AlfalfaGEDB | Msa1447120

M. sativa cultivar zhongmu-4 / Msa1447120

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1447120	A0A072W234	86.795	1242	80	7	1	1242	1	1158	0.0	2108

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0021290	Msa1447120	0.806504	7.966110e-50	-8.615850e-47
Msa0073210	Msa1447120	0.805374	1.376903e-49	-8.615850e-47
Msa0113920	Msa1447120	0.802689	4.980823e-49	-8.615850e-47
Msa0183720	Msa1447120	0.999204	8.515377e-296	-8.615850e-47
Msa0385030	Msa1447120	0.824988	5.989484e-54	-8.615850e-47
Msa0437500	Msa1447120	0.959193	3.573032e-117	-8.615850e-47
Msa0479480	Msa1447120	0.803491	3.399290e-49	-8.615850e-47
Msa0656320	Msa1447120	0.807652	4.553546e-50	-8.615850e-47
Msa1124210	Msa1447120	0.809158	2.173021e-50	-8.615850e-47
Msa1369740	Msa1447120	0.832137	1.122114e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1447120	MtrunA17_Chr1g0210751	86.715	1242	80	8	1	1242	1	1157	0.0	2102
Msa1447120	MtrunA17_Chr4g0026411	29.953	1282	688	42	80	1239	37	1230	1.20e-99	345
Msa1447120	MtrunA17_Chr2g0299971	33.333	522	279	19	768	1239	764	1266	2.67e-54	207
Msa1447120	MtrunA17_Chr4g0070881	32.936	419	230	11	859	1239	883	1288	2.52e-38	156

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1447120	AT5G22450.3	32.653	392	183	11	859	1242	835	1153	2.32e-42	169
Msa1447120	AT5G22450.3	29.395	347	197	11	328	668	333	637	6.91e-22	103
Msa1447120	AT5G22450.3	30.682	264	175	5	50	311	4	261	1.24e-17	89.7
Msa1447120	AT5G22450.1	32.653	392	183	11	859	1242	835	1153	2.32e-42	169
Msa1447120	AT5G22450.1	29.395	347	197	11	328	668	333	637	6.91e-22	103
Msa1447120	AT5G22450.1	30.682	264	175	5	50	311	4	261	1.24e-17	89.7
Msa1447120	AT5G22450.2	32.653	392	183	11	859	1242	835	1153	2.32e-42	169
Msa1447120	AT5G22450.2	29.395	347	197	11	328	668	333	637	6.91e-22	103
Msa1447120	AT5G22450.2	30.682	264	175	5	50	311	4	261	1.24e-17	89.7
Msa1447120	AT4G29790.1	30.409	513	259	20	782	1239	736	1205	8.98e-36	148

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Find 315 sgRNAs with CRISPR-Local

Find 1164 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATAGAGACAACACCG+AGG	0.821156	tig0031598:-26157	Msa1447120:CDS
AAAGTTGGGTCTGTATCTCA+TGG	0.575701	tig0031598:-13305	Msa1447120:CDS
AAATAGGATGTCTTTAAACA+TGG	0.504700	tig0031598:+14034	None:intergenic
AAATGGGCAGAGGGGAAATT+CGG	0.454592	tig0031598:-27651	Msa1447120:CDS
AAATGGTGAAAGTAAATTAA+AGG	0.330480	tig0031598:-24450	Msa1447120:CDS
AAATTCGGTAAATAGTGATT+CGG	0.505843	tig0031598:-27636	Msa1447120:CDS
AACAAAGTAGAGACTGGAGA+TGG	0.636547	tig0031598:-24332	Msa1447120:CDS
AACAACAGCAGGAGCGAACA+CGG	0.568159	tig0031598:-20084	Msa1447120:CDS
AACGAGCCTCATTCAGTAAG+TGG	0.522312	tig0031598:-24767	Msa1447120:CDS
AACGTACCCATTTGGCACAA+TGG	0.526428	tig0031598:-24730	Msa1447120:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTGAACAACAACATTTCG+CGG	+	tig0031598:13232-13251	None:intergenic	30.0%
AAATTTCACACAAACTCAAC+AGG	+	tig0031598:13748-13767	None:intergenic	30.0%
AAGTATACTGTTACTAGTTC+AGG	-	tig0031598:14162-14181	Msa1447120:CDS	30.0%
ACAATAAAACAATGAGTTCG+AGG	+	tig0031598:14554-14573	None:intergenic	30.0%
CTGAGAAAAAAATAAAAGCG+CGG	+	tig0031598:14615-14634	None:intergenic	30.0%
TACACAGAAACTTTAATGGT+TGG	-	tig0031598:15197-15216	Msa1447120:intron	30.0%
ACACAGAAACTTTAATGGTT+GGG	-	tig0031598:15198-15217	Msa1447120:intron	30.0%
AATATACTGACAGTGTAAGT+AGG	+	tig0031598:15260-15279	None:intergenic	30.0%
GTCAATAAATGGCCATAATT+AGG	-	tig0031598:15744-15763	Msa1447120:intron	30.0%
AAATAAGACTTTGTGTAAGC+CGG	+	tig0031598:15946-15965	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0031598	gene	13118	28536	13118	ID=Msa1447120;Name=Msa1447120
tig0031598	mRNA	13118	28536	13118	ID=Msa1447120-mRNA-1;Parent=Msa1447120;Name=Msa1447120-mRNA-1;_AED=0.08;_eAED=0.08;_QI=85\|0.66\|0.5\|0.87\|0.93\|0.93\|16\|0\|1242
tig0031598	exon	13118	13764	13118	ID=Msa1447120-mRNA-1:exon:15764;Parent=Msa1447120-mRNA-1
tig0031598	exon	13943	14189	13943	ID=Msa1447120-mRNA-1:exon:15763;Parent=Msa1447120-mRNA-1
tig0031598	exon	14439	14496	14439	ID=Msa1447120-mRNA-1:exon:15762;Parent=Msa1447120-mRNA-1
tig0031598	exon	14613	14683	14613	ID=Msa1447120-mRNA-1:exon:15761;Parent=Msa1447120-mRNA-1
tig0031598	exon	14797	14871	14797	ID=Msa1447120-mRNA-1:exon:15760;Parent=Msa1447120-mRNA-1
tig0031598	exon	19972	20418	19972	ID=Msa1447120-mRNA-1:exon:15759;Parent=Msa1447120-mRNA-1
tig0031598	exon	22494	22655	22494	ID=Msa1447120-mRNA-1:exon:15758;Parent=Msa1447120-mRNA-1
tig0031598	exon	22804	22869	22804	ID=Msa1447120-mRNA-1:exon:15757;Parent=Msa1447120-mRNA-1
tig0031598	exon	22960	23080	22960	ID=Msa1447120-mRNA-1:exon:15756;Parent=Msa1447120-mRNA-1
tig0031598	exon	23616	23706	23616	ID=Msa1447120-mRNA-1:exon:15755;Parent=Msa1447120-mRNA-1
tig0031598	exon	24039	24094	24039	ID=Msa1447120-mRNA-1:exon:15754;Parent=Msa1447120-mRNA-1
tig0031598	exon	24194	24949	24194	ID=Msa1447120-mRNA-1:exon:15753;Parent=Msa1447120-mRNA-1
tig0031598	exon	25949	26223	25949	ID=Msa1447120-mRNA-1:exon:15752;Parent=Msa1447120-mRNA-1
tig0031598	exon	26779	27019	26779	ID=Msa1447120-mRNA-1:exon:15751;Parent=Msa1447120-mRNA-1
tig0031598	exon	27320	27786	27320	ID=Msa1447120-mRNA-1:exon:15750;Parent=Msa1447120-mRNA-1
tig0031598	exon	28503	28536	28503	ID=Msa1447120-mRNA-1:exon:15749;Parent=Msa1447120-mRNA-1
tig0031598	five_prime_UTR	28503	28536	28503	ID=Msa1447120-mRNA-1:five_prime_utr;Parent=Msa1447120-mRNA-1
tig0031598	five_prime_UTR	27736	27786	27736	ID=Msa1447120-mRNA-1:five_prime_utr;Parent=Msa1447120-mRNA-1
tig0031598	CDS	27320	27735	27320	ID=Msa1447120-mRNA-1:cds;Parent=Msa1447120-mRNA-1
tig0031598	CDS	26779	27019	26779	ID=Msa1447120-mRNA-1:cds;Parent=Msa1447120-mRNA-1
tig0031598	CDS	25949	26223	25949	ID=Msa1447120-mRNA-1:cds;Parent=Msa1447120-mRNA-1
tig0031598	CDS	24194	24949	24194	ID=Msa1447120-mRNA-1:cds;Parent=Msa1447120-mRNA-1
tig0031598	CDS	24039	24094	24039	ID=Msa1447120-mRNA-1:cds;Parent=Msa1447120-mRNA-1
tig0031598	CDS	23616	23706	23616	ID=Msa1447120-mRNA-1:cds;Parent=Msa1447120-mRNA-1
tig0031598	CDS	22960	23080	22960	ID=Msa1447120-mRNA-1:cds;Parent=Msa1447120-mRNA-1
tig0031598	CDS	22804	22869	22804	ID=Msa1447120-mRNA-1:cds;Parent=Msa1447120-mRNA-1
tig0031598	CDS	22494	22655	22494	ID=Msa1447120-mRNA-1:cds;Parent=Msa1447120-mRNA-1
tig0031598	CDS	19972	20418	19972	ID=Msa1447120-mRNA-1:cds;Parent=Msa1447120-mRNA-1
tig0031598	CDS	14797	14871	14797	ID=Msa1447120-mRNA-1:cds;Parent=Msa1447120-mRNA-1
tig0031598	CDS	14613	14683	14613	ID=Msa1447120-mRNA-1:cds;Parent=Msa1447120-mRNA-1
tig0031598	CDS	14439	14496	14439	ID=Msa1447120-mRNA-1:cds;Parent=Msa1447120-mRNA-1
tig0031598	CDS	13943	14189	13943	ID=Msa1447120-mRNA-1:cds;Parent=Msa1447120-mRNA-1
tig0031598	CDS	13118	13764	13118	ID=Msa1447120-mRNA-1:cds;Parent=Msa1447120-mRNA-1

Gene Sequence

>Msa1447120

ATGGCGCCGTTTGGTTCCAGCACAGCTAGTCGCGAGGAATCGACTTTCAAGGGGACTTTGTCAAATGGGCAGAGGGGAAATTCGGTAAATAGTGATTCGGATAGGTCTGCAAGAGTTCGTGAGGGTAATGACAGTCAGACGTTTGTTTCTGGTGCTAATATGTTGCAGGGAAGTTCGACATCTTCAGCTGATTCGGATCCATCAGCTCAGTCTTCAAAGTTGGATCCAAATCCTACAAGTCAAAAGTATACTGTTACTAGTTCAGGTGAGTTAAGACAGGTCCCGGGGACATCTCTTGGAAACAGCCTTGAAGATTGTGCTTTTCGAACCGCTAATCTGATCTCCCGCATACCAGTGGATTCGGAGAAATTGAAAGAATTCAAAGCACGAATGCAAGAGGCTTCTGGCAAGTCTAGATATGAAAAAAGTTTGGATGAATCTGTACACAAATTGAACAAAGTTTGGGAGGCTGTAAAACCAAAGAATCAATTTCAGAATGAGTTGTTGCCAAATGAAACGATAAGTGGGTCCCATTTATCAAAAATGGGAAGTCAGACTCATCGAAGCCCTACAGAGTTTGCAAATCCAAGATTAAAGAGCAGGCCTAAGAATGTCATTCTGAATAAGTGCATCCGTACATCAGCTATTGAGATACAGGCCGAAGGGCAAAACAATAGCTTTGGACAGCCTTTGGCAATCGGAAAGAATAGAGACAACACCGAGGATGGTGGTAAGGTTTGTGATGGTGTTGAAGAGAAGATTCAAAGGTTACCAGCAATTGAAGAAACACGGGAAAGAAAAGCAAAAAGAAAACCTTCCATGTGCACTGGCTCTGCTCGATCCATTGATGGGGAAGGAAAACCGAAAAGAGCTATGTATCTAAAGCGAGCTAATGAGTCTGGTGTGCAGTCTTGTGATGCCATAGGTTTGAGGTTTGTGGACCATGACAAAAATTATGCCGGTGGTATTTATCTACAGACAAAAGGCAAAGCTTCAAGGGCACCTCGAACTGGTGATTTGATAGCTGGAAATTCATCTTCCCTATCTCATTCTTCCGAAACACTCAAAGCCTTGGAGCAACCTTCAAATGTGAACGAGCCTCATTCAGTAAGTGGGACAATCAATGGTAAACGTACCCATTTGGCACAATGGGTTAGGCAGAGACCTCAAAAAATTTCTCGCACTCGAAGAGCAAATGTGGTATCCCCGTTCTTAAATTGTGATGAAATGCAAGTTCCATTAGAAGGTTGTTCCCCTTCTGAAGTTGATACTAGAACGAATTCTACTACAACTAGTGGACCACCAATATCCAAGGGTGCTATCAACAACATTCATTGCGATAGAATGAAAAATGTAAACAATTCATCCCCGACTAGATTATCTCAAAGTGAAGAATCTGGCGCTGGAGAAAATGGTGAAAGTAAATTAAAGGCGGAAGGATTGGACAGAAGCAAAGGGGATGAAAGAGCCACAAATAATTCCTGTAATATAAGTTCCTACATGTCAGTGACAGAAAAGGAAAAGCTGAACAAAGTAGAGACTGGAGATGGTCTGCGTAGGCAGTGTCGTGGCAGTAGTGACTTTTCGGTTTTGAAGAGTGGCTTTTCATCAACGGAAGAGAAGTTAGAGACTTTAACCTCGACAAAGCCAATTCGAAATATGAAGCCTTCTTCTGAAAAGAAAGCAAGTAGATCACGGCGATCACACAATAGTAAAGCTCTTGCTCATCTTGGAGATATTGCGGTTTTCAATGGTATTTCTGGAAAATTTTCCGCTTGCAAGATTTATGCAATCATGTTGCCTGTACATATTCAGTTTGAAATTGTTGTTGTATTAAACTTTATCTATATATATTGGTCCTTGACAGATATTGGCTGTTCTAGTTCATTTTGGAAGAAAGTGGAACCTATTTTTGCTCCTGTCAGCTTGGATGTCATAGTCTACTTGAAGCAGCTGGTTAAAACAATAGAGGATGATCAAAGATGTTTGTCTCAAGGGCTTTGCCTTCAAAGTGATGCCCCGTCAATAGTGCGAGATATCACCGCTATAGTGGCAGAGCGGAGGATCACCGCTACTGTGAGGTTAATAGCGGCACAGTTAACGATAATGGCCGCTCCAGGTGAGATCTCGGCGGAGCAGGGTCGTGGAGCAGGAGCGGCTTTAGCACCGCTATACTGTTTTAACGAGGGGGTTGTGCTTACGGACAAACTTTTGTCGCAAAGTCCTCTTGAGGGAGACAGAGGCAGAAGCATTTTAAATCAAACTGAATCAAAAGAGCCACCCTCAATGGTTGACACGGTTGATCAACATCGTGCAGGCAGCTTTCTGTGCAGTCAAATGAATTTAGAAAACAAACCAGCACCATTGTATCAAAGAGTATTGTCAGCTCTGATCATTGACGATCAAACTGAAGAAACCGTTGGAGATGAAAACATATCTTTTCTGTGTGAAAGAGATGATTCTCCTTTGGAGGCTTGGGATTTTGAGAACCAATTTAACAACAGCAGGAGCGAACACGGATGCAACACCGACACTGTTTCCTGTAAAGGGAATGCTACCTCTGAGCAAACGTGTATGGAGGATAAACTCTTGCTGGAGCTACAGAGTGTCGGCATTTATCCAGAACTAGTGCCTGATCTTGCTGATGGAGGTTGTGAAGCCGTTGATCAAACTATTATTCAATTGCAGAAGGAATGCTTCCAACAGCTCGCCAAAAAGAGAAAATACTTTATGAAACTTATTCAAGCAGTAGAAGAAGGCAGGGAAATGGAGCCACGGGCCCTTGAGCAAGTTGCTATGGACAAACTTGTTGAGTTGGCTTATAAGAAGAAGCTGGCGACTCGTGGAACTAGCGCTGCAAAGTATGGACTTTCTAAGGTCTCAAGGCCAGCTGCTTTGGGTTTCATGAAGAGGACTCTTGCTAGATGCCGGATGTTTGAGGAAACCGGGAAAAGTTGCTTTCAGAATCCCATGTTTAAAGACATCCTATTTGCAACTCCGGCTCGTGAAAACAATGCTGCATCAACACTTGCTGAAAACCTGCCACTTGCTCATAATTCTCAGCAAGAATGTGCACTATCAGGTTCATTTCCTTGCACGGAGCAAAATGTCTTGGGAAATCCAGACCATCCCTCTGACCTGGATGCTGCCAAGATTGGACCAATACTGAACGGGGGGAAGAAAGAAGAAGTGCTACTTGATGAGGTTGGTGCTAGTGCTTCTTTGAAACCTACATCAACTCTTGGCAATTCGTTCTTGGGTGGAGCAAAAGGAAAGAGGAGTGGAAGAGTGAGGAACAAAGACACTTCTCGGAGAAGTTCTGTTCAAAGAGGCGTTCGTTCTTCTGCAAGTAACACAAGGAGTGAGCGTAAAATAAAACCAAAGGCCAAACCAAAAACAGCTCAACTGTCTACTTCTGCAGAAGGATCTCTCGGCAAGTTGGTGGAAAATATTAATTCTGAAAATCAGTTGGCTTGTGGCTCTGGTCAACTGGTTTCCGATGATAACAACAGAAAAAGTAAAGTTGGGTCTGTATCTCATGGTAACGATTTTGCCGTTGAAACTGAGGAACCCATGGACTTAACAGACGTGCCTGAACTGGACTCCACAGAAGTAGGTGTAGGTAAAGACCTGGATTCTTGGTTAGACATTGATGTGGATGCTTTACAAGATGATGAGGTTGCGGTGGGCCTAGACATACCTATGGATGATTTGTCCATGGTTCTGTGA

Protein sequence

>Msa1447120

MAPFGSSTASREESTFKGTLSNGQRGNSVNSDSDRSARVREGNDSQTFVSGANMLQGSSTSSADSDPSAQSSKLDPNPTSQKYTVTSSGELRQVPGTSLGNSLEDCAFRTANLISRIPVDSEKLKEFKARMQEASGKSRYEKSLDESVHKLNKVWEAVKPKNQFQNELLPNETISGSHLSKMGSQTHRSPTEFANPRLKSRPKNVILNKCIRTSAIEIQAEGQNNSFGQPLAIGKNRDNTEDGGKVCDGVEEKIQRLPAIEETRERKAKRKPSMCTGSARSIDGEGKPKRAMYLKRANESGVQSCDAIGLRFVDHDKNYAGGIYLQTKGKASRAPRTGDLIAGNSSSLSHSSETLKALEQPSNVNEPHSVSGTINGKRTHLAQWVRQRPQKISRTRRANVVSPFLNCDEMQVPLEGCSPSEVDTRTNSTTTSGPPISKGAINNIHCDRMKNVNNSSPTRLSQSEESGAGENGESKLKAEGLDRSKGDERATNNSCNISSYMSVTEKEKLNKVETGDGLRRQCRGSSDFSVLKSGFSSTEEKLETLTSTKPIRNMKPSSEKKASRSRRSHNSKALAHLGDIAVFNGISGKFSACKIYAIMLPVHIQFEIVVVLNFIYIYWSLTDIGCSSSFWKKVEPIFAPVSLDVIVYLKQLVKTIEDDQRCLSQGLCLQSDAPSIVRDITAIVAERRITATVRLIAAQLTIMAAPGEISAEQGRGAGAALAPLYCFNEGVVLTDKLLSQSPLEGDRGRSILNQTESKEPPSMVDTVDQHRAGSFLCSQMNLENKPAPLYQRVLSALIIDDQTEETVGDENISFLCERDDSPLEAWDFENQFNNSRSEHGCNTDTVSCKGNATSEQTCMEDKLLLELQSVGIYPELVPDLADGGCEAVDQTIIQLQKECFQQLAKKRKYFMKLIQAVEEGREMEPRALEQVAMDKLVELAYKKKLATRGTSAAKYGLSKVSRPAALGFMKRTLARCRMFEETGKSCFQNPMFKDILFATPARENNAASTLAENLPLAHNSQQECALSGSFPCTEQNVLGNPDHPSDLDAAKIGPILNGGKKEEVLLDEVGASASLKPTSTLGNSFLGGAKGKRSGRVRNKDTSRRSSVQRGVRSSASNTRSERKIKPKAKPKTAQLSTSAEGSLGKLVENINSENQLACGSGQLVSDDNNRKSKVGSVSHGNDFAVETEEPMDLTDVPELDSTEVGVGKDLDSWLDIDVDALQDDEVAVGLDIPMDDLSMVL*