AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1284900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1284900 MtrunA17_Chr8g0358261 90.159 315 19 6 23 330 1 310 0.0 548
Msa1284900 MtrunA17_Chr2g0311981 43.570 381 147 10 1 329 1 365 6.20e-89 271
Msa1284900 MtrunA17_Chr4g0043501 35.758 330 173 8 1 329 1 292 1.12e-59 193
Msa1284900 MtrunA17_Chr2g0291661 33.978 362 162 12 1 329 1 318 5.15e-57 187
Msa1284900 MtrunA17_Chr5g0400041 32.589 224 124 4 109 329 135 334 4.65e-30 117
Msa1284900 MtrunA17_Chr1g0153261 29.333 225 137 5 103 327 136 338 1.34e-23 99.4
Msa1284900 MtrunA17_Chr4g0055201 31.696 224 123 5 109 329 135 331 4.71e-22 94.7
Msa1284900 MtrunA17_Chr4g0018631 27.723 202 107 5 118 317 35 199 1.58e-20 88.2
Msa1284900 MtrunA17_Chr3g0145641 28.293 205 101 4 121 325 20 178 1.81e-19 84.7
Msa1284900 MtrunA17_Chr2g0319361 26.190 210 113 4 118 327 83 250 2.79e-13 68.9
Msa1284900 MtrunA17_Chr4g0017931 23.750 240 138 6 90 327 52 248 6.75e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1284900 AT3G12920.1 39.216 357 165 13 1 329 1 333 1.49e-66 213
Msa1284900 AT5G45100.1 35.417 336 166 9 1 329 1 292 9.00e-59 191
Msa1284900 AT1G79110.2 37.568 370 173 12 1 329 1 353 2.21e-57 189
Msa1284900 AT1G79110.3 46.256 227 109 5 107 329 114 331 2.60e-55 183
Msa1284900 AT1G79110.1 37.265 373 173 13 1 329 1 356 3.25e-55 184
Msa1284900 AT5G45100.2 37.838 259 123 6 73 329 43 265 1.35e-54 179
Msa1284900 AT4G19700.1 34.118 340 175 12 1 329 1 302 4.47e-51 172
Msa1284900 AT4G35070.2 32.558 215 118 5 114 327 19 207 1.50e-25 102
Msa1284900 AT4G35070.1 32.864 213 116 5 114 325 74 260 1.70e-25 103
Msa1284900 AT1G32740.3 29.680 219 128 6 110 325 68 263 5.07e-23 96.7
Msa1284900 AT1G32740.2 29.680 219 128 6 110 325 68 263 5.07e-23 96.7
Msa1284900 AT1G32740.4 29.680 219 128 6 110 325 101 296 5.97e-23 97.4
Msa1284900 AT1G32740.1 29.680 219 128 6 110 325 112 307 6.68e-23 97.4
Msa1284900 AT1G60610.2 27.193 228 135 5 107 327 134 337 1.10e-22 97.1
Msa1284900 AT1G60610.4 27.193 228 135 5 107 327 134 337 1.10e-22 97.1
Msa1284900 AT1G60610.1 27.193 228 135 5 107 327 134 337 1.10e-22 97.1
Msa1284900 AT1G60610.5 27.193 228 135 5 107 327 134 337 1.10e-22 97.1
Msa1284900 AT1G60610.3 27.193 228 135 5 107 327 134 337 1.10e-22 97.1
Msa1284900 AT1G45976.1 27.679 224 123 3 109 327 134 323 2.65e-22 95.9
Msa1284900 AT1G10650.2 28.571 210 131 2 118 327 90 280 4.44e-22 94.4
Msa1284900 AT1G10650.1 28.571 210 131 2 118 327 146 336 5.67e-22 95.1
Msa1284900 AT4G17680.1 29.412 221 121 6 113 327 121 312 5.97e-20 89.0
Msa1284900 AT4G17680.2 29.412 221 121 6 113 327 49 240 9.43e-20 87.0
Msa1284900 AT5G47050.1 27.344 256 147 6 84 327 69 297 2.75e-17 81.3
Msa1284900 AT4G17680.3 30.952 210 107 8 125 327 10 188 7.69e-16 75.1

Find 68 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATACGAAGAGGGAAAATT+TGG 0.202045 8_3:-28191309 None:intergenic
TCATCACTGTTACCACTTTC+AGG 0.214320 8_3:+28191678 Msa1284900:CDS
TTTAAGTTTATCCAATATTA+TGG 0.248693 8_3:+28192806 Msa1284900:three_prime_UTR
TATTCATAGGAATAGTAATT+AGG 0.261245 8_3:+28192660 Msa1284900:three_prime_UTR
GTTGAAGTTGAGAAGGAAAA+AGG 0.285209 8_3:-28191475 None:intergenic
ACGGTCATGTTCTGATTCTT+AGG 0.295924 8_3:-28191434 None:intergenic
ACTGATGAAAGGGTAGTTAA+TGG 0.302408 8_3:-28191868 None:intergenic
TACATATGCAACCATAATAT+TGG 0.308804 8_3:-28192817 None:intergenic
TATACGAAGAGGGAAAATTT+GGG 0.347717 8_3:-28191308 None:intergenic
TGAGGTGAAGGTTATGGTTA+AGG 0.348241 8_3:-28191339 None:intergenic
CTTGATTAATTATTATTCAT+AGG 0.348819 8_3:+28192647 Msa1284900:exon
GAGAGAAACAATGATGATAA+TGG 0.367299 8_3:+28192097 Msa1284900:CDS
TTATGATATATGATTCTATA+AGG 0.385192 8_3:-28191379 None:intergenic
CTTCTCAACTTCAACCCAAT+AGG 0.388096 8_3:+28191483 Msa1284900:CDS
GTGTTCAATGTGTGGGGCTA+TGG 0.402214 8_3:+28192571 Msa1284900:CDS
AAGATTGTACTATACCTATT+GGG 0.415314 8_3:-28191497 None:intergenic
ATATTCATCATTACTACAAC+AGG 0.424115 8_3:-28192402 None:intergenic
AAAGATTGTGTCTGGTTTCA+CGG 0.428911 8_3:-28191790 None:intergenic
AGTAATGACGGCGCAGGATA+AGG 0.449129 8_3:+28192442 Msa1284900:CDS
TATGCATGGAGAATCAAATC+TGG 0.461576 8_3:+28192222 Msa1284900:CDS
TATGTTTGTGTTCAATGTGT+GGG 0.464104 8_3:+28192564 Msa1284900:CDS
TTGTAAGCAAAGATTGTGTC+TGG 0.484407 8_3:-28191798 None:intergenic
ATGAATATTGTGGGTGGCGT+AGG 0.488245 8_3:+28192417 Msa1284900:CDS
AGGAATAGTAATTAGGACTT+AGG 0.493262 8_3:+28192667 Msa1284900:three_prime_UTR
TTTCGCCGTTGCCGTGGCGG+AGG 0.501017 8_3:+28192370 Msa1284900:CDS
CACAAACATAAGTGTCTACA+AGG 0.505076 8_3:-28192551 None:intergenic
CGGAGGAAATCGGTTATGAA+AGG 0.505897 8_3:-28191753 None:intergenic
AGCATGCAATTGAGTTGTCA+AGG 0.507086 8_3:-28191248 None:intergenic
ATTAGGACTTAGGAGATGGT+AGG 0.515944 8_3:+28192677 Msa1284900:three_prime_UTR
GATTTAACAGAATCACATAT+AGG 0.518774 8_3:-28192605 None:intergenic
AAGGATGAAGGTACTAGTAG+TGG 0.520250 8_3:+28192461 Msa1284900:CDS
AAAAGTGAAAACACTATGCA+TGG 0.524997 8_3:+28192208 Msa1284900:CDS
AGCATCCTCCGCCACGGCAA+CGG 0.528025 8_3:-28192375 None:intergenic
TGTAGTAATGATGAATATTG+TGG 0.529768 8_3:+28192407 Msa1284900:CDS
GGCGGTGAATATAGCGGTGG+CGG 0.536827 8_3:+28192344 Msa1284900:CDS
AGTAATTAGGACTTAGGAGA+TGG 0.538855 8_3:+28192673 Msa1284900:three_prime_UTR
ATAGATTATGCAGAAACTGT+GGG 0.542740 8_3:+28192501 Msa1284900:CDS
TTATGTTTGTGTTCAATGTG+TGG 0.554213 8_3:+28192563 Msa1284900:CDS
GTTGAGATGGTGAGCATCGA+CGG 0.556642 8_3:-28191453 None:intergenic
TTAGACGGAGAAGTTTAGAG+TGG 0.557294 8_3:+28192055 Msa1284900:intron
CAAAACAACAACAACGGTGA+CGG 0.564027 8_3:+28192323 Msa1284900:CDS
CATGTTTGTATAATTTGTGT+CGG 0.569763 8_3:-28191643 None:intergenic
CGGAGATTTCGCCGTTGCCG+TGG 0.573061 8_3:+28192364 Msa1284900:CDS
AATAGATTATGCAGAAACTG+TGG 0.573162 8_3:+28192500 Msa1284900:CDS
GTAGTAATGATGAATATTGT+GGG 0.574573 8_3:+28192408 Msa1284900:CDS
CTATTGGGTTGAAGTTGAGA+AGG 0.576004 8_3:-28191482 None:intergenic
GGAGGAAATCGGTTATGAAA+GGG 0.577225 8_3:-28191752 None:intergenic
TTATGCAGAAACTGTGGGGA+AGG 0.589265 8_3:+28192506 Msa1284900:CDS
ATGTTTGTGTTCAATGTGTG+GGG 0.595264 8_3:+28192565 Msa1284900:CDS
ACGGCGCAGGATAAGGATGA+AGG 0.596413 8_3:+28192449 Msa1284900:CDS
AGATTTCGCCGTTGCCGTGG+CGG 0.600219 8_3:+28192367 Msa1284900:CDS
TGAATATTGTGGGTGGCGTA+GGG 0.602718 8_3:+28192418 Msa1284900:CDS
GTTATGAAAGGGTTGTTCGA+CGG 0.613447 8_3:-28191741 None:intergenic
AACAACAACAACGGTGACGG+CGG 0.614759 8_3:+28192326 Msa1284900:CDS
ACGGTGGTTGTGCCTGAAAG+TGG 0.615359 8_3:-28191690 None:intergenic
GGACTCAGCATCCTCCGCCA+CGG 0.618076 8_3:-28192381 None:intergenic
TTGTTCGACGGAGATTGCGA+CGG 0.619398 8_3:-28191729 None:intergenic
TAGGGTAGTAATGACGGCGC+AGG 0.626421 8_3:+28192436 Msa1284900:CDS
GTGGCGTAGGGTAGTAATGA+CGG 0.629194 8_3:+28192430 Msa1284900:CDS
TTCAGGCACAACCACCGTGT+CGG 0.634510 8_3:+28191695 Msa1284900:CDS
ATACGAAGAGGGAAAATTTG+GGG 0.634968 8_3:-28191307 None:intergenic
AGAAATGAAGTTGTCGATGT+CGG 0.644465 8_3:-28191925 None:intergenic
GACGGCGGTGAATATAGCGG+TGG 0.649427 8_3:+28192341 Msa1284900:CDS
CAAATGCAAAACAACAACAA+CGG 0.683345 8_3:+28192317 Msa1284900:CDS
GGTGACGGCGGTGAATATAG+CGG 0.696342 8_3:+28192338 Msa1284900:CDS
TAGATTATGCAGAAACTGTG+GGG 0.698504 8_3:+28192502 Msa1284900:CDS
GTAATGATGAATATTGTGGG+TGG 0.732674 8_3:+28192411 Msa1284900:CDS
GATTGTGTCTGGTTTCACGG+TGG 0.737359 8_3:-28191787 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATGATATATGATTCTATA+AGG - chr8_3:28191382-28191401 None:intergenic 15.0%
!! AAAACAAATTTAGTAGAATA+AGG - chr8_3:28191969-28191988 None:intergenic 15.0%
!! CTTGATTAATTATTATTCAT+AGG + chr8_3:28192647-28192666 Msa1284900:exon 15.0%
!!! ATATTTTGTTAGGTTTTTTT+TGG + chr8_3:28192745-28192764 Msa1284900:three_prime_UTR 15.0%
!!! TTTTTTTTGGTACAATATTA+TGG + chr8_3:28192758-28192777 Msa1284900:three_prime_UTR 15.0%
!!! GGTTTTATTTTAATATACAA+TGG + chr8_3:28192783-28192802 Msa1284900:three_prime_UTR 15.0%
!!! TTTAAGTTTATCCAATATTA+TGG + chr8_3:28192806-28192825 Msa1284900:three_prime_UTR 15.0%
!! TTATGATATATGATTCTATA+AGG - chr8_3:28191382-28191401 None:intergenic 15.0%
!! AAAACAAATTTAGTAGAATA+AGG - chr8_3:28191969-28191988 None:intergenic 15.0%
!! CTTGATTAATTATTATTCAT+AGG + chr8_3:28192647-28192666 Msa1284900:exon 15.0%
!!! ATATTTTGTTAGGTTTTTTT+TGG + chr8_3:28192745-28192764 Msa1284900:three_prime_UTR 15.0%
!!! TTTTTTTTGGTACAATATTA+TGG + chr8_3:28192758-28192777 Msa1284900:three_prime_UTR 15.0%
!!! GGTTTTATTTTAATATACAA+TGG + chr8_3:28192783-28192802 Msa1284900:three_prime_UTR 15.0%
!!! TTTAAGTTTATCCAATATTA+TGG + chr8_3:28192806-28192825 Msa1284900:three_prime_UTR 15.0%
!! ACAAAACAAAACAAAAAACA+TGG - chr8_3:28191560-28191579 None:intergenic 20.0%
!! AAATTTAGTAGAATAAGGTA+AGG - chr8_3:28191964-28191983 None:intergenic 20.0%
!!! TGTTCATTCTTTCAATTTTT+TGG - chr8_3:28192175-28192194 None:intergenic 20.0%
!! TATTCATAGGAATAGTAATT+AGG + chr8_3:28192660-28192679 Msa1284900:three_prime_UTR 20.0%
!!! TTTTTTCTTCTTGGATATAA+TGG + chr8_3:28192700-28192719 Msa1284900:three_prime_UTR 20.0%
!!! TTTTTCTTCTTGGATATAAT+GGG + chr8_3:28192701-28192720 Msa1284900:three_prime_UTR 20.0%
!!! TTTGGTGATTATATTTTGTT+AGG + chr8_3:28192735-28192754 Msa1284900:three_prime_UTR 20.0%
!! ACAAAACAAAACAAAAAACA+TGG - chr8_3:28191560-28191579 None:intergenic 20.0%
!! AAATTTAGTAGAATAAGGTA+AGG - chr8_3:28191964-28191983 None:intergenic 20.0%
!!! TGTTCATTCTTTCAATTTTT+TGG - chr8_3:28192175-28192194 None:intergenic 20.0%
!! TATTCATAGGAATAGTAATT+AGG + chr8_3:28192660-28192679 Msa1284900:three_prime_UTR 20.0%
!!! TTTTTTCTTCTTGGATATAA+TGG + chr8_3:28192700-28192719 Msa1284900:three_prime_UTR 20.0%
!!! TTTTTCTTCTTGGATATAAT+GGG + chr8_3:28192701-28192720 Msa1284900:three_prime_UTR 20.0%
!!! TTTGGTGATTATATTTTGTT+AGG + chr8_3:28192735-28192754 Msa1284900:three_prime_UTR 20.0%
!!! TAGTATTTATTTTGAGGTGA+AGG - chr8_3:28191354-28191373 None:intergenic 25.0%
!!! GTGTAGTAGTATTTATTTTG+AGG - chr8_3:28191360-28191379 None:intergenic 25.0%
! AAGATTGTACTATACCTATT+GGG - chr8_3:28191500-28191519 None:intergenic 25.0%
! CAAAACAAAAAACATGGTTT+AGG - chr8_3:28191554-28191573 None:intergenic 25.0%
!! CATGTTTGTATAATTTGTGT+CGG - chr8_3:28191646-28191665 None:intergenic 25.0%
! AAAAATCTTCACTGATGAAA+GGG - chr8_3:28191881-28191900 None:intergenic 25.0%
!!! TTGCATGTGTTTTTTTTAGA+CGG + chr8_3:28192040-28192059 Msa1284900:intron 25.0%
! ATATTCATCATTACTACAAC+AGG - chr8_3:28192405-28192424 None:intergenic 25.0%
! TGTAGTAATGATGAATATTG+TGG + chr8_3:28192407-28192426 Msa1284900:CDS 25.0%
! GTAGTAATGATGAATATTGT+GGG + chr8_3:28192408-28192427 Msa1284900:CDS 25.0%
! GATTTAACAGAATCACATAT+AGG - chr8_3:28192608-28192627 None:intergenic 25.0%
!!! TAATGGGACTAGTTTTATTT+TGG + chr8_3:28192717-28192736 Msa1284900:three_prime_UTR 25.0%
!! TTTTGGTACAATATTATGGT+TGG + chr8_3:28192762-28192781 Msa1284900:three_prime_UTR 25.0%
! TACATATGCAACCATAATAT+TGG - chr8_3:28192820-28192839 None:intergenic 25.0%
!!! TAGTATTTATTTTGAGGTGA+AGG - chr8_3:28191354-28191373 None:intergenic 25.0%
!!! GTGTAGTAGTATTTATTTTG+AGG - chr8_3:28191360-28191379 None:intergenic 25.0%
! AAGATTGTACTATACCTATT+GGG - chr8_3:28191500-28191519 None:intergenic 25.0%
! CAAAACAAAAAACATGGTTT+AGG - chr8_3:28191554-28191573 None:intergenic 25.0%
!! CATGTTTGTATAATTTGTGT+CGG - chr8_3:28191646-28191665 None:intergenic 25.0%
! AAAAATCTTCACTGATGAAA+GGG - chr8_3:28191881-28191900 None:intergenic 25.0%
!!! TTGCATGTGTTTTTTTTAGA+CGG + chr8_3:28192040-28192059 Msa1284900:intron 25.0%
! ATATTCATCATTACTACAAC+AGG - chr8_3:28192405-28192424 None:intergenic 25.0%
! TGTAGTAATGATGAATATTG+TGG + chr8_3:28192407-28192426 Msa1284900:CDS 25.0%
! GTAGTAATGATGAATATTGT+GGG + chr8_3:28192408-28192427 Msa1284900:CDS 25.0%
! GATTTAACAGAATCACATAT+AGG - chr8_3:28192608-28192627 None:intergenic 25.0%
!!! TAATGGGACTAGTTTTATTT+TGG + chr8_3:28192717-28192736 Msa1284900:three_prime_UTR 25.0%
!! TTTTGGTACAATATTATGGT+TGG + chr8_3:28192762-28192781 Msa1284900:three_prime_UTR 25.0%
! TACATATGCAACCATAATAT+TGG - chr8_3:28192820-28192839 None:intergenic 25.0%
TATACGAAGAGGGAAAATTT+GGG - chr8_3:28191311-28191330 None:intergenic 30.0%
ATATACGAAGAGGGAAAATT+TGG - chr8_3:28191312-28191331 None:intergenic 30.0%
GGAAAAAAGATATACGAAGA+GGG - chr8_3:28191321-28191340 None:intergenic 30.0%
AGGAAAAAAGATATACGAAG+AGG - chr8_3:28191322-28191341 None:intergenic 30.0%
!!! TTATTTTGAGGTGAAGGTTA+TGG - chr8_3:28191348-28191367 None:intergenic 30.0%
GAAGATTGTACTATACCTAT+TGG - chr8_3:28191501-28191520 None:intergenic 30.0%
!!! TATTTTTTGACGGAGGAAAT+CGG - chr8_3:28191766-28191785 None:intergenic 30.0%
!!! AATCTCTAGAACGTTTTTGT+GGG - chr8_3:28191848-28191867 None:intergenic 30.0%
GAAAAATCTTCACTGATGAA+AGG - chr8_3:28191882-28191901 None:intergenic 30.0%
GAGAGAAACAATGATGATAA+TGG + chr8_3:28192097-28192116 Msa1284900:CDS 30.0%
AAAAGTGAAAACACTATGCA+TGG + chr8_3:28192208-28192227 Msa1284900:CDS 30.0%
!! TGTTTTGCATTTGTTGCATA+AGG - chr8_3:28192310-28192329 None:intergenic 30.0%
CAAATGCAAAACAACAACAA+CGG + chr8_3:28192317-28192336 Msa1284900:CDS 30.0%
AATAGATTATGCAGAAACTG+TGG + chr8_3:28192500-28192519 Msa1284900:CDS 30.0%
ATAGATTATGCAGAAACTGT+GGG + chr8_3:28192501-28192520 Msa1284900:CDS 30.0%
TTATGTTTGTGTTCAATGTG+TGG + chr8_3:28192563-28192582 Msa1284900:CDS 30.0%
TATGTTTGTGTTCAATGTGT+GGG + chr8_3:28192564-28192583 Msa1284900:CDS 30.0%
AGGAATAGTAATTAGGACTT+AGG + chr8_3:28192667-28192686 Msa1284900:three_prime_UTR 30.0%
TATACGAAGAGGGAAAATTT+GGG - chr8_3:28191311-28191330 None:intergenic 30.0%
ATATACGAAGAGGGAAAATT+TGG - chr8_3:28191312-28191331 None:intergenic 30.0%
GGAAAAAAGATATACGAAGA+GGG - chr8_3:28191321-28191340 None:intergenic 30.0%
AGGAAAAAAGATATACGAAG+AGG - chr8_3:28191322-28191341 None:intergenic 30.0%
!!! TTATTTTGAGGTGAAGGTTA+TGG - chr8_3:28191348-28191367 None:intergenic 30.0%
GAAGATTGTACTATACCTAT+TGG - chr8_3:28191501-28191520 None:intergenic 30.0%
!!! TATTTTTTGACGGAGGAAAT+CGG - chr8_3:28191766-28191785 None:intergenic 30.0%
!!! AATCTCTAGAACGTTTTTGT+GGG - chr8_3:28191848-28191867 None:intergenic 30.0%
GAAAAATCTTCACTGATGAA+AGG - chr8_3:28191882-28191901 None:intergenic 30.0%
GAGAGAAACAATGATGATAA+TGG + chr8_3:28192097-28192116 Msa1284900:CDS 30.0%
AAAAGTGAAAACACTATGCA+TGG + chr8_3:28192208-28192227 Msa1284900:CDS 30.0%
!! TGTTTTGCATTTGTTGCATA+AGG - chr8_3:28192310-28192329 None:intergenic 30.0%
CAAATGCAAAACAACAACAA+CGG + chr8_3:28192317-28192336 Msa1284900:CDS 30.0%
AATAGATTATGCAGAAACTG+TGG + chr8_3:28192500-28192519 Msa1284900:CDS 30.0%
ATAGATTATGCAGAAACTGT+GGG + chr8_3:28192501-28192520 Msa1284900:CDS 30.0%
TTATGTTTGTGTTCAATGTG+TGG + chr8_3:28192563-28192582 Msa1284900:CDS 30.0%
TATGTTTGTGTTCAATGTGT+GGG + chr8_3:28192564-28192583 Msa1284900:CDS 30.0%
AGGAATAGTAATTAGGACTT+AGG + chr8_3:28192667-28192686 Msa1284900:three_prime_UTR 30.0%
ATACGAAGAGGGAAAATTTG+GGG - chr8_3:28191310-28191329 None:intergenic 35.0%
GTTGAAGTTGAGAAGGAAAA+AGG - chr8_3:28191478-28191497 None:intergenic 35.0%
!!! TCACGGTGGATATTTTTTGA+CGG - chr8_3:28191776-28191795 None:intergenic 35.0%
! AAAGATTGTGTCTGGTTTCA+CGG - chr8_3:28191793-28191812 None:intergenic 35.0%
TTGTAAGCAAAGATTGTGTC+TGG - chr8_3:28191801-28191820 None:intergenic 35.0%
!!! GAATCTCTAGAACGTTTTTG+TGG - chr8_3:28191849-28191868 None:intergenic 35.0%
ACTGATGAAAGGGTAGTTAA+TGG - chr8_3:28191871-28191890 None:intergenic 35.0%
AGAAATGAAGTTGTCGATGT+CGG - chr8_3:28191928-28191947 None:intergenic 35.0%
TATGCATGGAGAATCAAATC+TGG + chr8_3:28192222-28192241 Msa1284900:CDS 35.0%
GTAATGATGAATATTGTGGG+TGG + chr8_3:28192411-28192430 Msa1284900:CDS 35.0%
TAGATTATGCAGAAACTGTG+GGG + chr8_3:28192502-28192521 Msa1284900:CDS 35.0%
CACAAACATAAGTGTCTACA+AGG - chr8_3:28192554-28192573 None:intergenic 35.0%
ATGTTTGTGTTCAATGTGTG+GGG + chr8_3:28192565-28192584 Msa1284900:CDS 35.0%
AGTAATTAGGACTTAGGAGA+TGG + chr8_3:28192673-28192692 Msa1284900:three_prime_UTR 35.0%
!!! GATGGTAGGTTTTTTCTTCT+TGG + chr8_3:28192691-28192710 Msa1284900:three_prime_UTR 35.0%
ATACGAAGAGGGAAAATTTG+GGG - chr8_3:28191310-28191329 None:intergenic 35.0%
GTTGAAGTTGAGAAGGAAAA+AGG - chr8_3:28191478-28191497 None:intergenic 35.0%
!!! TCACGGTGGATATTTTTTGA+CGG - chr8_3:28191776-28191795 None:intergenic 35.0%
! AAAGATTGTGTCTGGTTTCA+CGG - chr8_3:28191793-28191812 None:intergenic 35.0%
TTGTAAGCAAAGATTGTGTC+TGG - chr8_3:28191801-28191820 None:intergenic 35.0%
!!! GAATCTCTAGAACGTTTTTG+TGG - chr8_3:28191849-28191868 None:intergenic 35.0%
ACTGATGAAAGGGTAGTTAA+TGG - chr8_3:28191871-28191890 None:intergenic 35.0%
AGAAATGAAGTTGTCGATGT+CGG - chr8_3:28191928-28191947 None:intergenic 35.0%
TATGCATGGAGAATCAAATC+TGG + chr8_3:28192222-28192241 Msa1284900:CDS 35.0%
GTAATGATGAATATTGTGGG+TGG + chr8_3:28192411-28192430 Msa1284900:CDS 35.0%
TAGATTATGCAGAAACTGTG+GGG + chr8_3:28192502-28192521 Msa1284900:CDS 35.0%
CACAAACATAAGTGTCTACA+AGG - chr8_3:28192554-28192573 None:intergenic 35.0%
ATGTTTGTGTTCAATGTGTG+GGG + chr8_3:28192565-28192584 Msa1284900:CDS 35.0%
AGTAATTAGGACTTAGGAGA+TGG + chr8_3:28192673-28192692 Msa1284900:three_prime_UTR 35.0%
!!! GATGGTAGGTTTTTTCTTCT+TGG + chr8_3:28192691-28192710 Msa1284900:three_prime_UTR 35.0%
! AGCATGCAATTGAGTTGTCA+AGG - chr8_3:28191251-28191270 None:intergenic 40.0%
TGAGGTGAAGGTTATGGTTA+AGG - chr8_3:28191342-28191361 None:intergenic 40.0%
ACGGTCATGTTCTGATTCTT+AGG - chr8_3:28191437-28191456 None:intergenic 40.0%
GAGAAGGAAAAAGGTTGAGA+TGG - chr8_3:28191469-28191488 None:intergenic 40.0%
!! CTATTGGGTTGAAGTTGAGA+AGG - chr8_3:28191485-28191504 None:intergenic 40.0%
CTTCTCAACTTCAACCCAAT+AGG + chr8_3:28191483-28191502 Msa1284900:CDS 40.0%
TCATCACTGTTACCACTTTC+AGG + chr8_3:28191678-28191697 Msa1284900:CDS 40.0%
GTTATGAAAGGGTTGTTCGA+CGG - chr8_3:28191744-28191763 None:intergenic 40.0%
GGAGGAAATCGGTTATGAAA+GGG - chr8_3:28191755-28191774 None:intergenic 40.0%
TTAGACGGAGAAGTTTAGAG+TGG + chr8_3:28192055-28192074 Msa1284900:intron 40.0%
CAAAACAACAACAACGGTGA+CGG + chr8_3:28192323-28192342 Msa1284900:CDS 40.0%
!! AAGGATGAAGGTACTAGTAG+TGG + chr8_3:28192461-28192480 Msa1284900:CDS 40.0%
ATTAGGACTTAGGAGATGGT+AGG + chr8_3:28192677-28192696 Msa1284900:three_prime_UTR 40.0%
! AGCATGCAATTGAGTTGTCA+AGG - chr8_3:28191251-28191270 None:intergenic 40.0%
TGAGGTGAAGGTTATGGTTA+AGG - chr8_3:28191342-28191361 None:intergenic 40.0%
ACGGTCATGTTCTGATTCTT+AGG - chr8_3:28191437-28191456 None:intergenic 40.0%
GAGAAGGAAAAAGGTTGAGA+TGG - chr8_3:28191469-28191488 None:intergenic 40.0%
!! CTATTGGGTTGAAGTTGAGA+AGG - chr8_3:28191485-28191504 None:intergenic 40.0%
CTTCTCAACTTCAACCCAAT+AGG + chr8_3:28191483-28191502 Msa1284900:CDS 40.0%
TCATCACTGTTACCACTTTC+AGG + chr8_3:28191678-28191697 Msa1284900:CDS 40.0%
GTTATGAAAGGGTTGTTCGA+CGG - chr8_3:28191744-28191763 None:intergenic 40.0%
GGAGGAAATCGGTTATGAAA+GGG - chr8_3:28191755-28191774 None:intergenic 40.0%
TTAGACGGAGAAGTTTAGAG+TGG + chr8_3:28192055-28192074 Msa1284900:intron 40.0%
CAAAACAACAACAACGGTGA+CGG + chr8_3:28192323-28192342 Msa1284900:CDS 40.0%
!! AAGGATGAAGGTACTAGTAG+TGG + chr8_3:28192461-28192480 Msa1284900:CDS 40.0%
ATTAGGACTTAGGAGATGGT+AGG + chr8_3:28192677-28192696 Msa1284900:three_prime_UTR 40.0%
! AATGAGATTTTCCGACACGG+TGG - chr8_3:28191709-28191728 None:intergenic 45.0%
! CGGAATGAGATTTTCCGACA+CGG - chr8_3:28191712-28191731 None:intergenic 45.0%
CGGAGGAAATCGGTTATGAA+AGG - chr8_3:28191756-28191775 None:intergenic 45.0%
!!! CGGTGGATATTTTTTGACGG+AGG - chr8_3:28191773-28191792 None:intergenic 45.0%
!! TGTCGATGTCGGTGTTTTGA+TGG - chr8_3:28191917-28191936 None:intergenic 45.0%
ATGAATATTGTGGGTGGCGT+AGG + chr8_3:28192417-28192436 Msa1284900:CDS 45.0%
TGAATATTGTGGGTGGCGTA+GGG + chr8_3:28192418-28192437 Msa1284900:CDS 45.0%
TTATGCAGAAACTGTGGGGA+AGG + chr8_3:28192506-28192525 Msa1284900:CDS 45.0%
! AATGAGATTTTCCGACACGG+TGG - chr8_3:28191709-28191728 None:intergenic 45.0%
! CGGAATGAGATTTTCCGACA+CGG - chr8_3:28191712-28191731 None:intergenic 45.0%
CGGAGGAAATCGGTTATGAA+AGG - chr8_3:28191756-28191775 None:intergenic 45.0%
!!! CGGTGGATATTTTTTGACGG+AGG - chr8_3:28191773-28191792 None:intergenic 45.0%
!! TGTCGATGTCGGTGTTTTGA+TGG - chr8_3:28191917-28191936 None:intergenic 45.0%
ATGAATATTGTGGGTGGCGT+AGG + chr8_3:28192417-28192436 Msa1284900:CDS 45.0%
TGAATATTGTGGGTGGCGTA+GGG + chr8_3:28192418-28192437 Msa1284900:CDS 45.0%
TTATGCAGAAACTGTGGGGA+AGG + chr8_3:28192506-28192525 Msa1284900:CDS 45.0%
!! GTTGAGATGGTGAGCATCGA+CGG - chr8_3:28191456-28191475 None:intergenic 50.0%
TTGTTCGACGGAGATTGCGA+CGG - chr8_3:28191732-28191751 None:intergenic 50.0%
! GATTGTGTCTGGTTTCACGG+TGG - chr8_3:28191790-28191809 None:intergenic 50.0%
!!! CGATGTCGGTGTTTTGATGG+TGG - chr8_3:28191914-28191933 None:intergenic 50.0%
! AACAACAACAACGGTGACGG+CGG + chr8_3:28192326-28192345 Msa1284900:CDS 50.0%
GTGGCGTAGGGTAGTAATGA+CGG + chr8_3:28192430-28192449 Msa1284900:CDS 50.0%
AGTAATGACGGCGCAGGATA+AGG + chr8_3:28192442-28192461 Msa1284900:CDS 50.0%
GTGTTCAATGTGTGGGGCTA+TGG + chr8_3:28192571-28192590 Msa1284900:CDS 50.0%
!! GTTGAGATGGTGAGCATCGA+CGG - chr8_3:28191456-28191475 None:intergenic 50.0%
TTGTTCGACGGAGATTGCGA+CGG - chr8_3:28191732-28191751 None:intergenic 50.0%
! GATTGTGTCTGGTTTCACGG+TGG - chr8_3:28191790-28191809 None:intergenic 50.0%
!!! CGATGTCGGTGTTTTGATGG+TGG - chr8_3:28191914-28191933 None:intergenic 50.0%
! AACAACAACAACGGTGACGG+CGG + chr8_3:28192326-28192345 Msa1284900:CDS 50.0%
GTGGCGTAGGGTAGTAATGA+CGG + chr8_3:28192430-28192449 Msa1284900:CDS 50.0%
AGTAATGACGGCGCAGGATA+AGG + chr8_3:28192442-28192461 Msa1284900:CDS 50.0%
GTGTTCAATGTGTGGGGCTA+TGG + chr8_3:28192571-28192590 Msa1284900:CDS 50.0%
ACGGTGGTTGTGCCTGAAAG+TGG - chr8_3:28191693-28191712 None:intergenic 55.0%
TTCAGGCACAACCACCGTGT+CGG + chr8_3:28191695-28191714 Msa1284900:CDS 55.0%
! GGTGACGGCGGTGAATATAG+CGG + chr8_3:28192338-28192357 Msa1284900:CDS 55.0%
TAGGGTAGTAATGACGGCGC+AGG + chr8_3:28192436-28192455 Msa1284900:CDS 55.0%
ACGGCGCAGGATAAGGATGA+AGG + chr8_3:28192449-28192468 Msa1284900:CDS 55.0%
ACGGTGGTTGTGCCTGAAAG+TGG - chr8_3:28191693-28191712 None:intergenic 55.0%
TTCAGGCACAACCACCGTGT+CGG + chr8_3:28191695-28191714 Msa1284900:CDS 55.0%
! GGTGACGGCGGTGAATATAG+CGG + chr8_3:28192338-28192357 Msa1284900:CDS 55.0%
TAGGGTAGTAATGACGGCGC+AGG + chr8_3:28192436-28192455 Msa1284900:CDS 55.0%
ACGGCGCAGGATAAGGATGA+AGG + chr8_3:28192449-28192468 Msa1284900:CDS 55.0%
GACGGCGGTGAATATAGCGG+TGG + chr8_3:28192341-28192360 Msa1284900:CDS 60.0%
GGCGGTGAATATAGCGGTGG+CGG + chr8_3:28192344-28192363 Msa1284900:CDS 60.0%
AGATTTCGCCGTTGCCGTGG+CGG + chr8_3:28192367-28192386 Msa1284900:CDS 60.0%
GACGGCGGTGAATATAGCGG+TGG + chr8_3:28192341-28192360 Msa1284900:CDS 60.0%
GGCGGTGAATATAGCGGTGG+CGG + chr8_3:28192344-28192363 Msa1284900:CDS 60.0%
AGATTTCGCCGTTGCCGTGG+CGG + chr8_3:28192367-28192386 Msa1284900:CDS 60.0%
CGGAGATTTCGCCGTTGCCG+TGG + chr8_3:28192364-28192383 Msa1284900:CDS 65.0%
AGCATCCTCCGCCACGGCAA+CGG - chr8_3:28192378-28192397 None:intergenic 65.0%
GGACTCAGCATCCTCCGCCA+CGG - chr8_3:28192384-28192403 None:intergenic 65.0%
CGGAGATTTCGCCGTTGCCG+TGG + chr8_3:28192364-28192383 Msa1284900:CDS 65.0%
AGCATCCTCCGCCACGGCAA+CGG - chr8_3:28192378-28192397 None:intergenic 65.0%
GGACTCAGCATCCTCCGCCA+CGG - chr8_3:28192384-28192403 None:intergenic 65.0%
TTTCGCCGTTGCCGTGGCGG+AGG + chr8_3:28192370-28192389 Msa1284900:CDS 70.0%
TTTCGCCGTTGCCGTGGCGG+AGG + chr8_3:28192370-28192389 Msa1284900:CDS 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 28191195 28192848 28191195 ID=Msa1284900;Name=Msa1284900
chr8_3 mRNA 28191195 28192848 28191195 ID=Msa1284900-mRNA-1;Parent=Msa1284900;Name=Msa1284900-mRNA-1;_AED=0.00;_eAED=0.00;_QI=254|1|1|1|1|1|3|193|330
chr8_3 exon 28191195 28191504 28191195 ID=Msa1284900-mRNA-1:exon:9533;Parent=Msa1284900-mRNA-1
chr8_3 exon 28191614 28191953 28191614 ID=Msa1284900-mRNA-1:exon:9534;Parent=Msa1284900-mRNA-1
chr8_3 exon 28192059 28192848 28192059 ID=Msa1284900-mRNA-1:exon:9535;Parent=Msa1284900-mRNA-1
chr8_3 five_prime_UTR 28191195 28191448 28191195 ID=Msa1284900-mRNA-1:five_prime_utr;Parent=Msa1284900-mRNA-1
chr8_3 CDS 28191449 28191504 28191449 ID=Msa1284900-mRNA-1:cds;Parent=Msa1284900-mRNA-1
chr8_3 CDS 28191614 28191953 28191614 ID=Msa1284900-mRNA-1:cds;Parent=Msa1284900-mRNA-1
chr8_3 CDS 28192059 28192655 28192059 ID=Msa1284900-mRNA-1:cds;Parent=Msa1284900-mRNA-1
chr8_3 three_prime_UTR 28192656 28192848 28192656 ID=Msa1284900-mRNA-1:three_prime_utr;Parent=Msa1284900-mRNA-1
Gene Sequence

>Msa1284900

ATGACCGTCGATGCTCACCATCTCAACCTTTTTCCTTCTCAACTTCAACCCAATAGAGACATGATGATGATGATGATGAACACGACCGACACAAATTATACAAACATGTACAACAACTACTCATCACTGTTACCACTTTCAGGCACAACCACCGTGTCGGAAAATCTCATTCCGTCGCAATCTCCGTCGAACAACCCTTTCATAACCGATTTCCTCCGTCAAAAAATATCCACCGTGAAACCAGACACAATCTTTGCTTACAACAATAACAACAACGTTGTCTCGTTCCCACAAAAACGTTCTAGAGATTCCATTAACTACCCTTTCATCAGTGAAGATTTTTCTCATTACATCCACCATCAAAACACCGACATCGACAACTTCATTTCTCAACATACGGAGAAGTTTAGAGTGGAATTAGAAGAGAAAAGAAAGAGAGAAACAATGATGATAATGGAAGCAATAGAAAACGAAGTGATGAAGAAAATGAAAGCAAAAGAAGAAGAAATCCAAAAAATTGAAAGAATGAACATGATTCTTGAAGAAAAAGTGAAAACACTATGCATGGAGAATCAAATCTGGAGAGAGTTAGCACAAAACAATGAAGCAACAGCAAATGCTCTTAGAAACAATCTACAACAAATCCTTATGCAACAAATGCAAAACAACAACAACGGTGACGGCGGTGAATATAGCGGTGGCGGAGATTTCGCCGTTGCCGTGGCGGAGGATGCTGAGTCCTGTTGTAGTAATGATGAATATTGTGGGTGGCGTAGGGTAGTAATGACGGCGCAGGATAAGGATGAAGGTACTAGTAGTGGTAGAGTGATGAATAATAATAGATTATGCAGAAACTGTGGGGAAGGTGAATCTTGTGTTTTGATCATGCCTTGTAGACACTTATGTTTGTGTTCAATGTGTGGGGCTATGGTTCTTACTTGTCCTATATGTGATTCTGTTAAATCTGCTACTCTTAATGTTAATCTTGATTAA

Protein sequence

>Msa1284900

MTVDAHHLNLFPSQLQPNRDMMMMMMNTTDTNYTNMYNNYSSLLPLSGTTTVSENLIPSQSPSNNPFITDFLRQKISTVKPDTIFAYNNNNNVVSFPQKRSRDSINYPFISEDFSHYIHHQNTDIDNFISQHTEKFRVELEEKRKRETMMIMEAIENEVMKKMKAKEEEIQKIERMNMILEEKVKTLCMENQIWRELAQNNEATANALRNNLQQILMQQMQNNNNGDGGEYSGGGDFAVAVAEDAESCCSNDEYCGWRRVVMTAQDKDEGTSSGRVMNNNRLCRNCGEGESCVLIMPCRHLCLCSMCGAMVLTCPICDSVKSATLNVNLD*