AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0968050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968050 MtrunA17_Chr2g0333851 95.639 321 5 5 1 317 1 316 0.0 614
Msa0968050 MtrunA17_Chr4g0001361 59.202 326 108 8 5 317 4 317 2.18e-105 310
Msa0968050 MtrunA17_Chr1g0150281 46.643 283 127 7 41 314 9 276 1.71e-71 223
Msa0968050 MtrunA17_Chr3g0136961 46.182 275 115 7 56 314 29 286 6.86e-69 216
Msa0968050 MtrunA17_Chr1g0150271 36.567 268 134 7 51 316 6 239 1.09e-39 140
Msa0968050 MtrunA17_Chr7g0270831 27.586 319 146 8 57 310 100 398 5.94e-30 118
Msa0968050 MtrunA17_Chr4g0075201 30.357 224 113 5 49 236 116 332 1.02e-27 112
Msa0968050 MtrunA17_Chr2g0288871 32.911 237 95 8 49 231 139 365 3.58e-26 108
Msa0968050 MtrunA17_Chr3g0099641 30.870 230 110 6 47 231 86 311 3.56e-24 102
Msa0968050 MtrunA17_Chr2g0302391 31.579 266 123 8 55 275 70 321 1.13e-23 100
Msa0968050 MtrunA17_Chr4g0051181 53.086 81 33 2 151 231 228 303 1.17e-23 100
Msa0968050 MtrunA17_Chr7g0216891 47.619 84 42 1 146 229 196 277 1.22e-22 98.2
Msa0968050 MtrunA17_Chr4g0060271 51.250 80 37 1 152 231 238 315 1.38e-22 98.2
Msa0968050 MtrunA17_Chr7g0270191 50.617 81 37 2 151 231 127 204 2.91e-22 94.7
Msa0968050 MtrunA17_Chr1g0194481 54.545 77 32 2 156 232 145 218 3.28e-22 95.1
Msa0968050 MtrunA17_Chr2g0294231 53.086 81 35 2 156 236 190 267 9.33e-22 94.4
Msa0968050 MtrunA17_Chr4g0051881 51.948 77 34 2 156 232 165 238 1.67e-21 93.2
Msa0968050 MtrunA17_Chr4g0025051 50.000 78 37 1 155 232 321 396 3.29e-21 94.0
Msa0968050 MtrunA17_Chr2g0322391 31.048 248 89 9 56 231 172 409 1.57e-20 92.0
Msa0968050 MtrunA17_Chr1g0188941 41.667 96 40 2 137 232 32 111 1.79e-20 85.1
Msa0968050 MtrunA17_Chr5g0445311 57.812 64 26 1 169 232 362 424 4.44e-20 90.5
Msa0968050 MtrunA17_Chr5g0445311 46.269 67 31 3 172 238 201 262 1.18e-11 65.5
Msa0968050 MtrunA17_Chr4g0025061 35.000 140 58 3 155 263 346 483 4.57e-20 90.9
Msa0968050 MtrunA17_Chr4g0004911 40.909 110 49 2 122 231 302 395 5.44e-20 90.1
Msa0968050 MtrunA17_Chr4g0004911 49.231 65 32 1 171 235 184 247 3.46e-16 79.0
Msa0968050 MtrunA17_Chr7g0263531 52.857 70 32 1 162 231 352 420 7.06e-20 89.7
Msa0968050 MtrunA17_Chr7g0263531 53.333 60 26 2 172 231 190 247 9.65e-15 74.3
Msa0968050 MtrunA17_Chr5g0418191 54.688 64 28 1 169 232 318 380 8.24e-20 89.4
Msa0968050 MtrunA17_Chr5g0418191 45.455 77 32 4 172 246 152 220 5.88e-13 68.9
Msa0968050 MtrunA17_Chr3g0101131 57.812 64 26 1 169 232 413 475 8.78e-20 89.7
Msa0968050 MtrunA17_Chr3g0101131 48.333 60 29 2 172 231 244 301 1.45e-11 65.1
Msa0968050 MtrunA17_Chr4g0042831 42.056 107 46 3 137 243 259 349 9.48e-20 89.0
Msa0968050 MtrunA17_Chr4g0042831 48.529 68 34 1 172 239 146 212 3.40e-13 69.7
Msa0968050 MtrunA17_Chr5g0443131 50.649 77 35 2 156 232 144 217 1.14e-19 87.8
Msa0968050 MtrunA17_Chr1g0150801 50.667 75 34 2 156 230 89 160 3.23e-19 83.2
Msa0968050 MtrunA17_Chr3g0079691 41.667 96 40 2 137 232 476 555 4.92e-19 87.8
Msa0968050 MtrunA17_Chr3g0079691 49.180 61 29 2 171 231 280 338 2.23e-12 67.8
Msa0968050 MtrunA17_Chr5g0432161 40.741 108 48 3 125 232 390 481 5.90e-19 87.4
Msa0968050 MtrunA17_Chr5g0432161 50.794 63 29 2 172 234 245 305 3.87e-14 72.8
Msa0968050 MtrunA17_Chr7g0218081 56.667 60 25 1 169 228 408 466 5.99e-19 87.4
Msa0968050 MtrunA17_Chr7g0218081 43.373 83 43 3 172 252 229 309 5.03e-12 66.6
Msa0968050 MtrunA17_Chr7g0243891 35.075 134 64 4 126 252 344 461 7.76e-19 87.0
Msa0968050 MtrunA17_Chr7g0243891 45.714 70 36 2 171 240 216 283 2.55e-14 73.6
Msa0968050 MtrunA17_Chr5g0401821 40.385 104 55 2 125 228 160 256 8.15e-19 84.7
Msa0968050 MtrunA17_Chr8g0383351 49.315 73 35 2 156 228 146 216 9.31e-19 83.6
Msa0968050 MtrunA17_Chr5g0418781 50.685 73 33 2 156 228 111 180 1.01e-18 84.3
Msa0968050 MtrunA17_Chr7g0224801 38.095 126 64 3 115 229 28 150 1.45e-18 81.6
Msa0968050 MtrunA17_Chr7g0249311 44.545 110 54 4 126 232 347 452 1.57e-18 86.3
Msa0968050 MtrunA17_Chr7g0249311 49.231 65 29 3 171 233 179 241 9.82e-12 65.9
Msa0968050 MtrunA17_Chr7g0248721 51.282 78 34 3 152 229 124 197 1.97e-18 82.4
Msa0968050 MtrunA17_Chr7g0249301 43.750 96 51 3 139 232 258 352 3.77e-18 84.3
Msa0968050 MtrunA17_Chr7g0249301 46.774 62 31 2 170 231 61 120 4.19e-11 63.2
Msa0968050 MtrunA17_Chr1g0147881 44.048 84 43 1 149 228 236 319 4.02e-18 83.6
Msa0968050 MtrunA17_Chr4g0068541 49.351 77 36 2 155 231 194 267 4.26e-18 84.3
Msa0968050 MtrunA17_Chr3g0129321 30.570 193 110 6 88 273 30 205 4.38e-18 81.3
Msa0968050 MtrunA17_Chr3g0106491 39.091 110 51 3 123 232 332 425 4.86e-18 84.3
Msa0968050 MtrunA17_Chr3g0106491 50.000 60 28 2 172 231 199 256 4.71e-14 72.4
Msa0968050 MtrunA17_Chr8g0386241 44.872 78 42 1 169 246 101 177 6.32e-18 80.1
Msa0968050 MtrunA17_Chr4g0053281 56.140 57 25 0 172 228 267 323 9.99e-18 82.4
Msa0968050 MtrunA17_Chr5g0447701 50.000 78 36 2 155 232 238 312 1.09e-17 82.8
Msa0968050 MtrunA17_Chr3g0129361 47.945 73 35 2 156 228 131 200 1.99e-17 79.7
Msa0968050 MtrunA17_Chr8g0383251 47.368 76 37 2 156 231 95 167 6.32e-17 77.4
Msa0968050 MtrunA17_Chr8g0335811 39.130 115 60 4 115 228 105 210 7.52e-17 78.2
Msa0968050 MtrunA17_Chr2g0293481 43.038 79 45 0 168 246 264 342 9.32e-17 80.5
Msa0968050 MtrunA17_Chr1g0184691 51.667 60 29 0 169 228 291 350 1.20e-16 79.7
Msa0968050 MtrunA17_Chr7g0270051 35.238 105 65 1 135 239 20 121 1.42e-16 78.2
Msa0968050 MtrunA17_Chr7g0238921 45.333 75 30 2 172 236 125 198 4.28e-16 77.4
Msa0968050 MtrunA17_Chr4g0071521 45.570 79 42 1 151 228 224 302 5.39e-16 77.4
Msa0968050 MtrunA17_Chr8g0379461 34.821 112 72 1 140 250 45 156 7.24e-16 75.9
Msa0968050 MtrunA17_Chr8g0387501 46.774 62 33 0 172 233 130 191 1.10e-15 75.9
Msa0968050 MtrunA17_Chr7g0228941 43.939 66 37 0 163 228 44 109 1.22e-15 72.4
Msa0968050 MtrunA17_Chr8g0348311 37.895 95 53 2 172 266 156 244 1.35e-15 76.3
Msa0968050 MtrunA17_Chr4g0024391 38.462 78 46 1 155 232 215 290 4.96e-15 75.5
Msa0968050 MtrunA17_Chr3g0139021 31.818 110 58 2 124 228 274 371 5.56e-15 75.1
Msa0968050 MtrunA17_Chr4g0074001 43.836 73 40 1 159 231 347 418 5.70e-15 75.5
Msa0968050 MtrunA17_Chr7g0248691 43.077 65 37 0 169 233 152 216 9.39e-15 73.9
Msa0968050 MtrunA17_Chr2g0284321 45.000 60 33 0 172 231 36 95 3.84e-14 70.5
Msa0968050 MtrunA17_Chr1g0189391 32.800 125 70 5 111 228 37 154 6.26e-14 71.6
Msa0968050 MtrunA17_Chr2g0289181 45.161 62 34 0 171 232 14 75 6.81e-14 70.1
Msa0968050 MtrunA17_Chr6g0485431 38.202 89 50 4 149 235 133 218 1.25e-13 70.9
Msa0968050 MtrunA17_Chr2g0319961 36.364 110 66 2 125 231 32 140 1.27e-13 69.7
Msa0968050 MtrunA17_Chr5g0432071 43.284 67 36 2 172 238 105 169 2.48e-13 68.2
Msa0968050 MtrunA17_Chr1g0202461 43.548 62 35 0 172 233 262 323 8.11e-13 68.6
Msa0968050 MtrunA17_Chr5g0447711 38.667 75 45 1 158 232 217 290 2.09e-12 66.6
Msa0968050 MtrunA17_Chr8g0387981 47.059 68 32 2 163 226 122 189 7.15e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0968050 AT1G80840.1 53.776 331 106 12 1 317 1 298 2.23e-99 295
Msa0968050 AT4G31800.1 45.238 336 135 10 1 316 1 307 1.63e-79 244
Msa0968050 AT4G31800.2 47.328 262 99 7 74 316 1 242 2.64e-68 213
Msa0968050 AT2G25000.2 45.283 265 95 7 57 314 2 223 1.69e-63 201
Msa0968050 AT2G25000.4 45.283 265 95 7 57 314 2 223 1.69e-63 201
Msa0968050 AT2G25000.1 44.364 275 103 7 49 316 37 268 2.14e-63 202
Msa0968050 AT2G25000.3 43.599 289 110 8 33 314 3 245 5.49e-63 200
Msa0968050 AT4G31800.3 46.053 228 88 8 1 208 1 213 1.46e-49 165
Msa0968050 AT5G41570.1 48.936 94 44 3 136 229 66 155 2.70e-23 95.1
Msa0968050 AT4G18170.1 47.525 101 49 3 133 232 135 232 6.71e-23 97.1
Msa0968050 AT4G01720.1 24.857 350 153 8 60 310 105 443 6.95e-23 99.0
Msa0968050 AT1G64000.1 52.632 76 33 2 154 229 99 171 8.41e-23 94.0
Msa0968050 AT4G04450.2 39.252 107 56 1 125 231 161 258 9.12e-23 98.2
Msa0968050 AT1G68150.1 51.852 81 34 2 151 231 220 295 1.22e-22 97.4
Msa0968050 AT4G22070.4 50.000 84 37 2 148 231 279 357 1.72e-22 98.2
Msa0968050 AT4G22070.3 50.000 84 37 2 148 231 279 357 1.72e-22 98.2
Msa0968050 AT4G22070.2 50.000 84 37 2 148 231 279 357 1.72e-22 98.2
Msa0968050 AT4G22070.1 50.000 84 37 2 148 231 279 357 1.72e-22 98.2
Msa0968050 AT4G04450.1 39.252 107 56 1 125 231 255 352 2.76e-22 97.4
Msa0968050 AT1G29860.1 52.439 82 36 2 156 237 123 201 2.82e-22 94.7
Msa0968050 AT1G62300.1 50.000 84 37 2 148 231 294 372 4.26e-22 97.1
Msa0968050 AT4G26640.5 31.527 203 121 5 113 310 144 333 7.66e-22 95.1
Msa0968050 AT4G26640.5 43.662 71 38 2 161 231 25 93 3.36e-12 67.0
Msa0968050 AT4G26640.6 31.527 203 121 5 113 310 144 333 7.66e-22 95.1
Msa0968050 AT4G26640.6 43.662 71 38 2 161 231 25 93 3.36e-12 67.0
Msa0968050 AT4G26640.4 31.527 203 121 5 113 310 144 333 7.66e-22 95.1
Msa0968050 AT4G26640.4 43.662 71 38 2 161 231 25 93 3.36e-12 67.0
Msa0968050 AT4G26640.3 31.527 203 121 5 113 310 144 333 7.66e-22 95.1
Msa0968050 AT4G26640.3 43.662 71 38 2 161 231 25 93 3.36e-12 67.0
Msa0968050 AT5G15130.1 38.793 116 55 3 121 231 183 287 1.19e-21 95.9
Msa0968050 AT5G15130.2 38.793 116 55 3 121 231 141 245 1.21e-21 95.5
Msa0968050 AT1G18860.1 58.065 62 26 0 170 231 238 299 1.77e-21 95.1
Msa0968050 AT4G26640.1 31.527 203 121 5 113 310 248 437 1.83e-21 94.7
Msa0968050 AT4G26640.1 43.662 71 38 2 161 231 129 197 3.59e-12 67.4
Msa0968050 AT4G26640.7 31.527 203 121 5 113 310 280 469 2.62e-21 94.7
Msa0968050 AT4G26640.7 43.662 71 38 2 161 231 161 229 3.79e-12 67.4
Msa0968050 AT4G26640.2 31.527 203 121 5 113 310 320 509 2.86e-21 94.7
Msa0968050 AT4G26640.2 43.662 71 38 2 161 231 201 269 3.86e-12 67.4
Msa0968050 AT5G07100.2 38.983 118 56 3 115 232 100 201 3.03e-21 90.5
Msa0968050 AT5G07100.2 45.455 77 41 1 159 235 12 87 3.44e-16 76.6
Msa0968050 AT5G07100.4 38.983 118 56 3 115 232 100 201 3.03e-21 90.5
Msa0968050 AT5G07100.4 45.455 77 41 1 159 235 12 87 3.44e-16 76.6
Msa0968050 AT5G07100.5 38.983 118 56 3 115 232 100 201 3.03e-21 90.5
Msa0968050 AT5G07100.5 45.455 77 41 1 159 235 12 87 3.44e-16 76.6
Msa0968050 AT5G07100.3 38.983 118 56 3 115 232 100 201 3.03e-21 90.5
Msa0968050 AT5G07100.3 45.455 77 41 1 159 235 12 87 3.44e-16 76.6
Msa0968050 AT2G47260.1 50.000 86 40 2 151 236 156 238 5.04e-21 92.4
Msa0968050 AT5G49520.1 51.948 77 34 2 155 231 207 280 5.90e-21 92.8
Msa0968050 AT5G07100.1 33.987 153 80 4 85 232 158 294 6.94e-21 91.3
Msa0968050 AT5G07100.1 45.455 77 41 1 159 235 105 180 1.14e-15 76.6
Msa0968050 AT3G62340.1 51.163 86 39 2 151 236 100 182 9.45e-21 90.5
Msa0968050 AT2G21900.1 45.000 100 47 3 134 232 77 169 1.30e-20 88.6
Msa0968050 AT5G26170.1 53.425 73 31 2 156 228 100 169 1.90e-20 87.0
Msa0968050 AT1G13960.1 34.694 147 68 3 101 247 366 484 2.13e-20 92.0
Msa0968050 AT1G13960.1 50.746 67 31 2 172 238 230 294 2.28e-13 70.9
Msa0968050 AT1G13960.2 34.694 147 68 3 101 247 213 331 3.99e-20 90.1
Msa0968050 AT1G13960.2 50.746 67 31 2 172 238 77 141 2.63e-13 70.1
Msa0968050 AT5G46350.1 40.476 126 54 6 156 280 170 275 4.28e-20 89.4
Msa0968050 AT1G69310.4 50.000 78 36 2 151 228 129 203 5.00e-20 88.6
Msa0968050 AT1G69310.2 50.000 78 36 2 151 228 129 203 5.00e-20 88.6
Msa0968050 AT1G69310.1 50.000 78 36 2 151 228 129 203 5.00e-20 88.6
Msa0968050 AT5G56270.1 44.000 100 40 3 133 232 464 547 7.68e-20 90.5
Msa0968050 AT5G56270.1 44.737 76 36 3 170 245 272 341 1.56e-12 68.6
Msa0968050 AT2G03340.1 56.250 64 27 1 169 232 413 475 9.23e-20 90.1
Msa0968050 AT2G03340.1 47.222 72 36 2 172 243 251 320 4.33e-14 73.2
Msa0968050 AT5G13080.1 50.000 80 37 2 156 235 54 130 1.67e-19 84.0
Msa0968050 AT1G55600.1 50.000 80 37 2 152 231 290 366 2.19e-19 89.0
Msa0968050 AT1G69810.1 29.365 252 113 8 43 231 15 264 1.10e-18 86.3
Msa0968050 AT3G01080.2 55.556 63 27 1 169 231 342 403 1.14e-18 86.7
Msa0968050 AT3G01080.1 56.667 60 25 1 169 228 304 362 1.30e-18 86.3
Msa0968050 AT2G30250.1 48.276 87 42 2 146 232 305 388 3.20e-18 84.7
Msa0968050 AT2G30250.1 35.577 104 52 4 172 262 167 268 1.15e-12 68.6
Msa0968050 AT5G52830.1 42.045 88 51 0 172 259 166 253 3.94e-18 84.3
Msa0968050 AT5G64810.1 37.931 116 67 3 113 228 56 166 4.41e-18 81.3
Msa0968050 AT3G01970.1 51.351 74 33 2 155 228 51 121 6.09e-18 79.7
Msa0968050 AT1G69810.2 48.750 80 38 2 153 231 129 206 8.49e-18 83.2
Msa0968050 AT2G23320.1 39.683 126 62 4 103 228 186 297 1.15e-17 82.4
Msa0968050 AT4G39410.1 45.783 83 42 2 146 228 200 279 1.43e-17 82.0
Msa0968050 AT2G46130.1 48.101 79 38 2 151 229 12 87 1.59e-17 77.4
Msa0968050 AT2G04880.1 50.704 71 34 1 169 239 305 374 1.85e-17 83.2
Msa0968050 AT2G04880.1 41.026 78 43 3 169 245 109 184 1.53e-12 68.6
Msa0968050 AT2G04880.2 50.704 71 34 1 169 239 281 350 2.06e-17 82.8
Msa0968050 AT2G04880.2 41.026 78 43 3 169 245 109 184 1.54e-12 68.2
Msa0968050 AT2G38470.1 53.125 64 29 1 169 232 360 422 2.82e-17 82.8
Msa0968050 AT2G38470.1 50.820 61 28 2 171 231 184 242 3.34e-14 73.6
Msa0968050 AT4G26440.1 54.688 64 28 1 169 232 370 432 3.85e-17 82.4
Msa0968050 AT4G26440.1 34.259 108 60 4 172 279 179 275 1.50e-11 65.5
Msa0968050 AT2G30590.1 51.515 66 31 1 169 233 311 376 4.55e-17 81.3
Msa0968050 AT4G31550.2 51.667 60 29 0 169 228 243 302 4.95e-17 80.9
Msa0968050 AT4G31550.1 51.667 60 29 0 169 228 244 303 5.30e-17 80.9
Msa0968050 AT2G44745.1 38.655 119 68 4 120 236 95 210 5.32e-17 79.0
Msa0968050 AT5G43290.1 42.857 84 46 2 145 228 89 170 6.95e-17 79.7
Msa0968050 AT1G29280.1 50.000 60 30 0 172 231 75 134 6.98e-17 79.3
Msa0968050 AT2G34830.1 35.043 117 70 1 123 233 161 277 7.98e-17 80.9
Msa0968050 AT2G34830.2 35.043 117 70 1 123 233 170 286 9.41e-17 80.9
Msa0968050 AT3G04670.1 51.667 60 29 0 169 228 260 319 3.06e-16 78.6
Msa0968050 AT4G01250.1 35.714 98 63 0 172 269 129 226 3.43e-16 78.2
Msa0968050 AT4G24240.1 44.304 79 43 1 151 228 260 338 4.25e-16 78.6
Msa0968050 AT1G69310.3 48.718 78 33 3 151 228 129 199 4.72e-16 77.4
Msa0968050 AT2G37260.3 37.500 120 64 3 113 228 213 325 5.28e-16 78.2
Msa0968050 AT2G37260.3 48.000 75 37 2 158 232 72 144 3.75e-14 72.8
Msa0968050 AT2G37260.2 37.500 120 64 3 113 228 211 323 5.36e-16 78.2
Msa0968050 AT2G37260.2 48.000 75 37 2 158 232 70 142 3.92e-14 72.4
Msa0968050 AT2G37260.1 37.037 135 69 4 113 238 293 420 7.97e-16 78.2
Msa0968050 AT2G37260.1 48.000 75 37 2 158 232 152 224 4.25e-14 72.8
Msa0968050 AT5G28650.1 51.667 60 29 0 169 228 260 319 8.05e-16 77.4
Msa0968050 AT1G30650.1 45.714 70 38 0 164 233 210 279 8.46e-16 78.2
Msa0968050 AT2G24570.1 50.000 60 30 0 169 228 241 300 1.41e-15 76.6
Msa0968050 AT4G23550.1 31.507 146 88 4 169 314 138 271 2.12e-15 75.9
Msa0968050 AT3G58710.2 40.323 124 64 3 129 245 24 144 2.17e-15 75.5
Msa0968050 AT3G58710.1 40.000 125 64 3 129 245 24 145 3.09e-15 75.1
Msa0968050 AT4G30935.1 42.466 73 41 1 159 231 319 390 4.74e-15 75.9
Msa0968050 AT5G45050.2 36.667 120 67 2 172 282 1153 1272 9.57e-15 75.5
Msa0968050 AT5G45050.4 49.180 61 31 0 172 232 1042 1102 9.85e-15 75.5
Msa0968050 AT5G45050.1 36.667 120 67 2 172 282 1181 1300 9.97e-15 75.5
Msa0968050 AT2G46130.2 46.835 79 35 3 151 229 12 83 1.19e-13 66.6
Msa0968050 AT2G46400.1 41.096 73 39 2 156 226 91 161 9.02e-12 65.1
Msa0968050 AT5G45260.1 37.975 79 47 1 172 248 1209 1287 1.57e-11 65.9
Msa0968050 AT3G01080.3 40.000 75 43 2 172 246 206 278 7.53e-11 62.8

Find 64 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCTGTGGTACTTCCATTT+TGG 0.140306 6_3:-98184711 None:intergenic
GTTGCTTTGTTTAGAAATTT+TGG 0.157085 6_3:-98185096 None:intergenic
AATGGAAGTACCACAGATTT+TGG 0.248540 6_3:+98184715 Msa0968050:CDS
TCATATTTCTTGAAACTTAC+AGG 0.248763 6_3:-98183734 None:intergenic
GCACTTGCTGCTGCCATATC+AGG 0.283466 6_3:+98184785 Msa0968050:CDS
AATCTAATGGGAGGAGTAAC+TGG 0.300205 6_3:+98184123 Msa0968050:CDS
GGATATCAGTGGAGAAAATA+TGG 0.332364 6_3:+98184392 Msa0968050:CDS
TGAATAATTTATTTGACATA+TGG 0.338190 6_3:+98183637 Msa0968050:exon
AAGGTTCTACTGGACTAATT+TGG 0.339982 6_3:-98184604 None:intergenic
GATGATAAATAATCCCAAAA+TGG 0.343074 6_3:+98184697 Msa0968050:CDS
TTTATCATCATATTCTTAGA+AGG 0.347068 6_3:-98184683 None:intergenic
AATAGTAGAAACTTGCATTA+AGG 0.347618 6_3:+98184203 Msa0968050:CDS
CAAGTACAGTTACACTTGAT+TGG 0.350481 6_3:+98184636 Msa0968050:CDS
AAGCAGCAGTAACAATCTAA+TGG 0.359770 6_3:+98184110 Msa0968050:CDS
AAGTCAAGTGTTCTATAAAC+AGG 0.402811 6_3:+98184853 Msa0968050:three_prime_UTR
TTCTTCTTCACTGTGCAGCT+TGG 0.402986 6_3:-98184473 None:intergenic
TTCCTACAACGATTGTTTGT+CGG 0.422479 6_3:-98184581 None:intergenic
CAAGTTTCTACTATTTGCCT+TGG 0.425526 6_3:-98184195 None:intergenic
GGGCTTTGCTCCTTATGATC+AGG 0.429712 6_3:-98184060 None:intergenic
GAGAAAGAATCCTGATCATA+AGG 0.436763 6_3:+98184050 Msa0968050:CDS
AGCAGCAGTAACAATCTAAT+GGG 0.440609 6_3:+98184111 Msa0968050:CDS
TCAGTCAAGTGGTGCCTTGG+TGG 0.446693 6_3:+98183924 Msa0968050:intron
TTGAAGTATGCTCTTGGAGA+TGG 0.459401 6_3:-98184437 None:intergenic
ATCATGGATTAACACTTCCT+TGG 0.460598 6_3:+98183670 Msa0968050:CDS
GTGGAGAAAATATGGACAAA+AGG 0.461765 6_3:+98184400 Msa0968050:CDS
AGCAAGGAAAAGAACTAGCT+TGG 0.467320 6_3:+98185040 Msa0968050:three_prime_UTR
GAGCATTTGAAGTATGCTCT+TGG 0.467728 6_3:-98184443 None:intergenic
CAATCAAGTGTAACTGTACT+TGG 0.475314 6_3:-98184635 None:intergenic
AGCAAAGCCCATCTCAGAAA+AGG 0.487615 6_3:+98184073 Msa0968050:CDS
GTCAAGTGGTGCCTTGGTGG+AGG 0.490012 6_3:+98183927 Msa0968050:intron
CTACTTAATGAATCAAAATG+AGG 0.491460 6_3:-98184942 None:intergenic
TGCTCTGAAGTTAAGATCCT+TGG 0.493603 6_3:-98184762 None:intergenic
TGTAAGTTTCAAGAAATATG+AGG 0.514508 6_3:+98183736 Msa0968050:CDS
TCATCCTCATCCTTCTCAAA+CGG 0.516116 6_3:+98184556 Msa0968050:CDS
GGTGCAGAAGAAGGTTCTAC+TGG 0.520924 6_3:-98184614 None:intergenic
GCAGAAAACAAGAAGTTGAC+AGG 0.521855 6_3:+98183967 Msa0968050:CDS
ACTGTACTTGGTGCAGAAGA+AGG 0.524453 6_3:-98184623 None:intergenic
TATGTTGCAACCACAACTGA+TGG 0.530178 6_3:-98184518 None:intergenic
CACATTGAGAAACAATCTGA+TGG 0.530744 6_3:+98184020 Msa0968050:CDS
TTCTTAGAAGGTGCAGAAGA+AGG 0.543973 6_3:-98184671 None:intergenic
CAACATTAATCCACGCAGTA+GGG 0.544477 6_3:+98183697 Msa0968050:CDS
TCAACATTAATCCACGCAGT+AGG 0.551260 6_3:+98183696 Msa0968050:CDS
GTTGTGGTTGCAACATATGA+AGG 0.552701 6_3:+98184524 Msa0968050:CDS
AGCCGACAAACAATCGTTGT+AGG 0.557166 6_3:+98184579 Msa0968050:CDS
TATATCTTCTGCAAAAGAAG+AGG 0.565925 6_3:+98183790 Msa0968050:CDS
TTTGTCGGCTCCGTTTGAGA+AGG 0.566050 6_3:-98184566 None:intergenic
GGAAAAGAACTAGCTTGGAT+AGG 0.582825 6_3:+98185045 Msa0968050:three_prime_UTR
AAATACAACATAGAGAAAGT+AGG 0.586245 6_3:+98184913 Msa0968050:three_prime_UTR
TGGATTAATGTTGAGATCCA+AGG 0.586656 6_3:-98183687 None:intergenic
GAAGAAGGTGCAAAGAAGTG+TGG 0.601905 6_3:+98184490 Msa0968050:CDS
ATATGGACAAAAGGTGACAA+GGG 0.608161 6_3:+98184409 Msa0968050:CDS
ATCAATCATGCAAGAAACCA+AGG 0.612418 6_3:+98184178 Msa0968050:CDS
AATATGGACAAAAGGTGACA+AGG 0.623618 6_3:+98184408 Msa0968050:CDS
ATCTGTTCCACCAAAATCTG+TGG 0.633715 6_3:-98184725 None:intergenic
GGCTCCGTTTGAGAAGGATG+AGG 0.643319 6_3:-98184560 None:intergenic
TTGTGAAAGATGGATATCAG+TGG 0.648462 6_3:+98184381 Msa0968050:CDS
TGTGGATGATCCATCAGTTG+TGG 0.652865 6_3:+98184508 Msa0968050:CDS
AGCAGTAACAATCTAATGGG+AGG 0.658927 6_3:+98184114 Msa0968050:CDS
TATTTCTTGAAACTTACAGG+AGG 0.662658 6_3:-98183731 None:intergenic
AAGCTGCACAGTGAAGAAGA+AGG 0.665099 6_3:+98184475 Msa0968050:CDS
AAGTTTCAAGAAATATGAGG+TGG 0.669513 6_3:+98183739 Msa0968050:CDS
GATGGCTACTTCATTGACCA+AGG 0.672567 6_3:+98184745 Msa0968050:CDS
TGTTCATGAACCCTACTGCG+TGG 0.674456 6_3:-98183707 None:intergenic
TCGTTTCAGCTCCTCCACCA+AGG 0.688042 6_3:-98183938 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAATAATTTATTTGACATA+TGG + chr6_3:98183637-98183656 Msa0968050:exon 15.0%
!!! AAAACAATTTTTTCTCATTA+GGG + chr6_3:98183762-98183781 Msa0968050:CDS 15.0%
!! TGAATAATTTATTTGACATA+TGG + chr6_3:98183637-98183656 Msa0968050:exon 15.0%
!!! AAAACAATTTTTTCTCATTA+GGG + chr6_3:98183762-98183781 Msa0968050:CDS 15.0%
!!! GAAAACAATTTTTTCTCATT+AGG + chr6_3:98183761-98183780 Msa0968050:CDS 20.0%
!! TTTATCATCATATTCTTAGA+AGG - chr6_3:98184686-98184705 None:intergenic 20.0%
!!! TTTTCTACTTGAACTAATTT+TGG - chr6_3:98184823-98184842 None:intergenic 20.0%
!! TTTGCAAAAACATAAACAAT+TGG - chr6_3:98184984-98185003 None:intergenic 20.0%
!!! GAAAACAATTTTTTCTCATT+AGG + chr6_3:98183761-98183780 Msa0968050:CDS 20.0%
!! TTTATCATCATATTCTTAGA+AGG - chr6_3:98184686-98184705 None:intergenic 20.0%
!!! TTTTCTACTTGAACTAATTT+TGG - chr6_3:98184823-98184842 None:intergenic 20.0%
!! TTTGCAAAAACATAAACAAT+TGG - chr6_3:98184984-98185003 None:intergenic 20.0%
!! ATATGGATTTTTCATCATCA+TGG + chr6_3:98183654-98183673 Msa0968050:exon 25.0%
! TCATATTTCTTGAAACTTAC+AGG - chr6_3:98183737-98183756 None:intergenic 25.0%
! TGTAAGTTTCAAGAAATATG+AGG + chr6_3:98183736-98183755 Msa0968050:CDS 25.0%
!! TATTGATATTTTCAGTCAAG+TGG + chr6_3:98183913-98183932 Msa0968050:intron 25.0%
! AATAGTAGAAACTTGCATTA+AGG + chr6_3:98184203-98184222 Msa0968050:CDS 25.0%
! GAAGAAAAATGAATCTTACA+AGG - chr6_3:98184275-98184294 None:intergenic 25.0%
!! TATTTTCAGATTGTGAAAGA+TGG + chr6_3:98184371-98184390 Msa0968050:intron 25.0%
! GATGATAAATAATCCCAAAA+TGG + chr6_3:98184697-98184716 Msa0968050:CDS 25.0%
!!! AACAGGTCATTTTTAAAACA+TGG + chr6_3:98184870-98184889 Msa0968050:three_prime_UTR 25.0%
!!! TCATTTTTAAAACATGGCAT+AGG + chr6_3:98184876-98184895 Msa0968050:three_prime_UTR 25.0%
! AAATACAACATAGAGAAAGT+AGG + chr6_3:98184913-98184932 Msa0968050:three_prime_UTR 25.0%
! CTACTTAATGAATCAAAATG+AGG - chr6_3:98184945-98184964 None:intergenic 25.0%
!!! CTCATTTTGATTCATTAAGT+AGG + chr6_3:98184943-98184962 Msa0968050:three_prime_UTR 25.0%
!!! TGTTTATGTTTTTGCAAATC+TGG + chr6_3:98184986-98185005 Msa0968050:three_prime_UTR 25.0%
!!! TATATCTTTTTCATCAAGCA+AGG + chr6_3:98185024-98185043 Msa0968050:three_prime_UTR 25.0%
!!! GTTGCTTTGTTTAGAAATTT+TGG - chr6_3:98185099-98185118 None:intergenic 25.0%
!! ATATGGATTTTTCATCATCA+TGG + chr6_3:98183654-98183673 Msa0968050:exon 25.0%
! TCATATTTCTTGAAACTTAC+AGG - chr6_3:98183737-98183756 None:intergenic 25.0%
! TGTAAGTTTCAAGAAATATG+AGG + chr6_3:98183736-98183755 Msa0968050:CDS 25.0%
!! TATTGATATTTTCAGTCAAG+TGG + chr6_3:98183913-98183932 Msa0968050:intron 25.0%
! AATAGTAGAAACTTGCATTA+AGG + chr6_3:98184203-98184222 Msa0968050:CDS 25.0%
! GAAGAAAAATGAATCTTACA+AGG - chr6_3:98184275-98184294 None:intergenic 25.0%
!! TATTTTCAGATTGTGAAAGA+TGG + chr6_3:98184371-98184390 Msa0968050:intron 25.0%
! GATGATAAATAATCCCAAAA+TGG + chr6_3:98184697-98184716 Msa0968050:CDS 25.0%
!!! AACAGGTCATTTTTAAAACA+TGG + chr6_3:98184870-98184889 Msa0968050:three_prime_UTR 25.0%
!!! TCATTTTTAAAACATGGCAT+AGG + chr6_3:98184876-98184895 Msa0968050:three_prime_UTR 25.0%
! AAATACAACATAGAGAAAGT+AGG + chr6_3:98184913-98184932 Msa0968050:three_prime_UTR 25.0%
! CTACTTAATGAATCAAAATG+AGG - chr6_3:98184945-98184964 None:intergenic 25.0%
!!! CTCATTTTGATTCATTAAGT+AGG + chr6_3:98184943-98184962 Msa0968050:three_prime_UTR 25.0%
!!! TGTTTATGTTTTTGCAAATC+TGG + chr6_3:98184986-98185005 Msa0968050:three_prime_UTR 25.0%
!!! TATATCTTTTTCATCAAGCA+AGG + chr6_3:98185024-98185043 Msa0968050:three_prime_UTR 25.0%
!!! GTTGCTTTGTTTAGAAATTT+TGG - chr6_3:98185099-98185118 None:intergenic 25.0%
TATTTCTTGAAACTTACAGG+AGG - chr6_3:98183734-98183753 None:intergenic 30.0%
AAGTTTCAAGAAATATGAGG+TGG + chr6_3:98183739-98183758 Msa0968050:CDS 30.0%
TATATCTTCTGCAAAAGAAG+AGG + chr6_3:98183790-98183809 Msa0968050:CDS 30.0%
AAAGAAGAGGTAAGTTAGTT+TGG + chr6_3:98183803-98183822 Msa0968050:intron 30.0%
ATTTGCAAAGCCATTTCATT+AGG + chr6_3:98184302-98184321 Msa0968050:intron 30.0%
AGTCATACAACCTAATGAAA+TGG - chr6_3:98184315-98184334 None:intergenic 30.0%
! GTGTAACATTTTTCCTGATA+TGG - chr6_3:98184801-98184820 None:intergenic 30.0%
AAGTCAAGTGTTCTATAAAC+AGG + chr6_3:98184853-98184872 Msa0968050:three_prime_UTR 30.0%
TATTTCTTGAAACTTACAGG+AGG - chr6_3:98183734-98183753 None:intergenic 30.0%
AAGTTTCAAGAAATATGAGG+TGG + chr6_3:98183739-98183758 Msa0968050:CDS 30.0%
TATATCTTCTGCAAAAGAAG+AGG + chr6_3:98183790-98183809 Msa0968050:CDS 30.0%
AAAGAAGAGGTAAGTTAGTT+TGG + chr6_3:98183803-98183822 Msa0968050:intron 30.0%
ATTTGCAAAGCCATTTCATT+AGG + chr6_3:98184302-98184321 Msa0968050:intron 30.0%
AGTCATACAACCTAATGAAA+TGG - chr6_3:98184315-98184334 None:intergenic 30.0%
! GTGTAACATTTTTCCTGATA+TGG - chr6_3:98184801-98184820 None:intergenic 30.0%
AAGTCAAGTGTTCTATAAAC+AGG + chr6_3:98184853-98184872 Msa0968050:three_prime_UTR 30.0%
! ATCATGGATTAACACTTCCT+TGG + chr6_3:98183670-98183689 Msa0968050:CDS 35.0%
TGGATTAATGTTGAGATCCA+AGG - chr6_3:98183690-98183709 None:intergenic 35.0%
CACATTGAGAAACAATCTGA+TGG + chr6_3:98184020-98184039 Msa0968050:CDS 35.0%
GAGAAAGAATCCTGATCATA+AGG + chr6_3:98184050-98184069 Msa0968050:CDS 35.0%
!!! CAGATTTCCTTTTCTGAGAT+GGG - chr6_3:98184083-98184102 None:intergenic 35.0%
!! TCAGATTTCCTTTTCTGAGA+TGG - chr6_3:98184084-98184103 None:intergenic 35.0%
AAGCAGCAGTAACAATCTAA+TGG + chr6_3:98184110-98184129 Msa0968050:CDS 35.0%
AGCAGCAGTAACAATCTAAT+GGG + chr6_3:98184111-98184130 Msa0968050:CDS 35.0%
ATCAATCATGCAAGAAACCA+AGG + chr6_3:98184178-98184197 Msa0968050:CDS 35.0%
CAAGTTTCTACTATTTGCCT+TGG - chr6_3:98184198-98184217 None:intergenic 35.0%
TTGTGAAAGATGGATATCAG+TGG + chr6_3:98184381-98184400 Msa0968050:CDS 35.0%
GGATATCAGTGGAGAAAATA+TGG + chr6_3:98184392-98184411 Msa0968050:CDS 35.0%
GTGGAGAAAATATGGACAAA+AGG + chr6_3:98184400-98184419 Msa0968050:CDS 35.0%
AATATGGACAAAAGGTGACA+AGG + chr6_3:98184408-98184427 Msa0968050:CDS 35.0%
ATATGGACAAAAGGTGACAA+GGG + chr6_3:98184409-98184428 Msa0968050:CDS 35.0%
TTCCTACAACGATTGTTTGT+CGG - chr6_3:98184584-98184603 None:intergenic 35.0%
AAGGTTCTACTGGACTAATT+TGG - chr6_3:98184607-98184626 None:intergenic 35.0%
CAATCAAGTGTAACTGTACT+TGG - chr6_3:98184638-98184657 None:intergenic 35.0%
CAAGTACAGTTACACTTGAT+TGG + chr6_3:98184636-98184655 Msa0968050:CDS 35.0%
! ATCTGTGGTACTTCCATTTT+GGG - chr6_3:98184713-98184732 None:intergenic 35.0%
! AATCTGTGGTACTTCCATTT+TGG - chr6_3:98184714-98184733 None:intergenic 35.0%
!!! AATGGAAGTACCACAGATTT+TGG + chr6_3:98184715-98184734 Msa0968050:CDS 35.0%
AAGAAGATGAAGTCTTTGTG+TGG - chr6_3:98183572-98183591 None:intergenic 35.0%
! ATCATGGATTAACACTTCCT+TGG + chr6_3:98183670-98183689 Msa0968050:CDS 35.0%
TGGATTAATGTTGAGATCCA+AGG - chr6_3:98183690-98183709 None:intergenic 35.0%
CACATTGAGAAACAATCTGA+TGG + chr6_3:98184020-98184039 Msa0968050:CDS 35.0%
GAGAAAGAATCCTGATCATA+AGG + chr6_3:98184050-98184069 Msa0968050:CDS 35.0%
!!! CAGATTTCCTTTTCTGAGAT+GGG - chr6_3:98184083-98184102 None:intergenic 35.0%
!! TCAGATTTCCTTTTCTGAGA+TGG - chr6_3:98184084-98184103 None:intergenic 35.0%
AAGCAGCAGTAACAATCTAA+TGG + chr6_3:98184110-98184129 Msa0968050:CDS 35.0%
AGCAGCAGTAACAATCTAAT+GGG + chr6_3:98184111-98184130 Msa0968050:CDS 35.0%
ATCAATCATGCAAGAAACCA+AGG + chr6_3:98184178-98184197 Msa0968050:CDS 35.0%
CAAGTTTCTACTATTTGCCT+TGG - chr6_3:98184198-98184217 None:intergenic 35.0%
TTGTGAAAGATGGATATCAG+TGG + chr6_3:98184381-98184400 Msa0968050:CDS 35.0%
GGATATCAGTGGAGAAAATA+TGG + chr6_3:98184392-98184411 Msa0968050:CDS 35.0%
GTGGAGAAAATATGGACAAA+AGG + chr6_3:98184400-98184419 Msa0968050:CDS 35.0%
AATATGGACAAAAGGTGACA+AGG + chr6_3:98184408-98184427 Msa0968050:CDS 35.0%
ATATGGACAAAAGGTGACAA+GGG + chr6_3:98184409-98184428 Msa0968050:CDS 35.0%
TTCCTACAACGATTGTTTGT+CGG - chr6_3:98184584-98184603 None:intergenic 35.0%
AAGGTTCTACTGGACTAATT+TGG - chr6_3:98184607-98184626 None:intergenic 35.0%
CAATCAAGTGTAACTGTACT+TGG - chr6_3:98184638-98184657 None:intergenic 35.0%
CAAGTACAGTTACACTTGAT+TGG + chr6_3:98184636-98184655 Msa0968050:CDS 35.0%
! ATCTGTGGTACTTCCATTTT+GGG - chr6_3:98184713-98184732 None:intergenic 35.0%
! AATCTGTGGTACTTCCATTT+TGG - chr6_3:98184714-98184733 None:intergenic 35.0%
!!! AATGGAAGTACCACAGATTT+TGG + chr6_3:98184715-98184734 Msa0968050:CDS 35.0%
TCAACATTAATCCACGCAGT+AGG + chr6_3:98183696-98183715 Msa0968050:CDS 40.0%
CAACATTAATCCACGCAGTA+GGG + chr6_3:98183697-98183716 Msa0968050:CDS 40.0%
GCAGAAAACAAGAAGTTGAC+AGG + chr6_3:98183967-98183986 Msa0968050:CDS 40.0%
AGCAGTAACAATCTAATGGG+AGG + chr6_3:98184114-98184133 Msa0968050:CDS 40.0%
AATCTAATGGGAGGAGTAAC+TGG + chr6_3:98184123-98184142 Msa0968050:CDS 40.0%
TTGAAGTATGCTCTTGGAGA+TGG - chr6_3:98184440-98184459 None:intergenic 40.0%
! GAGCATTTGAAGTATGCTCT+TGG - chr6_3:98184446-98184465 None:intergenic 40.0%
TATGTTGCAACCACAACTGA+TGG - chr6_3:98184521-98184540 None:intergenic 40.0%
GTTGTGGTTGCAACATATGA+AGG + chr6_3:98184524-98184543 Msa0968050:CDS 40.0%
TCATCCTCATCCTTCTCAAA+CGG + chr6_3:98184556-98184575 Msa0968050:CDS 40.0%
! TTCTTAGAAGGTGCAGAAGA+AGG - chr6_3:98184674-98184693 None:intergenic 40.0%
ATCTGTTCCACCAAAATCTG+TGG - chr6_3:98184728-98184747 None:intergenic 40.0%
!! ACAGATTTTGGTGGAACAGA+TGG + chr6_3:98184727-98184746 Msa0968050:CDS 40.0%
!! TGCTCTGAAGTTAAGATCCT+TGG - chr6_3:98184765-98184784 None:intergenic 40.0%
AGCAAGGAAAAGAACTAGCT+TGG + chr6_3:98185040-98185059 Msa0968050:three_prime_UTR 40.0%
! GGAAAAGAACTAGCTTGGAT+AGG + chr6_3:98185045-98185064 Msa0968050:three_prime_UTR 40.0%
TCAACATTAATCCACGCAGT+AGG + chr6_3:98183696-98183715 Msa0968050:CDS 40.0%
CAACATTAATCCACGCAGTA+GGG + chr6_3:98183697-98183716 Msa0968050:CDS 40.0%
GCAGAAAACAAGAAGTTGAC+AGG + chr6_3:98183967-98183986 Msa0968050:CDS 40.0%
AGCAGTAACAATCTAATGGG+AGG + chr6_3:98184114-98184133 Msa0968050:CDS 40.0%
AATCTAATGGGAGGAGTAAC+TGG + chr6_3:98184123-98184142 Msa0968050:CDS 40.0%
TTGAAGTATGCTCTTGGAGA+TGG - chr6_3:98184440-98184459 None:intergenic 40.0%
! GAGCATTTGAAGTATGCTCT+TGG - chr6_3:98184446-98184465 None:intergenic 40.0%
TATGTTGCAACCACAACTGA+TGG - chr6_3:98184521-98184540 None:intergenic 40.0%
GTTGTGGTTGCAACATATGA+AGG + chr6_3:98184524-98184543 Msa0968050:CDS 40.0%
TCATCCTCATCCTTCTCAAA+CGG + chr6_3:98184556-98184575 Msa0968050:CDS 40.0%
! TTCTTAGAAGGTGCAGAAGA+AGG - chr6_3:98184674-98184693 None:intergenic 40.0%
ATCTGTTCCACCAAAATCTG+TGG - chr6_3:98184728-98184747 None:intergenic 40.0%
!! ACAGATTTTGGTGGAACAGA+TGG + chr6_3:98184727-98184746 Msa0968050:CDS 40.0%
!! TGCTCTGAAGTTAAGATCCT+TGG - chr6_3:98184765-98184784 None:intergenic 40.0%
AGCAAGGAAAAGAACTAGCT+TGG + chr6_3:98185040-98185059 Msa0968050:three_prime_UTR 40.0%
! GGAAAAGAACTAGCTTGGAT+AGG + chr6_3:98185045-98185064 Msa0968050:three_prime_UTR 40.0%
! TTTTCAGTCAAGTGGTGCCT+TGG + chr6_3:98183921-98183940 Msa0968050:intron 45.0%
AGCAAAGCCCATCTCAGAAA+AGG + chr6_3:98184073-98184092 Msa0968050:CDS 45.0%
TTCTTCTTCACTGTGCAGCT+TGG - chr6_3:98184476-98184495 None:intergenic 45.0%
AAGCTGCACAGTGAAGAAGA+AGG + chr6_3:98184475-98184494 Msa0968050:CDS 45.0%
! GAAGAAGGTGCAAAGAAGTG+TGG + chr6_3:98184490-98184509 Msa0968050:CDS 45.0%
TGTGGATGATCCATCAGTTG+TGG + chr6_3:98184508-98184527 Msa0968050:CDS 45.0%
AGCCGACAAACAATCGTTGT+AGG + chr6_3:98184579-98184598 Msa0968050:CDS 45.0%
!! ACTGTACTTGGTGCAGAAGA+AGG - chr6_3:98184626-98184645 None:intergenic 45.0%
!!! GGAAGTACCACAGATTTTGG+TGG + chr6_3:98184718-98184737 Msa0968050:CDS 45.0%
GATGGCTACTTCATTGACCA+AGG + chr6_3:98184745-98184764 Msa0968050:CDS 45.0%
! TTTTCAGTCAAGTGGTGCCT+TGG + chr6_3:98183921-98183940 Msa0968050:intron 45.0%
AGCAAAGCCCATCTCAGAAA+AGG + chr6_3:98184073-98184092 Msa0968050:CDS 45.0%
TTCTTCTTCACTGTGCAGCT+TGG - chr6_3:98184476-98184495 None:intergenic 45.0%
AAGCTGCACAGTGAAGAAGA+AGG + chr6_3:98184475-98184494 Msa0968050:CDS 45.0%
! GAAGAAGGTGCAAAGAAGTG+TGG + chr6_3:98184490-98184509 Msa0968050:CDS 45.0%
TGTGGATGATCCATCAGTTG+TGG + chr6_3:98184508-98184527 Msa0968050:CDS 45.0%
AGCCGACAAACAATCGTTGT+AGG + chr6_3:98184579-98184598 Msa0968050:CDS 45.0%
!! ACTGTACTTGGTGCAGAAGA+AGG - chr6_3:98184626-98184645 None:intergenic 45.0%
!!! GGAAGTACCACAGATTTTGG+TGG + chr6_3:98184718-98184737 Msa0968050:CDS 45.0%
GATGGCTACTTCATTGACCA+AGG + chr6_3:98184745-98184764 Msa0968050:CDS 45.0%
TGTTCATGAACCCTACTGCG+TGG - chr6_3:98183710-98183729 None:intergenic 50.0%
GGGCTTTGCTCCTTATGATC+AGG - chr6_3:98184063-98184082 None:intergenic 50.0%
!! TTTGTCGGCTCCGTTTGAGA+AGG - chr6_3:98184569-98184588 None:intergenic 50.0%
GGTGCAGAAGAAGGTTCTAC+TGG - chr6_3:98184617-98184636 None:intergenic 50.0%
TGTTCATGAACCCTACTGCG+TGG - chr6_3:98183710-98183729 None:intergenic 50.0%
GGGCTTTGCTCCTTATGATC+AGG - chr6_3:98184063-98184082 None:intergenic 50.0%
!! TTTGTCGGCTCCGTTTGAGA+AGG - chr6_3:98184569-98184588 None:intergenic 50.0%
GGTGCAGAAGAAGGTTCTAC+TGG - chr6_3:98184617-98184636 None:intergenic 50.0%
TCAGTCAAGTGGTGCCTTGG+TGG + chr6_3:98183924-98183943 Msa0968050:intron 55.0%
TCGTTTCAGCTCCTCCACCA+AGG - chr6_3:98183941-98183960 None:intergenic 55.0%
GGCTCCGTTTGAGAAGGATG+AGG - chr6_3:98184563-98184582 None:intergenic 55.0%
! GCACTTGCTGCTGCCATATC+AGG + chr6_3:98184785-98184804 Msa0968050:CDS 55.0%
TCAGTCAAGTGGTGCCTTGG+TGG + chr6_3:98183924-98183943 Msa0968050:intron 55.0%
TCGTTTCAGCTCCTCCACCA+AGG - chr6_3:98183941-98183960 None:intergenic 55.0%
GGCTCCGTTTGAGAAGGATG+AGG - chr6_3:98184563-98184582 None:intergenic 55.0%
! GCACTTGCTGCTGCCATATC+AGG + chr6_3:98184785-98184804 Msa0968050:CDS 55.0%
GTCAAGTGGTGCCTTGGTGG+AGG + chr6_3:98183927-98183946 Msa0968050:intron 60.0%
GTCAAGTGGTGCCTTGGTGG+AGG + chr6_3:98183927-98183946 Msa0968050:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 98183572 98185131 98183572 ID=Msa0968050;Name=Msa0968050
chr6_3 mRNA 98183572 98185131 98183572 ID=Msa0968050-mRNA-1;Parent=Msa0968050;Name=Msa0968050-mRNA-1;_AED=0.04;_eAED=0.04;_QI=84|1|1|1|1|1|3|302|317
chr6_3 exon 98183572 98183811 98183572 ID=Msa0968050-mRNA-1:exon:18366;Parent=Msa0968050-mRNA-1
chr6_3 exon 98183928 98184275 98183928 ID=Msa0968050-mRNA-1:exon:18367;Parent=Msa0968050-mRNA-1
chr6_3 exon 98184380 98185131 98184380 ID=Msa0968050-mRNA-1:exon:18368;Parent=Msa0968050-mRNA-1
chr6_3 five_prime_UTR 98183572 98183655 98183572 ID=Msa0968050-mRNA-1:five_prime_utr;Parent=Msa0968050-mRNA-1
chr6_3 CDS 98183656 98183811 98183656 ID=Msa0968050-mRNA-1:cds;Parent=Msa0968050-mRNA-1
chr6_3 CDS 98183928 98184275 98183928 ID=Msa0968050-mRNA-1:cds;Parent=Msa0968050-mRNA-1
chr6_3 CDS 98184380 98184829 98184380 ID=Msa0968050-mRNA-1:cds;Parent=Msa0968050-mRNA-1
chr6_3 three_prime_UTR 98184830 98185131 98184830 ID=Msa0968050-mRNA-1:three_prime_utr;Parent=Msa0968050-mRNA-1
Gene Sequence

>Msa0968050

ATGGATTTTTCATCATCATGGATTAACACTTCCTTGGATCTCAACATTAATCCACGCAGTAGGGTTCATGAACAACCTCCTGTAAGTTTCAAGAAATATGAGGTGGAAAACAATTTTTTCTCATTAGGGATGAGTATATCTTCTGCAAAAGAAGAGTCAAGTGGTGCCTTGGTGGAGGAGCTGAAACGAGTGAGTGCAGAAAACAAGAAGTTGACAGGAATGTTGACTGAGATGTGTGAGAATTACAACACATTGAGAAACAATCTGATGGAATATATGAGAAAGAATCCTGATCATAAGGAGCAAAGCCCATCTCAGAAAAGGAAATCTGATGAAATAAGCAGCAGTAACAATCTAATGGGAGGAGTAACTGGAAACAACTCTGAGAGCAGTTCAAGTGATGAAGATCAATCATGCAAGAAACCAAGGCAAATAGTAGAAACTTGCATTAAGGCTAAAGTTTCAAGAGTTTATTTCAAGACAGAATCATCTGATTCAAGCCTTATTGTGAAAGATGGATATCAGTGGAGAAAATATGGACAAAAGGTGACAAGGGATAATCCATCTCCAAGAGCATACTTCAAATGCTCATTTGCTCCAAGCTGCACAGTGAAGAAGAAGGTGCAAAGAAGTGTGGATGATCCATCAGTTGTGGTTGCAACATATGAAGGAGAGCATAATCATCCTCATCCTTCTCAAACGGAGCCGACAAACAATCGTTGTAGGAACCAAATTAGTCCAGTAGAACCTTCTTCTGCACCAAGTACAGTTACACTTGATTGGACAAAGAAAGCACCTTCTTCTGCACCTTCTAAGAATATGATGATAAATAATCCCAAAATGGAAGTACCACAGATTTTGGTGGAACAGATGGCTACTTCATTGACCAAGGATCTTAACTTCAGAGCAGCACTTGCTGCTGCCATATCAGGAAAAATGTTACACCAAAATTAG
Protein sequence

>Msa0968050

MDFSSSWINTSLDLNINPRSRVHEQPPVSFKKYEVENNFFSLGMSISSAKEESSGALVEELKRVSAENKKLTGMLTEMCENYNTLRNNLMEYMRKNPDHKEQSPSQKRKSDEISSSNNLMGGVTGNNSESSSSDEDQSCKKPRQIVETCIKAKVSRVYFKTESSDSSLIVKDGYQWRKYGQKVTRDNPSPRAYFKCSFAPSCTVKKKVQRSVDDPSVVVATYEGEHNHPHPSQTEPTNNRCRNQISPVEPSSAPSTVTLDWTKKAPSSAPSKNMMINNPKMEVPQILVEQMATSLTKDLNFRAALAAAISGKMLHQN*