Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456190 | AET03560.1 | 79.167 | 48 | 10 | 0 | 5 | 52 | 8 | 55 | 6.67e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456190 | G7L8M6 | 79.167 | 48 | 10 | 0 | 5 | 52 | 8 | 55 | 3.19e-11 | 64.3 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002680 | Msa1456190 | 0.809245 | 2.081905e-50 | -8.615850e-47 |
| Msa0002710 | Msa1456190 | 0.820585 | 6.345203e-53 | -8.615850e-47 |
| Msa0006510 | Msa1456190 | 0.801631 | 8.221425e-49 | -8.615850e-47 |
| Msa0056450 | Msa1456190 | 0.824412 | 8.186849e-54 | -8.615850e-47 |
| Msa1358240 | Msa1456190 | 0.831603 | 1.519733e-55 | -8.615850e-47 |
| Msa1454530 | Msa1456190 | 0.803847 | 2.866834e-49 | -8.615850e-47 |
| Msa0656000 | Msa1456190 | 0.810173 | 1.315138e-50 | -8.615850e-47 |
| Msa0661320 | Msa1456190 | 0.813779 | 2.153093e-51 | -8.615850e-47 |
| Msa0756380 | Msa1456190 | 0.801057 | 1.077393e-48 | -8.615850e-47 |
| Msa0809140 | Msa1456190 | 0.805361 | 1.385458e-49 | -8.615850e-47 |
| Msa0138750 | Msa1456190 | 0.809026 | 2.319048e-50 | -8.615850e-47 |
| Msa0168870 | Msa1456190 | 0.822688 | 2.072483e-53 | -8.615850e-47 |
| Msa0205010 | Msa1456190 | 0.804708 | 1.897012e-49 | -8.615850e-47 |
| Msa0225640 | Msa1456190 | 0.809381 | 1.946507e-50 | -8.615850e-47 |
| Msa1245440 | Msa1456190 | 0.814612 | 1.410068e-51 | -8.615850e-47 |
| Msa1284900 | Msa1456190 | 0.814357 | 1.605213e-51 | -8.615850e-47 |
| Msa0389910 | Msa1456190 | 0.807597 | 4.677710e-50 | -8.615850e-47 |
| Msa1034500 | Msa1456190 | 0.823030 | 1.724396e-53 | -8.615850e-47 |
| Msa0339910 | Msa1456190 | 0.810503 | 1.115995e-50 | -8.615850e-47 |
| Msa0342010 | Msa1456190 | 0.803968 | 2.705976e-49 | -8.615850e-47 |
| Msa1111380 | Msa1456190 | 0.817230 | 3.673689e-52 | -8.615850e-47 |
| Msa0868160 | Msa1456190 | 0.818686 | 1.722092e-52 | -8.615850e-47 |
| Msa0936390 | Msa1456190 | 0.809556 | 1.785093e-50 | -8.615850e-47 |
| Msa0959540 | Msa1456190 | 0.857827 | 1.251756e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 64 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGATTTAGGTTTATTTCAT+TGG | 0.286261 | tig0036999:-942 | Msa1456190:intron |
| TCGATGGAGCTTGAGCTTAC+TGG | 0.328079 | tig0036999:-908 | Msa1456190:three_prime_UTR |
| CGGCGAGGGTGGAGGATTGC+TGG | 0.330889 | tig0036999:-2231 | Msa1456190:three_prime_UTR |
| AAGGGCGATGAGAGCGATTC+CGG | 0.356983 | tig0036999:-2329 | Msa1456190:exon |
| TCCGTTGCGGCTGATGAATC+TGG | 0.361892 | tig0036999:+2054 | Msa1456190:intergenic |
| GCCTTCTAACTTGCTTCAGC+TGG | 0.368863 | tig0036999:-2572 | Msa1456190:CDS |
| GTAATGCAGCAGCGGTGTTT+TGG | 0.370709 | tig0036999:-182 | Msa1456190:three_prime_UTR |
| CGTCAACATTGAACATATTC+CGG | 0.385663 | tig0036999:+2023 | Msa1456190:intergenic |
| AGGTTGTTGATGTTGTGTTT+TGG | 0.387539 | tig0036999:-2447 | Msa1456190:CDS |
| GCCAGCTGAAGCAAGTTAGA+AGG | 0.389419 | tig0036999:+2571 | Msa1456190:intergenic |
| AACTATTCAGAGTTGGTTCA+AGG | 0.418221 | tig0036999:-284 | Msa1456190:three_prime_UTR |
| TTAAATACTTAAAGAAGAAC+AGG | 0.448007 | tig0036999:+827 | Msa1456190:intergenic |
| AGAAAGCGGCGAGGGAGAGA+AGG | 0.460997 | tig0036999:+2533 | Msa1456190:intergenic |
| CGAGGTCGCAACAGTAGATT+CGG | 0.464707 | tig0036999:+1984 | Msa1456190:intergenic |
| CAGTAGATTCGGTTGTTCTC+CGG | 0.469266 | tig0036999:+1995 | Msa1456190:intergenic |
| TGCGCTAGCAGCGGCGAGGG+TGG | 0.470828 | tig0036999:-2242 | Msa1456190:three_prime_UTR |
| GCATGCGCTAGCAGCGGCGA+GGG | 0.496549 | tig0036999:-2245 | Msa1456190:three_prime_UTR |
| GGTGAGGACGTTGGCGATGA+TGG | 0.500370 | tig0036999:-2381 | Msa1456190:CDS |
| AGAAGGCGGCGAGGTAGAGA+AGG | 0.510635 | tig0036999:+2603 | Msa1456190:intergenic |
| GAGATTAACGGACGCGGTGA+AGG | 0.511865 | tig0036999:-2348 | Msa1456190:CDS |
| TGAGGCAGAGAGAACAAATA+CGG | 0.514603 | tig0036999:-2415 | Msa1456190:CDS |
| CATAATTTCGAGCGAAGTCG+TGG | 0.516262 | tig0036999:-251 | Msa1456190:three_prime_UTR |
| GCTAGCAGCGGCGAGGGTGG+AGG | 0.519133 | tig0036999:-2239 | Msa1456190:three_prime_UTR |
| AGTATTTAATTCTGATCACT+TGG | 0.524314 | tig0036999:-813 | Msa1456190:intron |
| GTTCAATGTTGACGAGAGAC+CGG | 0.524464 | tig0036999:-2014 | Msa1456190:three_prime_UTR |
| GAAAACAGAGAAAGCGGCGA+GGG | 0.530036 | tig0036999:+2525 | Msa1456190:intergenic |
| GATGAGAGCGATTCCGGTGA+AGG | 0.544387 | tig0036999:-2323 | Msa1456190:exon |
| GCGAGGTAGAGAAGGAGAGA+AGG | 0.547269 | tig0036999:+2611 | Msa1456190:intergenic |
| GCCGACGCAGACACCTTCAC+CGG | 0.547300 | tig0036999:+2310 | Msa1456190:intergenic |
| CGACCTCGCTAACGAACCCT+AGG | 0.548734 | tig0036999:-1969 | Msa1456190:intron |
| TGTGCTTAACTATTCAGAGT+TGG | 0.553654 | tig0036999:-291 | Msa1456190:three_prime_UTR |
| ACTGGATATCAATATGTTGG+TGG | 0.553704 | tig0036999:-890 | Msa1456190:three_prime_UTR |
| ATTGGAGAAGATGCCATCGA+TGG | 0.555013 | tig0036999:-924 | Msa1456190:three_prime_UTR |
| TCCGGTGGTTTCATCCGTTG+CGG | 0.563463 | tig0036999:+2041 | Msa1456190:intergenic |
| AAACCTAGGGTTCGTTAGCG+AGG | 0.564869 | tig0036999:+1966 | Msa1456190:intergenic |
| TCCAGATTCATCAGCCGCAA+CGG | 0.566551 | tig0036999:-2055 | Msa1456190:three_prime_UTR |
| TGCATGCGCTAGCAGCGGCG+AGG | 0.570502 | tig0036999:-2246 | Msa1456190:three_prime_UTR |
| ATATCAATATGTTGGTGGGC+CGG | 0.570699 | tig0036999:-885 | Msa1456190:three_prime_UTR |
| TCCGGTGAAGGTGTCTGCGT+CGG | 0.576477 | tig0036999:-2311 | Msa1456190:three_prime_UTR |
| TGGAGGATTGCTGGAGACAA+TGG | 0.576512 | tig0036999:-2222 | Msa1456190:three_prime_UTR |
| AGATTAACGGACGCGGTGAA+GGG | 0.586989 | tig0036999:-2347 | Msa1456190:CDS |
| AGGTAGAGAAGGAGAGAAGG+CGG | 0.590456 | tig0036999:+2614 | Msa1456190:intergenic |
| CTCTTTGCATGCGCTAGCAG+CGG | 0.592887 | tig0036999:-2251 | Msa1456190:three_prime_UTR |
| GGTGGTGACAATGAGATTAA+CGG | 0.594491 | tig0036999:-2360 | Msa1456190:CDS |
| CTTACTGGATATCAATATGT+TGG | 0.596237 | tig0036999:-893 | Msa1456190:three_prime_UTR |
| CTGGATATCAATATGTTGGT+GGG | 0.599065 | tig0036999:-889 | Msa1456190:three_prime_UTR |
| ACAAATACGGAAGCGAGAGT+AGG | 0.607786 | tig0036999:-2402 | Msa1456190:CDS |
| CGAAAACAGAGAAAGCGGCG+AGG | 0.614270 | tig0036999:+2524 | Msa1456190:intergenic |
| GTAAGCTCAAGCTCCATCGA+TGG | 0.619771 | tig0036999:+911 | Msa1456190:intergenic |
| TATACAAACTCAATACATGC+CGG | 0.623551 | tig0036999:+866 | Msa1456190:intergenic |
| GCCGCAACGGATGAAACCAC+CGG | 0.626069 | tig0036999:-2042 | Msa1456190:three_prime_UTR |
| TGGCACAACCGCAAAAGTGA+AGG | 0.628005 | tig0036999:-2202 | Msa1456190:intron |
| TACGGAAGCGAGAGTAGGTG+AGG | 0.632111 | tig0036999:-2397 | Msa1456190:CDS |
| AGTTCGTGAGATTGATATCG+AGG | 0.645332 | tig0036999:-575 | Msa1456190:three_prime_UTR |
| TCACAGATGTCAGAATGATG+CGG | 0.646855 | tig0036999:+2501 | Msa1456190:intergenic |
| TTAGAAGGCGAAAACAGAGA+AGG | 0.649900 | tig0036999:+2586 | Msa1456190:intergenic |
| CGAAAACAGAGAAGGCGGCG+AGG | 0.652279 | tig0036999:+2594 | Msa1456190:intergenic |
| CAACATTGAACATATTCCGG+TGG | 0.660528 | tig0036999:+2026 | Msa1456190:intergenic |
| TGCGGCGAAAACAGAGAAAG+CGG | 0.671636 | tig0036999:+2519 | Msa1456190:intergenic |
| GAGGACGTTGGCGATGATGG+TGG | 0.679247 | tig0036999:-2378 | Msa1456190:CDS |
| GAAGGCGAAAACAGAGAAGG+CGG | 0.688473 | tig0036999:+2589 | Msa1456190:intergenic |
| GCGAGAGTAGGTGAGGACGT+TGG | 0.696020 | tig0036999:-2390 | Msa1456190:CDS |
| GACAATGAGATTAACGGACG+CGG | 0.704201 | tig0036999:-2354 | Msa1456190:CDS |
| GGACTAATGTAATGCAGCAG+CGG | 0.726893 | tig0036999:-190 | Msa1456190:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTTTTTACATGATTT+AGG | - | tig0036999:951-970 | Msa1456190:intron | 10.0% |
| !! | GATTAAAAAAAATGATAAAA+TGG | + | tig0036999:2047-2066 | Msa1456190:intergenic | 10.0% |
| !!! | ATATCATTATCATAAATTTT+AGG | - | tig0036999:2214-2233 | Msa1456190:three_prime_UTR | 10.0% |
| !!! | TGTGAAAATATTTTTGTTTT+GGG | - | tig0036999:339-358 | Msa1456190:intron | 15.0% |
| !! | AATCATGTAAAAAAAATAAG+AGG | + | tig0036999:950-969 | Msa1456190:intergenic | 15.0% |
| !!! | TCAAATGCATTTTATTTTAA+AGG | - | tig0036999:1151-1170 | Msa1456190:intron | 15.0% |
| !! | TTCAAAAAAGTTTGAAAAAT+CGG | - | tig0036999:1235-1254 | Msa1456190:intron | 15.0% |
| !!! | TAATTTTCTATTTAGTTGAA+GGG | + | tig0036999:1571-1590 | Msa1456190:intergenic | 15.0% |
| !!! | ATAATTTTCTATTTAGTTGA+AGG | + | tig0036999:1572-1591 | Msa1456190:intergenic | 15.0% |
| !! | TCAACTAAATAGAAAATTAT+AGG | - | tig0036999:1572-1591 | Msa1456190:intron | 15.0% |
| !! | CAACTAAATAGAAAATTATA+GGG | - | tig0036999:1573-1592 | Msa1456190:intron | 15.0% |
| !! | TATCAGAAATAAAATGATAA+TGG | + | tig0036999:1776-1795 | Msa1456190:intergenic | 15.0% |
| !! | AATATATGTTATCATGATTT+AGG | - | tig0036999:1867-1886 | Msa1456190:intron | 15.0% |
| !!! | ATCATTTTTTTTAATCAGTT+TGG | - | tig0036999:2051-2070 | Msa1456190:three_prime_UTR | 15.0% |
| !!! | ATCATTTTATCATTTATGTT+AGG | - | tig0036999:2104-2123 | Msa1456190:intron | 15.0% |
| !!! | TATTCTATAAGCATATATTT+TGG | + | tig0036999:2482-2501 | Msa1456190:intergenic | 15.0% |
| !!! | CTGTGAAAATATTTTTGTTT+TGG | - | tig0036999:338-357 | Msa1456190:intron | 20.0% |
| !!! | TTTTGGGTTTTTGTTTAAAA+AGG | - | tig0036999:355-374 | Msa1456190:intron | 20.0% |
| !!! | TCTTCTTCTATCTTTAATTT+TGG | - | tig0036999:1017-1036 | Msa1456190:intron | 20.0% |
| !!! | ACATTTGAAACAATATATCA+AGG | + | tig0036999:1050-1069 | Msa1456190:intergenic | 20.0% |
| !! | TTGATATATTGTTTCAAATG+TGG | - | tig0036999:1049-1068 | Msa1456190:intron | 20.0% |
| !!! | TTTATCTTTTGGAAAATCAA+TGG | + | tig0036999:1417-1436 | Msa1456190:intergenic | 20.0% |
| !!! | TGATTTTCCAAAAGATAAAA+AGG | - | tig0036999:1418-1437 | Msa1456190:intron | 20.0% |
| !!! | TATGTTACCTTTTTATCTTT+TGG | + | tig0036999:1428-1447 | Msa1456190:intergenic | 20.0% |
| !!! | ACATATATCATCTTTTTATC+TGG | - | tig0036999:1443-1462 | Msa1456190:intron | 20.0% |
| !!! | AATTTTCTATTTAGTTGAAG+GGG | + | tig0036999:1570-1589 | Msa1456190:intergenic | 20.0% |
| !!! | CTTAAAATCATTTAATTTCC+TGG | + | tig0036999:1628-1647 | Msa1456190:intergenic | 20.0% |
| !!! | ATGATTTAGGTTTATTTCAT+TGG | - | tig0036999:1880-1899 | Msa1456190:intron | 20.0% |
| !! | TTAAATACTTAAAGAAGAAC+AGG | + | tig0036999:1998-2017 | Msa1456190:intergenic | 20.0% |
| !! | TTGAAAGAAAAAGATACAAT+TGG | - | tig0036999:2174-2193 | Msa1456190:intron | 20.0% |
| !! | TGAAAGAAAAAGATACAATT+GGG | - | tig0036999:2175-2194 | Msa1456190:intron | 20.0% |
| !! | ACTATTGATTGTGAGAAAAA+TGG | + | tig0036999:186-205 | None:intergenic | 25.0% |
| !! | TCAGATTGTCATATTTTGTA+CGG | - | tig0036999:741-760 | Msa1456190:intron | 25.0% |
| !! | ATTTAGGTGATTTTTGCATT+TGG | - | tig0036999:967-986 | Msa1456190:intron | 25.0% |
| !!! | CTTCTATCTTTAATTTTGGT+TGG | - | tig0036999:1021-1040 | Msa1456190:intron | 25.0% |
| ! | TTATGTTAAGCATATACTAC+TGG | - | tig0036999:1736-1755 | Msa1456190:intron | 25.0% |
| ! | AGTATTTAATTCTGATCACT+TGG | - | tig0036999:2009-2028 | Msa1456190:three_prime_UTR | 25.0% |
| !! | GTGAGAAAAATGGCTTTAAA+GGG | + | tig0036999:176-195 | None:intergenic | 30.0% |
| !! | TGTGAGAAAAATGGCTTTAA+AGG | + | tig0036999:177-196 | None:intergenic | 30.0% |
| !! | AACAATAACCTTCACTTTTG+CGG | + | tig0036999:631-650 | Msa1456190:intergenic | 30.0% |
| !!! | AATGTATTTTTGAGTGAGAG+AGG | + | tig0036999:663-682 | Msa1456190:intergenic | 30.0% |
| TTCTCTTGGGATTTAAATCA+CGG | + | tig0036999:1111-1130 | Msa1456190:intergenic | 30.0% | |
| ! | TTGAAATGTGTTGTTCTCTT+GGG | + | tig0036999:1124-1143 | Msa1456190:intergenic | 30.0% |
| ! | TTTGAAATGTGTTGTTCTCT+TGG | + | tig0036999:1125-1144 | Msa1456190:intergenic | 30.0% |
| TTCGATTCAATACTCAGTTA+TGG | - | tig0036999:1199-1218 | Msa1456190:intron | 30.0% | |
| ! | AACATGTGACAATTCAAGTT+GGG | + | tig0036999:1599-1618 | Msa1456190:intergenic | 30.0% |
| AAACATGTGACAATTCAAGT+TGG | + | tig0036999:1600-1619 | Msa1456190:intergenic | 30.0% | |
| TTGTCACATGTTTATAATCC+AGG | - | tig0036999:1607-1626 | Msa1456190:intron | 30.0% | |
| TGTTAACTTCATTTATCCCT+TGG | + | tig0036999:1657-1676 | Msa1456190:intergenic | 30.0% | |
| !! | TCAACTTCATATACTGGTTT+GGG | + | tig0036999:1836-1855 | Msa1456190:intergenic | 30.0% |
| ! | TTCAACTTCATATACTGGTT+TGG | + | tig0036999:1837-1856 | Msa1456190:intergenic | 30.0% |
| TGTACTTCAACTTCATATAC+TGG | + | tig0036999:1842-1861 | Msa1456190:intergenic | 30.0% | |
| CTTACTGGATATCAATATGT+TGG | - | tig0036999:1929-1948 | Msa1456190:intron | 30.0% | |
| TATACAAACTCAATACATGC+CGG | + | tig0036999:1959-1978 | Msa1456190:intergenic | 30.0% | |
| ! | TCATTTTGTCTCATTCTGTT+AGG | - | tig0036999:2131-2150 | Msa1456190:intron | 30.0% |
| ! | CAATAAGAAGCATGGAATAA+AGG | + | tig0036999:2408-2427 | Msa1456190:intergenic | 30.0% |
| TTGATACTCAATAAGAAGCA+TGG | + | tig0036999:2416-2435 | Msa1456190:intergenic | 30.0% | |
| !!! | TTTTGGAGTTATGCTAACTA+AGG | + | tig0036999:2465-2484 | Msa1456190:intergenic | 30.0% |
| !! | TTTTCTGCATAATTTAGAGC+TGG | - | tig0036999:2597-2616 | Msa1456190:CDS | 30.0% |
| !!! | CATAATTTAGAGCTGGTTTT+CGG | - | tig0036999:2604-2623 | Msa1456190:CDS | 30.0% |
| ! | AGGTTGTTGATGTTGTGTTT+TGG | - | tig0036999:375-394 | Msa1456190:intron | 35.0% |
| ! | GGTTGTTGATGTTGTGTTTT+GGG | - | tig0036999:376-395 | Msa1456190:intron | 35.0% |
| ! | GTTGTTGATGTTGTGTTTTG+GGG | - | tig0036999:377-396 | Msa1456190:intron | 35.0% |
| !!! | TCTGTTACTTTTTCTGTGCA+GGG | - | tig0036999:708-727 | Msa1456190:intron | 35.0% |
| CGTCAACATTGAACATATTC+CGG | + | tig0036999:802-821 | Msa1456190:intergenic | 35.0% | |
| ! | AGGTGATTTTTGCATTTGGT+TGG | - | tig0036999:971-990 | Msa1456190:intron | 35.0% |
| TACAATTACTGAGCAAACAG+AGG | + | tig0036999:1305-1324 | Msa1456190:intergenic | 35.0% | |
| ! | TTAAGTGTTTTCTCACCAAG+TGG | - | tig0036999:1485-1504 | Msa1456190:intron | 35.0% |
| ! | TAAGTGTTTTCTCACCAAGT+GGG | - | tig0036999:1486-1505 | Msa1456190:intron | 35.0% |
| ACGATTCATCTTCGGTTAAA+AGG | + | tig0036999:1515-1534 | Msa1456190:intergenic | 35.0% | |
| AATGATGCACGATTCATCTT+CGG | + | tig0036999:1523-1542 | Msa1456190:intergenic | 35.0% | |
| !! | ATGATTTTAAGTGCCAACCA+AGG | - | tig0036999:1637-1656 | Msa1456190:intron | 35.0% |
| !! | TGATTTTAAGTGCCAACCAA+GGG | - | tig0036999:1638-1657 | Msa1456190:intron | 35.0% |
| AACTTCATTTATCCCTTGGT+TGG | + | tig0036999:1653-1672 | Msa1456190:intergenic | 35.0% | |
| ! | GGAATAGTTTGTGCAAGATA+TGG | + | tig0036999:1814-1833 | Msa1456190:intergenic | 35.0% |
| !! | CAACTTCATATACTGGTTTG+GGG | + | tig0036999:1835-1854 | Msa1456190:intergenic | 35.0% |
| ACTGGATATCAATATGTTGG+TGG | - | tig0036999:1932-1951 | Msa1456190:intron | 35.0% | |
| CTGGATATCAATATGTTGGT+GGG | - | tig0036999:1933-1952 | Msa1456190:intron | 35.0% | |
| TGTGCTTAACTATTCAGAGT+TGG | - | tig0036999:2531-2550 | Msa1456190:CDS | 35.0% | |
| ! | AACTATTCAGAGTTGGTTCA+AGG | - | tig0036999:2538-2557 | Msa1456190:CDS | 35.0% |
| TTAGAAGGCGAAAACAGAGA+AGG | + | tig0036999:239-258 | None:intergenic | 40.0% | |
| TCACAGATGTCAGAATGATG+CGG | + | tig0036999:324-343 | Msa1456190:intergenic | 40.0% | |
| TGAGGCAGAGAGAACAAATA+CGG | - | tig0036999:407-426 | Msa1456190:intron | 40.0% | |
| GGTGGTGACAATGAGATTAA+CGG | - | tig0036999:462-481 | Msa1456190:intron | 40.0% | |
| !!! | CTCTGTTACTTTTTCTGTGC+AGG | - | tig0036999:707-726 | Msa1456190:intron | 40.0% |
| CAACATTGAACATATTCCGG+TGG | + | tig0036999:799-818 | Msa1456190:intergenic | 40.0% | |
| CCTAGTATTCCTCAAACCTA+GGG | + | tig0036999:872-891 | Msa1456190:intergenic | 40.0% | |
| TCCTAGTATTCCTCAAACCT+AGG | + | tig0036999:873-892 | Msa1456190:intergenic | 40.0% | |
| ATTACTGAGCAAACAGAGGA+AGG | + | tig0036999:1301-1320 | Msa1456190:intergenic | 40.0% | |
| ! | TCACCAACACGAGTTATTTC+AGG | - | tig0036999:1346-1365 | Msa1456190:intron | 40.0% |
| ! | AAGTGTTTTCTCACCAAGTG+GGG | - | tig0036999:1487-1506 | Msa1456190:intron | 40.0% |
| ATGAATCGTGCATCATTGCT+TGG | - | tig0036999:1526-1545 | Msa1456190:intron | 40.0% | |
| !! | CATTGCTTGGTCTTGAAGAA+TGG | - | tig0036999:1539-1558 | Msa1456190:intron | 40.0% |
| TGTGATGTTGAACTTGATGC+TGG | - | tig0036999:1707-1726 | Msa1456190:intron | 40.0% | |
| ! | ATATCAATATGTTGGTGGGC+CGG | - | tig0036999:1937-1956 | Msa1456190:intron | 40.0% |
| AGTTCGTGAGATTGATATCG+AGG | - | tig0036999:2247-2266 | Msa1456190:three_prime_UTR | 40.0% | |
| ACAAATACGGAAGCGAGAGT+AGG | - | tig0036999:420-439 | Msa1456190:intron | 45.0% | |
| ! | GACAATGAGATTAACGGACG+CGG | - | tig0036999:468-487 | Msa1456190:intron | 45.0% |
| TTGAGTGAGAGAGGAGAGAA+AGG | + | tig0036999:654-673 | Msa1456190:intergenic | 45.0% | |
| GTTCAATGTTGACGAGAGAC+CGG | - | tig0036999:808-827 | Msa1456190:intron | 45.0% | |
| ! | CAGTAGATTCGGTTGTTCTC+CGG | + | tig0036999:830-849 | Msa1456190:intergenic | 45.0% |
| CCCTAGGTTTGAGGAATACT+AGG | - | tig0036999:869-888 | Msa1456190:three_prime_UTR | 45.0% | |
| CCTCCTGAAATAACTCGTGT+TGG | + | tig0036999:1352-1371 | Msa1456190:intergenic | 45.0% | |
| ! | CCAACACGAGTTATTTCAGG+AGG | - | tig0036999:1349-1368 | Msa1456190:intron | 45.0% |
| !! | CTTGGTCTTGAAGAATGGAG+AGG | - | tig0036999:1544-1563 | Msa1456190:intron | 45.0% |
| TGTTGAACTTGATGCTGGCA+TGG | - | tig0036999:1712-1731 | Msa1456190:intron | 45.0% | |
| ATTGGAGAAGATGCCATCGA+TGG | - | tig0036999:1898-1917 | Msa1456190:intron | 45.0% | |
| CATAATTTCGAGCGAAGTCG+TGG | - | tig0036999:2571-2590 | Msa1456190:CDS | 45.0% | |
| GGACTAATGTAATGCAGCAG+CGG | - | tig0036999:2632-2651 | Msa1456190:CDS | 45.0% | |
| AGGTAGAGAAGGAGAGAAGG+CGG | + | tig0036999:211-230 | None:intergenic | 50.0% | |
| GAAGGCGAAAACAGAGAAGG+CGG | + | tig0036999:236-255 | None:intergenic | 50.0% | |
| !! | GCCTTCTAACTTGCTTCAGC+TGG | - | tig0036999:250-269 | Msa1456190:three_prime_UTR | 50.0% |
| GCCAGCTGAAGCAAGTTAGA+AGG | + | tig0036999:254-273 | Msa1456190:intergenic | 50.0% | |
| GAAAACAGAGAAAGCGGCGA+GGG | + | tig0036999:300-319 | Msa1456190:intergenic | 50.0% | |
| TGCGGCGAAAACAGAGAAAG+CGG | + | tig0036999:306-325 | Msa1456190:intergenic | 50.0% | |
| !!! | GTGTTTTGGGGAAGAGTGTG+AGG | - | tig0036999:389-408 | Msa1456190:intron | 50.0% |
| ! | AGATTAACGGACGCGGTGAA+GGG | - | tig0036999:475-494 | Msa1456190:intron | 50.0% |
| TGGAGGATTGCTGGAGACAA+TGG | - | tig0036999:600-619 | Msa1456190:three_prime_UTR | 50.0% | |
| TGGCACAACCGCAAAAGTGA+AGG | - | tig0036999:620-639 | Msa1456190:three_prime_UTR | 50.0% | |
| ! | TTTTTCTGTGCAGGGCAGTG+AGG | - | tig0036999:716-735 | Msa1456190:intron | 50.0% |
| ! | TTTTCTGTGCAGGGCAGTGA+GGG | - | tig0036999:717-736 | Msa1456190:intron | 50.0% |
| TCCAGATTCATCAGCCGCAA+CGG | - | tig0036999:767-786 | Msa1456190:intron | 50.0% | |
| CGAGGTCGCAACAGTAGATT+CGG | + | tig0036999:841-860 | Msa1456190:intergenic | 50.0% | |
| AAACCTAGGGTTCGTTAGCG+AGG | + | tig0036999:859-878 | Msa1456190:intergenic | 50.0% | |
| GCTAACGAACCCTAGGTTTG+AGG | - | tig0036999:860-879 | Msa1456190:three_prime_UTR | 50.0% | |
| AATCGGCCTGAATGTCAACG+CGG | - | tig0036999:1252-1271 | Msa1456190:intron | 50.0% | |
| ! | GACTAACCGCGTTGACATTC+AGG | + | tig0036999:1261-1280 | Msa1456190:intergenic | 50.0% |
| GTAAGCTCAAGCTCCATCGA+TGG | + | tig0036999:1914-1933 | Msa1456190:intergenic | 50.0% | |
| TCGATGGAGCTTGAGCTTAC+TGG | - | tig0036999:1914-1933 | Msa1456190:intron | 50.0% | |
| !!! | TAGAGCTGGTTTTCGGCATG+TGG | - | tig0036999:2611-2630 | Msa1456190:CDS | 50.0% |
| ! | GTAATGCAGCAGCGGTGTTT+TGG | - | tig0036999:2640-2659 | Msa1456190:CDS | 50.0% |
| GCGAGGTAGAGAAGGAGAGA+AGG | + | tig0036999:214-233 | None:intergenic | 55.0% | |
| CGAAAACAGAGAAAGCGGCG+AGG | + | tig0036999:301-320 | Msa1456190:intergenic | 55.0% | |
| TACGGAAGCGAGAGTAGGTG+AGG | - | tig0036999:425-444 | Msa1456190:intron | 55.0% | |
| ! | GAGATTAACGGACGCGGTGA+AGG | - | tig0036999:474-493 | Msa1456190:intron | 55.0% |
| AAGGGCGATGAGAGCGATTC+CGG | - | tig0036999:493-512 | Msa1456190:intron | 55.0% | |
| GATGAGAGCGATTCCGGTGA+AGG | - | tig0036999:499-518 | Msa1456190:intron | 55.0% | |
| CTCTTTGCATGCGCTAGCAG+CGG | - | tig0036999:571-590 | Msa1456190:three_prime_UTR | 55.0% | |
| TCCGTTGCGGCTGATGAATC+TGG | + | tig0036999:771-790 | Msa1456190:intergenic | 55.0% | |
| TCCGGTGGTTTCATCCGTTG+CGG | + | tig0036999:784-803 | Msa1456190:intergenic | 55.0% | |
| CGGTTAAAAGGCTCCCCACT+TGG | + | tig0036999:1503-1522 | Msa1456190:intergenic | 55.0% | |
| AGAAGGCGGCGAGGTAGAGA+AGG | + | tig0036999:222-241 | None:intergenic | 60.0% | |
| CGAAAACAGAGAAGGCGGCG+AGG | + | tig0036999:231-250 | None:intergenic | 60.0% | |
| AGAAAGCGGCGAGGGAGAGA+AGG | + | tig0036999:292-311 | Msa1456190:intergenic | 60.0% | |
| GCGAGAGTAGGTGAGGACGT+TGG | - | tig0036999:432-451 | Msa1456190:intron | 60.0% | |
| GGTGAGGACGTTGGCGATGA+TGG | - | tig0036999:441-460 | Msa1456190:intron | 60.0% | |
| ! | GAGGACGTTGGCGATGATGG+TGG | - | tig0036999:444-463 | Msa1456190:intron | 60.0% |
| !! | TCCGGTGAAGGTGTCTGCGT+CGG | - | tig0036999:511-530 | Msa1456190:intron | 60.0% |
| GCCGCAACGGATGAAACCAC+CGG | - | tig0036999:780-799 | Msa1456190:intron | 60.0% | |
| CGACCTCGCTAACGAACCCT+AGG | - | tig0036999:853-872 | Msa1456190:three_prime_UTR | 60.0% | |
| GCCGACGCAGACACCTTCAC+CGG | + | tig0036999:515-534 | Msa1456190:intergenic | 65.0% | |
| TGCATGCGCTAGCAGCGGCG+AGG | - | tig0036999:576-595 | Msa1456190:three_prime_UTR | 70.0% | |
| GCATGCGCTAGCAGCGGCGA+GGG | - | tig0036999:577-596 | Msa1456190:three_prime_UTR | 70.0% | |
| CGGCGAGGGTGGAGGATTGC+TGG | - | tig0036999:591-610 | Msa1456190:three_prime_UTR | 70.0% | |
| TGCGCTAGCAGCGGCGAGGG+TGG | - | tig0036999:580-599 | Msa1456190:three_prime_UTR | 75.0% | |
| GCTAGCAGCGGCGAGGGTGG+AGG | - | tig0036999:583-602 | Msa1456190:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0036999 | gene | 160 | 2684 | 160 | ID=Msa1456190;Name=Msa1456190 |
| tig0036999 | mRNA | 160 | 2684 | 160 | ID=Msa1456190-mRNA-1;Parent=Msa1456190;Name=Msa1456190-mRNA-1;_AED=0.30;_eAED=0.30;_QI=2|1|1|1|0.5|0.6|5|743|113 |
| tig0036999 | exon | 160 | 317 | 160 | ID=Msa1456190-mRNA-1:exon:20631;Parent=Msa1456190-mRNA-1 |
| tig0036999 | exon | 560 | 718 | 560 | ID=Msa1456190-mRNA-1:exon:20630;Parent=Msa1456190-mRNA-1 |
| tig0036999 | exon | 814 | 955 | 814 | ID=Msa1456190-mRNA-1:exon:20629;Parent=Msa1456190-mRNA-1 |
| tig0036999 | exon | 1970 | 2115 | 1970 | ID=Msa1456190-mRNA-1:exon:20628;Parent=Msa1456190-mRNA-1 |
| tig0036999 | exon | 2203 | 2684 | 2203 | ID=Msa1456190-mRNA-1:exon:20627;Parent=Msa1456190-mRNA-1 |
| tig0036999 | five_prime_UTR | 2683 | 2684 | 2683 | ID=Msa1456190-mRNA-1:five_prime_utr;Parent=Msa1456190-mRNA-1 |
| tig0036999 | CDS | 2341 | 2682 | 2341 | ID=Msa1456190-mRNA-1:cds;Parent=Msa1456190-mRNA-1 |
| tig0036999 | three_prime_UTR | 2203 | 2340 | 2203 | ID=Msa1456190-mRNA-1:three_prime_utr;Parent=Msa1456190-mRNA-1 |
| tig0036999 | three_prime_UTR | 1970 | 2115 | 1970 | ID=Msa1456190-mRNA-1:three_prime_utr;Parent=Msa1456190-mRNA-1 |
| tig0036999 | three_prime_UTR | 814 | 955 | 814 | ID=Msa1456190-mRNA-1:three_prime_utr;Parent=Msa1456190-mRNA-1 |
| tig0036999 | three_prime_UTR | 560 | 718 | 560 | ID=Msa1456190-mRNA-1:three_prime_utr;Parent=Msa1456190-mRNA-1 |
| tig0036999 | three_prime_UTR | 160 | 317 | 160 | ID=Msa1456190-mRNA-1:three_prime_utr;Parent=Msa1456190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
