Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0113920 | XP_013467608.1 | 98.961 | 385 | 3 | 1 | 32 | 416 | 1 | 384 | 0.0 | 784 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0113920 | sp|Q8S9J2|SYYC1_ARATH | 81.034 | 348 | 64 | 1 | 69 | 416 | 40 | 385 | 0.0 | 608 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0113920 | A0A072VU52 | 98.961 | 385 | 3 | 1 | 32 | 416 | 1 | 384 | 0.0 | 784 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021230 | Msa0113920 | 0.837830 | 4.123887e-57 | -8.615850e-47 |
| Msa0040220 | Msa0113920 | 0.808764 | 2.638251e-50 | -8.615850e-47 |
| Msa0050860 | Msa0113920 | 0.806478 | 8.067030e-50 | -8.615850e-47 |
| Msa0070840 | Msa0113920 | 0.810831 | 9.479558e-51 | -8.615850e-47 |
| Msa0113920 | Msa0146580 | 0.807894 | 4.044667e-50 | -8.615850e-47 |
| Msa0113920 | Msa0183720 | 0.802908 | 4.488229e-49 | -8.615850e-47 |
| Msa0113920 | Msa0241080 | 0.841868 | 3.660572e-58 | -8.615850e-47 |
| Msa0113920 | Msa0426090 | 0.803610 | 3.210610e-49 | -8.615850e-47 |
| Msa0113920 | Msa0468660 | 0.806866 | 6.680369e-50 | -8.615850e-47 |
| Msa0113920 | Msa0472480 | 0.811253 | 7.680125e-51 | -8.615850e-47 |
| Msa0113920 | Msa0474570 | 0.846650 | 1.901264e-59 | -8.615850e-47 |
| Msa0113920 | Msa0475810 | 0.813020 | 3.162159e-51 | -8.615850e-47 |
| Msa0113920 | Msa0610000 | 0.800324 | 1.520479e-48 | -8.615850e-47 |
| Msa0113920 | Msa0614480 | 0.822150 | 2.763604e-53 | -8.615850e-47 |
| Msa0113920 | Msa0616580 | 0.801817 | 7.528750e-49 | -8.615850e-47 |
| Msa0113920 | Msa0655970 | 0.807828 | 4.176466e-50 | -8.615850e-47 |
| Msa0113920 | Msa0656320 | 0.852422 | 4.664595e-61 | -8.615850e-47 |
| Msa0113920 | Msa0699910 | 0.800371 | 1.487185e-48 | -8.615850e-47 |
| Msa0113920 | Msa0717380 | 0.800491 | 1.406022e-48 | -8.615850e-47 |
| Msa0113920 | Msa0758420 | 0.838585 | 2.634394e-57 | -8.615850e-47 |
| Msa0113920 | Msa0799830 | 0.825769 | 3.912266e-54 | -8.615850e-47 |
| Msa0113920 | Msa0880050 | 0.830483 | 2.862598e-55 | -8.615850e-47 |
| Msa0113920 | Msa0967880 | 0.811277 | 7.588857e-51 | -8.615850e-47 |
| Msa0113920 | Msa1041680 | 0.844073 | 9.474776e-59 | -8.615850e-47 |
| Msa0113920 | Msa1052000 | 0.804267 | 2.345354e-49 | -8.615850e-47 |
| Msa0113920 | Msa1054280 | 0.807837 | 4.158479e-50 | -8.615850e-47 |
| Msa0113920 | Msa1096760 | 0.821204 | 4.572631e-53 | -8.615850e-47 |
| Msa0113920 | Msa1124980 | 0.807896 | 4.039681e-50 | -8.615850e-47 |
| Msa0113920 | Msa1166570 | 0.843373 | 1.458604e-58 | -8.615850e-47 |
| Msa0113920 | Msa1167360 | 0.822171 | 2.732187e-53 | -8.615850e-47 |
| Msa0113920 | Msa1218170 | 0.805244 | 1.465945e-49 | -8.615850e-47 |
| Msa0113920 | Msa1218610 | 0.845792 | 3.255580e-59 | -8.615850e-47 |
| Msa0113920 | Msa1237040 | 0.812529 | 4.050092e-51 | -8.615850e-47 |
| Msa0113920 | Msa1325470 | 0.830334 | 3.114608e-55 | -8.615850e-47 |
| Msa0113920 | Msa1364110 | 0.812578 | 3.951677e-51 | -8.615850e-47 |
| Msa0113920 | Msa1423050 | 0.831384 | 1.721217e-55 | -8.615850e-47 |
| Msa0113920 | Msa1447120 | 0.802689 | 4.980823e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0113920 | MtrunA17_Chr1g0173201 | 98.961 | 385 | 3 | 1 | 32 | 416 | 1 | 384 | 0.0 | 784 |
| Msa0113920 | MtrunA17_Chr1g0146461 | 79.211 | 380 | 71 | 2 | 37 | 416 | 1 | 372 | 0.0 | 639 |
| Msa0113920 | MtrunA17_Chr1g0146461 | 56.164 | 146 | 53 | 3 | 5 | 145 | 342 | 481 | 4.57e-39 | 146 |
| Msa0113920 | MtrunA17_Chr1g0146441 | 85.401 | 137 | 20 | 0 | 280 | 416 | 1 | 137 | 2.36e-82 | 248 |
| Msa0113920 | MtrunA17_Chr1g0146451 | 60.714 | 84 | 33 | 0 | 161 | 244 | 1 | 84 | 9.38e-30 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0113920 | AT2G33840.1 | 81.034 | 348 | 64 | 1 | 69 | 416 | 40 | 385 | 0.0 | 608 |
| Msa0113920 | AT1G28350.1 | 69.973 | 373 | 110 | 1 | 44 | 416 | 1 | 371 | 0.0 | 561 |
| Msa0113920 | AT1G28350.1 | 68.528 | 394 | 119 | 3 | 23 | 416 | 360 | 748 | 0.0 | 548 |
| Msa0113920 | AT1G28350.2 | 69.973 | 373 | 110 | 1 | 44 | 416 | 1 | 371 | 0.0 | 561 |
| Msa0113920 | AT1G28350.2 | 68.528 | 394 | 119 | 3 | 23 | 416 | 360 | 748 | 0.0 | 548 |
| Msa0113920 | AT1G28350.3 | 66.344 | 413 | 133 | 4 | 5 | 416 | 275 | 682 | 0.0 | 548 |
| Msa0113920 | AT1G28350.3 | 74.267 | 307 | 77 | 1 | 110 | 416 | 1 | 305 | 5.66e-170 | 492 |
Find 88 sgRNAs with CRISPR-Local
Find 426 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTTGGTTTGCAGGCTTAC+AGG | 0.188149 | 1_3:+30089454 | Msa0113920:intron |
| TGCTAAGCTTAATAACAAAA+TGG | 0.199810 | 1_3:+30086628 | Msa0113920:CDS |
| TTACAGGTGTAGCCAAATTA+TGG | 0.234560 | 1_3:+30086928 | Msa0113920:intron |
| CTCTTCATCCTCCATGTAAA+TGG | 0.251052 | 1_3:-30087931 | None:intergenic |
| GCCGCTACTTGATCGAAATT+TGG | 0.252289 | 1_3:+30086681 | Msa0113920:CDS |
| GTTCACTCCGTCCCATAATT+TGG | 0.255447 | 1_3:-30086940 | None:intergenic |
| AATTACTGCGGTGCTGGATT+TGG | 0.273627 | 1_3:-30082960 | None:intergenic |
| ACTTCGACAAAGCCGGTTTA+AGG | 0.288565 | 1_3:-30088645 | None:intergenic |
| GGGTTTCCTTCCACAATCTT+TGG | 0.305525 | 1_3:-30088319 | None:intergenic |
| TGCGGTGCTGGATTTGGATT+TGG | 0.330970 | 1_3:-30082954 | None:intergenic |
| ACAACCTTAAAAGAATTATC+AGG | 0.345241 | 1_3:+30086819 | Msa0113920:CDS |
| TCCATGTAAATGGATGATAA+AGG | 0.366918 | 1_3:-30087921 | None:intergenic |
| CCCTTTATCATCCATTTACA+TGG | 0.371480 | 1_3:+30087920 | Msa0113920:CDS |
| CTGGTTGCCTAGTCAAAATA+TGG | 0.374269 | 1_3:+30086591 | Msa0113920:CDS |
| AGTATTGTGATGTTATTAAG+AGG | 0.375155 | 1_3:+30087740 | Msa0113920:CDS |
| TCAAAATATGGATTGCTGAT+TGG | 0.384798 | 1_3:+30086603 | Msa0113920:CDS |
| TTGAAGAAAATTGAGATTGT+TGG | 0.389262 | 1_3:+30086659 | Msa0113920:CDS |
| TACAGGTGTAGCCAAATTAT+GGG | 0.395127 | 1_3:+30086929 | Msa0113920:intron |
| GCTAAGCTTAATAACAAAAT+GGG | 0.426202 | 1_3:+30086629 | Msa0113920:CDS |
| ATGTTCTGACTATAGACTTC+AGG | 0.426285 | 1_3:+30089488 | Msa0113920:exon |
| TTCTCTGATCCATTCCCAAT+TGG | 0.433325 | 1_3:-30087696 | None:intergenic |
| ATAGGCCGACATCTGCCAAT+TGG | 0.434224 | 1_3:+30087681 | Msa0113920:intron |
| CTTTGGTTTGCAGGCTTACA+GGG | 0.434499 | 1_3:+30089455 | Msa0113920:intron |
| AGCCGCCGCCGCAGTAGCAC+TGG | 0.438411 | 1_3:+30082896 | Msa0113920:CDS |
| CCATGTAAATGGATGATAAA+GGG | 0.439796 | 1_3:-30087920 | None:intergenic |
| TCGAAATTTGGAAAGCCGTT+GGG | 0.440768 | 1_3:+30086693 | Msa0113920:CDS |
| TTGGAAATATGCAGCCTGTA+AGG | 0.446216 | 1_3:+30089287 | Msa0113920:intron |
| GAAAGCCGTTGGGATGGATC+TGG | 0.454876 | 1_3:+30086703 | Msa0113920:CDS |
| TTAAATATCTTATCTTACCT+TGG | 0.454939 | 1_3:+30088356 | Msa0113920:CDS |
| TAGGCCGACATCTGCCAATT+GGG | 0.459139 | 1_3:+30087682 | Msa0113920:intron |
| ATCGAAATTTGGAAAGCCGT+TGG | 0.468318 | 1_3:+30086692 | Msa0113920:CDS |
| ACATCCAGCTGACCTTAAAC+CGG | 0.474408 | 1_3:+30088633 | Msa0113920:CDS |
| TGGACGAATGCACATTGCTC+AGG | 0.484195 | 1_3:+30083187 | Msa0113920:CDS |
| TCTTGCCCTTGTTGTAGACC+AGG | 0.488474 | 1_3:-30087879 | None:intergenic |
| TTTCCTTCCACAATCTTTGG+CGG | 0.490487 | 1_3:-30088316 | None:intergenic |
| TCAAAACCATCGTAACAAAC+AGG | 0.493209 | 1_3:-30083158 | None:intergenic |
| TTCAATGACTTCGACAAAGC+CGG | 0.497005 | 1_3:-30088652 | None:intergenic |
| TGAGTATTGGCCTCTTGTGT+TGG | 0.497158 | 1_3:+30086781 | Msa0113920:CDS |
| GTGGAGCGTAATGCAGATAA+TGG | 0.504803 | 1_3:+30088394 | Msa0113920:CDS |
| TGCTGGATTTGGATTTGGAT+TGG | 0.505166 | 1_3:-30082949 | None:intergenic |
| TTCCTTCCACAATCTTTGGC+GGG | 0.512138 | 1_3:-30088315 | None:intergenic |
| ATTGAAATTCCGACCGACGC+TGG | 0.513517 | 1_3:+30082822 | Msa0113920:CDS |
| TGTGGAAGGAAACCCATGCT+TGG | 0.518682 | 1_3:+30088327 | Msa0113920:CDS |
| ATGCCAGAGCTGATGAGTAT+TGG | 0.524296 | 1_3:+30086768 | Msa0113920:CDS |
| TATTTAATGTACTCCAAGCA+TGG | 0.526777 | 1_3:-30088340 | None:intergenic |
| AATAACATCACAATACTCTC+TGG | 0.528355 | 1_3:-30087734 | None:intergenic |
| ATGTCAGCACACTGCATGCA+TGG | 0.529807 | 1_3:-30086995 | None:intergenic |
| ATTTAATGTACTCCAAGCAT+GGG | 0.531281 | 1_3:-30088339 | None:intergenic |
| TTCCAGTGCTACTGCGGCGG+CGG | 0.533461 | 1_3:-30082898 | None:intergenic |
| CCTCAGCCTGTTTGTTACGA+TGG | 0.535553 | 1_3:+30083152 | Msa0113920:CDS |
| CGACATCTGCCAATTGGGAA+TGG | 0.537270 | 1_3:+30087687 | Msa0113920:CDS |
| TTTGAGATCGTGAGAAGCAT+CGG | 0.543232 | 1_3:+30083080 | Msa0113920:CDS |
| AAAGCCGGTTTAAGGTCAGC+TGG | 0.544325 | 1_3:-30088637 | None:intergenic |
| AGGCCAATACTCATCAGCTC+TGG | 0.554004 | 1_3:-30086771 | None:intergenic |
| TCTATAGTCAGAACATTACT+TGG | 0.561058 | 1_3:-30089481 | None:intergenic |
| CATTTACATGGAGGATGAAG+AGG | 0.563565 | 1_3:+30087932 | Msa0113920:CDS |
| TAACTCTCCGCTTTCATAGT+CGG | 0.564786 | 1_3:-30088611 | None:intergenic |
| AATTTGGAAAGCCGTTGGGA+TGG | 0.569257 | 1_3:+30086697 | Msa0113920:CDS |
| TCCAAATTTCGATCAAGTAG+CGG | 0.571639 | 1_3:-30086682 | None:intergenic |
| TTACGGTGTGATAAGATGAC+GGG | 0.572281 | 1_3:-30087772 | None:intergenic |
| CGTGCATAGGTTGTTGAGTG+CGG | 0.576234 | 1_3:+30083049 | Msa0113920:intron |
| CATTCCCAATTGGCAGATGT+CGG | 0.585557 | 1_3:-30087686 | None:intergenic |
| TACTATCGCAATGCCAGCGT+CGG | 0.586492 | 1_3:-30082835 | None:intergenic |
| ATCGCAATGCCAGCGTCGGT+CGG | 0.590400 | 1_3:-30082831 | None:intergenic |
| ATGTTACCTGGTCTACAACA+AGG | 0.591222 | 1_3:+30087873 | Msa0113920:CDS |
| AAGCTTAATAACAAAATGGG+TGG | 0.593404 | 1_3:+30086632 | Msa0113920:CDS |
| TGCCCGCCAAAGATTGTGGA+AGG | 0.597557 | 1_3:+30088313 | Msa0113920:CDS |
| CCATCGTAACAAACAGGCTG+AGG | 0.597768 | 1_3:-30083152 | None:intergenic |
| ATATTGCCCGCCAAAGATTG+TGG | 0.598009 | 1_3:+30088309 | Msa0113920:CDS |
| GTGAACAAGCTAACATCCGC+TGG | 0.599305 | 1_3:+30086572 | Msa0113920:CDS |
| GTCATTGAATAAAATTCTAG+AGG | 0.600216 | 1_3:+30088666 | Msa0113920:CDS |
| TCCTTCCAGATCCATCCCAA+CGG | 0.609022 | 1_3:-30086708 | None:intergenic |
| CAATGATTCCAGTGCTACTG+CGG | 0.621909 | 1_3:-30082904 | None:intergenic |
| ATTACGGTGTGATAAGATGA+CGG | 0.622032 | 1_3:-30087773 | None:intergenic |
| GCAATGTGCATTCGTCCAGA+AGG | 0.623405 | 1_3:-30083182 | None:intergenic |
| TGGATAGAATATTTGAGCAG+CGG | 0.624441 | 1_3:-30086975 | None:intergenic |
| GTTGGGATGGATCTGGAAGG+AGG | 0.625900 | 1_3:+30086710 | Msa0113920:CDS |
| TTGATTGCCGACTATGAAAG+CGG | 0.628637 | 1_3:+30088604 | Msa0113920:CDS |
| TGTTACCTGGTCTACAACAA+GGG | 0.634319 | 1_3:+30087874 | Msa0113920:CDS |
| TGAGCTATATCCAACACAAG+AGG | 0.641928 | 1_3:-30086791 | None:intergenic |
| TTTATCATCCATTTACATGG+AGG | 0.642941 | 1_3:+30087923 | Msa0113920:CDS |
| TTGGTTTAACGAGTTTACTG+TGG | 0.643574 | 1_3:+30088375 | Msa0113920:CDS |
| TGATTCCAGTGCTACTGCGG+CGG | 0.646365 | 1_3:-30082901 | None:intergenic |
| GGTAGATGATGATTCAGCGA+CGG | 0.660169 | 1_3:-30082928 | None:intergenic |
| GCCGTTGGGATGGATCTGGA+AGG | 0.662319 | 1_3:+30086707 | Msa0113920:CDS |
| GGTGTAGCCAAATTATGGGA+CGG | 0.675643 | 1_3:+30086933 | Msa0113920:intron |
| ACAGTAAACTCGTTAAACCA+AGG | 0.685168 | 1_3:-30088373 | None:intergenic |
| GAGCGTAATGCAGATAATGG+TGG | 0.730139 | 1_3:+30088397 | Msa0113920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAACAAAAAAATACA+AGG | - | chr1_3:30083654-30083673 | None:intergenic | 10.0% |
| !!! | GATAAAAAAGTTTTTTTTTT+TGG | + | chr1_3:30085549-30085568 | Msa0113920:intron | 10.0% |
| !!! | TTTTAATTTTTTATGAGTTT+TGG | - | chr1_3:30085703-30085722 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTATGTATATCT+AGG | + | chr1_3:30086529-30086548 | Msa0113920:intron | 10.0% |
| !!! | TTTTTTTTTATGTATATCTA+GGG | + | chr1_3:30086530-30086549 | Msa0113920:intron | 10.0% |
| !! | AAATAAAAATTAATATCATC+TGG | - | chr1_3:30087549-30087568 | None:intergenic | 10.0% |
| !!! | GAATATTTTTATCTTAAAAT+AGG | + | chr1_3:30087663-30087682 | Msa0113920:intron | 10.0% |
| !! | AATTTAAAAATTTAATGTGA+TGG | + | chr1_3:30088831-30088850 | Msa0113920:intron | 10.0% |
| !!! | TTGGAAATTTTATTATAATA+AGG | - | chr1_3:30089049-30089068 | None:intergenic | 10.0% |
| !! | AAATAATGAAAATTGAAAAC+AGG | - | chr1_3:30083019-30083038 | None:intergenic | 15.0% |
| !! | ATTACTATGTTATTACTTAA+TGG | - | chr1_3:30083474-30083493 | None:intergenic | 15.0% |
| !!! | AATTTTTGTTCTGTTTTAAT+TGG | + | chr1_3:30083743-30083762 | Msa0113920:intron | 15.0% |
| !! | TAAAATAAACTATTCTACAT+TGG | + | chr1_3:30083783-30083802 | Msa0113920:intron | 15.0% |
| !!! | TACATTTTCAAAAGAATAAA+AGG | - | chr1_3:30083976-30083995 | None:intergenic | 15.0% |
| !!! | TAGAACAATTATTTTGAATA+GGG | - | chr1_3:30084934-30084953 | None:intergenic | 15.0% |
| !!! | TTAGAACAATTATTTTGAAT+AGG | - | chr1_3:30084935-30084954 | None:intergenic | 15.0% |
| !!! | TATTTTAAAAACCAACATTT+TGG | + | chr1_3:30085234-30085253 | Msa0113920:intron | 15.0% |
| !!! | TTTGAGTTTATTGATTTTAA+TGG | + | chr1_3:30085415-30085434 | Msa0113920:intron | 15.0% |
| !!! | ATTTTCCGAATTTAAATTTA+TGG | + | chr1_3:30085469-30085488 | Msa0113920:intron | 15.0% |
| !! | TTCATCCATAAATTTAAATT+CGG | - | chr1_3:30085477-30085496 | None:intergenic | 15.0% |
| !! | AACTCATAAAAAATTAAAAC+TGG | + | chr1_3:30085704-30085723 | Msa0113920:intron | 15.0% |
| !! | ACTCATAAAAAATTAAAACT+GGG | + | chr1_3:30085705-30085724 | Msa0113920:intron | 15.0% |
| !!! | TATTTTAAAAACCAACATTT+TGG | - | chr1_3:30085234-30085253 | None:intergenic | 15.0% |
| !!! | AAAATGTTGGTTTTTAAAAT+AGG | + | chr1_3:30085732-30085751 | Msa0113920:intron | 15.0% |
| !!! | AAATGTTGGTTTTTAAAATA+GGG | + | chr1_3:30085733-30085752 | Msa0113920:intron | 15.0% |
| !! | ATTTAAATAGATATTGAAGA+AGG | - | chr1_3:30086002-30086021 | None:intergenic | 15.0% |
| !!! | ATTTTTAATTTAGTTGTTGA+AGG | + | chr1_3:30086470-30086489 | Msa0113920:intron | 15.0% |
| !!! | CATTTTCATATCATAATAAA+AGG | - | chr1_3:30086847-30086866 | None:intergenic | 15.0% |
| !! | TAAATTTGTCATTACTAAAA+AGG | + | chr1_3:30087975-30087994 | Msa0113920:intron | 15.0% |
| !!! | GATTTCTTTTAAAAATTAAG+AGG | - | chr1_3:30088731-30088750 | None:intergenic | 15.0% |
| !!! | TGTAACATTTTCTTATAAAT+AGG | - | chr1_3:30089085-30089104 | None:intergenic | 15.0% |
| !!! | AAAGAAATTTGATAGCAAAT+GGG | - | chr1_3:30083580-30083599 | None:intergenic | 20.0% |
| !!! | TTATTGTTTTGTTTTAGTTC+CGG | - | chr1_3:30083835-30083854 | None:intergenic | 20.0% |
| !! | ACAAAAAGCAAAATATTACA+AGG | + | chr1_3:30083895-30083914 | Msa0113920:intron | 20.0% |
| !!! | TTATTCTTTTGAAAATGTAG+AGG | + | chr1_3:30083977-30083996 | Msa0113920:intron | 20.0% |
| !!! | TCTTATCATACAATTAGTTT+AGG | - | chr1_3:30084460-30084479 | None:intergenic | 20.0% |
| !!! | ATGTTGGTTTTTAAAATAGA+GGG | - | chr1_3:30085232-30085251 | None:intergenic | 20.0% |
| !!! | AATGTTGGTTTTTAAAATAG+AGG | - | chr1_3:30085734-30085753 | None:intergenic | 20.0% |
| !!! | TTGATTTTTGAAGATGTTTT+AGG | + | chr1_3:30085368-30085387 | Msa0113920:intron | 20.0% |
| !!! | GATTAATGGAATACTTTTTT+TGG | + | chr1_3:30085527-30085546 | Msa0113920:intron | 20.0% |
| !! | GTAAAAAAAATTGTCCATTT+AGG | + | chr1_3:30085613-30085632 | Msa0113920:intron | 20.0% |
| !! | CTCATAAAAAATTAAAACTG+GGG | + | chr1_3:30085706-30085725 | Msa0113920:intron | 20.0% |
| !!! | AATGTTGGTTTTTAAAATAG+GGG | + | chr1_3:30085734-30085753 | Msa0113920:intron | 20.0% |
| !!! | TTTAAGCCAATTTACTTTTT+AGG | + | chr1_3:30085800-30085819 | Msa0113920:intron | 20.0% |
| !! | CTTTATCTTATAATTGAAAC+CGG | + | chr1_3:30085937-30085956 | Msa0113920:intron | 20.0% |
| !! | TTTAAATTAACATAGTGCAT+TGG | + | chr1_3:30086015-30086034 | Msa0113920:intron | 20.0% |
| !! | TTTGATTGTGTAAAAACATA+CGG | - | chr1_3:30086083-30086102 | None:intergenic | 20.0% |
| !! | AAAGAATCAAAATTAGATGT+AGG | + | chr1_3:30086304-30086323 | Msa0113920:intron | 20.0% |
| !! | TTCATTTATGGAAAAAACTT+AGG | - | chr1_3:30087350-30087369 | None:intergenic | 20.0% |
| !!! | TTTTTCCATAAATGAATACA+TGG | + | chr1_3:30087354-30087373 | Msa0113920:intron | 20.0% |
| !! | AAAAACCATGTATTCATTTA+TGG | - | chr1_3:30087362-30087381 | None:intergenic | 20.0% |
| !! | AAACTATAAGAAACTAAGAT+GGG | - | chr1_3:30087507-30087526 | None:intergenic | 20.0% |
| !! | AAAACAAAACATAACTAGAT+AGG | - | chr1_3:30088015-30088034 | None:intergenic | 20.0% |
| !!! | CAGAAAAATATTTTGAATGA+AGG | + | chr1_3:30088102-30088121 | Msa0113920:intron | 20.0% |
| !!! | ATTTTGAATGAAGGAATAAA+AGG | + | chr1_3:30088111-30088130 | Msa0113920:intron | 20.0% |
| !!! | TTTTATTTTCACATTCACTT+CGG | - | chr1_3:30088284-30088303 | None:intergenic | 20.0% |
| !! | AGTGAATGTGAAAATAAAAA+AGG | + | chr1_3:30088285-30088304 | Msa0113920:CDS | 20.0% |
| !! | TTAAATATCTTATCTTACCT+TGG | + | chr1_3:30088356-30088375 | Msa0113920:CDS | 20.0% |
| !! | GAAACTACTACTATTATAAA+TGG | - | chr1_3:30088466-30088485 | None:intergenic | 20.0% |
| !!! | TTCTTTTAAAAATTAAGAGG+AGG | - | chr1_3:30088728-30088747 | None:intergenic | 20.0% |
| !!! | AATAGGATCAACAAATTTTT+TGG | - | chr1_3:30089068-30089087 | None:intergenic | 20.0% |
| !!! | AGAAAATGTTACAACTTTTA+CGG | + | chr1_3:30089092-30089111 | Msa0113920:intron | 20.0% |
| !! | TAGTATTATCAGAAAAATAG+TGG | + | chr1_3:30089117-30089136 | Msa0113920:intron | 20.0% |
| !! | AGTATTATCAGAAAAATAGT+GGG | + | chr1_3:30089118-30089137 | Msa0113920:intron | 20.0% |
| !! | ACATTTAGTAAACAAAGTAA+AGG | - | chr1_3:30089260-30089279 | None:intergenic | 20.0% |
| !!! | TTTACTAAATGTTTGTTTCT+TGG | + | chr1_3:30089268-30089287 | Msa0113920:intron | 20.0% |
| !!! | TATTTTACTAATTCTAAACG+AGG | - | chr1_3:30089369-30089388 | None:intergenic | 20.0% |
| !!! | CATTGTTTAGAATACATTTT+TGG | + | chr1_3:30089547-30089566 | Msa0113920:three_prime_UTR | 20.0% |
| ! | TATGAAAATAAGCTGAAAAC+AGG | - | chr1_3:30083228-30083247 | None:intergenic | 25.0% |
| !!! | AATAAGTTGATTATCCAATC+AGG | + | chr1_3:30083313-30083332 | Msa0113920:intron | 25.0% |
| !!! | ATACATTTGTTTTCCACTAT+GGG | - | chr1_3:30083339-30083358 | None:intergenic | 25.0% |
| !!! | TATACATTTGTTTTCCACTA+TGG | - | chr1_3:30083340-30083359 | None:intergenic | 25.0% |
| !! | ACTTAATGGTAATGAACAAT+TGG | - | chr1_3:30083460-30083479 | None:intergenic | 25.0% |
| !! | CAAAGAAATTTGATAGCAAA+TGG | - | chr1_3:30083581-30083600 | None:intergenic | 25.0% |
| !!! | CATTTGCTATCAAATTTCTT+TGG | + | chr1_3:30083579-30083598 | Msa0113920:intron | 25.0% |
| ! | TCAAAAATGATATGCTTGAA+GGG | - | chr1_3:30083689-30083708 | None:intergenic | 25.0% |
| !!! | AGCATATCATTTTTGAGTTT+TGG | + | chr1_3:30083693-30083712 | Msa0113920:intron | 25.0% |
| !!! | TTAATTGGTCCTTATTTTGA+CGG | + | chr1_3:30083758-30083777 | Msa0113920:intron | 25.0% |
| !!! | TATTTTAGTCCGTCAAAATA+AGG | - | chr1_3:30083770-30083789 | None:intergenic | 25.0% |
| !! | CCAATATGAATAAATTTTGC+CGG | + | chr1_3:30083813-30083832 | Msa0113920:intron | 25.0% |
| ! | CAAGGACAAAAAACAAAAAA+TGG | + | chr1_3:30083913-30083932 | Msa0113920:intron | 25.0% |
| !! | AGAGATTTGTTCTTTGAAAA+AGG | + | chr1_3:30084005-30084024 | Msa0113920:intron | 25.0% |
| ! | CTTAATAATTATAGCAACCT+AGG | - | chr1_3:30084304-30084323 | None:intergenic | 25.0% |
| ! | TGATAAGAATAGTAATTCAG+AGG | + | chr1_3:30084472-30084491 | Msa0113920:intron | 25.0% |
| !!! | ACAATTATTTTGAATAGGGA+TGG | - | chr1_3:30084930-30084949 | None:intergenic | 25.0% |
| ! | ATATATCAAGACTAATTCAG+AGG | - | chr1_3:30085006-30085025 | None:intergenic | 25.0% |
| !!! | AGTCTTATTAAATTGAGTGA+TGG | + | chr1_3:30085033-30085052 | Msa0113920:intron | 25.0% |
| ! | GTTGGATAATTCTTATTGTA+GGG | - | chr1_3:30085097-30085116 | None:intergenic | 25.0% |
| ! | AGTTGGATAATTCTTATTGT+AGG | - | chr1_3:30085098-30085117 | None:intergenic | 25.0% |
| ! | AAGAATTATCCAACTAATTG+TGG | + | chr1_3:30085103-30085122 | Msa0113920:intron | 25.0% |
| ! | AAATGCATGAATTATTGTTG+TGG | - | chr1_3:30085178-30085197 | None:intergenic | 25.0% |
| !!! | TGTTGGTTTTTAAAATAGAG+GGG | - | chr1_3:30085231-30085250 | None:intergenic | 25.0% |
| !!! | ATGTTGGTTTTTAAAATAGG+GGG | + | chr1_3:30085735-30085754 | Msa0113920:intron | 25.0% |
| !! | AACTCCCTTTTTATGAAAAA+AGG | + | chr1_3:30085763-30085782 | Msa0113920:intron | 25.0% |
| !! | ACTCCCTTTTTATGAAAAAA+GGG | + | chr1_3:30085764-30085783 | Msa0113920:intron | 25.0% |
| ! | TCAGAACCTAAAAAGTAAAT+TGG | - | chr1_3:30085809-30085828 | None:intergenic | 25.0% |
| ! | TGATGTATCAAGTCTATATT+AGG | - | chr1_3:30085852-30085871 | None:intergenic | 25.0% |
| ! | AAGGATAAAGAAAAAACAGT+TGG | - | chr1_3:30085983-30086002 | None:intergenic | 25.0% |
| !! | ATACTACGGAATCATTTTAA+GGG | - | chr1_3:30086107-30086126 | None:intergenic | 25.0% |
| !! | AATACTACGGAATCATTTTA+AGG | - | chr1_3:30086108-30086127 | None:intergenic | 25.0% |
| ! | ATCTTATGGTAGTAATACTA+CGG | - | chr1_3:30086121-30086140 | None:intergenic | 25.0% |
| ! | AGAAATAAATAAATCGCTGT+GGG | - | chr1_3:30086212-30086231 | None:intergenic | 25.0% |
| ! | AAGAAATAAATAAATCGCTG+TGG | - | chr1_3:30086213-30086232 | None:intergenic | 25.0% |
| !!! | TGGATAATTTTTTCGATCTA+CGG | + | chr1_3:30086352-30086371 | Msa0113920:intron | 25.0% |
| ! | TGCTAAGCTTAATAACAAAA+TGG | + | chr1_3:30086628-30086647 | Msa0113920:CDS | 25.0% |
| ! | GCTAAGCTTAATAACAAAAT+GGG | + | chr1_3:30086629-30086648 | Msa0113920:CDS | 25.0% |
| ! | TTGAAGAAAATTGAGATTGT+TGG | + | chr1_3:30086659-30086678 | Msa0113920:CDS | 25.0% |
| ! | ACAACCTTAAAAGAATTATC+AGG | + | chr1_3:30086819-30086838 | Msa0113920:CDS | 25.0% |
| ! | AATGCAAGCATCAATATATA+GGG | - | chr1_3:30087050-30087069 | None:intergenic | 25.0% |
| ! | TATAGAATGATCTCCTTATT+AGG | + | chr1_3:30087127-30087146 | Msa0113920:intron | 25.0% |
| ! | ACTATCAGAGAAATAAATGA+AGG | + | chr1_3:30087175-30087194 | Msa0113920:intron | 25.0% |
| ! | CTATCAGAGAAATAAATGAA+GGG | + | chr1_3:30087176-30087195 | Msa0113920:intron | 25.0% |
| ! | AACTAAAAATACACCTTTGT+TGG | + | chr1_3:30087242-30087261 | Msa0113920:intron | 25.0% |
| !! | AACAAACTTTGAGAAAATGA+TGG | + | chr1_3:30087269-30087288 | Msa0113920:intron | 25.0% |
| ! | GAAACTATAAGAAACTAAGA+TGG | - | chr1_3:30087508-30087527 | None:intergenic | 25.0% |
| ! | AGTATTGTGATGTTATTAAG+AGG | + | chr1_3:30087740-30087759 | Msa0113920:CDS | 25.0% |
| ! | TGTGATTTGATATAAGATTG+TGG | + | chr1_3:30088135-30088154 | Msa0113920:intron | 25.0% |
| ! | AATGAAAATCTTTACCAGAA+AGG | - | chr1_3:30088170-30088189 | None:intergenic | 25.0% |
| ! | GTCATTGAATAAAATTCTAG+AGG | + | chr1_3:30088666-30088685 | Msa0113920:CDS | 25.0% |
| !! | CAGAATTGTCTTATTAGTAT+TGG | + | chr1_3:30088788-30088807 | Msa0113920:intron | 25.0% |
| !! | TCTCTGATTTTACAATTCTT+TGG | + | chr1_3:30088915-30088934 | Msa0113920:intron | 25.0% |
| ! | TTATTATAATAAGGACCAGA+GGG | - | chr1_3:30089040-30089059 | None:intergenic | 25.0% |
| ! | TTTATTATAATAAGGACCAG+AGG | - | chr1_3:30089041-30089060 | None:intergenic | 25.0% |
| !!! | TTAGAAAAGCAATTTTCAAG+TGG | + | chr1_3:30089227-30089246 | Msa0113920:intron | 25.0% |
| GAAAGTCAAAACCCTAAAAA+TGG | + | chr1_3:30082860-30082879 | Msa0113920:CDS | 30.0% | |
| GAGAGAAGAAAAAATTACTG+CGG | - | chr1_3:30082975-30082994 | None:intergenic | 30.0% | |
| TTTGATGAATTTACGTGCAT+AGG | + | chr1_3:30083036-30083055 | Msa0113920:intron | 30.0% | |
| ATCAACTTATTTGCAGCTTA+CGG | - | chr1_3:30083304-30083323 | None:intergenic | 30.0% | |
| TAAATTTGCATATATGCCCA+AGG | + | chr1_3:30083430-30083449 | Msa0113920:intron | 30.0% | |
| ATGAACAATTGGAAAACCTT+GGG | - | chr1_3:30083449-30083468 | None:intergenic | 30.0% | |
| AATGAACAATTGGAAAACCT+TGG | - | chr1_3:30083450-30083469 | None:intergenic | 30.0% | |
| CAAAAAATGGTAAACTTGCA+GGG | - | chr1_3:30083623-30083642 | None:intergenic | 30.0% | |
| CAAGGACTTAAACCAAAAAA+TGG | - | chr1_3:30083636-30083655 | None:intergenic | 30.0% | |
| CTCAAAAATGATATGCTTGA+AGG | - | chr1_3:30083690-30083709 | None:intergenic | 30.0% | |
| !!! | TCATTTTTGAGTTTTGGTCT+TGG | + | chr1_3:30083699-30083718 | Msa0113920:intron | 30.0% |
| !!! | CATTTTTGAGTTTTGGTCTT+GGG | + | chr1_3:30083700-30083719 | Msa0113920:intron | 30.0% |
| CCGGCAAAATTTATTCATAT+TGG | - | chr1_3:30083816-30083835 | None:intergenic | 30.0% | |
| ! | TCTAGTACTTCTCAGTTTTA+GGG | + | chr1_3:30084087-30084106 | Msa0113920:intron | 30.0% |
| TGAACAGTAGATCAAATAGA+AGG | + | chr1_3:30084228-30084247 | Msa0113920:intron | 30.0% | |
| TAAGCAAGATAAAACTCACA+GGG | - | chr1_3:30084388-30084407 | None:intergenic | 30.0% | |
| TTAAGCAAGATAAAACTCAC+AGG | - | chr1_3:30084389-30084408 | None:intergenic | 30.0% | |
| GACTTCTTCCATTAAAAGAA+TGG | - | chr1_3:30084438-30084457 | None:intergenic | 30.0% | |
| GCTAGAAGAATACTCTTAAA+TGG | + | chr1_3:30084608-30084627 | Msa0113920:intron | 30.0% | |
| !! | ATCACATGTTCGAGTTTTAT+TGG | + | chr1_3:30084863-30084882 | Msa0113920:intron | 30.0% |
| ! | AATTGTTCTAAACCTTGCAA+TGG | + | chr1_3:30084944-30084963 | Msa0113920:intron | 30.0% |
| !! | GTGTTTATTTTTCCATTGCA+AGG | - | chr1_3:30084959-30084978 | None:intergenic | 30.0% |
| TTCTTATTGTAGGGTAAATG+TGG | - | chr1_3:30085088-30085107 | None:intergenic | 30.0% | |
| !!! | GTTGGTTTTTAAAATAGAGG+GGG | - | chr1_3:30085230-30085249 | None:intergenic | 30.0% |
| ! | ACCAAATTGACTCCAAATTT+GGG | - | chr1_3:30085279-30085298 | None:intergenic | 30.0% |
| ! | AACCAAATTGACTCCAAATT+TGG | - | chr1_3:30085280-30085299 | None:intergenic | 30.0% |
| ! | TTAAGGGTATGTTTACAAGT+TGG | + | chr1_3:30085340-30085359 | Msa0113920:intron | 30.0% |
| ! | TAAGGGTATGTTTACAAGTT+GGG | + | chr1_3:30085341-30085360 | Msa0113920:intron | 30.0% |
| AATCTTCATCTCTTCATCAA+TGG | - | chr1_3:30085511-30085530 | None:intergenic | 30.0% | |
| GATGAAGAGATGAAGATTAA+TGG | + | chr1_3:30085513-30085532 | Msa0113920:intron | 30.0% | |
| ! | CTCCCTTTTTATGAAAAAAG+GGG | + | chr1_3:30085765-30085784 | Msa0113920:intron | 30.0% |
| !!! | GTCCCCTTTTTTCATAAAAA+GGG | - | chr1_3:30085770-30085789 | None:intergenic | 30.0% |
| !! | AATTGGCTTAAATGCACTTT+TGG | - | chr1_3:30085792-30085811 | None:intergenic | 30.0% |
| CTTTATGTATGATACTACTC+CGG | - | chr1_3:30085959-30085978 | None:intergenic | 30.0% | |
| ACTACCATAAGATTCAATAC+TGG | + | chr1_3:30086128-30086147 | Msa0113920:intron | 30.0% | |
| ! | AGATCCAGTATTGAATCTTA+TGG | - | chr1_3:30086135-30086154 | None:intergenic | 30.0% |
| AAATAAATAAATCGCTGTGG+GGG | - | chr1_3:30086210-30086229 | None:intergenic | 30.0% | |
| GAAATAAATAAATCGCTGTG+GGG | - | chr1_3:30086211-30086230 | None:intergenic | 30.0% | |
| GATGTAGGAAAAATTGTTCA+AGG | + | chr1_3:30086319-30086338 | Msa0113920:intron | 30.0% | |
| ! | TCTACGGCAATAACTATTTT+TGG | + | chr1_3:30086368-30086387 | Msa0113920:intron | 30.0% |
| CATTTAGTTAAACTGAGGAT+TGG | + | chr1_3:30086394-30086413 | Msa0113920:intron | 30.0% | |
| ! | TCAAAATATGGATTGCTGAT+TGG | + | chr1_3:30086603-30086622 | Msa0113920:CDS | 30.0% |
| AAGCTTAATAACAAAATGGG+TGG | + | chr1_3:30086632-30086651 | Msa0113920:CDS | 30.0% | |
| ! | GGAACCTGATAATTCTTTTA+AGG | - | chr1_3:30086826-30086845 | None:intergenic | 30.0% |
| TCATATGATCCACTGAATAA+TGG | + | chr1_3:30086870-30086889 | Msa0113920:intron | 30.0% | |
| CAATGCAAGCATCAATATAT+AGG | - | chr1_3:30087051-30087070 | None:intergenic | 30.0% | |
| ATAAATGAAGGGCAAAACTT+AGG | + | chr1_3:30087187-30087206 | Msa0113920:intron | 30.0% | |
| AAACTTAGGTGCAATTCTTT+AGG | + | chr1_3:30087201-30087220 | Msa0113920:intron | 30.0% | |
| ! | AAGTTTGTTCTATCCAACAA+AGG | - | chr1_3:30087258-30087277 | None:intergenic | 30.0% |
| !! | TGATGGATTTGATGAAATCA+TGG | + | chr1_3:30087286-30087305 | Msa0113920:intron | 30.0% |
| !! | GTACAATTTTGCTTTTCGTA+TGG | - | chr1_3:30087328-30087347 | None:intergenic | 30.0% |
| TGCAATGTTAGTTGTGAAAA+TGG | + | chr1_3:30087381-30087400 | Msa0113920:intron | 30.0% | |
| ! | AATTTCAAGTGTTCTGTTCT+TGG | + | chr1_3:30087476-30087495 | Msa0113920:intron | 30.0% |
| AATAACATCACAATACTCTC+TGG | - | chr1_3:30087737-30087756 | None:intergenic | 30.0% | |
| GTCACTTACTAATTTATCCT+CGG | + | chr1_3:30087837-30087856 | Msa0113920:intron | 30.0% | |
| TCACTTACTAATTTATCCTC+GGG | + | chr1_3:30087838-30087857 | Msa0113920:intron | 30.0% | |
| CCATGTAAATGGATGATAAA+GGG | - | chr1_3:30087923-30087942 | None:intergenic | 30.0% | |
| TCCATGTAAATGGATGATAA+AGG | - | chr1_3:30087924-30087943 | None:intergenic | 30.0% | |
| TTTATCATCCATTTACATGG+AGG | + | chr1_3:30087923-30087942 | Msa0113920:CDS | 30.0% | |
| GACTGTTCAATCTTTGTATT+TGG | + | chr1_3:30088248-30088267 | Msa0113920:intron | 30.0% | |
| TCTTTGTATTTGGATATCAC+AGG | + | chr1_3:30088258-30088277 | Msa0113920:intron | 30.0% | |
| ATTTAATGTACTCCAAGCAT+GGG | - | chr1_3:30088342-30088361 | None:intergenic | 30.0% | |
| TATTTAATGTACTCCAAGCA+TGG | - | chr1_3:30088343-30088362 | None:intergenic | 30.0% | |
| GTTCAAAATGAGGAAATAGA+AGG | - | chr1_3:30088435-30088454 | None:intergenic | 30.0% | |
| GATTCTTGTATTCAATCGTT+TGG | + | chr1_3:30088527-30088546 | Msa0113920:intron | 30.0% | |
| AAAGATGCATAAACATAACC+AGG | - | chr1_3:30088700-30088719 | None:intergenic | 30.0% | |
| ATCTCTACTATCTATGTACT+AGG | + | chr1_3:30088748-30088767 | Msa0113920:intron | 30.0% | |
| !! | TTTTAATTAAATACCCCCTC+TGG | + | chr1_3:30089022-30089041 | Msa0113920:intron | 30.0% |
| TATTATAATAAGGACCAGAG+GGG | - | chr1_3:30089039-30089058 | None:intergenic | 30.0% | |
| ! | TATCAGAAAAATAGTGGGAA+TGG | + | chr1_3:30089123-30089142 | Msa0113920:intron | 30.0% |
| GACTAAACTGAAATTGTCTT+TGG | + | chr1_3:30089438-30089457 | Msa0113920:intron | 30.0% | |
| TCTATAGTCAGAACATTACT+TGG | - | chr1_3:30089484-30089503 | None:intergenic | 30.0% | |
| !!! | TGCTTCTTCTGCCATTTTTA+GGG | - | chr1_3:30082874-30082893 | None:intergenic | 35.0% |
| TCAAAACCATCGTAACAAAC+AGG | - | chr1_3:30083161-30083180 | None:intergenic | 35.0% | |
| TAAGCTGAAAACAGGTAATG+AGG | - | chr1_3:30083220-30083239 | None:intergenic | 35.0% | |
| ACACTTGTATTGAGTAGTGT+AGG | - | chr1_3:30083384-30083403 | None:intergenic | 35.0% | |
| ! | CTCAACATGTTAGACTTTTC+TGG | - | chr1_3:30083497-30083516 | None:intergenic | 35.0% |
| CAGAAAAGTCTAACATGTTG+AGG | + | chr1_3:30083495-30083514 | Msa0113920:intron | 35.0% | |
| CCAAAAAATGGTAAACTTGC+AGG | - | chr1_3:30083624-30083643 | None:intergenic | 35.0% | |
| !!! | CCTGCAAGTTTACCATTTTT+TGG | + | chr1_3:30083621-30083640 | Msa0113920:intron | 35.0% |
| ! | GACATACAACGTTTTGCTTT+TGG | - | chr1_3:30083861-30083880 | None:intergenic | 35.0% |
| ! | GTCTAGTACTTCTCAGTTTT+AGG | + | chr1_3:30084086-30084105 | Msa0113920:intron | 35.0% |
| !! | AGATCAAATAGAAGGTGTTC+TGG | + | chr1_3:30084236-30084255 | Msa0113920:intron | 35.0% |
| TAATCCTCAAACATTTGCCT+AGG | + | chr1_3:30084284-30084303 | Msa0113920:intron | 35.0% | |
| ! | GTGATCTGCCATTCTTTTAA+TGG | + | chr1_3:30084427-30084446 | Msa0113920:intron | 35.0% |
| GAATAATTCAGAGCTCTTAG+AGG | - | chr1_3:30084503-30084522 | None:intergenic | 35.0% | |
| CCAAATATCCTTCTAACAAG+GGG | - | chr1_3:30084533-30084552 | None:intergenic | 35.0% | |
| GCCAAATATCCTTCTAACAA+GGG | - | chr1_3:30084534-30084553 | None:intergenic | 35.0% | |
| AGCCAAATATCCTTCTAACA+AGG | - | chr1_3:30084535-30084554 | None:intergenic | 35.0% | |
| TAGTCGATCAAATAGAAGAG+TGG | - | chr1_3:30084742-30084761 | None:intergenic | 35.0% | |
| TAAAACTCGAACATGTGATG+TGG | - | chr1_3:30084862-30084881 | None:intergenic | 35.0% | |
| TATTGTTGTGGTGAAGAGTA+GGG | - | chr1_3:30085166-30085185 | None:intergenic | 35.0% | |
| TTATTGTTGTGGTGAAGAGT+AGG | - | chr1_3:30085167-30085186 | None:intergenic | 35.0% | |
| AATTCATGCATTTGTCCCTT+CGG | + | chr1_3:30085185-30085204 | Msa0113920:intron | 35.0% | |
| ! | AAAGTGCATTTAAGACCGAA+GGG | - | chr1_3:30085203-30085222 | None:intergenic | 35.0% |
| ! | AAAAGTGCATTTAAGACCGA+AGG | - | chr1_3:30085204-30085223 | None:intergenic | 35.0% |
| ! | TTCGGTCTTAAATGCACTTT+TGG | + | chr1_3:30085203-30085222 | Msa0113920:intron | 35.0% |
| ! | AATTGACTCCAAATTTGGGT+GGG | - | chr1_3:30085275-30085294 | None:intergenic | 35.0% |
| ! | AAATTGACTCCAAATTTGGG+TGG | - | chr1_3:30085276-30085295 | None:intergenic | 35.0% |
| ! | ACCCAAATTTGGAGTCAATT+TGG | + | chr1_3:30085275-30085294 | Msa0113920:intron | 35.0% |
| GTGGCAATGTCTGAATTTAA+GGG | + | chr1_3:30085324-30085343 | Msa0113920:intron | 35.0% | |
| ! | AAGGGTATGTTTACAAGTTG+GGG | + | chr1_3:30085342-30085361 | Msa0113920:intron | 35.0% |
| ! | AACCAAATTGACTCCACATT+GGG | + | chr1_3:30085669-30085688 | Msa0113920:intron | 35.0% |
| !!! | GGTCCCCTTTTTTCATAAAA+AGG | - | chr1_3:30085771-30085790 | None:intergenic | 35.0% |
| CGGAGTAGTATCATACATAA+AGG | + | chr1_3:30085957-30085976 | Msa0113920:intron | 35.0% | |
| TTGTTCAAGGTGAGATTCTA+TGG | + | chr1_3:30086332-30086351 | Msa0113920:intron | 35.0% | |
| GGTGACATTTAGTTAAACTG+AGG | + | chr1_3:30086389-30086408 | Msa0113920:intron | 35.0% | |
| !!! | CAGCAATCCATATTTTGACT+AGG | - | chr1_3:30086601-30086620 | None:intergenic | 35.0% |
| TCCAAATTTCGATCAAGTAG+CGG | - | chr1_3:30086685-30086704 | None:intergenic | 35.0% | |
| ! | GAGGAAAAGTTGAGTTTTTG+TGG | + | chr1_3:30086729-30086748 | Msa0113920:CDS | 35.0% |
| ATTCCAGATCCATTATTCAG+TGG | - | chr1_3:30086882-30086901 | None:intergenic | 35.0% | |
| !! | CTGGAATGTTGTTTCATGTT+TGG | + | chr1_3:30086895-30086914 | Msa0113920:intron | 35.0% |
| !!! | GTTTGGCTTTTCCAATTTAC+AGG | + | chr1_3:30086912-30086931 | Msa0113920:intron | 35.0% |
| ATTTGGCTACACCTGTAAAT+TGG | - | chr1_3:30086926-30086945 | None:intergenic | 35.0% | |
| TTACAGGTGTAGCCAAATTA+TGG | + | chr1_3:30086928-30086947 | Msa0113920:intron | 35.0% | |
| TACAGGTGTAGCCAAATTAT+GGG | + | chr1_3:30086929-30086948 | Msa0113920:intron | 35.0% | |
| TGGATAGAATATTTGAGCAG+CGG | - | chr1_3:30086978-30086997 | None:intergenic | 35.0% | |
| !!! | TGCTGACATTTTTTTCCTCA+AGG | + | chr1_3:30087009-30087028 | Msa0113920:CDS | 35.0% |
| CATACAGTTAACACATCCAA+AGG | - | chr1_3:30087436-30087455 | None:intergenic | 35.0% | |
| !! | TTGTGCTGTTTATTATGTCC+TGG | + | chr1_3:30087591-30087610 | Msa0113920:intron | 35.0% |
| ATTACGGTGTGATAAGATGA+CGG | - | chr1_3:30087776-30087795 | None:intergenic | 35.0% | |
| GAAAGGAAATCTGGAGATTA+CGG | - | chr1_3:30087792-30087811 | None:intergenic | 35.0% | |
| ! | TGATTTTCAGACATGTTACC+TGG | + | chr1_3:30087861-30087880 | Msa0113920:intron | 35.0% |
| CCCTTTATCATCCATTTACA+TGG | + | chr1_3:30087920-30087939 | Msa0113920:CDS | 35.0% | |
| TGTGGCTATTTATTCCTTTC+TGG | + | chr1_3:30088153-30088172 | Msa0113920:intron | 35.0% | |
| ACAGTAAACTCGTTAAACCA+AGG | - | chr1_3:30088376-30088395 | None:intergenic | 35.0% | |
| TTGGTTTAACGAGTTTACTG+TGG | + | chr1_3:30088375-30088394 | Msa0113920:CDS | 35.0% | |
| GGAACATGAAGTTCAAAATG+AGG | - | chr1_3:30088445-30088464 | None:intergenic | 35.0% | |
| AGTAGTTTCCTAAACCATTC+TGG | + | chr1_3:30088477-30088496 | Msa0113920:intron | 35.0% | |
| TTCATGCTTTCATTCTACGT+AGG | + | chr1_3:30088560-30088579 | Msa0113920:intron | 35.0% | |
| ! | ATTCTAGAGGTAATGTTTCC+TGG | + | chr1_3:30088679-30088698 | Msa0113920:intron | 35.0% |
| ACCCTTAGTATACACTATCA+GGG | + | chr1_3:30088874-30088893 | Msa0113920:intron | 35.0% | |
| GTTAACTGAAAGACGACTAA+GGG | + | chr1_3:30088937-30088956 | Msa0113920:intron | 35.0% | |
| ! | TAGAGATTTTCATGGAAGGT+GGG | + | chr1_3:30088982-30089001 | Msa0113920:intron | 35.0% |
| ATTATAATAAGGACCAGAGG+GGG | - | chr1_3:30089038-30089057 | None:intergenic | 35.0% | |
| !!! | AAGCAATTTTCAAGTGGCAT+TGG | + | chr1_3:30089233-30089252 | Msa0113920:intron | 35.0% |
| !!! | TTTTTGAAGTGTTGCCTTAC+AGG | - | chr1_3:30089304-30089323 | None:intergenic | 35.0% |
| AGAGCTACTAAAAAGAGTCA+AGG | + | chr1_3:30089339-30089358 | Msa0113920:CDS | 35.0% | |
| !! | TGAAATTGTCTTTGGTTTGC+AGG | + | chr1_3:30089446-30089465 | Msa0113920:intron | 35.0% |
| ATGTTCTGACTATAGACTTC+AGG | + | chr1_3:30089488-30089507 | Msa0113920:exon | 35.0% | |
| !!! | CTGCTTCTTCTGCCATTTTT+AGG | - | chr1_3:30082875-30082894 | None:intergenic | 40.0% |
| TGCTGGATTTGGATTTGGAT+TGG | - | chr1_3:30082952-30082971 | None:intergenic | 40.0% | |
| AGAAAAAATTACTGCGGTGC+TGG | - | chr1_3:30082969-30082988 | None:intergenic | 40.0% | |
| ! | TTTGAGATCGTGAGAAGCAT+CGG | + | chr1_3:30083080-30083099 | Msa0113920:CDS | 40.0% |
| !!! | TACGATGGTTTTGAACCTTC+TGG | + | chr1_3:30083167-30083186 | Msa0113920:CDS | 40.0% |
| CAAAACGTTGTATGTCTGCA+GGG | + | chr1_3:30083865-30083884 | Msa0113920:intron | 40.0% | |
| TGATGTTATGCCACATACTG+TGG | - | chr1_3:30084056-30084075 | None:intergenic | 40.0% | |
| ATCACTTTGACACAGAATGG+TGG | - | chr1_3:30084412-30084431 | None:intergenic | 40.0% | |
| CAGATCACTTTGACACAGAA+TGG | - | chr1_3:30084415-30084434 | None:intergenic | 40.0% | |
| CCCCTTGTTAGAAGGATATT+TGG | + | chr1_3:30084530-30084549 | Msa0113920:intron | 40.0% | |
| TGGGTTGTAACTGATCTCAT+AGG | - | chr1_3:30084699-30084718 | None:intergenic | 40.0% | |
| AGTTACAACCCAAACACTAG+CGG | + | chr1_3:30084707-30084726 | Msa0113920:intron | 40.0% | |
| CAAAACTGGGACCAAAATGT+TGG | - | chr1_3:30085248-30085267 | None:intergenic | 40.0% | |
| !! | CAACATTTTGGTCCCAGTTT+TGG | + | chr1_3:30085246-30085265 | Msa0113920:intron | 40.0% |
| ! | ATTGACTCCAAATTTGGGTG+GGG | - | chr1_3:30085274-30085293 | None:intergenic | 40.0% |
| ! | TGGAGTCAATTTGGTTGATG+TGG | + | chr1_3:30085284-30085303 | Msa0113920:intron | 40.0% |
| AGACATTGCCACGTCATAAA+TGG | - | chr1_3:30085316-30085335 | None:intergenic | 40.0% | |
| CGTGGCAATGTCTGAATTTA+AGG | + | chr1_3:30085323-30085342 | Msa0113920:intron | 40.0% | |
| ATGACATGGCAACACCTAAA+TGG | - | chr1_3:30085630-30085649 | None:intergenic | 40.0% | |
| ! | TGGAGTCAATTTGGTTGATG+TGG | - | chr1_3:30085284-30085303 | None:intergenic | 40.0% |
| ! | CAACCAAATTGACTCCACAT+TGG | + | chr1_3:30085668-30085687 | Msa0113920:intron | 40.0% |
| ! | ACCAAATTGACTCCACATTG+GGG | + | chr1_3:30085670-30085689 | Msa0113920:intron | 40.0% |
| AAAACTGGGGACCAAAATGT+TGG | + | chr1_3:30085719-30085738 | Msa0113920:intron | 40.0% | |
| !! | TTTCAGGCTTTCAGGTTTCT+GGG | - | chr1_3:30086236-30086255 | None:intergenic | 40.0% |
| !! | TGTCAAGTATGGCTTGTTTC+AGG | - | chr1_3:30086252-30086271 | None:intergenic | 40.0% |
| CACACATCTGATGTCAAGTA+TGG | - | chr1_3:30086263-30086282 | None:intergenic | 40.0% | |
| !! | AGTTGTTGAAGGTGTTGTAC+TGG | + | chr1_3:30086481-30086500 | Msa0113920:intron | 40.0% |
| !!! | TATTTTGACTAGGCAACCAG+CGG | - | chr1_3:30086591-30086610 | None:intergenic | 40.0% |
| CTGGTTGCCTAGTCAAAATA+TGG | + | chr1_3:30086591-30086610 | Msa0113920:CDS | 40.0% | |
| ATCGAAATTTGGAAAGCCGT+TGG | + | chr1_3:30086692-30086711 | Msa0113920:CDS | 40.0% | |
| TCGAAATTTGGAAAGCCGTT+GGG | + | chr1_3:30086693-30086712 | Msa0113920:CDS | 40.0% | |
| TGAGCTATATCCAACACAAG+AGG | - | chr1_3:30086794-30086813 | None:intergenic | 40.0% | |
| !! | GATCCACTGAATAATGGATC+TGG | + | chr1_3:30086876-30086895 | Msa0113920:intron | 40.0% |
| AAAGAGTGAACTTCACCTTG+AGG | - | chr1_3:30087027-30087046 | None:intergenic | 40.0% | |
| TCTCCTTATTAGGCTTGTGA+TGG | + | chr1_3:30087137-30087156 | Msa0113920:intron | 40.0% | |
| CATCCATCACAAGCCTAATA+AGG | - | chr1_3:30087143-30087162 | None:intergenic | 40.0% | |
| TGATAGATGTTCACAGCCTT+TGG | + | chr1_3:30087417-30087436 | Msa0113920:intron | 40.0% | |
| TTCTCTGATCCATTCCCAAT+TGG | - | chr1_3:30087699-30087718 | None:intergenic | 40.0% | |
| TTACGGTGTGATAAGATGAC+GGG | - | chr1_3:30087775-30087794 | None:intergenic | 40.0% | |
| TCCTTTCAGCTAGCGTATAT+TGG | + | chr1_3:30087805-30087824 | Msa0113920:intron | 40.0% | |
| TCCAATATACGCTAGCTGAA+AGG | - | chr1_3:30087809-30087828 | None:intergenic | 40.0% | |
| ATGTTACCTGGTCTACAACA+AGG | + | chr1_3:30087873-30087892 | Msa0113920:CDS | 40.0% | |
| TGTTACCTGGTCTACAACAA+GGG | + | chr1_3:30087874-30087893 | Msa0113920:CDS | 40.0% | |
| CTCTTCATCCTCCATGTAAA+TGG | - | chr1_3:30087934-30087953 | None:intergenic | 40.0% | |
| CATTTACATGGAGGATGAAG+AGG | + | chr1_3:30087932-30087951 | Msa0113920:CDS | 40.0% | |
| TGAAGAGGTAAGCTGCTAAA+AGG | + | chr1_3:30087947-30087966 | Msa0113920:intron | 40.0% | |
| GAAGAGGTAAGCTGCTAAAA+GGG | + | chr1_3:30087948-30087967 | Msa0113920:intron | 40.0% | |
| TTTCCTTCCACAATCTTTGG+CGG | - | chr1_3:30088319-30088338 | None:intergenic | 40.0% | |
| GTTTCCTAAACCATTCTGGT+TGG | + | chr1_3:30088481-30088500 | Msa0113920:intron | 40.0% | |
| ! | TTGATTGCCGACTATGAAAG+CGG | + | chr1_3:30088604-30088623 | Msa0113920:CDS | 40.0% |
| TAACTCTCCGCTTTCATAGT+CGG | - | chr1_3:30088614-30088633 | None:intergenic | 40.0% | |
| TTCAATGACTTCGACAAAGC+CGG | - | chr1_3:30088655-30088674 | None:intergenic | 40.0% | |
| GACCCTTAGTATACACTATC+AGG | + | chr1_3:30088873-30088892 | Msa0113920:intron | 40.0% | |
| ! | CCCCTGATAGTGTATACTAA+GGG | - | chr1_3:30088878-30088897 | None:intergenic | 40.0% |
| CCCTTAGTATACACTATCAG+GGG | + | chr1_3:30088875-30088894 | Msa0113920:intron | 40.0% | |
| ! | TCCCCTGATAGTGTATACTA+AGG | - | chr1_3:30088879-30088898 | None:intergenic | 40.0% |
| GGTTAACTGAAAGACGACTA+AGG | + | chr1_3:30088936-30088955 | Msa0113920:intron | 40.0% | |
| !! | GTTGGTTTGGTTCAAACTGA+GGG | + | chr1_3:30088959-30088978 | Msa0113920:intron | 40.0% |
| ! | ACTGAGGGTAGAGATTTTCA+TGG | + | chr1_3:30088974-30088993 | Msa0113920:intron | 40.0% |
| ! | AGGGTAGAGATTTTCATGGA+AGG | + | chr1_3:30088978-30088997 | Msa0113920:intron | 40.0% |
| ! | GTAGAGATTTTCATGGAAGG+TGG | + | chr1_3:30088981-30089000 | Msa0113920:intron | 40.0% |
| ! | AGAGATTTTCATGGAAGGTG+GGG | + | chr1_3:30088983-30089002 | Msa0113920:intron | 40.0% |
| AAATACTTAAATGCCCCCAG+CGG | - | chr1_3:30089178-30089197 | None:intergenic | 40.0% | |
| TTGGAAATATGCAGCCTGTA+AGG | + | chr1_3:30089287-30089306 | Msa0113920:intron | 40.0% | |
| ! | CAATGATTCCAGTGCTACTG+CGG | - | chr1_3:30082907-30082926 | None:intergenic | 45.0% |
| GGTAGATGATGATTCAGCGA+CGG | - | chr1_3:30082931-30082950 | None:intergenic | 45.0% | |
| ! | AATTACTGCGGTGCTGGATT+TGG | - | chr1_3:30082963-30082982 | None:intergenic | 45.0% |
| TTATCCAATCAGGCCCATAG+TGG | + | chr1_3:30083323-30083342 | Msa0113920:intron | 45.0% | |
| ! | TTTTCCACTATGGGCCTGAT+TGG | - | chr1_3:30083330-30083349 | None:intergenic | 45.0% |
| GCAAAACGTTGTATGTCTGC+AGG | + | chr1_3:30083864-30083883 | Msa0113920:intron | 45.0% | |
| !! | TCAAGAGTGTCCACAGTATG+TGG | + | chr1_3:30084043-30084062 | Msa0113920:intron | 45.0% |
| TTTGGTGAATGCGCTTGAAG+AGG | + | chr1_3:30084151-30084170 | Msa0113920:intron | 45.0% | |
| GCAACCTAGGCAAATGTTTG+AGG | - | chr1_3:30084291-30084310 | None:intergenic | 45.0% | |
| AAACTCACAGGGTGATTGCT+CGG | - | chr1_3:30084377-30084396 | None:intergenic | 45.0% | |
| CCTTCTAACAAGGGGATGAT+GGG | - | chr1_3:30084525-30084544 | None:intergenic | 45.0% | |
| TCCTTCTAACAAGGGGATGA+TGG | - | chr1_3:30084526-30084545 | None:intergenic | 45.0% | |
| GCAGCTTGAACAGAAGTTTG+AGG | + | chr1_3:30084663-30084682 | Msa0113920:intron | 45.0% | |
| AAATAGAAGAGTGGCTGCAG+AGG | - | chr1_3:30084733-30084752 | None:intergenic | 45.0% | |
| GAGATTTCGCAAAGCACACA+TGG | + | chr1_3:30084770-30084789 | Msa0113920:intron | 45.0% | |
| GTTGAGACGCCACAATTAGT+TGG | - | chr1_3:30085115-30085134 | None:intergenic | 45.0% | |
| TTGACTCCAAATTTGGGTGG+GGG | - | chr1_3:30085273-30085292 | None:intergenic | 45.0% | |
| !! | GGCATTGACCATTTATGACG+TGG | + | chr1_3:30085305-30085324 | Msa0113920:intron | 45.0% |
| ! | AGGTGTTGCCATGTCATTAG+TGG | + | chr1_3:30085633-30085652 | Msa0113920:intron | 45.0% |
| ! | GGTGTTGCCATGTCATTAGT+GGG | + | chr1_3:30085634-30085653 | Msa0113920:intron | 45.0% |
| ! | AAATTGACTCCACATTGGGG+CGG | + | chr1_3:30085673-30085692 | Msa0113920:intron | 45.0% |
| !! | GTTTCAGGCTTTCAGGTTTC+TGG | - | chr1_3:30086237-30086256 | None:intergenic | 45.0% |
| !! | ATGGCTTGTTTCAGGCTTTC+AGG | - | chr1_3:30086244-30086263 | None:intergenic | 45.0% |
| GCCGCTACTTGATCGAAATT+TGG | + | chr1_3:30086681-30086700 | Msa0113920:CDS | 45.0% | |
| AATTTGGAAAGCCGTTGGGA+TGG | + | chr1_3:30086697-30086716 | Msa0113920:CDS | 45.0% | |
| GGTGTAGCCAAATTATGGGA+CGG | + | chr1_3:30086933-30086952 | Msa0113920:intron | 45.0% | |
| GTTCACTCCGTCCCATAATT+TGG | - | chr1_3:30086943-30086962 | None:intergenic | 45.0% | |
| TGACAACTACAGATGAAGCC+AGG | - | chr1_3:30087612-30087631 | None:intergenic | 45.0% | |
| CATTCCCAATTGGCAGATGT+CGG | - | chr1_3:30087689-30087708 | None:intergenic | 45.0% | |
| ACGCTAGCTGAAAGGAAATC+TGG | - | chr1_3:30087801-30087820 | None:intergenic | 45.0% | |
| ACATGTCTGAAAATCACCCG+AGG | - | chr1_3:30087857-30087876 | None:intergenic | 45.0% | |
| ATATTGCCCGCCAAAGATTG+TGG | + | chr1_3:30088309-30088328 | Msa0113920:CDS | 45.0% | |
| TTCCTTCCACAATCTTTGGC+GGG | - | chr1_3:30088318-30088337 | None:intergenic | 45.0% | |
| GGGTTTCCTTCCACAATCTT+TGG | - | chr1_3:30088322-30088341 | None:intergenic | 45.0% | |
| GTGGAGCGTAATGCAGATAA+TGG | + | chr1_3:30088394-30088413 | Msa0113920:CDS | 45.0% | |
| ! | GAGCGTAATGCAGATAATGG+TGG | + | chr1_3:30088397-30088416 | Msa0113920:CDS | 45.0% |
| GAAGCCAACCAGAATGGTTT+AGG | - | chr1_3:30088488-30088507 | None:intergenic | 45.0% | |
| ACATCCAGCTGACCTTAAAC+CGG | + | chr1_3:30088633-30088652 | Msa0113920:CDS | 45.0% | |
| ! | ACTTCGACAAAGCCGGTTTA+AGG | - | chr1_3:30088648-30088667 | None:intergenic | 45.0% |
| ACTGAAAGACGACTAAGGGT+TGG | + | chr1_3:30088941-30088960 | Msa0113920:intron | 45.0% | |
| !! | AAGACGACTAAGGGTTGGTT+TGG | + | chr1_3:30088946-30088965 | Msa0113920:intron | 45.0% |
| !! | GGTTGGTTTGGTTCAAACTG+AGG | + | chr1_3:30088958-30088977 | Msa0113920:intron | 45.0% |
| TAGTTATAAGTTAGCGCCGC+TGG | + | chr1_3:30089159-30089178 | Msa0113920:intron | 45.0% | |
| AGTTATAAGTTAGCGCCGCT+GGG | + | chr1_3:30089160-30089179 | Msa0113920:intron | 45.0% | |
| !! | TCTTTGGTTTGCAGGCTTAC+AGG | + | chr1_3:30089454-30089473 | Msa0113920:intron | 45.0% |
| !! | CTTTGGTTTGCAGGCTTACA+GGG | + | chr1_3:30089455-30089474 | Msa0113920:intron | 45.0% |
| ATTGAAATTCCGACCGACGC+TGG | + | chr1_3:30082822-30082841 | Msa0113920:CDS | 50.0% | |
| TACTATCGCAATGCCAGCGT+CGG | - | chr1_3:30082838-30082857 | None:intergenic | 50.0% | |
| ! | TGCGGTGCTGGATTTGGATT+TGG | - | chr1_3:30082957-30082976 | None:intergenic | 50.0% |
| CGTGCATAGGTTGTTGAGTG+CGG | + | chr1_3:30083049-30083068 | Msa0113920:intron | 50.0% | |
| CCATCGTAACAAACAGGCTG+AGG | - | chr1_3:30083155-30083174 | None:intergenic | 50.0% | |
| ! | CCTCAGCCTGTTTGTTACGA+TGG | + | chr1_3:30083152-30083171 | Msa0113920:CDS | 50.0% |
| GCAATGTGCATTCGTCCAGA+AGG | - | chr1_3:30083185-30083204 | None:intergenic | 50.0% | |
| TGGACGAATGCACATTGCTC+AGG | + | chr1_3:30083187-30083206 | Msa0113920:CDS | 50.0% | |
| CCCATCATCCCCTTGTTAGA+AGG | + | chr1_3:30084522-30084541 | Msa0113920:intron | 50.0% | |
| TTTGGTCCCCCACCCAAATT+TGG | + | chr1_3:30085264-30085283 | Msa0113920:intron | 50.0% | |
| GGCATTGCCCACTAATGACA+TGG | - | chr1_3:30085644-30085663 | None:intergenic | 50.0% | |
| GCCCCAATGTGGAGTCAATT+TGG | - | chr1_3:30085674-30085693 | None:intergenic | 50.0% | |
| ! | AATTGACTCCACATTGGGGC+GGG | + | chr1_3:30085674-30085693 | Msa0113920:intron | 50.0% |
| ! | CCTGCAACAGAATTTTGCGC+AGG | - | chr1_3:30086168-30086187 | None:intergenic | 50.0% |
| CCTGCGCAAAATTCTGTTGC+AGG | + | chr1_3:30086165-30086184 | Msa0113920:intron | 50.0% | |
| GTGAACAAGCTAACATCCGC+TGG | + | chr1_3:30086572-30086591 | Msa0113920:CDS | 50.0% | |
| TCCTTCCAGATCCATCCCAA+CGG | - | chr1_3:30086711-30086730 | None:intergenic | 50.0% | |
| ATGTCAGCACACTGCATGCA+TGG | - | chr1_3:30086998-30087017 | None:intergenic | 50.0% | |
| ATAGGCCGACATCTGCCAAT+TGG | + | chr1_3:30087681-30087700 | Msa0113920:intron | 50.0% | |
| TAGGCCGACATCTGCCAATT+GGG | + | chr1_3:30087682-30087701 | Msa0113920:intron | 50.0% | |
| CGACATCTGCCAATTGGGAA+TGG | + | chr1_3:30087687-30087706 | Msa0113920:CDS | 50.0% | |
| ! | TCTTGCCCTTGTTGTAGACC+AGG | - | chr1_3:30087882-30087901 | None:intergenic | 50.0% |
| TGTGGAAGGAAACCCATGCT+TGG | + | chr1_3:30088327-30088346 | Msa0113920:CDS | 50.0% | |
| CAGACTGAAGCCAACCAGAA+TGG | - | chr1_3:30088494-30088513 | None:intergenic | 50.0% | |
| ! | AAAGCCGGTTTAAGGTCAGC+TGG | - | chr1_3:30088640-30088659 | None:intergenic | 50.0% |
| ATGGAAGGTGGGGTAAGAGA+GGG | + | chr1_3:30088993-30089012 | Msa0113920:intron | 50.0% | |
| GTTATAAGTTAGCGCCGCTG+GGG | + | chr1_3:30089161-30089180 | Msa0113920:intron | 50.0% | |
| TTATAAGTTAGCGCCGCTGG+GGG | + | chr1_3:30089162-30089181 | Msa0113920:intron | 50.0% | |
| ! | TGATTCCAGTGCTACTGCGG+CGG | - | chr1_3:30082904-30082923 | None:intergenic | 55.0% |
| !! | GCTGAGGCTTTTTAGCGAGG+AGG | - | chr1_3:30083139-30083158 | None:intergenic | 55.0% |
| !! | CAGGCTGAGGCTTTTTAGCG+AGG | - | chr1_3:30083142-30083161 | None:intergenic | 55.0% |
| TGAGCTCTTGCTCGAACACG+TGG | + | chr1_3:30084121-30084140 | Msa0113920:intron | 55.0% | |
| TCTTGCTCGAACACGTGGTG+CGG | + | chr1_3:30084126-30084145 | Msa0113920:intron | 55.0% | |
| ! | CGAACACGTGGTGCGGTTTT+TGG | + | chr1_3:30084133-30084152 | Msa0113920:intron | 55.0% |
| TGCAGAGGCCGCTAGTGTTT+GGG | - | chr1_3:30084718-30084737 | None:intergenic | 55.0% | |
| TTGGGTGGGGGACCAAAACT+GGG | - | chr1_3:30085261-30085280 | None:intergenic | 55.0% | |
| TTTGGGTGGGGGACCAAAAC+TGG | - | chr1_3:30085262-30085281 | None:intergenic | 55.0% | |
| ! | ATTGACTCCACATTGGGGCG+GGG | + | chr1_3:30085675-30085694 | Msa0113920:intron | 55.0% |
| GAAAGCCGTTGGGATGGATC+TGG | + | chr1_3:30086703-30086722 | Msa0113920:CDS | 55.0% | |
| GTTGGGATGGATCTGGAAGG+AGG | + | chr1_3:30086710-30086729 | Msa0113920:CDS | 55.0% | |
| TGCCCGCCAAAGATTGTGGA+AGG | + | chr1_3:30088313-30088332 | Msa0113920:CDS | 55.0% | |
| CACTATCAGGGGAGAGCTAG+AGG | + | chr1_3:30088886-30088905 | Msa0113920:intron | 55.0% | |
| CATGGAAGGTGGGGTAAGAG+AGG | + | chr1_3:30088992-30089011 | Msa0113920:intron | 55.0% | |
| TGGAAGGTGGGGTAAGAGAG+GGG | + | chr1_3:30088994-30089013 | Msa0113920:intron | 55.0% | |
| !! | ATCGCAATGCCAGCGTCGGT+CGG | - | chr1_3:30082834-30082853 | None:intergenic | 60.0% |
| CTGCAGAGGCCGCTAGTGTT+TGG | - | chr1_3:30084719-30084738 | None:intergenic | 60.0% | |
| TTGACTCCACATTGGGGCGG+GGG | + | chr1_3:30085676-30085695 | Msa0113920:intron | 60.0% | |
| GCCGTTGGGATGGATCTGGA+AGG | + | chr1_3:30086707-30086726 | Msa0113920:CDS | 60.0% | |
| AAGGTGGGGTAAGAGAGGGG+AGG | + | chr1_3:30088997-30089016 | Msa0113920:intron | 60.0% | |
| ! | TTCCAGTGCTACTGCGGCGG+CGG | - | chr1_3:30082901-30082920 | None:intergenic | 65.0% |
| TTTGGTCCCCCGCCCCAATG+TGG | - | chr1_3:30085685-30085704 | None:intergenic | 65.0% | |
| AGCCGCCGCCGCAGTAGCAC+TGG | + | chr1_3:30082896-30082915 | Msa0113920:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 30082786 | 30089576 | 30082786 | ID=Msa0113920;Name=Msa0113920 |
| chr1_3 | mRNA | 30082786 | 30089576 | 30082786 | ID=Msa0113920-mRNA-1;Parent=Msa0113920;Name=Msa0113920-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|1|0.9|1|1|1|10|88|416 |
| chr1_3 | exon | 30082786 | 30082976 | 30082786 | ID=Msa0113920-mRNA-1:exon:9990;Parent=Msa0113920-mRNA-1 |
| chr1_3 | exon | 30083058 | 30083208 | 30083058 | ID=Msa0113920-mRNA-1:exon:9991;Parent=Msa0113920-mRNA-1 |
| chr1_3 | exon | 30086551 | 30086840 | 30086551 | ID=Msa0113920-mRNA-1:exon:9992;Parent=Msa0113920-mRNA-1 |
| chr1_3 | exon | 30086934 | 30087030 | 30086934 | ID=Msa0113920-mRNA-1:exon:9993;Parent=Msa0113920-mRNA-1 |
| chr1_3 | exon | 30087685 | 30087790 | 30087685 | ID=Msa0113920-mRNA-1:exon:9994;Parent=Msa0113920-mRNA-1 |
| chr1_3 | exon | 30087871 | 30087953 | 30087871 | ID=Msa0113920-mRNA-1:exon:9995;Parent=Msa0113920-mRNA-1 |
| chr1_3 | exon | 30088280 | 30088425 | 30088280 | ID=Msa0113920-mRNA-1:exon:9996;Parent=Msa0113920-mRNA-1 |
| chr1_3 | exon | 30088582 | 30088687 | 30088582 | ID=Msa0113920-mRNA-1:exon:9997;Parent=Msa0113920-mRNA-1 |
| chr1_3 | exon | 30089301 | 30089360 | 30089301 | ID=Msa0113920-mRNA-1:exon:9998;Parent=Msa0113920-mRNA-1 |
| chr1_3 | exon | 30089468 | 30089576 | 30089468 | ID=Msa0113920-mRNA-1:exon:9999;Parent=Msa0113920-mRNA-1 |
| chr1_3 | CDS | 30082786 | 30082976 | 30082786 | ID=Msa0113920-mRNA-1:cds;Parent=Msa0113920-mRNA-1 |
| chr1_3 | CDS | 30083058 | 30083208 | 30083058 | ID=Msa0113920-mRNA-1:cds;Parent=Msa0113920-mRNA-1 |
| chr1_3 | CDS | 30086551 | 30086840 | 30086551 | ID=Msa0113920-mRNA-1:cds;Parent=Msa0113920-mRNA-1 |
| chr1_3 | CDS | 30086934 | 30087030 | 30086934 | ID=Msa0113920-mRNA-1:cds;Parent=Msa0113920-mRNA-1 |
| chr1_3 | CDS | 30087685 | 30087790 | 30087685 | ID=Msa0113920-mRNA-1:cds;Parent=Msa0113920-mRNA-1 |
| chr1_3 | CDS | 30087871 | 30087953 | 30087871 | ID=Msa0113920-mRNA-1:cds;Parent=Msa0113920-mRNA-1 |
| chr1_3 | CDS | 30088280 | 30088425 | 30088280 | ID=Msa0113920-mRNA-1:cds;Parent=Msa0113920-mRNA-1 |
| chr1_3 | CDS | 30088582 | 30088687 | 30088582 | ID=Msa0113920-mRNA-1:cds;Parent=Msa0113920-mRNA-1 |
| chr1_3 | CDS | 30089301 | 30089360 | 30089301 | ID=Msa0113920-mRNA-1:cds;Parent=Msa0113920-mRNA-1 |
| chr1_3 | CDS | 30089468 | 30089488 | 30089468 | ID=Msa0113920-mRNA-1:cds;Parent=Msa0113920-mRNA-1 |
| chr1_3 | three_prime_UTR | 30089489 | 30089576 | 30089489 | ID=Msa0113920-mRNA-1:three_prime_utr;Parent=Msa0113920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
