0004309:55405-55424 | Msa1340710:CDS | 50.0% |
| AAGTTACCGGTAACCAGCGT+TGG | - | tig0004309:55477-55496 | Msa1340710:CDS | 50.0% | |
| AGTTACCGGTAACCAGCGTT+GGG | - | tig0004309:55478-55497 | Msa1340710:CDS | 50.0% | |
| ! | ATGTTCCCAACGCTGGTTAC+CGG | + | tig0004309:55486-55505 | None:intergenic | 50.0% |
| ! | AACCAGCGTTGGGAACATCA+TGG | - | tig0004309:55488-55507 | Msa1340710:CDS | 50.0% |
| TACCATGATGTTCCCAACGC+TGG | + | tig0004309:55493-55512 | None:intergenic | 50.0% | |
| CCTTTCGTGTTTATCGCCTC+CGG | + | tig0004309:56255-56274 | None:intergenic | 50.0% | |
| AATAAGGCCACTGGATTCGG+CGG | - | tig0004309:56404-56423 | Msa1340710:CDS | 50.0% | |
| TCGCGAAAAGGTCGTTGCAA+GGG | - | tig0004309:56744-56763 | Msa1340710:intron | 50.0% | |
| !! | TGCGAATGTTTTTGTCGCGG+TGG | - | tig0004309:56931-56950 | Msa1340710:CDS | 50.0% |
| CTGCACCATAGGATGTCACA+TGG | + | tig0004309:55299-55318 | None:intergenic | 50.0% | |
| ATATCCTTCGCTTGGACCGT+TGG | + | tig0004309:55379-55398 | None:intergenic | 50.0% | |
| !! | GAAGGCATCAGTAACCTTGG+AGG | - | tig0004309:55405-55424 | Msa1340710:CDS | 50.0% |
| AAGTTACCGGTAACCAGCGT+TGG | - | tig0004309:55477-55496 | Msa1340710:CDS | 50.0% | |
| AGTTACCGGTAACCAGCGTT+GGG | - | tig0004309:55478-55497 | Msa1340710:CDS | 50.0% | |
| ! | ATGTTCCCAACGCTGGTTAC+CGG | + | tig0004309:55486-55505 | None:intergenic | 50.0% |
| ! | AACCAGCGTTGGGAACATCA+TGG | - | tig0004309:55488-55507 | Msa1340710:CDS | 50.0% |
| TACCATGATGTTCCCAACGC+TGG | + | tig0004309:55493-55512 | None:intergenic | 50.0% | |
| CCTTTCGTGTTTATCGCCTC+CGG | + | tig0004309:56255-56274 | None:intergenic | 50.0% | |
| AATAAGGCCACTGGATTCGG+CGG | - | tig0004309:56404-56423 | Msa1340710:CDS | 50.0% | |
| TCGCGAAAAGGTCGTTGCAA+GGG | - | tig0004309:56744-56763 | Msa1340710:intron | 50.0% | |
| !! | TGCGAATGTTTTTGTCGCGG+TGG | - | tig0004309:56931-56950 | Msa1340710:CDS | 50.0% |
| GCTGGCTGAGAAGAAGGAGA+AGG | + | tig0004309:55116-55135 | None:intergenic | 55.0% | |
| TCCTTCTTCTCAGCCAGCTG+AGG | - | tig0004309:55118-55137 | Msa1340710:CDS | 55.0% | |
| ACCTCAGCTGGCTGAGAAGA+AGG | + | tig0004309:55122-55141 | None:intergenic | 55.0% | |
| TCCTATGGTGCAGACCCTAC+AGG | - | tig0004309:55306-55325 | Msa1340710:CDS | 55.0% | |
| TCCTGTAGGGTCTGCACCAT+AGG | + | tig0004309:55310-55329 | None:intergenic | 55.0% | |
| GCCATAGCAGATGCAGCCAA+CGG | - | tig0004309:55360-55379 | Msa1340710:CDS | 55.0% | |
| ! | ACCGTTGGCTGCATCTGCTA+TGG | + | tig0004309:55364-55383 | None:intergenic | 55.0% |
| CTTGGCCAACACATAACCGC+CGG | - | tig0004309:56233-56252 | Msa1340710:intron | 55.0% | |
| TTCGTGTTTATCGCCTCCGG+CGG | + | tig0004309:56252-56271 | None:intergenic | 55.0% | |
| CCGGAGGCGATAAACACGAA+AGG | - | tig0004309:56252-56271 | Msa1340710:intron | 55.0% | |
| GTCGCGAAAAGGTCGTTGCA+AGG | - | tig0004309:56743-56762 | Msa1340710:intron | 55.0% | |
| GCTGGCTGAGAAGAAGGAGA+AGG | + | tig0004309:55116-55135 | None:intergenic | 55.0% | |
| TCCTTCTTCTCAGCCAGCTG+AGG | - | tig0004309:55118-55137 | Msa1340710:CDS | 55.0% | |
| ACCTCAGCTGGCTGAGAAGA+AGG | + | tig0004309:55122-55141 | None:intergenic | 55.0% | |
| TCCTATGGTGCAGACCCTAC+AGG | - | tig0004309:55306-55325 | Msa1340710:CDS | 55.0% | |
| TCCTGTAGGGTCTGCACCAT+AGG | + | tig0004309:55310-55329 | None:intergenic | 55.0% | |
| GCCATAGCAGATGCAGCCAA+CGG | - | tig0004309:55360-55379 | Msa1340710:CDS | 55.0% | |
| ! | ACCGTTGGCTGCATCTGCTA+TGG | + | tig0004309:55364-55383 | None:intergenic | 55.0% |
| CTTGGCCAACACATAACCGC+CGG | - | tig0004309:56233-56252 | Msa1340710:intron | 55.0% | |
| TTCGTGTTTATCGCCTCCGG+CGG | + | tig0004309:56252-56271 | None:intergenic | 55.0% | |
| CCGGAGGCGATAAACACGAA+AGG | - | tig0004309:56252-56271 | Msa1340710:intron | 55.0% | |
| GTCGCGAAAAGGTCGTTGCA+AGG | - | tig0004309:56743-56762 | Msa1340710:intron | 55.0% | |
| ! | CGGCGGTTATGTGTTGGCCA+AGG | + | tig0004309:56235-56254 | None:intergenic | 60.0% |
| ! | CGGCGGTTATGTGTTGGCCA+AGG | + | tig0004309:56235-56254 | None:intergenic | 60.0% |
| GCAGCCAACGGTCCAAGCGA+AGG | - | tig0004309:55372-55391 | Msa1340710:CDS | 65.0% | |
| GGCCAACACATAACCGCCGG+AGG | - | tig0004309:56236-56255 | Msa1340710:intron | 65.0% | |
| CGCCTCCGGCGGTTATGTGT+TGG | + | tig0004309:56241-56260 | None:intergenic | 65.0% | |
| GCCACTGGATTCGGCGGTAC+CGG | - | tig0004309:56410-56429 | Msa1340710:CDS | 65.0% | |
| TCCGGTACCGCCGAATCCAG+TGG | + | tig0004309:56414-56433 | None:intergenic | 65.0% | |
| GCAGCCAACGGTCCAAGCGA+AGG | - | tig0004309:55372-55391 | Msa1340710:CDS | 65.0% | |
| GGCCAACACATAACCGCCGG+AGG | - | tig0004309:56236-56255 | Msa1340710:intron | 65.0% | |
| CGCCTCCGGCGGTTATGTGT+TGG | + | tig0004309:56241-56260 | None:intergenic | 65.0% | |
| GCCACTGGATTCGGCGGTAC+CGG | - | tig0004309:56410-56429 | Msa1340710:CDS | 65.0% | |
| TCCGGTACCGCCGAATCCAG+TGG | + | tig0004309:56414-56433 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0004309 | gene | 54912 | 56973 | 54912 | ID=Msa1340710;Name=Msa1340710 |
| tig0004309 | mRNA | 54912 | 56973 | 54912 | ID=Msa1340710-mRNA-1;Parent=Msa1340710;Name=Msa1340710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.33|1|1|1|3|0|497 |
| tig0004309 | exon | 56746 | 56973 | 56746 | ID=Msa1340710-mRNA-1:exon:2794;Parent=Msa1340710-mRNA-1 |
| tig0004309 | exon | 56376 | 56612 | 56376 | ID=Msa1340710-mRNA-1:exon:2793;Parent=Msa1340710-mRNA-1 |
| tig0004309 | exon | 54912 | 55940 | 54912 | ID=Msa1340710-mRNA-1:exon:2792;Parent=Msa1340710-mRNA-1 |
| tig0004309 | CDS | 56746 | 56973 | 56746 | ID=Msa1340710-mRNA-1:cds;Parent=Msa1340710-mRNA-1 |
| tig0004309 | CDS | 56376 | 56612 | 56376 | ID=Msa1340710-mRNA-1:cds;Parent=Msa1340710-mRNA-1 |
| tig0004309 | CDS | 54912 | 55940 | 54912 | ID=Msa1340710-mRNA-1:cds;Parent=Msa1340710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
