Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769980 | G7JZF0 | 95.000 | 120 | 6 | 0 | 1 | 120 | 1 | 120 | 9.50e-77 | 231 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020390 | Msa0769980 | 0.823643 | 1.239972e-53 | -8.615850e-47 |
| Msa0020410 | Msa0769980 | 0.800586 | 1.344803e-48 | -8.615850e-47 |
| Msa0021210 | Msa0769980 | 0.809472 | 1.861066e-50 | -8.615850e-47 |
| Msa0023000 | Msa0769980 | 0.852114 | 5.707459e-61 | -8.615850e-47 |
| Msa0032580 | Msa0769980 | 0.813277 | 2.776097e-51 | -8.615850e-47 |
| Msa0037880 | Msa0769980 | 0.811359 | 7.283415e-51 | -8.615850e-47 |
| Msa0044000 | Msa0769980 | 0.822443 | 2.362542e-53 | -8.615850e-47 |
| Msa0052400 | Msa0769980 | 0.805596 | 1.236898e-49 | -8.615850e-47 |
| Msa0058300 | Msa0769980 | 0.822547 | 2.234885e-53 | -8.615850e-47 |
| Msa0065950 | Msa0769980 | 0.844440 | 7.551799e-59 | -8.615850e-47 |
| Msa0090570 | Msa0769980 | 0.828370 | 9.336727e-55 | -8.615850e-47 |
| Msa0114430 | Msa0769980 | 0.809775 | 1.601961e-50 | -8.615850e-47 |
| Msa0115270 | Msa0769980 | 0.804493 | 2.103880e-49 | -8.615850e-47 |
| Msa0118540 | Msa0769980 | 0.810010 | 1.425632e-50 | -8.615850e-47 |
| Msa0118780 | Msa0769980 | 0.853697 | 2.012798e-61 | -8.615850e-47 |
| Msa0608160 | Msa0769980 | 0.804156 | 2.472787e-49 | -8.615850e-47 |
| Msa0610430 | Msa0769980 | 0.803130 | 4.037475e-49 | -8.615850e-47 |
| Msa0615490 | Msa0769980 | 0.800729 | 1.256992e-48 | -8.615850e-47 |
| Msa0623860 | Msa0769980 | 0.821738 | 3.441461e-53 | -8.615850e-47 |
| Msa0631350 | Msa0769980 | 0.807070 | 6.049997e-50 | -8.615850e-47 |
| Msa0641670 | Msa0769980 | 0.809964 | 1.458358e-50 | -8.615850e-47 |
| Msa0648080 | Msa0769980 | 0.803678 | 3.108017e-49 | -8.615850e-47 |
| Msa0650190 | Msa0769980 | 0.818289 | 2.118330e-52 | -8.615850e-47 |
| Msa0682680 | Msa0769980 | 0.814584 | 1.429881e-51 | -8.615850e-47 |
| Msa0692830 | Msa0769980 | 0.812101 | 5.023100e-51 | -8.615850e-47 |
| Msa0692950 | Msa0769980 | 0.805595 | 1.237428e-49 | -8.615850e-47 |
| Msa0698540 | Msa0769980 | 0.820326 | 7.277107e-53 | -8.615850e-47 |
| Msa0701010 | Msa0769980 | 0.813076 | 3.072988e-51 | -8.615850e-47 |
| Msa0701100 | Msa0769980 | 0.811124 | 8.192095e-51 | -8.615850e-47 |
| Msa0722020 | Msa0769980 | 0.830274 | 3.219844e-55 | -8.615850e-47 |
| Msa0723820 | Msa0769980 | 0.804315 | 2.291025e-49 | -8.615850e-47 |
| Msa0723830 | Msa0769980 | 0.804914 | 1.718489e-49 | -8.615850e-47 |
| Msa0737600 | Msa0769980 | 0.807382 | 5.195025e-50 | -8.615850e-47 |
| Msa0747260 | Msa0769980 | 0.817229 | 3.675438e-52 | -8.615850e-47 |
| Msa0747270 | Msa0769980 | 0.807510 | 4.880637e-50 | -8.615850e-47 |
| Msa0750650 | Msa0769980 | 0.818189 | 2.231545e-52 | -8.615850e-47 |
| Msa0763020 | Msa0769980 | 0.803726 | 3.037928e-49 | -8.615850e-47 |
| Msa0769980 | Msa0771720 | 0.805368 | 1.380989e-49 | -8.615850e-47 |
| Msa0769980 | Msa0784860 | 0.817759 | 2.791559e-52 | -8.615850e-47 |
| Msa0769980 | Msa0800370 | 0.814838 | 1.256118e-51 | -8.615850e-47 |
| Msa0769980 | Msa0808080 | 0.868274 | 7.374521e-66 | -8.615850e-47 |
| Msa0769980 | Msa0820850 | 0.815753 | 7.863936e-52 | -8.615850e-47 |
| Msa0769980 | Msa0849030 | 0.883002 | 6.484284e-71 | -8.615850e-47 |
| Msa0769980 | Msa0861130 | 0.811399 | 7.138288e-51 | -8.615850e-47 |
| Msa0769980 | Msa0868700 | 0.831862 | 1.312132e-55 | -8.615850e-47 |
| Msa0769980 | Msa0890550 | 0.809364 | 1.962279e-50 | -8.615850e-47 |
| Msa0769980 | Msa0927260 | 0.805029 | 1.625953e-49 | -8.615850e-47 |
| Msa0769980 | Msa0927380 | 0.808537 | 2.950384e-50 | -8.615850e-47 |
| Msa0769980 | Msa0969810 | 0.807976 | 3.885075e-50 | -8.615850e-47 |
| Msa0769980 | Msa0974950 | 0.810159 | 1.324095e-50 | -8.615850e-47 |
| Msa0769980 | Msa0994370 | 0.823988 | 1.029637e-53 | -8.615850e-47 |
| Msa0769980 | Msa0999050 | -0.806726 | 7.150014e-50 | -8.615850e-47 |
| Msa0769980 | Msa0999430 | 0.816141 | 6.445405e-52 | -8.615850e-47 |
| Msa0769980 | Msa1006710 | 0.835633 | 1.498201e-56 | -8.615850e-47 |
| Msa0769980 | Msa1012830 | 0.814683 | 1.359486e-51 | -8.615850e-47 |
| Msa0769980 | Msa1023180 | 0.834850 | 2.361613e-56 | -8.615850e-47 |
| Msa0769980 | Msa1029050 | 0.808515 | 2.981544e-50 | -8.615850e-47 |
| Msa0769980 | Msa1037420 | 0.840946 | 6.398371e-58 | -8.615850e-47 |
| Msa0769980 | Msa1043050 | 0.837062 | 6.485050e-57 | -8.615850e-47 |
| Msa0769980 | Msa1048160 | 0.805484 | 1.305730e-49 | -8.615850e-47 |
| Msa0769980 | Msa1051200 | 0.804299 | 2.309313e-49 | -8.615850e-47 |
| Msa0769980 | Msa1063510 | 0.800142 | 1.655401e-48 | -8.615850e-47 |
| Msa0769980 | Msa1068870 | 0.816882 | 4.398186e-52 | -8.615850e-47 |
| Msa0769980 | Msa1072900 | 0.811241 | 7.726330e-51 | -8.615850e-47 |
| Msa0769980 | Msa1087710 | 0.801079 | 1.066239e-48 | -8.615850e-47 |
| Msa0769980 | Msa1109680 | 0.821792 | 3.343605e-53 | -8.615850e-47 |
| Msa0769980 | Msa1137570 | 0.810908 | 9.123936e-51 | -8.615850e-47 |
| Msa0769980 | Msa1137700 | 0.804786 | 1.827625e-49 | -8.615850e-47 |
| Msa0769980 | Msa1144040 | 0.810538 | 1.096760e-50 | -8.615850e-47 |
| Msa0769980 | Msa1150710 | 0.841806 | 3.800492e-58 | -8.615850e-47 |
| Msa0769980 | Msa1174040 | 0.821210 | 4.557595e-53 | -8.615850e-47 |
| Msa0769980 | Msa1181250 | 0.810581 | 1.073355e-50 | -8.615850e-47 |
| Msa0769980 | Msa1181330 | 0.802983 | 4.329358e-49 | -8.615850e-47 |
| Msa0769980 | Msa1206270 | 0.815645 | 8.313651e-52 | -8.615850e-47 |
| Msa0769980 | Msa1206290 | 0.820764 | 5.771650e-53 | -8.615850e-47 |
| Msa0769980 | Msa1210020 | 0.824278 | 8.801201e-54 | -8.615850e-47 |
| Msa0769980 | Msa1231840 | 0.810187 | 1.305999e-50 | -8.615850e-47 |
| Msa0769980 | Msa1232740 | 0.820068 | 8.339064e-53 | -8.615850e-47 |
| Msa0769980 | Msa1253020 | 0.811616 | 6.404397e-51 | -8.615850e-47 |
| Msa0769980 | Msa1253800 | 0.801211 | 1.002122e-48 | -8.615850e-47 |
| Msa0769980 | Msa1254730 | 0.838693 | 2.471191e-57 | -8.615850e-47 |
| Msa0769980 | Msa1262720 | 0.801232 | 9.920924e-49 | -8.615850e-47 |
| Msa0769980 | Msa1270660 | 0.809787 | 1.592032e-50 | -8.615850e-47 |
| Msa0769980 | Msa1272870 | 0.802064 | 6.698970e-49 | -8.615850e-47 |
| Msa0769980 | Msa1274560 | 0.806423 | 8.285410e-50 | -8.615850e-47 |
| Msa0769980 | Msa1277660 | 0.813193 | 2.897566e-51 | -8.615850e-47 |
| Msa0769980 | Msa1296830 | 0.806902 | 6.563886e-50 | -8.615850e-47 |
| Msa0769980 | Msa1298510 | 0.826985 | 2.008223e-54 | -8.615850e-47 |
| Msa0769980 | Msa1306760 | 0.807488 | 4.932864e-50 | -8.615850e-47 |
| Msa0769980 | Msa1313320 | 0.820508 | 6.610620e-53 | -8.615850e-47 |
| Msa0769980 | Msa1336560 | 0.812081 | 5.071379e-51 | -8.615850e-47 |
| Msa0769980 | Msa1345220 | 0.822132 | 2.789822e-53 | -8.615850e-47 |
| Msa0769980 | Msa1355890 | 0.802001 | 6.900396e-49 | -8.615850e-47 |
| Msa0769980 | Msa1410100 | 0.802672 | 5.020368e-49 | -8.615850e-47 |
| Msa0769980 | Msa1410690 | 0.807241 | 5.563900e-50 | -8.615850e-47 |
| Msa0769980 | Msa1412530 | 0.805819 | 1.110320e-49 | -8.615850e-47 |
| Msa0769980 | Msa1427230 | 0.802417 | 5.666122e-49 | -8.615850e-47 |
| Msa0769980 | Msa1446250 | 0.801439 | 8.998896e-49 | -8.615850e-47 |
| Msa0769980 | Msa1448620 | 0.807002 | 6.253884e-50 | -8.615850e-47 |
| Msa0769980 | Msa1448630 | 0.832966 | 6.991715e-56 | -8.615850e-47 |
| Msa0769980 | Msa1454570 | 0.802533 | 5.363558e-49 | -8.615850e-47 |
| Msa0769980 | Msa1460320 | -0.835109 | 2.031858e-56 | -8.615850e-47 |
| Msa0769980 | Msa1465850 | 0.805791 | 1.125544e-49 | -8.615850e-47 |
| Msa0127800 | Msa0769980 | 0.820309 | 7.343287e-53 | -8.615850e-47 |
| Msa0162100 | Msa0769980 | 0.803829 | 2.892108e-49 | -8.615850e-47 |
| Msa0162130 | Msa0769980 | 0.834222 | 3.395059e-56 | -8.615850e-47 |
| Msa0172970 | Msa0769980 | 0.812510 | 4.089395e-51 | -8.615850e-47 |
| Msa0178970 | Msa0769980 | 0.803532 | 3.333054e-49 | -8.615850e-47 |
| Msa0180500 | Msa0769980 | 0.817214 | 3.703937e-52 | -8.615850e-47 |
| Msa0183850 | Msa0769980 | 0.830904 | 2.258320e-55 | -8.615850e-47 |
| Msa0183870 | Msa0769980 | 0.800169 | 1.634849e-48 | -8.615850e-47 |
| Msa0189520 | Msa0769980 | 0.836794 | 7.595721e-57 | -8.615850e-47 |
| Msa0190120 | Msa0769980 | 0.802271 | 6.072675e-49 | -8.615850e-47 |
| Msa0194480 | Msa0769980 | 0.817110 | 3.908487e-52 | -8.615850e-47 |
| Msa0228070 | Msa0769980 | 0.807109 | 5.934346e-50 | -8.615850e-47 |
| Msa0229380 | Msa0769980 | 0.811466 | 6.904401e-51 | -8.615850e-47 |
| Msa0387820 | Msa0769980 | 0.804547 | 2.050121e-49 | -8.615850e-47 |
| Msa0402790 | Msa0769980 | 0.816119 | 6.517382e-52 | -8.615850e-47 |
| Msa0423450 | Msa0769980 | -0.806540 | 7.828860e-50 | -8.615850e-47 |
| Msa0467380 | Msa0769980 | 0.814672 | 1.367454e-51 | -8.615850e-47 |
| Msa0469620 | Msa0769980 | -0.822943 | 1.807253e-53 | -8.615850e-47 |
| Msa0481280 | Msa0769980 | 0.810616 | 1.055004e-50 | -8.615850e-47 |
| Msa0245650 | Msa0769980 | 0.802954 | 4.390982e-49 | -8.615850e-47 |
| Msa0257490 | Msa0769980 | 0.815219 | 1.034205e-51 | -8.615850e-47 |
| Msa0261550 | Msa0769980 | 0.816840 | 4.492834e-52 | -8.615850e-47 |
| Msa0261720 | Msa0769980 | 0.812555 | 3.997683e-51 | -8.615850e-47 |
| Msa0271360 | Msa0769980 | 0.823854 | 1.106602e-53 | -8.615850e-47 |
| Msa0271890 | Msa0769980 | 0.805976 | 1.028976e-49 | -8.615850e-47 |
| Msa0309880 | Msa0769980 | 0.824238 | 8.995306e-54 | -8.615850e-47 |
| Msa0310860 | Msa0769980 | 0.809709 | 1.654449e-50 | -8.615850e-47 |
| Msa0343850 | Msa0769980 | 0.814969 | 1.174948e-51 | -8.615850e-47 |
| Msa0353540 | Msa0769980 | 0.825286 | 5.091227e-54 | -8.615850e-47 |
| Msa0357900 | Msa0769980 | 0.804746 | 1.862954e-49 | -8.615850e-47 |
| Msa0493410 | Msa0769980 | 0.800805 | 1.213060e-48 | -8.615850e-47 |
| Msa0510840 | Msa0769980 | 0.815682 | 8.158384e-52 | -8.615850e-47 |
| Msa0520790 | Msa0769980 | 0.801926 | 7.150426e-49 | -8.615850e-47 |
| Msa0523940 | Msa0769980 | 0.817346 | 3.458272e-52 | -8.615850e-47 |
| Msa0529040 | Msa0769980 | 0.821347 | 4.237887e-53 | -8.615850e-47 |
| Msa0534410 | Msa0769980 | 0.818963 | 1.489514e-52 | -8.615850e-47 |
| Msa0534900 | Msa0769980 | 0.819376 | 1.200031e-52 | -8.615850e-47 |
| Msa0542290 | Msa0769980 | 0.837158 | 6.129673e-57 | -8.615850e-47 |
| Msa0545700 | Msa0769980 | 0.806417 | 8.311171e-50 | -8.615850e-47 |
| Msa0548920 | Msa0769980 | 0.810609 | 1.058527e-50 | -8.615850e-47 |
| Msa0588260 | Msa0769980 | 0.811171 | 7.999742e-51 | -8.615850e-47 |
| Msa0590650 | Msa0769980 | 0.802273 | 6.067064e-49 | -8.615850e-47 |
| Msa0592440 | Msa0769980 | 0.820446 | 6.828737e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769980 | MtrunA17_Chr5g0422991 | 95.000 | 120 | 6 | 0 | 1 | 120 | 1 | 120 | 1.83e-80 | 231 |
| Msa0769980 | MtrunA17_Chr1g0210031 | 61.475 | 122 | 43 | 2 | 1 | 119 | 1 | 121 | 1.05e-33 | 114 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0769980 | AT1G68585.1 | 47.778 | 90 | 42 | 2 | 27 | 116 | 26 | 110 | 2.58e-17 | 72.4 |
Find 33 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATAAATTCAATAGGTTAGA+AGG | 0.260854 | 5_2:-39899381 | None:intergenic |
| GTTTGGTAATTGCAACTTTA+GGG | 0.275974 | 5_2:-39902177 | None:intergenic |
| CGTTTGGTAATTGCAACTTT+AGG | 0.306869 | 5_2:-39902178 | None:intergenic |
| TAATGTCAATAACCCTCTTT+TGG | 0.320029 | 5_2:-39899800 | None:intergenic |
| TAAAAGCCATAACTATGATT+AGG | 0.355577 | 5_2:-39899441 | None:intergenic |
| CATGTATATTGTTTAGTAGT+TGG | 0.360222 | 5_2:-39899280 | None:intergenic |
| TTATATTATATAAATTCAAT+AGG | 0.373426 | 5_2:-39899389 | None:intergenic |
| AGGGAGATGATTCCTGTTGA+TGG | 0.387507 | 5_2:-39902158 | None:intergenic |
| GGCAAATTGCTCCCATCAAC+AGG | 0.390535 | 5_2:+39902146 | Msa0769980:CDS |
| TTCCAACACATTCACTTCCA+TGG | 0.444080 | 5_2:-39902071 | None:intergenic |
| TATTGTTCTATCAGTGTAGA+AGG | 0.444899 | 5_2:+39899304 | Msa0769980:five_prime_UTR |
| GGAAGATTGAAATAAACGTT+TGG | 0.454568 | 5_2:-39902194 | None:intergenic |
| TGCACACCTAATCATAGTTA+TGG | 0.486631 | 5_2:+39899435 | Msa0769980:exon |
| GGGAGATGATTCCTGTTGAT+GGG | 0.487913 | 5_2:-39902157 | None:intergenic |
| TATATTGTTTAGTAGTTGGT+GGG | 0.489742 | 5_2:-39899276 | None:intergenic |
| AAGGATCTGTATGTTTAGAA+AGG | 0.494543 | 5_2:+39902239 | Msa0769980:three_prime_UTR |
| GCTAAACTAGTCCCAAATAG+AGG | 0.496198 | 5_2:-39899520 | None:intergenic |
| GTATATTGTTTAGTAGTTGG+TGG | 0.497558 | 5_2:-39899277 | None:intergenic |
| TTCAGTAGAGACAGAGTCCA+TGG | 0.506523 | 5_2:+39902054 | Msa0769980:intron |
| GTGATTCCTTTAGCCACAGT+TGG | 0.523574 | 5_2:-39902121 | None:intergenic |
| ATATTACCAACTGTGGCTAA+AGG | 0.527091 | 5_2:+39902115 | Msa0769980:CDS |
| AATTGCTATAAGAAGTTCAA+AGG | 0.529247 | 5_2:+39899492 | Msa0769980:CDS |
| GTTAAGTCGTAGCTAATCAA+AGG | 0.533545 | 5_2:-39902215 | None:intergenic |
| GAAAATACAAACCTTTGGCA+TGG | 0.555520 | 5_2:-39899560 | None:intergenic |
| GGTTAGAAGGTTCAATCGCA+TGG | 0.560304 | 5_2:-39899368 | None:intergenic |
| TACATTCATATTACCAACTG+TGG | 0.568778 | 5_2:+39902108 | Msa0769980:CDS |
| CAACTACTAAACAATATACA+TGG | 0.569375 | 5_2:+39899281 | Msa0769980:five_prime_UTR |
| AGAATCTTTATCCATGCCAA+AGG | 0.574098 | 5_2:+39899549 | Msa0769980:CDS |
| CTGTGGCTAAAGGAATCACT+AGG | 0.600468 | 5_2:+39902125 | Msa0769980:CDS |
| GTGTGAGAAGTGCCAAAAGA+GGG | 0.612120 | 5_2:+39899788 | Msa0769980:CDS |
| AGTGTGAGAAGTGCCAAAAG+AGG | 0.617748 | 5_2:+39899787 | Msa0769980:CDS |
| GTCCATGGAAGTGAATGTGT+TGG | 0.627475 | 5_2:+39902069 | Msa0769980:CDS |
| GATTAGCTACGACTTAACAA+AGG | 0.628374 | 5_2:+39902220 | Msa0769980:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATGATTTAAATTAAATAT+AGG | - | chr5_2:39900841-39900860 | None:intergenic | 10.0% |
| !!! | TACTACATAAATAATTTTTT+TGG | + | chr5_2:39902288-39902307 | Msa0769980:three_prime_UTR | 10.0% |
| !!! | ACTACATAAATAATTTTTTT+GGG | + | chr5_2:39902289-39902308 | Msa0769980:three_prime_UTR | 10.0% |
| !!! | TATTTTCACTTACTTTATTT+TGG | + | chr5_2:39899576-39899595 | Msa0769980:intron | 15.0% |
| !!! | ATTTTCACTTACTTTATTTT+GGG | + | chr5_2:39899577-39899596 | Msa0769980:intron | 15.0% |
| !! | TCTCAAAAAAAATCTTAAAA+AGG | - | chr5_2:39900063-39900082 | None:intergenic | 15.0% |
| !!! | TTTTTAAGATTTTTTTTGAG+AGG | + | chr5_2:39900062-39900081 | Msa0769980:intron | 15.0% |
| !!! | AACAATAGTATTACAAATTT+TGG | + | chr5_2:39900089-39900108 | Msa0769980:intron | 15.0% |
| !!! | ACAATAGTATTACAAATTTT+GGG | + | chr5_2:39900090-39900109 | Msa0769980:intron | 15.0% |
| !! | AGAAAAATCTTAAAAATGTA+TGG | - | chr5_2:39900116-39900135 | None:intergenic | 15.0% |
| !! | ATATCAAACATAGATTTATA+CGG | - | chr5_2:39900638-39900657 | None:intergenic | 15.0% |
| !!! | ATATGTTATGTTTGATTTTT+GGG | + | chr5_2:39900778-39900797 | Msa0769980:intron | 15.0% |
| !! | AAAAATTATTCAAAGTAAAG+AGG | - | chr5_2:39900897-39900916 | None:intergenic | 15.0% |
| !!! | AAATGTGATTTTTTTAATAG+GGG | - | chr5_2:39901485-39901504 | None:intergenic | 15.0% |
| !!! | GAAATGTGATTTTTTTAATA+GGG | - | chr5_2:39901486-39901505 | None:intergenic | 15.0% |
| !!! | TGAAATGTGATTTTTTTAAT+AGG | - | chr5_2:39901487-39901506 | None:intergenic | 15.0% |
| !! | AATTGAAAATTGCAAAAAAA+AGG | + | chr5_2:39901686-39901705 | Msa0769980:intron | 15.0% |
| !! | ATAAATTATGTGTAGATAAA+TGG | + | chr5_2:39901795-39901814 | Msa0769980:intron | 15.0% |
| !! | TATAAATTCAATAGGTTAGA+AGG | - | chr5_2:39899384-39899403 | None:intergenic | 20.0% |
| !! | GACATTATTACAAAAATGAA+CGG | + | chr5_2:39899816-39899835 | Msa0769980:CDS | 20.0% |
| !!! | TTTTAAGATTTTTCTTTGAG+AGG | + | chr5_2:39900121-39900140 | Msa0769980:intron | 20.0% |
| !!! | TTTCAAAGTCTTTGTTATAA+AGG | + | chr5_2:39900213-39900232 | Msa0769980:intron | 20.0% |
| !!! | AGAGATTTGATGTTTTATAT+AGG | - | chr5_2:39900420-39900439 | None:intergenic | 20.0% |
| !! | ATAAAACATCAAATCTCTAT+TGG | + | chr5_2:39900422-39900441 | Msa0769980:intron | 20.0% |
| !! | TAAACCAATTGATCTTAAAT+AGG | - | chr5_2:39900504-39900523 | None:intergenic | 20.0% |
| !!! | TAATTATACCTTAATTTGCA+TGG | + | chr5_2:39900573-39900592 | Msa0769980:intron | 20.0% |
| !! | ATCTATGTTTGATATTATAG+TGG | + | chr5_2:39900643-39900662 | Msa0769980:intron | 20.0% |
| !! | ATAACATATGTTTAGTATGA+CGG | - | chr5_2:39900767-39900786 | None:intergenic | 20.0% |
| !!! | CATATGTTATGTTTGATTTT+TGG | + | chr5_2:39900777-39900796 | Msa0769980:intron | 20.0% |
| !!! | TAATTTTTTCAAAAAGTGAG+AGG | + | chr5_2:39900909-39900928 | Msa0769980:intron | 20.0% |
| !!! | TTTTTTAGTAAGTCAACATT+TGG | + | chr5_2:39900988-39901007 | Msa0769980:intron | 20.0% |
| !! | AATAAAAGCAAACTATGTAA+TGG | - | chr5_2:39901367-39901386 | None:intergenic | 20.0% |
| !! | ATAATTTATGTGAATTTCAG+TGG | - | chr5_2:39901784-39901803 | None:intergenic | 20.0% |
| !! | TTATTTGTCACAATAATAGT+AGG | + | chr5_2:39901920-39901939 | Msa0769980:intron | 20.0% |
| ! | TATATTGTTTAGTAGTTGGT+GGG | - | chr5_2:39899279-39899298 | None:intergenic | 25.0% |
| ! | CATGTATATTGTTTAGTAGT+TGG | - | chr5_2:39899283-39899302 | None:intergenic | 25.0% |
| ! | CAACTACTAAACAATATACA+TGG | + | chr5_2:39899281-39899300 | Msa0769980:five_prime_UTR | 25.0% |
| ! | TAAAAGCCATAACTATGATT+AGG | - | chr5_2:39899444-39899463 | None:intergenic | 25.0% |
| ! | AATTGCTATAAGAAGTTCAA+AGG | + | chr5_2:39899492-39899511 | Msa0769980:CDS | 25.0% |
| ! | TAAGTGAAAATACAAACCTT+TGG | - | chr5_2:39899568-39899587 | None:intergenic | 25.0% |
| !!! | TTTGGGTTTTGATTTATGTT+TGG | + | chr5_2:39899594-39899613 | Msa0769980:intron | 25.0% |
| ! | GATTTATGTTTGGATATAGA+CGG | + | chr5_2:39899604-39899623 | Msa0769980:intron | 25.0% |
| ! | CATATGACCAAATTTATGTT+TGG | - | chr5_2:39899685-39899704 | None:intergenic | 25.0% |
| !!! | CTTTTCTAGGAATTTTAACT+TGG | - | chr5_2:39900241-39900260 | None:intergenic | 25.0% |
| !! | GTTTTATATAGGAATGAGAT+TGG | - | chr5_2:39900409-39900428 | None:intergenic | 25.0% |
| ! | CGATATTTAGTTACTATAAG+TGG | - | chr5_2:39900462-39900481 | None:intergenic | 25.0% |
| !!! | CTCTGTTTTGAACATAAATA+AGG | + | chr5_2:39900539-39900558 | Msa0769980:intron | 25.0% |
| !!! | TGTTTTGAACATAAATAAGG+TGG | + | chr5_2:39900542-39900561 | Msa0769980:intron | 25.0% |
| ! | AATTGTATCCATGCAAATTA+AGG | - | chr5_2:39900584-39900603 | None:intergenic | 25.0% |
| ! | CAAGATTAAAAGTTGCAAAA+GGG | - | chr5_2:39901525-39901544 | None:intergenic | 25.0% |
| ! | TCAAGATTAAAAGTTGCAAA+AGG | - | chr5_2:39901526-39901545 | None:intergenic | 25.0% |
| ! | AACAACTAGTACAAAGAATA+TGG | - | chr5_2:39901593-39901612 | None:intergenic | 25.0% |
| ! | TGCAAAAAAAAGGAAAACTT+AGG | + | chr5_2:39901696-39901715 | Msa0769980:intron | 25.0% |
| ! | GCAAAAAAAAGGAAAACTTA+GGG | + | chr5_2:39901697-39901716 | Msa0769980:intron | 25.0% |
| ! | CAAAAAAAAGGAAAACTTAG+GGG | + | chr5_2:39901698-39901717 | Msa0769980:intron | 25.0% |
| ! | AAAAAAAAGGAAAACTTAGG+GGG | + | chr5_2:39901699-39901718 | Msa0769980:intron | 25.0% |
| !! | AAAATGCTTAAACACACTTT+TGG | - | chr5_2:39901745-39901764 | None:intergenic | 25.0% |
| GTATATTGTTTAGTAGTTGG+TGG | - | chr5_2:39899280-39899299 | None:intergenic | 30.0% | |
| TATTGTTCTATCAGTGTAGA+AGG | + | chr5_2:39899304-39899323 | Msa0769980:five_prime_UTR | 30.0% | |
| ! | TCAAAGGATTTTCCTCTATT+TGG | + | chr5_2:39899508-39899527 | Msa0769980:CDS | 30.0% |
| ! | CAAAGGATTTTCCTCTATTT+GGG | + | chr5_2:39899509-39899528 | Msa0769980:CDS | 30.0% |
| TGTCGATCCAAACATAAATT+TGG | + | chr5_2:39899675-39899694 | Msa0769980:intron | 30.0% | |
| GGTTATGTTGCTATAAAAAC+AGG | + | chr5_2:39899734-39899753 | Msa0769980:intron | 30.0% | |
| ! | TAATGTCAATAACCCTCTTT+TGG | - | chr5_2:39899803-39899822 | None:intergenic | 30.0% |
| AGTCACATGATAACAACTTT+AGG | - | chr5_2:39899911-39899930 | None:intergenic | 30.0% | |
| !! | TTACACAAGAGTTTGTTTTC+AGG | - | chr5_2:39899962-39899981 | None:intergenic | 30.0% |
| CAAACTCTTGTGTAAAAAAC+AGG | + | chr5_2:39899967-39899986 | Msa0769980:intron | 30.0% | |
| ! | CTTTGAGAGGAAATATCATT+AGG | + | chr5_2:39900134-39900153 | Msa0769980:intron | 30.0% |
| !! | ATTCCTAGAAAAGTATTCCA+TGG | + | chr5_2:39900248-39900267 | Msa0769980:intron | 30.0% |
| !! | TTCCTAGAAAAGTATTCCAT+GGG | + | chr5_2:39900249-39900268 | Msa0769980:intron | 30.0% |
| ! | AGAGCCTATTTAAGATCAAT+TGG | + | chr5_2:39900497-39900516 | Msa0769980:intron | 30.0% |
| ! | AATTGGTTTATCCTCAATTG+AGG | + | chr5_2:39900514-39900533 | Msa0769980:intron | 30.0% |
| ! | ATTGGTTTATCCTCAATTGA+GGG | + | chr5_2:39900515-39900534 | Msa0769980:intron | 30.0% |
| GTAACTAACAATAGCAGTTT+CGG | - | chr5_2:39901069-39901088 | None:intergenic | 30.0% | |
| TGCAAAAGGGAAAAAACATA+GGG | - | chr5_2:39901512-39901531 | None:intergenic | 30.0% | |
| TTGCAAAAGGGAAAAAACAT+AGG | - | chr5_2:39901513-39901532 | None:intergenic | 30.0% | |
| TCAAGACAATAAAAGCAAGT+GGG | - | chr5_2:39901644-39901663 | None:intergenic | 30.0% | |
| TTCAAGACAATAAAAGCAAG+TGG | - | chr5_2:39901645-39901664 | None:intergenic | 30.0% | |
| AAAAAAAGGAAAACTTAGGG+GGG | + | chr5_2:39901700-39901719 | Msa0769980:intron | 30.0% | |
| !!! | TATGCGATTTTTTGATACGT+AGG | - | chr5_2:39901838-39901857 | None:intergenic | 30.0% |
| ! | AACTTTGCTAACTTTTGCAA+TGG | + | chr5_2:39901991-39902010 | Msa0769980:intron | 30.0% |
| CTACTGAAACATCATAATTG+AGG | - | chr5_2:39902042-39902061 | None:intergenic | 30.0% | |
| TACATTCATATTACCAACTG+TGG | + | chr5_2:39902108-39902127 | Msa0769980:CDS | 30.0% | |
| ! | GTTTGGTAATTGCAACTTTA+GGG | - | chr5_2:39902180-39902199 | None:intergenic | 30.0% |
| GGAAGATTGAAATAAACGTT+TGG | - | chr5_2:39902197-39902216 | None:intergenic | 30.0% | |
| AAGGATCTGTATGTTTAGAA+AGG | + | chr5_2:39902239-39902258 | Msa0769980:three_prime_UTR | 30.0% | |
| !! | TAGTTGGTGGGTTAGAAAAA+TGG | - | chr5_2:39899267-39899286 | None:intergenic | 35.0% |
| TGCACACCTAATCATAGTTA+TGG | + | chr5_2:39899435-39899454 | Msa0769980:exon | 35.0% | |
| AGAATCTTTATCCATGCCAA+AGG | + | chr5_2:39899549-39899568 | Msa0769980:CDS | 35.0% | |
| GAAAATACAAACCTTTGGCA+TGG | - | chr5_2:39899563-39899582 | None:intergenic | 35.0% | |
| !!! | TTTTAGAGTATTCAGCCTGA+TGG | + | chr5_2:39899708-39899727 | Msa0769980:intron | 35.0% |
| GCTATAAAAACAGGTTCATG+AGG | + | chr5_2:39899743-39899762 | Msa0769980:intron | 35.0% | |
| ! | ATTGCCAATTTAGAGCTATG+AGG | + | chr5_2:39899873-39899892 | Msa0769980:intron | 35.0% |
| ! | TTGCCAATTTAGAGCTATGA+GGG | + | chr5_2:39899874-39899893 | Msa0769980:intron | 35.0% |
| !! | TGATAACAACTTTAGGACCA+AGG | - | chr5_2:39899904-39899923 | None:intergenic | 35.0% |
| GTTGTTATCATGTGACTAGA+AGG | + | chr5_2:39899914-39899933 | Msa0769980:intron | 35.0% | |
| !! | AAAAAGGTACCGCTCTAAAT+TGG | - | chr5_2:39900047-39900066 | None:intergenic | 35.0% |
| ! | TAGTGGATATGTCACAATCA+CGG | + | chr5_2:39900660-39900679 | Msa0769980:intron | 35.0% |
| CATATGTTTAGTATGACGGT+GGG | - | chr5_2:39900763-39900782 | None:intergenic | 35.0% | |
| ACATATGTTTAGTATGACGG+TGG | - | chr5_2:39900764-39900783 | None:intergenic | 35.0% | |
| ! | GTTCTTTTCTGTGTCTTACA+TGG | - | chr5_2:39901237-39901256 | None:intergenic | 35.0% |
| TCAAAATCGCAACTAGTACA+TGG | - | chr5_2:39901462-39901481 | None:intergenic | 35.0% | |
| GCAAAAGGGAAAAAACATAG+GGG | - | chr5_2:39901511-39901530 | None:intergenic | 35.0% | |
| ! | CAAAGAATATGGTTTGAGAC+TGG | - | chr5_2:39901582-39901601 | None:intergenic | 35.0% |
| AAGACAATAAAAGCAAGTGG+GGG | - | chr5_2:39901642-39901661 | None:intergenic | 35.0% | |
| CAAGACAATAAAAGCAAGTG+GGG | - | chr5_2:39901643-39901662 | None:intergenic | 35.0% | |
| ATATTACCAACTGTGGCTAA+AGG | + | chr5_2:39902115-39902134 | Msa0769980:CDS | 35.0% | |
| ! | CGTTTGGTAATTGCAACTTT+AGG | - | chr5_2:39902181-39902200 | None:intergenic | 35.0% |
| GTTAAGTCGTAGCTAATCAA+AGG | - | chr5_2:39902218-39902237 | None:intergenic | 35.0% | |
| ! | GATTAGCTACGACTTAACAA+AGG | + | chr5_2:39902220-39902239 | Msa0769980:exon | 35.0% |
| !! | TGGTGGGTTAGAAAAATGGA+TGG | - | chr5_2:39899263-39899282 | None:intergenic | 40.0% |
| GCTAAACTAGTCCCAAATAG+AGG | - | chr5_2:39899523-39899542 | None:intergenic | 40.0% | |
| CGGCGAATTCAGCAAAATTA+CGG | + | chr5_2:39899624-39899643 | Msa0769980:intron | 40.0% | |
| CGAATTCAGCAAAATTACGG+TGG | + | chr5_2:39899627-39899646 | Msa0769980:intron | 40.0% | |
| AGCAACATAACCAAACCATC+AGG | - | chr5_2:39899726-39899745 | None:intergenic | 40.0% | |
| ! | TGCCAATTTAGAGCTATGAG+GGG | + | chr5_2:39899875-39899894 | Msa0769980:intron | 40.0% |
| !! | TACCCCTCATAGCTCTAAAT+TGG | - | chr5_2:39899880-39899899 | None:intergenic | 40.0% |
| ! | CTCCCATGGAATACTTTTCT+AGG | - | chr5_2:39900254-39900273 | None:intergenic | 40.0% |
| TATTCCATGGGAGACAAAGA+GGG | + | chr5_2:39900261-39900280 | Msa0769980:intron | 40.0% | |
| TTTCTAGGTGGAAACCAACA+AGG | - | chr5_2:39900312-39900331 | None:intergenic | 40.0% | |
| !! | ACAAATGCCAGGCTATTTCT+AGG | - | chr5_2:39900327-39900346 | None:intergenic | 40.0% |
| GAAATAGCCTGGCATTTGTT+TGG | + | chr5_2:39900328-39900347 | Msa0769980:intron | 40.0% | |
| TTTGCTACCAAACAAATGCC+AGG | - | chr5_2:39900338-39900357 | None:intergenic | 40.0% | |
| AAAACAGAGTCCCTCAATTG+AGG | - | chr5_2:39900528-39900547 | None:intergenic | 40.0% | |
| CCAGTCAAAAATAGTAACGC+TGG | - | chr5_2:39901045-39901064 | None:intergenic | 40.0% | |
| !!! | CCAGCGTTACTATTTTTGAC+TGG | + | chr5_2:39901042-39901061 | Msa0769980:intron | 40.0% |
| ! | CTTTTCTGTGTCTTACATGG+TGG | - | chr5_2:39901234-39901253 | None:intergenic | 40.0% |
| AGACAATAAAAGCAAGTGGG+GGG | - | chr5_2:39901641-39901660 | None:intergenic | 40.0% | |
| CAAGCATCAAGAGTTAGCAA+AGG | - | chr5_2:39902019-39902038 | None:intergenic | 40.0% | |
| TTCCAACACATTCACTTCCA+TGG | - | chr5_2:39902074-39902093 | None:intergenic | 40.0% | |
| GGTTAGAAGGTTCAATCGCA+TGG | - | chr5_2:39899371-39899390 | None:intergenic | 45.0% | |
| GAGTATTCAGCCTGATGGTT+TGG | + | chr5_2:39899713-39899732 | Msa0769980:intron | 45.0% | |
| !! | AGTGTGAGAAGTGCCAAAAG+AGG | + | chr5_2:39899787-39899806 | Msa0769980:CDS | 45.0% |
| !! | GTGTGAGAAGTGCCAAAAGA+GGG | + | chr5_2:39899788-39899807 | Msa0769980:CDS | 45.0% |
| TCATGTGACTAGAAGGTCAC+AGG | + | chr5_2:39899921-39899940 | Msa0769980:intron | 45.0% | |
| TAAATAGTGAGACCCCTTCC+TGG | + | chr5_2:39900011-39900030 | Msa0769980:intron | 45.0% | |
| TAAATTGGCAATCAGGGTCC+AGG | - | chr5_2:39900032-39900051 | None:intergenic | 45.0% | |
| ! | CCGCTCTAAATTGGCAATCA+GGG | - | chr5_2:39900038-39900057 | None:intergenic | 45.0% |
| CCCTGATTGCCAATTTAGAG+CGG | + | chr5_2:39900035-39900054 | Msa0769980:intron | 45.0% | |
| ! | ACCGCTCTAAATTGGCAATC+AGG | - | chr5_2:39900039-39900058 | None:intergenic | 45.0% |
| GTATTCCATGGGAGACAAAG+AGG | + | chr5_2:39900260-39900279 | Msa0769980:intron | 45.0% | |
| GTTTCCACCTAGAAATAGCC+TGG | + | chr5_2:39900317-39900336 | Msa0769980:intron | 45.0% | |
| !! | AATGCCAGGCTATTTCTAGG+TGG | - | chr5_2:39900324-39900343 | None:intergenic | 45.0% |
| TTCAGTAGAGACAGAGTCCA+TGG | + | chr5_2:39902054-39902073 | Msa0769980:intron | 45.0% | |
| GTCCATGGAAGTGAATGTGT+TGG | + | chr5_2:39902069-39902088 | Msa0769980:CDS | 45.0% | |
| GTGATTCCTTTAGCCACAGT+TGG | - | chr5_2:39902124-39902143 | None:intergenic | 45.0% | |
| CTGTGGCTAAAGGAATCACT+AGG | + | chr5_2:39902125-39902144 | Msa0769980:CDS | 45.0% | |
| GGGAGATGATTCCTGTTGAT+GGG | - | chr5_2:39902160-39902179 | None:intergenic | 45.0% | |
| AGGGAGATGATTCCTGTTGA+TGG | - | chr5_2:39902161-39902180 | None:intergenic | 45.0% | |
| !! | TTATATTATATAAATTCAAT+AGG | - | chr5_2:39899392-39899411 | None:intergenic | 5.0% |
| !!! | ATATAGTTTTTAAAAAATTA+CGG | - | chr5_2:39900693-39900712 | None:intergenic | 5.0% |
| !!! | TAATTTAATTGATTTTTTTT+TGG | - | chr5_2:39901960-39901979 | None:intergenic | 5.0% |
| AGAGCTATGAGGGGTAACCT+TGG | + | chr5_2:39899884-39899903 | Msa0769980:intron | 50.0% | |
| TTGGAAGAGGTGGTCCTTGT+TGG | + | chr5_2:39900295-39900314 | Msa0769980:intron | 50.0% | |
| AGGGGGGCTAATGCAAAGTT+AGG | + | chr5_2:39901716-39901735 | Msa0769980:intron | 50.0% | |
| GGGGGGCTAATGCAAAGTTA+GGG | + | chr5_2:39901717-39901736 | Msa0769980:intron | 50.0% | |
| GGGGGCTAATGCAAAGTTAG+GGG | + | chr5_2:39901718-39901737 | Msa0769980:intron | 50.0% | |
| GGCAAATTGCTCCCATCAAC+AGG | + | chr5_2:39902146-39902165 | Msa0769980:CDS | 50.0% | |
| TGGCAATCAGGGTCCAGGAA+GGG | - | chr5_2:39900027-39900046 | None:intergenic | 55.0% | |
| TTGGCAATCAGGGTCCAGGA+AGG | - | chr5_2:39900028-39900047 | None:intergenic | 55.0% | |
| TCCATGGGAGACAAAGAGGG+TGG | + | chr5_2:39900264-39900283 | Msa0769980:intron | 55.0% | |
| CCATGGGAGACAAAGAGGGT+GGG | + | chr5_2:39900265-39900284 | Msa0769980:intron | 55.0% | |
| CATGGGAGACAAAGAGGGTG+GGG | + | chr5_2:39900266-39900285 | Msa0769980:intron | 55.0% | |
| GGCAATCAGGGTCCAGGAAG+GGG | - | chr5_2:39900026-39900045 | None:intergenic | 60.0% | |
| CCCACCCTCTTTGTCTCCCA+TGG | - | chr5_2:39900268-39900287 | None:intergenic | 60.0% | |
| AAAGAGGGTGGGGCACACGT+TGG | + | chr5_2:39900276-39900295 | Msa0769980:intron | 60.0% | |
| GGTGGGGCACACGTTGGAAG+AGG | + | chr5_2:39900282-39900301 | Msa0769980:intron | 65.0% | |
| GGGGCACACGTTGGAAGAGG+TGG | + | chr5_2:39900285-39900304 | Msa0769980:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 39899240 | 39902336 | 39899240 | ID=Msa0769980;Name=Msa0769980 |
| chr5_2 | mRNA | 39899240 | 39902336 | 39899240 | ID=Msa0769980-mRNA-1;Parent=Msa0769980;Name=Msa0769980-mRNA-1;_AED=0.01;_eAED=0.01;_QI=214|1|1|1|0.5|0.66|3|111|121 |
| chr5_2 | exon | 39899240 | 39899570 | 39899240 | ID=Msa0769980-mRNA-1:exon:12756;Parent=Msa0769980-mRNA-1 |
| chr5_2 | exon | 39899756 | 39899837 | 39899756 | ID=Msa0769980-mRNA-1:exon:12757;Parent=Msa0769980-mRNA-1 |
| chr5_2 | exon | 39902059 | 39902336 | 39902059 | ID=Msa0769980-mRNA-1:exon:12758;Parent=Msa0769980-mRNA-1 |
| chr5_2 | five_prime_UTR | 39899240 | 39899453 | 39899240 | ID=Msa0769980-mRNA-1:five_prime_utr;Parent=Msa0769980-mRNA-1 |
| chr5_2 | CDS | 39899454 | 39899570 | 39899454 | ID=Msa0769980-mRNA-1:cds;Parent=Msa0769980-mRNA-1 |
| chr5_2 | CDS | 39899756 | 39899837 | 39899756 | ID=Msa0769980-mRNA-1:cds;Parent=Msa0769980-mRNA-1 |
| chr5_2 | CDS | 39902059 | 39902225 | 39902059 | ID=Msa0769980-mRNA-1:cds;Parent=Msa0769980-mRNA-1 |
| chr5_2 | three_prime_UTR | 39902226 | 39902336 | 39902226 | ID=Msa0769980-mRNA-1:three_prime_utr;Parent=Msa0769980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
