AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0656000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0656000 MtrunA17_Chr8g0376151 95.967 967 31 2 1 967 1 959 0.0 1896
Msa0656000 MtrunA17_Chr5g0434681 47.808 479 195 17 511 962 519 969 8.33e-94 319
Msa0656000 MtrunA17_Chr1g0184441 30.864 405 233 9 569 960 496 866 9.22e-35 143
Msa0656000 MtrunA17_Chr1g0184441 36.000 150 79 6 21 160 24 166 3.21e-20 96.7
Msa0656000 MtrunA17_Chr7g0274311 39.773 264 126 7 543 792 481 725 3.89e-32 135
Msa0656000 MtrunA17_Chr7g0274311 46.875 96 50 1 15 110 20 114 8.09e-23 105
Msa0656000 MtrunA17_Chr3g0093241 48.592 142 71 1 562 703 290 429 1.48e-22 102
Msa0656000 MtrunA17_Chr3g0093241 30.769 182 94 4 1 160 1 172 1.17e-19 93.6
Msa0656000 MtrunA17_Chr4g0059771 32.571 175 104 4 1 163 1 173 2.26e-22 102
Msa0656000 MtrunA17_Chr4g0059771 49.306 144 70 3 560 703 287 427 3.01e-15 79.7
Msa0656000 MtrunA17_Chr7g0268041 44.231 104 58 0 608 711 70 173 3.51e-17 85.9
Msa0656000 MtrunA17_Chr4g0003901 50.515 97 48 0 608 704 289 385 4.17e-16 82.4
Msa0656000 MtrunA17_Chr4g0003911 50.000 92 46 0 611 702 280 371 6.11e-16 82.4
Msa0656000 MtrunA17_Chr4g0049631 38.000 100 62 0 608 707 303 402 1.43e-14 77.4
Msa0656000 MtrunA17_Chr2g0307041 37.864 103 64 0 602 704 13 115 8.67e-14 74.3
Msa0656000 MtrunA17_Chr1g0176391 39.423 104 63 0 608 711 65 168 2.37e-12 70.5
Msa0656000 MtrunA17_Chr2g0279771 33.974 156 93 4 558 707 84 235 5.44e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0656000 AT1G70750.1 40.828 676 238 27 307 967 221 749 4.32e-102 336
Msa0656000 AT1G70750.1 59.794 97 38 1 1 96 1 97 2.40e-31 132
Msa0656000 AT5G16720.1 43.765 409 164 11 560 957 310 663 6.38e-77 266
Msa0656000 AT5G16720.1 50.442 113 55 1 1 112 1 113 1.17e-33 139
Msa0656000 AT2G30690.1 57.724 123 50 2 593 715 602 722 6.15e-29 124
Msa0656000 AT2G30690.1 38.235 102 55 2 15 115 13 107 2.97e-16 84.3
Msa0656000 AT2G30690.2 57.724 123 50 2 593 715 602 722 6.15e-29 124
Msa0656000 AT2G30690.2 38.235 102 55 2 15 115 13 107 2.97e-16 84.3
Msa0656000 AT1G08800.2 41.423 239 123 6 572 804 862 1089 1.19e-28 124
Msa0656000 AT1G08800.2 41.748 103 59 1 14 115 3 105 4.21e-21 100
Msa0656000 AT1G08800.4 41.423 239 123 6 572 804 862 1089 1.19e-28 124
Msa0656000 AT1G08800.4 41.748 103 59 1 14 115 3 105 4.21e-21 100
Msa0656000 AT1G08800.3 41.423 239 123 6 572 804 862 1089 1.19e-28 124
Msa0656000 AT1G08800.3 41.748 103 59 1 14 115 3 105 4.21e-21 100
Msa0656000 AT1G08800.1 41.423 239 123 6 572 804 862 1089 1.19e-28 124
Msa0656000 AT1G08800.1 41.748 103 59 1 14 115 3 105 4.21e-21 100
Msa0656000 AT1G74830.1 62.136 103 39 0 601 703 298 400 3.81e-26 114
Msa0656000 AT1G74830.1 33.043 115 77 0 1 115 20 134 2.28e-18 90.5
Msa0656000 AT1G18990.1 64.356 101 36 0 601 701 297 397 1.22e-23 106
Msa0656000 AT1G18990.1 35.652 115 74 0 1 115 1 115 7.31e-12 69.7
Msa0656000 AT4G13630.2 47.541 122 59 1 592 708 204 325 1.75e-20 97.1
Msa0656000 AT4G13630.1 47.541 122 59 1 592 708 204 325 1.75e-20 97.1
Msa0656000 AT3G54740.8 37.430 179 95 4 582 748 5 178 5.18e-19 90.9
Msa0656000 AT3G54740.1 37.430 179 95 4 582 748 5 178 5.18e-19 90.9
Msa0656000 AT3G54740.7 37.430 179 95 4 582 748 5 178 5.18e-19 90.9
Msa0656000 AT3G54740.4 37.430 179 95 4 582 748 5 178 5.18e-19 90.9
Msa0656000 AT3G54740.3 37.430 179 95 4 582 748 53 226 5.76e-19 91.3
Msa0656000 AT3G54740.6 37.430 179 95 4 582 748 53 226 5.76e-19 91.3
Msa0656000 AT3G54740.2 37.430 179 95 4 582 748 53 226 5.76e-19 91.3
Msa0656000 AT3G54740.5 37.430 179 95 4 582 748 53 226 5.76e-19 91.3
Msa0656000 AT1G04890.1 49.123 114 56 1 589 702 97 208 6.97e-18 87.8
Msa0656000 AT5G06560.1 38.710 124 69 1 605 721 71 194 2.84e-16 83.6
Msa0656000 AT4G13160.1 54.255 94 43 0 608 701 117 210 2.92e-16 80.9
Msa0656000 AT4G30830.1 41.237 97 57 0 608 704 18 114 8.33e-12 68.6
Msa0656000 AT4G30830.2 41.237 97 57 0 608 704 18 114 8.33e-12 68.6

Find 180 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATCATTCTATGAACATTT+TGG 0.131796 4_3:+65025480 Msa0656000:CDS
ATAAAGTTTGCTGATTATTT+TGG 0.145806 4_3:+65025085 Msa0656000:CDS
GGTGGTGGAGGAAGGGTTTA+AGG 0.150734 4_3:+65026008 Msa0656000:CDS
ATTGAGAATTGGCACATTTC+TGG 0.155393 4_3:+65026090 Msa0656000:CDS
TGAGAAAGTTTGACATAATT+TGG 0.160478 4_3:-65025304 None:intergenic
TTTATTAGAGAGACAGAATT+AGG 0.167811 4_3:+65028992 Msa0656000:three_prime_UTR
CATGATTACCTTTATGAAAA+AGG 0.209302 4_3:+65028825 Msa0656000:three_prime_UTR
GATTTCCAAGGTCATGTAAA+TGG 0.210463 4_3:+65027801 Msa0656000:CDS
ATGTGCCAATTCTCAATTAA+TGG 0.212111 4_3:-65026084 None:intergenic
CTTCAACATTATCATGCTTA+TGG 0.213927 4_3:-65026230 None:intergenic
TGCTGTTGAGATTTCCAAAT+TGG 0.222106 4_3:+65025204 Msa0656000:CDS
GAATCCACTGCCACAGAAAA+TGG 0.228593 4_3:+65025964 Msa0656000:CDS
ATTGGAACAGAAAACCAATT+TGG 0.241967 4_3:-65025218 None:intergenic
TAACCATATGCCTTCATCTT+TGG 0.254980 4_3:+65026936 Msa0656000:CDS
TGTAGATGCTGTGTTATATT+TGG 0.255018 4_3:+65027590 Msa0656000:CDS
TTCAGCTGAAAAGACCAATT+TGG 0.270275 4_3:+65027980 Msa0656000:CDS
GATCTTTACAAGCTTGAATT+TGG 0.276454 4_3:+65025754 Msa0656000:CDS
AAGATGTCAAAACTGTATTT+TGG 0.282209 4_3:-65024852 None:intergenic
AGGATTCTCCCTTCTCCATT+AGG 0.301247 4_3:-65028684 None:intergenic
GACCAATTTGGATAACAAAA+AGG 0.301928 4_3:+65027992 Msa0656000:CDS
TTTGAGGTTGAACATGATTC+AGG 0.302213 4_3:+65025658 Msa0656000:CDS
TCATTGGATGGAAGTGTAAT+AGG 0.334923 4_3:+65027075 Msa0656000:CDS
AATCATTGCCATTGTTTGAT+TGG 0.338660 4_3:-65027220 None:intergenic
AAACAATGGCAATGATTAAC+AGG 0.343697 4_3:+65027226 Msa0656000:CDS
GGATTCTCCCTTCTCCATTA+GGG 0.354187 4_3:-65028683 None:intergenic
AAGGAAATAGATATGATTAA+TGG 0.355425 4_3:+65025352 Msa0656000:CDS
TTATGAGAGACTACAAGTTT+TGG 0.357126 4_3:+65028043 Msa0656000:CDS
CAAGAATCAAAAGAAGAAAA+TGG 0.358623 4_3:+65027543 Msa0656000:CDS
TTCAGCTAGTTTGTGATGAT+TGG 0.359303 4_3:-65025236 None:intergenic
GGATTATCAGAATCCATTCT+AGG 0.360955 4_3:-65025027 None:intergenic
TCTCTCCAGCTTTGCAAGCC+AGG 0.366648 4_3:-65028928 None:intergenic
TGATCATCATCCTGAGCCTT+TGG 0.368054 4_3:-65025829 None:intergenic
TAAGACCTGGCTTGCAAAGC+TGG 0.370214 4_3:+65028923 Msa0656000:three_prime_UTR
TCATTGAGAAAAGGGGATAA+AGG 0.370415 4_3:+65028101 Msa0656000:CDS
CCAATTCTCAATTAATGGTT+CGG 0.375649 4_3:-65026079 None:intergenic
CAGTTTGATTCCTGTTGAAT+TGG 0.375927 4_3:+65025939 Msa0656000:CDS
CCGAACCATTAATTGAGAAT+TGG 0.389801 4_3:+65026079 Msa0656000:CDS
CTTGAATTTGGTGTAAAGAA+AGG 0.400903 4_3:+65025766 Msa0656000:CDS
TCATCCATTTGTTCATGATC+AGG 0.416480 4_3:-65026494 None:intergenic
AAAGAGAATTTAGAAGAAGA+AGG 0.420703 4_3:-65025048 None:intergenic
GCAAACTTCTCATGTGTGCT+TGG 0.422121 4_3:-65028579 None:intergenic
TATGAAGCAGAAGTATCAAT+TGG 0.425288 4_3:+65026461 Msa0656000:CDS
CAGCATCTACAGGAGTGTTC+TGG 0.425690 4_3:-65027578 None:intergenic
TCCGGAGAAGTCGGTGTGTC+GGG 0.425794 4_3:-65026988 None:intergenic
TCAAGGCCAGGATATTCTTT+CGG 0.427039 4_3:+65026520 Msa0656000:CDS
TGATGGTGTCAAGGAAACTA+TGG 0.430020 4_3:+65025726 Msa0656000:CDS
AGACAATGGGAGATCCCTAA+TGG 0.430134 4_3:+65028669 Msa0656000:three_prime_UTR
AAATTCTATGCACCTGGCAC+TGG 0.431551 4_3:-65028967 None:intergenic
TTATTAGAGAGACAGAATTA+GGG 0.432654 4_3:+65028993 Msa0656000:three_prime_UTR
CATTGAGAAAAGGGGATAAA+GGG 0.434221 4_3:+65028102 Msa0656000:CDS
TACAACATCTACGTGATTTG+AGG 0.434349 4_3:+65028147 Msa0656000:CDS
CAAATCCATTTACATGACCT+TGG 0.434429 4_3:-65027806 None:intergenic
TTGAATTTGGTGTAAAGAAA+GGG 0.435192 4_3:+65025767 Msa0656000:CDS
TGCAAACTTGTTGGCAGCCA+TGG 0.435469 4_3:-65024951 None:intergenic
AACATCTTCGTGAAGAGAAC+GGG 0.438917 4_3:+65027742 Msa0656000:CDS
GTATCAGCTCATTGAGAAAA+GGG 0.444188 4_3:+65028093 Msa0656000:CDS
TGTGATAAGGTGGTGGAGGA+AGG 0.445212 4_3:+65026000 Msa0656000:CDS
CTAGGTTCATATGTTTCTCT+AGG 0.445875 4_3:+65026294 Msa0656000:CDS
TAGTTTATGCAATCCTAGAA+TGG 0.449778 4_3:+65025014 Msa0656000:CDS
GTCAGGAACAGAAGATTCAT+TGG 0.455379 4_3:+65027059 Msa0656000:CDS
GGGAATTGAGAAAGTTGAAG+AGG 0.456395 4_3:+65025387 Msa0656000:CDS
GGTTGGTTTAGAAGAGGAGG+TGG 0.457431 4_3:+65028013 Msa0656000:CDS
GTGGATTCAACCAATTCAAC+AGG 0.460558 4_3:-65025949 None:intergenic
CATGTAAATGGATTTGCAAA+TGG 0.462247 4_3:+65027813 Msa0656000:CDS
ACTCAACTCTACATCTTCTT+CGG 0.465186 4_3:-65027916 None:intergenic
TTGTATTATTGCATCCTATG+AGG 0.473752 4_3:+65029096 Msa0656000:three_prime_UTR
AGGCTTACCACTATCATGTT+GGG 0.473913 4_3:-65026597 None:intergenic
AATGGATTTGCAAATGGTAA+TGG 0.475509 4_3:+65027819 Msa0656000:CDS
TGTATCAGCTCATTGAGAAA+AGG 0.475886 4_3:+65028092 Msa0656000:CDS
CATAGCCTCTTGATCGTACT+CGG 0.476563 4_3:-65027316 None:intergenic
ATATCTATTTCCTTCATCCA+TGG 0.485123 4_3:-65025343 None:intergenic
GCTCCAAAGATGAAGGCATA+TGG 0.485262 4_3:-65026939 None:intergenic
TCTCAAAGTTTCCTCTTCCA+AGG 0.486049 4_3:-65025797 None:intergenic
AATTCCTGATCATGAACAAA+TGG 0.488142 4_3:+65026490 Msa0656000:CDS
ACTAGAACAGCTGAAAGTAT+TGG 0.499006 4_3:+65027653 Msa0656000:CDS
GAATGATCTTATATTGAAGA+GGG 0.501695 4_3:+65027347 Msa0656000:CDS
CATTCTTAATTCAAGTGACA+TGG 0.503402 4_3:-65026902 None:intergenic
TGTGCTTGTTCTGTTTGTGA+TGG 0.503760 4_3:+65025709 Msa0656000:CDS
TGAGGTAAGAGTGAAGTTTG+AGG 0.504722 4_3:+65029051 Msa0656000:three_prime_UTR
TGGAATTCATATGTTGTTTG+AGG 0.507732 4_3:+65025642 Msa0656000:CDS
GGAATTGAGAAAGTTGAAGA+GGG 0.509648 4_3:+65025388 Msa0656000:CDS
AACATGGAAAGAATGATGAA+TGG 0.512778 4_3:+65026255 Msa0656000:CDS
TGATTCAACCTCATTGACCT+TGG 0.513718 4_3:-65026157 None:intergenic
TAATACAAAAGATGAGAAAG+AGG 0.515140 4_3:-65029081 None:intergenic
GAACAAATGGATGAGTATCA+AGG 0.515576 4_3:+65026503 Msa0656000:CDS
AAATCAAAATAGATGTGATA+AGG 0.515683 4_3:+65025987 Msa0656000:CDS
ATTCATCCACTAGCTCAGTC+AGG 0.516946 4_3:+65026567 Msa0656000:CDS
TTTAATGCCCAACATGATAG+TGG 0.517123 4_3:+65026590 Msa0656000:CDS
TTTCTCGAGAGGAAAGGGTC+AGG 0.520344 4_3:+65027042 Msa0656000:CDS
GGCATATGGTTACTTGCTGT+TGG 0.523409 4_3:-65026925 None:intergenic
GAGGCTTACCACTATCATGT+TGG 0.523454 4_3:-65026598 None:intergenic
AAATATAACACAGCATCTAC+AGG 0.525131 4_3:-65027588 None:intergenic
TTTGAGATTGAATGTTCCAA+AGG 0.527554 4_3:+65025813 Msa0656000:CDS
TAGATGTGATAAGGTGGTGG+AGG 0.527709 4_3:+65025996 Msa0656000:CDS
ATTGAATGTTCCAAAGGCTC+AGG 0.527773 4_3:+65025819 Msa0656000:CDS
AGGGAATGAAACCTTGGAAG+AGG 0.530134 4_3:+65025786 Msa0656000:CDS
ATTAATGGTGCTGATGGAAA+GGG 0.530637 4_3:+65025367 Msa0656000:CDS
TCCCGACACACCGACTTCTC+CGG 0.530703 4_3:+65026987 Msa0656000:CDS
TGTAGTTGATGAAGACTCTC+CGG 0.531114 4_3:-65027006 None:intergenic
CTTCGTGAAGAGAACGGGAA+TGG 0.531529 4_3:+65027747 Msa0656000:CDS
GGAATGTGGAACTCAGAGTC+AGG 0.532375 4_3:+65028168 Msa0656000:CDS
AATTCTTGCACACCACATGC+AGG 0.534692 4_3:-65025119 None:intergenic
CTCCGGAGAAGTCGGTGTGT+CGG 0.535211 4_3:-65026989 None:intergenic
CGCATTGAAATCTGAAAGGA+AGG 0.536176 4_3:+65027140 Msa0656000:CDS
TTCTGTTTGTGATGGTGTCA+AGG 0.536392 4_3:+65025717 Msa0656000:CDS
GATATGATTAATGGTGCTGA+TGG 0.537087 4_3:+65025361 Msa0656000:CDS
TAACATGGTTGCAAACTTGT+TGG 0.542372 4_3:-65024960 None:intergenic
GATGAGCATATGTGTGTGTA+GGG 0.544532 4_3:+65028853 Msa0656000:three_prime_UTR
TGGGAGATCCCTAATGGAGA+AGG 0.545330 4_3:+65028675 Msa0656000:three_prime_UTR
TCCTCAGCGTTGCTACAAGA+AGG 0.546661 4_3:-65027492 None:intergenic
GTGATAAGGTGGTGGAGGAA+GGG 0.547154 4_3:+65026001 Msa0656000:CDS
GTTGGTGTTTCTGTGTAACA+TGG 0.547580 4_3:-65024975 None:intergenic
TCAAAATAGATGTGATAAGG+TGG 0.548904 4_3:+65025990 Msa0656000:CDS
GGAACAGAAGATTCATTGGA+TGG 0.549334 4_3:+65027063 Msa0656000:CDS
GATTAATGGTGCTGATGGAA+AGG 0.550398 4_3:+65025366 Msa0656000:CDS
TGTGCTTGGTTTGCAGCATG+TGG 0.550622 4_3:-65028565 None:intergenic
AATGGATGAGTATCAAGGCC+AGG 0.550806 4_3:+65026508 Msa0656000:CDS
ATGTGGTGACGTGACCTTCG+AGG 0.551592 4_3:+65027107 Msa0656000:CDS
TGAATGATCTTATATTGAAG+AGG 0.551934 4_3:+65027346 Msa0656000:CDS
AGAGAAAGCAGCAATGCAGA+TGG 0.554976 4_3:+65027257 Msa0656000:CDS
GAACATCTTCGTGAAGAGAA+CGG 0.557301 4_3:+65027741 Msa0656000:CDS
TCATTAAGCTCCAAAGATGA+AGG 0.560251 4_3:-65026946 None:intergenic
GAACTCAGAGTCAGGAACAT+AGG 0.561039 4_3:+65028176 Msa0656000:CDS
AAATAGATGTGATAAGGTGG+TGG 0.561586 4_3:+65025993 Msa0656000:CDS
ATATTGAATTATGAAGATGA+AGG 0.565833 4_3:+65027690 Msa0656000:CDS
ATAAAATACAAGTGACAGCA+TGG 0.571800 4_3:-65028892 None:intergenic
GGAGCTTAATGAGAATGAAG+AGG 0.572531 4_3:+65026957 Msa0656000:CDS
AAAGAAAGGGAATGAAACCT+TGG 0.573374 4_3:+65025780 Msa0656000:CDS
TGTATATATGTATACTGCAT+TGG 0.573947 4_3:-65028603 None:intergenic
AAAGGTTGGTTTAGAAGAGG+AGG 0.574199 4_3:+65028010 Msa0656000:CDS
ATCAAACAGATCATGCTACA+AGG 0.576586 4_3:-65028704 None:intergenic
AAGCAGAACATGATCAAAGA+AGG 0.576841 4_3:+65025523 Msa0656000:CDS
AACTCTACCAAAGATATGAC+AGG 0.577897 4_3:+65028230 Msa0656000:three_prime_UTR
TCATCAAGGAAGGAAAGTCT+TGG 0.580300 4_3:+65027848 Msa0656000:CDS
GAATGATCAATAACAATGCA+AGG 0.581504 4_3:-65025466 None:intergenic
AGATGCTGTGTTATATTTGG+AGG 0.584225 4_3:+65027593 Msa0656000:CDS
TTGTATCCGAAAGAATATCC+TGG 0.587704 4_3:-65026526 None:intergenic
GGTAATGGAAAGCATCATCA+AGG 0.588406 4_3:+65027834 Msa0656000:CDS
GCACATTTCTGGTGATATTG+TGG 0.590921 4_3:+65026101 Msa0656000:CDS
TAAACAAAATTCTATGCACC+TGG 0.591855 4_3:-65028973 None:intergenic
ATGGAAAGCATCATCAAGGA+AGG 0.594579 4_3:+65027838 Msa0656000:CDS
GATCAATAACAATGCAAGGA+GGG 0.594685 4_3:-65025462 None:intergenic
TGATGAGCATATGTGTGTGT+AGG 0.596077 4_3:+65028852 Msa0656000:three_prime_UTR
GAAGAAGATGTAGAGTTGAG+TGG 0.596653 4_3:+65027918 Msa0656000:CDS
TGAAGACTCTCCGGAGAAGT+CGG 0.598220 4_3:-65026997 None:intergenic
GGTTTGAGATGTTCTTGCTG+TGG 0.598600 4_3:+65025409 Msa0656000:CDS
TGATAATGTTGAAGTAAACA+TGG 0.598835 4_3:+65026239 Msa0656000:CDS
AAACAGAGCATCTTCAACCA+TGG 0.601767 4_3:+65024934 Msa0656000:exon
GACGATCATGATGATTTCCA+AGG 0.606183 4_3:+65027789 Msa0656000:CDS
GGGAGATCCCTAATGGAGAA+GGG 0.609817 4_3:+65028676 Msa0656000:three_prime_UTR
TCTACGTGATTTGAGGAATG+TGG 0.613878 4_3:+65028154 Msa0656000:CDS
AGCAACGCTGAGGATAGTGA+TGG 0.616923 4_3:+65027501 Msa0656000:CDS
ATTAAACCTGACTGAGCTAG+TGG 0.618410 4_3:-65026573 None:intergenic
ACAATCCGAGTACGATCAAG+AGG 0.619408 4_3:+65027311 Msa0656000:CDS
AATCCGCATTGAAATCTGAA+AGG 0.619756 4_3:+65027136 Msa0656000:CDS
TTTGCAGTATCAGAGAATGA+TGG 0.624136 4_3:+65027284 Msa0656000:CDS
AAATGTGTCCAAGGTCAATG+AGG 0.633487 4_3:+65026149 Msa0656000:CDS
GATGATGCATCACAAACTCA+AGG 0.634789 4_3:+65026428 Msa0656000:CDS
ATTCTTGCACACCACATGCA+GGG 0.636899 4_3:-65025118 None:intergenic
GATTGCATAAACTAGAACAA+GGG 0.638161 4_3:-65025005 None:intergenic
ATCACAAACTCAAGGTGAGG+AGG 0.642622 4_3:+65026436 Msa0656000:CDS
CAGGAACATAGGAGATCTTG+CGG 0.643584 4_3:+65028187 Msa0656000:CDS
TATCAGCTCATTGAGAAAAG+GGG 0.648271 4_3:+65028094 Msa0656000:CDS
GGATTGCATAAACTAGAACA+AGG 0.648751 4_3:-65025006 None:intergenic
TCCTTCTTGTAGCAACGCTG+AGG 0.650250 4_3:+65027491 Msa0656000:CDS
TGCATCACAAACTCAAGGTG+AGG 0.653414 4_3:+65026433 Msa0656000:CDS
TCACACACAAGATCTCTACA+AGG 0.661299 4_3:-65025175 None:intergenic
GTAATAGGCGACATAGAATG+TGG 0.664054 4_3:+65027090 Msa0656000:CDS
CAAAACATTGAAGAAAACAG+TGG 0.667489 4_3:+65025622 Msa0656000:CDS
ATCTGTTTGATACAATGTGG+TGG 0.667568 4_3:+65028716 Msa0656000:three_prime_UTR
TTTATGAGGAAATTAAGACC+TGG 0.671431 4_3:+65028910 Msa0656000:three_prime_UTR
GCCTGAAAAGACCCTGCATG+TGG 0.674969 4_3:+65025107 Msa0656000:CDS
TGATCAATAACAATGCAAGG+AGG 0.675124 4_3:-65025463 None:intergenic
TCTTGGCTACTAAAGCAAAG+AGG 0.677057 4_3:+65027865 Msa0656000:CDS
TGTAGCAGCCAATCAAACAA+TGG 0.682068 4_3:+65027212 Msa0656000:CDS
TGTTGAAGTTGAGAAAACTG+AGG 0.695566 4_3:+65025870 Msa0656000:CDS
CTTCCTTTCAGATTTCAATG+CGG 0.713730 4_3:-65027139 None:intergenic
GCAACGCTGAGGATAGTGAT+GGG 0.723560 4_3:+65027502 Msa0656000:CDS
TGAATCAGATGATATGTGTG+AGG 0.729118 4_3:+65025255 Msa0656000:CDS
ATGATCTGTTTGATACAATG+TGG 0.760641 4_3:+65028713 Msa0656000:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTACATTATTTTTTTG+AGG + chr4_3:65029033-65029052 Msa0656000:three_prime_UTR 10.0%
!! ACAATAATATATAAAATGAG+TGG - chr4_3:65026347-65026366 None:intergenic 15.0%
!!! AATTTTTTTTCTTCGAAAAA+TGG - chr4_3:65028411-65028430 None:intergenic 15.0%
!!! GTCTTTTTTTTTCTTAAAAT+TGG - chr4_3:65028653-65028672 None:intergenic 15.0%
!! TTTAAGAAAAAAAAAGACAA+TGG + chr4_3:65028655-65028674 Msa0656000:three_prime_UTR 15.0%
!! TTAAGAAAAAAAAAGACAAT+GGG + chr4_3:65028656-65028675 Msa0656000:three_prime_UTR 15.0%
!! ATGAAACAAAAAATATCAAA+AGG - chr4_3:65028761-65028780 None:intergenic 15.0%
!! GTACAAAAGAAAAAAGAAAA+AGG - chr4_3:65024896-65024915 None:intergenic 20.0%
!!! ATAAAGTTTGCTGATTATTT+TGG + chr4_3:65025085-65025104 Msa0656000:CDS 20.0%
!! AAGGAAATAGATATGATTAA+TGG + chr4_3:65025352-65025371 Msa0656000:CDS 20.0%
!! ATGAAAAATTCAAGATGTTT+AGG - chr4_3:65025904-65025923 None:intergenic 20.0%
!! AAATCAAAATAGATGTGATA+AGG + chr4_3:65025987-65026006 Msa0656000:CDS 20.0%
!! AAAATTTGCAATGTGTAATT+AGG + chr4_3:65026841-65026860 Msa0656000:intron 20.0%
!! ATATTGAATTATGAAGATGA+AGG + chr4_3:65027690-65027709 Msa0656000:CDS 20.0%
!! TCTAGTACATATAAAAAAGT+TGG - chr4_3:65028266-65028285 None:intergenic 20.0%
!! AAAAAAAATGACAAAACTAG+TGG - chr4_3:65029019-65029038 None:intergenic 20.0%
!! AAGATGTCAAAACTGTATTT+TGG - chr4_3:65024855-65024874 None:intergenic 25.0%
! AAAGAGAATTTAGAAGAAGA+AGG - chr4_3:65025051-65025070 None:intergenic 25.0%
! TGAGAAAGTTTGACATAATT+TGG - chr4_3:65025307-65025326 None:intergenic 25.0%
!! AAAGTTTAGATGTTTTTCCA+TGG + chr4_3:65025326-65025345 Msa0656000:CDS 25.0%
!! TGATCATTCTATGAACATTT+TGG + chr4_3:65025480-65025499 Msa0656000:CDS 25.0%
!!! TTGAATTTGGTGTAAAGAAA+GGG + chr4_3:65025767-65025786 Msa0656000:CDS 25.0%
! AAAAATTCAAGATGTTTAGG+TGG - chr4_3:65025901-65025920 None:intergenic 25.0%
!! CATCTTGAATTTTTCATTCA+TGG + chr4_3:65025907-65025926 Msa0656000:CDS 25.0%
!!! ATTTTGATTTCCATTTTCTG+TGG - chr4_3:65025977-65025996 None:intergenic 25.0%
!! GAAGATTTTATTCTGGATTT+TGG + chr4_3:65026036-65026055 Msa0656000:CDS 25.0%
!!! AATTGAATTTTCAAGATGTG+AGG + chr4_3:65026184-65026203 Msa0656000:CDS 25.0%
!! TGATAATGTTGAAGTAAACA+TGG + chr4_3:65026239-65026258 Msa0656000:CDS 25.0%
!!! ATGATGAATGGATATTTTGA+TGG + chr4_3:65026267-65026286 Msa0656000:CDS 25.0%
! AAAAGGAAGACAATAAATTG+AGG - chr4_3:65026620-65026639 None:intergenic 25.0%
! TACATTTGCCAACATTATAA+AGG - chr4_3:65026696-65026715 None:intergenic 25.0%
!!! TGCCTCTAAAACATTTTTAT+TGG + chr4_3:65026744-65026763 Msa0656000:intron 25.0%
!!! GCCTCTAAAACATTTTTATT+GGG + chr4_3:65026745-65026764 Msa0656000:intron 25.0%
!!! CCTCTAAAACATTTTTATTG+GGG + chr4_3:65026746-65026765 Msa0656000:intron 25.0%
!!! TAATTAGAAAGTTCTAAGCA+TGG - chr4_3:65026785-65026804 None:intergenic 25.0%
! TGAATGATCTTATATTGAAG+AGG + chr4_3:65027346-65027365 Msa0656000:CDS 25.0%
! GAATGATCTTATATTGAAGA+GGG + chr4_3:65027347-65027366 Msa0656000:CDS 25.0%
! GCTTGAAGTATATAGAAAAA+AGG + chr4_3:65027398-65027417 Msa0656000:CDS 25.0%
! CAAGAATCAAAAGAAGAAAA+TGG + chr4_3:65027543-65027562 Msa0656000:CDS 25.0%
!!! AACCTTTTTGTTATCCAAAT+TGG - chr4_3:65027997-65028016 None:intergenic 25.0%
! AATTTGGATAACAAAAAGGT+TGG + chr4_3:65027996-65028015 Msa0656000:CDS 25.0%
!!! TTTTTTACCTGTCATATCTT+TGG - chr4_3:65028240-65028259 None:intergenic 25.0%
! CAAGTGTTTACAATTTACAT+CGG - chr4_3:65028333-65028352 None:intergenic 25.0%
!! TTTTTCTTCGAAAAATGGAT+AGG - chr4_3:65028406-65028425 None:intergenic 25.0%
! GAAGAAAAAAAATTATCCGA+GGG + chr4_3:65028417-65028436 Msa0656000:intron 25.0%
! AAATAAGATAAAAGCCTGTT+AGG - chr4_3:65028491-65028510 None:intergenic 25.0%
! ATTGAGATATGAATTCATTG+AGG + chr4_3:65028515-65028534 Msa0656000:intron 25.0%
! TGTATATATGTATACTGCAT+TGG - chr4_3:65028606-65028625 None:intergenic 25.0%
! CATGATTACCTTTATGAAAA+AGG + chr4_3:65028825-65028844 Msa0656000:three_prime_UTR 25.0%
! TTTATTAGAGAGACAGAATT+AGG + chr4_3:65028992-65029011 Msa0656000:three_prime_UTR 25.0%
! TTATTAGAGAGACAGAATTA+GGG + chr4_3:65028993-65029012 Msa0656000:three_prime_UTR 25.0%
! TAATACAAAAGATGAGAAAG+AGG - chr4_3:65029084-65029103 None:intergenic 25.0%
TGTACATAGCAAAAAAACAG+AGG + chr4_3:65024911-65024930 Msa0656000:five_prime_UTR 30.0%
GATTGCATAAACTAGAACAA+GGG - chr4_3:65025008-65025027 None:intergenic 30.0%
TAGTTTATGCAATCCTAGAA+TGG + chr4_3:65025014-65025033 Msa0656000:CDS 30.0%
ATTGGAACAGAAAACCAATT+TGG - chr4_3:65025221-65025240 None:intergenic 30.0%
ATATCTATTTCCTTCATCCA+TGG - chr4_3:65025346-65025365 None:intergenic 30.0%
GAATGATCAATAACAATGCA+AGG - chr4_3:65025469-65025488 None:intergenic 30.0%
CAAAACATTGAAGAAAACAG+TGG + chr4_3:65025622-65025641 Msa0656000:CDS 30.0%
! TGGAATTCATATGTTGTTTG+AGG + chr4_3:65025642-65025661 Msa0656000:CDS 30.0%
TGATTCAGGTACAAAAAAAG+TGG + chr4_3:65025672-65025691 Msa0656000:CDS 30.0%
GATCTTTACAAGCTTGAATT+TGG + chr4_3:65025754-65025773 Msa0656000:CDS 30.0%
!! CTTGAATTTGGTGTAAAGAA+AGG + chr4_3:65025766-65025785 Msa0656000:CDS 30.0%
! TTTGAGATTGAATGTTCCAA+AGG + chr4_3:65025813-65025832 Msa0656000:CDS 30.0%
TCAAAATAGATGTGATAAGG+TGG + chr4_3:65025990-65026009 Msa0656000:CDS 30.0%
CCAATTCTCAATTAATGGTT+CGG - chr4_3:65026082-65026101 None:intergenic 30.0%
ATGTGCCAATTCTCAATTAA+TGG - chr4_3:65026087-65026106 None:intergenic 30.0%
AGAGAATAAAAATGTGTCCA+AGG + chr4_3:65026140-65026159 Msa0656000:CDS 30.0%
CTTCAACATTATCATGCTTA+TGG - chr4_3:65026233-65026252 None:intergenic 30.0%
AACATGGAAAGAATGATGAA+TGG + chr4_3:65026255-65026274 Msa0656000:CDS 30.0%
!! TATGAAGCAGAAGTATCAAT+TGG + chr4_3:65026461-65026480 Msa0656000:CDS 30.0%
AATTCCTGATCATGAACAAA+TGG + chr4_3:65026490-65026509 Msa0656000:CDS 30.0%
! TAAAATCATGGTTCTATGCA+TGG - chr4_3:65026652-65026671 None:intergenic 30.0%
! AGAACCATGATTTTAAATCG+AGG + chr4_3:65026657-65026676 Msa0656000:intron 30.0%
!! CCCCAATAAAAATGTTTTAG+AGG - chr4_3:65026749-65026768 None:intergenic 30.0%
CATTCTTAATTCAAGTGACA+TGG - chr4_3:65026905-65026924 None:intergenic 30.0%
AATCATTGCCATTGTTTGAT+TGG - chr4_3:65027223-65027242 None:intergenic 30.0%
AAACAATGGCAATGATTAAC+AGG + chr4_3:65027226-65027245 Msa0656000:CDS 30.0%
AAAAAAGGTTCATGAGTATG+AGG + chr4_3:65027413-65027432 Msa0656000:CDS 30.0%
AAATATAACACAGCATCTAC+AGG - chr4_3:65027591-65027610 None:intergenic 30.0%
TGTAGATGCTGTGTTATATT+TGG + chr4_3:65027590-65027609 Msa0656000:CDS 30.0%
! GGAATCATTGTCAAATTTTG+AGG + chr4_3:65027614-65027633 Msa0656000:CDS 30.0%
! CATGTAAATGGATTTGCAAA+TGG + chr4_3:65027813-65027832 Msa0656000:CDS 30.0%
! AATGGATTTGCAAATGGTAA+TGG + chr4_3:65027819-65027838 Msa0656000:CDS 30.0%
GACCAATTTGGATAACAAAA+AGG + chr4_3:65027992-65028011 Msa0656000:CDS 30.0%
! TTATGAGAGACTACAAGTTT+TGG + chr4_3:65028043-65028062 Msa0656000:CDS 30.0%
CGAAGAAAAAAAATTATCCG+AGG + chr4_3:65028416-65028435 Msa0656000:intron 30.0%
ATAACCTAACTAAGCACTTA+TGG - chr4_3:65028464-65028483 None:intergenic 30.0%
GTTAGGTTATTTATCCTAAC+AGG + chr4_3:65028474-65028493 Msa0656000:intron 30.0%
ATCAACTACAATCTGCATTT+AGG - chr4_3:65028545-65028564 None:intergenic 30.0%
ATGATCTGTTTGATACAATG+TGG + chr4_3:65028713-65028732 Msa0656000:three_prime_UTR 30.0%
! TTTCATTTTCTTTGTCCAAG+TGG + chr4_3:65028775-65028794 Msa0656000:three_prime_UTR 30.0%
! TTCATTTTCTTTGTCCAAGT+GGG + chr4_3:65028776-65028795 Msa0656000:three_prime_UTR 30.0%
AACACAACCCACAAAAATTT+GGG - chr4_3:65028802-65028821 None:intergenic 30.0%
GATTACCTTTATGAAAAAGG+AGG + chr4_3:65028828-65028847 Msa0656000:three_prime_UTR 30.0%
!! ATCATCCTCCTTTTTCATAA+AGG - chr4_3:65028836-65028855 None:intergenic 30.0%
ATAAAATACAAGTGACAGCA+TGG - chr4_3:65028895-65028914 None:intergenic 30.0%
TTTATGAGGAAATTAAGACC+TGG + chr4_3:65028910-65028929 Msa0656000:three_prime_UTR 30.0%
TAAACAAAATTCTATGCACC+TGG - chr4_3:65028976-65028995 None:intergenic 30.0%
TTGTATTATTGCATCCTATG+AGG + chr4_3:65029096-65029115 Msa0656000:three_prime_UTR 30.0%
CAAGAAAGAAAAAACCTCAT+AGG - chr4_3:65029113-65029132 None:intergenic 30.0%
TAACATGGTTGCAAACTTGT+TGG - chr4_3:65024963-65024982 None:intergenic 35.0%
! TAGAACAAGGGTGATTTTGT+TGG - chr4_3:65024996-65025015 None:intergenic 35.0%
GGATTGCATAAACTAGAACA+AGG - chr4_3:65025009-65025028 None:intergenic 35.0%
GGATTATCAGAATCCATTCT+AGG - chr4_3:65025030-65025049 None:intergenic 35.0%
TGCTGTTGAGATTTCCAAAT+TGG + chr4_3:65025204-65025223 Msa0656000:CDS 35.0%
! TTCAGCTAGTTTGTGATGAT+TGG - chr4_3:65025239-65025258 None:intergenic 35.0%
TGAATCAGATGATATGTGTG+AGG + chr4_3:65025255-65025274 Msa0656000:CDS 35.0%
! AGATGTTTTTCCATGGATGA+AGG + chr4_3:65025333-65025352 Msa0656000:CDS 35.0%
! GATATGATTAATGGTGCTGA+TGG + chr4_3:65025361-65025380 Msa0656000:CDS 35.0%
!! ATTAATGGTGCTGATGGAAA+GGG + chr4_3:65025367-65025386 Msa0656000:CDS 35.0%
GGAATTGAGAAAGTTGAAGA+GGG + chr4_3:65025388-65025407 Msa0656000:CDS 35.0%
GATCAATAACAATGCAAGGA+GGG - chr4_3:65025465-65025484 None:intergenic 35.0%
TGATCAATAACAATGCAAGG+AGG - chr4_3:65025466-65025485 None:intergenic 35.0%
AAGCAGAACATGATCAAAGA+AGG + chr4_3:65025523-65025542 Msa0656000:CDS 35.0%
! TTTGAGGTTGAACATGATTC+AGG + chr4_3:65025658-65025677 Msa0656000:CDS 35.0%
TTCAGGTACAAAAAAAGTGG+AGG + chr4_3:65025675-65025694 Msa0656000:CDS 35.0%
AAAGAAAGGGAATGAAACCT+TGG + chr4_3:65025780-65025799 Msa0656000:CDS 35.0%
TGTTGAAGTTGAGAAAACTG+AGG + chr4_3:65025870-65025889 Msa0656000:CDS 35.0%
CAGTTTGATTCCTGTTGAAT+TGG + chr4_3:65025939-65025958 Msa0656000:CDS 35.0%
AAATAGATGTGATAAGGTGG+TGG + chr4_3:65025993-65026012 Msa0656000:CDS 35.0%
! GGAGAGTGAAGATTTTATTC+TGG + chr4_3:65026029-65026048 Msa0656000:CDS 35.0%
CCGAACCATTAATTGAGAAT+TGG + chr4_3:65026079-65026098 Msa0656000:CDS 35.0%
ATTGAGAATTGGCACATTTC+TGG + chr4_3:65026090-65026109 Msa0656000:CDS 35.0%
! AGATGTGAGGTTTTCTCAAA+TGG + chr4_3:65026197-65026216 Msa0656000:CDS 35.0%
!!! GGATATTTTGATGGAGAACT+AGG + chr4_3:65026276-65026295 Msa0656000:CDS 35.0%
CTAGGTTCATATGTTTCTCT+AGG + chr4_3:65026294-65026313 Msa0656000:CDS 35.0%
TCATCCATTTGTTCATGATC+AGG - chr4_3:65026497-65026516 None:intergenic 35.0%
GAACAAATGGATGAGTATCA+AGG + chr4_3:65026503-65026522 Msa0656000:CDS 35.0%
TTGTATCCGAAAGAATATCC+TGG - chr4_3:65026529-65026548 None:intergenic 35.0%
TTTAATGCCCAACATGATAG+TGG + chr4_3:65026590-65026609 Msa0656000:CDS 35.0%
! ATGCATGGATTTGAGGTAAA+AGG - chr4_3:65026637-65026656 None:intergenic 35.0%
! GCAACCTCGATTTAAAATCA+TGG - chr4_3:65026664-65026683 None:intergenic 35.0%
TAACCATATGCCTTCATCTT+TGG + chr4_3:65026936-65026955 Msa0656000:CDS 35.0%
TCATTAAGCTCCAAAGATGA+AGG - chr4_3:65026949-65026968 None:intergenic 35.0%
!!! AGAAACTACTTTTTCTCGAG+AGG + chr4_3:65027031-65027050 Msa0656000:CDS 35.0%
!!! TACTTTTTCTCGAGAGGAAA+GGG + chr4_3:65027037-65027056 Msa0656000:CDS 35.0%
! TCATTGGATGGAAGTGTAAT+AGG + chr4_3:65027075-65027094 Msa0656000:CDS 35.0%
AATCCGCATTGAAATCTGAA+AGG + chr4_3:65027136-65027155 Msa0656000:CDS 35.0%
CTTCCTTTCAGATTTCAATG+CGG - chr4_3:65027142-65027161 None:intergenic 35.0%
TTTGCAGTATCAGAGAATGA+TGG + chr4_3:65027284-65027303 Msa0656000:CDS 35.0%
AGATGCTGTGTTATATTTGG+AGG + chr4_3:65027593-65027612 Msa0656000:CDS 35.0%
!! TGTCAAATTTTGAGGAAGAG+AGG + chr4_3:65027622-65027641 Msa0656000:CDS 35.0%
! ACTAGAACAGCTGAAAGTAT+TGG + chr4_3:65027653-65027672 Msa0656000:CDS 35.0%
GATTTCCAAGGTCATGTAAA+TGG + chr4_3:65027801-65027820 Msa0656000:CDS 35.0%
CAAATCCATTTACATGACCT+TGG - chr4_3:65027809-65027828 None:intergenic 35.0%
!! GTACTGATTGCATCAAAAAG+TGG - chr4_3:65027897-65027916 None:intergenic 35.0%
ACTCAACTCTACATCTTCTT+CGG - chr4_3:65027919-65027938 None:intergenic 35.0%
TTCAGCTGAAAAGACCAATT+TGG + chr4_3:65027980-65027999 Msa0656000:CDS 35.0%
!! CAAAAAGGTTGGTTTAGAAG+AGG + chr4_3:65028007-65028026 Msa0656000:CDS 35.0%
TGTATCAGCTCATTGAGAAA+AGG + chr4_3:65028092-65028111 Msa0656000:CDS 35.0%
GTATCAGCTCATTGAGAAAA+GGG + chr4_3:65028093-65028112 Msa0656000:CDS 35.0%
TATCAGCTCATTGAGAAAAG+GGG + chr4_3:65028094-65028113 Msa0656000:CDS 35.0%
TCATTGAGAAAAGGGGATAA+AGG + chr4_3:65028101-65028120 Msa0656000:CDS 35.0%
CATTGAGAAAAGGGGATAAA+GGG + chr4_3:65028102-65028121 Msa0656000:CDS 35.0%
TACAACATCTACGTGATTTG+AGG + chr4_3:65028147-65028166 Msa0656000:CDS 35.0%
AACTCTACCAAAGATATGAC+AGG + chr4_3:65028230-65028249 Msa0656000:three_prime_UTR 35.0%
TATGCCATAAGTGCTTAGTT+AGG + chr4_3:65028457-65028476 Msa0656000:intron 35.0%
ATCAAACAGATCATGCTACA+AGG - chr4_3:65028707-65028726 None:intergenic 35.0%
ATCTGTTTGATACAATGTGG+TGG + chr4_3:65028716-65028735 Msa0656000:three_prime_UTR 35.0%
GAACACAACCCACAAAAATT+TGG - chr4_3:65028803-65028822 None:intergenic 35.0%
!! GCTGTCACTTGTATTTTATG+AGG + chr4_3:65028896-65028915 Msa0656000:three_prime_UTR 35.0%
!!! GGCACTGGAATCATTTTTTA+TGG - chr4_3:65028955-65028974 None:intergenic 35.0%
TAAAAAATGATTCCAGTGCC+AGG + chr4_3:65028955-65028974 Msa0656000:three_prime_UTR 35.0%
! AAACAGAGCATCTTCAACCA+TGG + chr4_3:65024934-65024953 Msa0656000:exon 40.0%
! GTTGGTGTTTCTGTGTAACA+TGG - chr4_3:65024978-65024997 None:intergenic 40.0%
TCACACACAAGATCTCTACA+AGG - chr4_3:65025178-65025197 None:intergenic 40.0%
!! GATTAATGGTGCTGATGGAA+AGG + chr4_3:65025366-65025385 Msa0656000:CDS 40.0%
GGGAATTGAGAAAGTTGAAG+AGG + chr4_3:65025387-65025406 Msa0656000:CDS 40.0%
TGTGCTTGTTCTGTTTGTGA+TGG + chr4_3:65025709-65025728 Msa0656000:CDS 40.0%
! TTCTGTTTGTGATGGTGTCA+AGG + chr4_3:65025717-65025736 Msa0656000:CDS 40.0%
! TGATGGTGTCAAGGAAACTA+TGG + chr4_3:65025726-65025745 Msa0656000:CDS 40.0%
TCTCAAAGTTTCCTCTTCCA+AGG - chr4_3:65025800-65025819 None:intergenic 40.0%
ATTGAATGTTCCAAAGGCTC+AGG + chr4_3:65025819-65025838 Msa0656000:CDS 40.0%
GTGGATTCAACCAATTCAAC+AGG - chr4_3:65025952-65025971 None:intergenic 40.0%
! ATTTCCATTTTCTGTGGCAG+TGG - chr4_3:65025971-65025990 None:intergenic 40.0%
!! GCACATTTCTGGTGATATTG+TGG + chr4_3:65026101-65026120 Msa0656000:CDS 40.0%
AAATGTGTCCAAGGTCAATG+AGG + chr4_3:65026149-65026168 Msa0656000:CDS 40.0%
TGATTCAACCTCATTGACCT+TGG - chr4_3:65026160-65026179 None:intergenic 40.0%
GATGATGCATCACAAACTCA+AGG + chr4_3:65026428-65026447 Msa0656000:CDS 40.0%
TCAAGGCCAGGATATTCTTT+CGG + chr4_3:65026520-65026539 Msa0656000:CDS 40.0%
ATTAAACCTGACTGAGCTAG+TGG - chr4_3:65026576-65026595 None:intergenic 40.0%
AGGCTTACCACTATCATGTT+GGG - chr4_3:65026600-65026619 None:intergenic 40.0%
! TGGTTCTATGCATGGATTTG+AGG - chr4_3:65026644-65026663 None:intergenic 40.0%
GTCGCAGACCTTTATAATGT+TGG + chr4_3:65026685-65026704 Msa0656000:intron 40.0%
GGAGCTTAATGAGAATGAAG+AGG + chr4_3:65026957-65026976 Msa0656000:CDS 40.0%
!! TGTAGTTGATGAAGACTCTC+CGG - chr4_3:65027009-65027028 None:intergenic 40.0%
!!! CTACTTTTTCTCGAGAGGAA+AGG + chr4_3:65027036-65027055 Msa0656000:CDS 40.0%
GTCAGGAACAGAAGATTCAT+TGG + chr4_3:65027059-65027078 Msa0656000:CDS 40.0%
GGAACAGAAGATTCATTGGA+TGG + chr4_3:65027063-65027082 Msa0656000:CDS 40.0%
GTAATAGGCGACATAGAATG+TGG + chr4_3:65027090-65027109 Msa0656000:CDS 40.0%
CGCATTGAAATCTGAAAGGA+AGG + chr4_3:65027140-65027159 Msa0656000:CDS 40.0%
TGTAGCAGCCAATCAAACAA+TGG + chr4_3:65027212-65027231 Msa0656000:CDS 40.0%
GAACATCTTCGTGAAGAGAA+CGG + chr4_3:65027741-65027760 Msa0656000:CDS 40.0%
AACATCTTCGTGAAGAGAAC+GGG + chr4_3:65027742-65027761 Msa0656000:CDS 40.0%
GACGATCATGATGATTTCCA+AGG + chr4_3:65027789-65027808 Msa0656000:CDS 40.0%
!! GGTAATGGAAAGCATCATCA+AGG + chr4_3:65027834-65027853 Msa0656000:CDS 40.0%
!! ATGGAAAGCATCATCAAGGA+AGG + chr4_3:65027838-65027857 Msa0656000:CDS 40.0%
TCATCAAGGAAGGAAAGTCT+TGG + chr4_3:65027848-65027867 Msa0656000:CDS 40.0%
TCTTGGCTACTAAAGCAAAG+AGG + chr4_3:65027865-65027884 Msa0656000:CDS 40.0%
GAAGAAGATGTAGAGTTGAG+TGG + chr4_3:65027918-65027937 Msa0656000:CDS 40.0%
!! AAAGGTTGGTTTAGAAGAGG+AGG + chr4_3:65028010-65028029 Msa0656000:CDS 40.0%
!! TGAGAGACTACAAGTTTTGG+AGG + chr4_3:65028046-65028065 Msa0656000:CDS 40.0%
TCTACGTGATTTGAGGAATG+TGG + chr4_3:65028154-65028173 Msa0656000:CDS 40.0%
ACACTTGTCATATAAGCCCT+CGG - chr4_3:65028436-65028455 None:intergenic 40.0%
! AAGTGGGCCCAAATTTTTGT+GGG + chr4_3:65028792-65028811 Msa0656000:three_prime_UTR 40.0%
TGATGAGCATATGTGTGTGT+AGG + chr4_3:65028852-65028871 Msa0656000:three_prime_UTR 40.0%
GATGAGCATATGTGTGTGTA+GGG + chr4_3:65028853-65028872 Msa0656000:three_prime_UTR 40.0%
TGAGGTAAGAGTGAAGTTTG+AGG + chr4_3:65029051-65029070 Msa0656000:three_prime_UTR 40.0%
ATTCTTGCACACCACATGCA+GGG - chr4_3:65025121-65025140 None:intergenic 45.0%
AATTCTTGCACACCACATGC+AGG - chr4_3:65025122-65025141 None:intergenic 45.0%
! GGTTTGAGATGTTCTTGCTG+TGG + chr4_3:65025409-65025428 Msa0656000:CDS 45.0%
AGGGAATGAAACCTTGGAAG+AGG + chr4_3:65025786-65025805 Msa0656000:CDS 45.0%
TGATCATCATCCTGAGCCTT+TGG - chr4_3:65025832-65025851 None:intergenic 45.0%
GAATCCACTGCCACAGAAAA+TGG + chr4_3:65025964-65025983 Msa0656000:CDS 45.0%
! TAGATGTGATAAGGTGGTGG+AGG + chr4_3:65025996-65026015 Msa0656000:CDS 45.0%
TGCATCACAAACTCAAGGTG+AGG + chr4_3:65026433-65026452 Msa0656000:CDS 45.0%
ATCACAAACTCAAGGTGAGG+AGG + chr4_3:65026436-65026455 Msa0656000:CDS 45.0%
AATGGATGAGTATCAAGGCC+AGG + chr4_3:65026508-65026527 Msa0656000:CDS 45.0%
ATTCATCCACTAGCTCAGTC+AGG + chr4_3:65026567-65026586 Msa0656000:CDS 45.0%
GAGGCTTACCACTATCATGT+TGG - chr4_3:65026601-65026620 None:intergenic 45.0%
AACTGCAAATGTGGTCGCAT+CGG - chr4_3:65026720-65026739 None:intergenic 45.0%
AGGCATCACAACTGCAAATG+TGG - chr4_3:65026729-65026748 None:intergenic 45.0%
!! GGCATATGGTTACTTGCTGT+TGG - chr4_3:65026928-65026947 None:intergenic 45.0%
! GCTCCAAAGATGAAGGCATA+TGG - chr4_3:65026942-65026961 None:intergenic 45.0%
!!! TGCGGATTTTAACTCCTCGA+AGG - chr4_3:65027124-65027143 None:intergenic 45.0%
AGAGAAAGCAGCAATGCAGA+TGG + chr4_3:65027257-65027276 Msa0656000:CDS 45.0%
ACAATCCGAGTACGATCAAG+AGG + chr4_3:65027311-65027330 Msa0656000:CDS 45.0%
CATAGCCTCTTGATCGTACT+CGG - chr4_3:65027319-65027338 None:intergenic 45.0%
GAACTCAGAGTCAGGAACAT+AGG + chr4_3:65028176-65028195 Msa0656000:CDS 45.0%
CAGGAACATAGGAGATCTTG+CGG + chr4_3:65028187-65028206 Msa0656000:CDS 45.0%
GCAAACTTCTCATGTGTGCT+TGG - chr4_3:65028582-65028601 None:intergenic 45.0%
AGACAATGGGAGATCCCTAA+TGG + chr4_3:65028669-65028688 Msa0656000:three_prime_UTR 45.0%
GGATTCTCCCTTCTCCATTA+GGG - chr4_3:65028686-65028705 None:intergenic 45.0%
AGGATTCTCCCTTCTCCATT+AGG - chr4_3:65028687-65028706 None:intergenic 45.0%
CACAAAAATTTGGGCCCACT+TGG - chr4_3:65028793-65028812 None:intergenic 45.0%
! CAAGTGGGCCCAAATTTTTG+TGG + chr4_3:65028791-65028810 Msa0656000:three_prime_UTR 45.0%
AAATTCTATGCACCTGGCAC+TGG - chr4_3:65028970-65028989 None:intergenic 45.0%
!! TGCAAACTTGTTGGCAGCCA+TGG - chr4_3:65024954-65024973 None:intergenic 50.0%
! ACCACATGCAGGGTCTTTTC+AGG - chr4_3:65025111-65025130 None:intergenic 50.0%
!! TGTGATAAGGTGGTGGAGGA+AGG + chr4_3:65026000-65026019 Msa0656000:CDS 50.0%
!! GTGATAAGGTGGTGGAGGAA+GGG + chr4_3:65026001-65026020 Msa0656000:CDS 50.0%
TGAAGACTCTCCGGAGAAGT+CGG - chr4_3:65027000-65027019 None:intergenic 50.0%
TTTCTCGAGAGGAAAGGGTC+AGG + chr4_3:65027042-65027061 Msa0656000:CDS 50.0%
TCCTTCTTGTAGCAACGCTG+AGG + chr4_3:65027491-65027510 Msa0656000:CDS 50.0%
TCCTCAGCGTTGCTACAAGA+AGG - chr4_3:65027495-65027514 None:intergenic 50.0%
AGCAACGCTGAGGATAGTGA+TGG + chr4_3:65027501-65027520 Msa0656000:CDS 50.0%
GCAACGCTGAGGATAGTGAT+GGG + chr4_3:65027502-65027521 Msa0656000:CDS 50.0%
!! CAGCATCTACAGGAGTGTTC+TGG - chr4_3:65027581-65027600 None:intergenic 50.0%
CTTCGTGAAGAGAACGGGAA+TGG + chr4_3:65027747-65027766 Msa0656000:CDS 50.0%
!! GGTTGGTTTAGAAGAGGAGG+TGG + chr4_3:65028013-65028032 Msa0656000:CDS 50.0%
GGAATGTGGAACTCAGAGTC+AGG + chr4_3:65028168-65028187 Msa0656000:CDS 50.0%
!! TGTGCTTGGTTTGCAGCATG+TGG - chr4_3:65028568-65028587 None:intergenic 50.0%
TGGGAGATCCCTAATGGAGA+AGG + chr4_3:65028675-65028694 Msa0656000:three_prime_UTR 50.0%
GGGAGATCCCTAATGGAGAA+GGG + chr4_3:65028676-65028695 Msa0656000:three_prime_UTR 50.0%
! TAAGACCTGGCTTGCAAAGC+TGG + chr4_3:65028923-65028942 Msa0656000:three_prime_UTR 50.0%
GCCTGAAAAGACCCTGCATG+TGG + chr4_3:65025107-65025126 Msa0656000:CDS 55.0%
!! GGTGGTGGAGGAAGGGTTTA+AGG + chr4_3:65026008-65026027 Msa0656000:CDS 55.0%
! ATGTGGTGACGTGACCTTCG+AGG + chr4_3:65027107-65027126 Msa0656000:CDS 55.0%
TCTCTCCAGCTTTGCAAGCC+AGG - chr4_3:65028931-65028950 None:intergenic 55.0%
!! TCCCGACACACCGACTTCTC+CGG + chr4_3:65026987-65027006 Msa0656000:CDS 60.0%
TCCGGAGAAGTCGGTGTGTC+GGG - chr4_3:65026991-65027010 None:intergenic 60.0%
CTCCGGAGAAGTCGGTGTGT+CGG - chr4_3:65026992-65027011 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 65024814 65029212 65024814 ID=Msa0656000;Name=Msa0656000
chr4_3 mRNA 65024814 65029212 65024814 ID=Msa0656000-mRNA-1;Parent=Msa0656000;Name=Msa0656000-mRNA-1;_AED=0.04;_eAED=0.04;_QI=139|1|1|1|0.33|0.25|4|697|967
chr4_3 exon 65024814 65026315 65024814 ID=Msa0656000-mRNA-1:exon:18415;Parent=Msa0656000-mRNA-1
chr4_3 exon 65026423 65026611 65026423 ID=Msa0656000-mRNA-1:exon:18416;Parent=Msa0656000-mRNA-1
chr4_3 exon 65026863 65028251 65026863 ID=Msa0656000-mRNA-1:exon:18417;Parent=Msa0656000-mRNA-1
chr4_3 exon 65028553 65029212 65028553 ID=Msa0656000-mRNA-1:exon:18418;Parent=Msa0656000-mRNA-1
chr4_3 five_prime_UTR 65024814 65024952 65024814 ID=Msa0656000-mRNA-1:five_prime_utr;Parent=Msa0656000-mRNA-1
chr4_3 CDS 65024953 65026315 65024953 ID=Msa0656000-mRNA-1:cds;Parent=Msa0656000-mRNA-1
chr4_3 CDS 65026423 65026611 65026423 ID=Msa0656000-mRNA-1:cds;Parent=Msa0656000-mRNA-1
chr4_3 CDS 65026863 65028214 65026863 ID=Msa0656000-mRNA-1:cds;Parent=Msa0656000-mRNA-1
chr4_3 three_prime_UTR 65028215 65028251 65028215 ID=Msa0656000-mRNA-1:three_prime_utr;Parent=Msa0656000-mRNA-1
chr4_3 three_prime_UTR 65028553 65029212 65028553 ID=Msa0656000-mRNA-1:three_prime_utr;Parent=Msa0656000-mRNA-1
Gene Sequence

>Msa0656000

ATGGCTGCCAACAAGTTTGCAACCATGTTACACAGAAACACCAACAAAATCACCCTTGTTCTAGTTTATGCAATCCTAGAATGGATTCTGATAATCCTTCTTCTTCTAAATTCTCTTTTTTCATATTTGATCATAAAGTTTGCTGATTATTTTGGCCTGAAAAGACCCTGCATGTGGTGTGCAAGAATTGATCATATCATAGAGTCTGAAAAAAATATGAATCCTTGTAGAGATCTTGTGTGTGAAGCTCATGCTGTTGAGATTTCCAAATTGGTTTTCTGTTCCAATCATCACAAACTAGCTGAATCAGATGATATGTGTGAGGATTGTTCATCTTCATTTTCATTCAAACCAAATTATGTCAAACTTTCTCAAAGTTTAGATGTTTTTCCATGGATGAAGGAAATAGATATGATTAATGGTGCTGATGGAAAGGGAATTGAGAAAGTTGAAGAGGGTTTGAGATGTTCTTGCTGTGGTGTTACTGTTAACTTTGATAACAGATTCTACCCTCCTTGCATTGTTATTGATCATTCTATGAACATTTTGGATTATGAACAGAACTCACAGAAGCAGAACATGATCAAAGAAGGTGTGTTTGTCTCAGAAGATGATCATCAGTCAGATCAAAGCAGATCATATTTTGAACTTGATCATCATGAAAATCAACAAAACATTGAAGAAAACAGTGGAATTCATATGTTGTTTGAGGTTGAACATGATTCAGGTACAAAAAAAGTGGAGGCAGAAGAGAATTGTGCTTGTTCTGTTTGTGATGGTGTCAAGGAAACTATGGTTGATGATCTTTACAAGCTTGAATTTGGTGTAAAGAAAGGGAATGAAACCTTGGAAGAGGAAACTTTGAGATTGAATGTTCCAAAGGCTCAGGATGATGATCAAGCTTGTGACAAGACTACTGTTGAAGTTGAGAAAACTGAGGAAATTCCACCTAAACATCTTGAATTTTTCATTCATGGTGATGATTGCAGTTTGATTCCTGTTGAATTGGTTGAATCCACTGCCACAGAAAATGGAAATCAAAATAGATGTGATAAGGTGGTGGAGGAAGGGTTTAAGGAGAGTGAAGATTTTATTCTGGATTTTGGTATGAGTACTGATGCAGAAGCCGAACCATTAATTGAGAATTGGCACATTTCTGGTGATATTGTGGCAGAATTTTCATGTCAAGAGAATAAAAATGTGTCCAAGGTCAATGAGGTTGAATCAGATCAATTGAATTTTCAAGATGTGAGGTTTTCTCAAATGGATGAAGAATTCCATAAGCATGATAATGTTGAAGTAAACATGGAAAGAATGATGAATGGATATTTTGATGGAGAACTAGGTTCATATGTTTCTCTAGCTTCTGATGATGCATCACAAACTCAAGGTGAGGAGGAATATGAAGCAGAAGTATCAATTGGAACTGAAATTCCTGATCATGAACAAATGGATGAGTATCAAGGCCAGGATATTCTTTCGGATACAAATCAACGAATGCAAGAAGATTCATCCACTAGCTCAGTCAGGTTTAATGCCCAACATGATAGTGGTCATGACAGAGATGATGAAGAGTTTGTAGAATTTAAAACCATGTCACTTGAATTAAGAATGCCAACAGCAAGTAACCATATGCCTTCATCTTTGGAGCTTAATGAGAATGAAGAGGAAAAAATTCCCGACACACCGACTTCTCCGGAGAGTCTTCATCAACTACATAAGAAACTACTTTTTCTCGAGAGGAAAGGGTCAGGAACAGAAGATTCATTGGATGGAAGTGTAATAGGCGACATAGAATGTGGTGACGTGACCTTCGAGGAGTTAAAATCCGCATTGAAATCTGAAAGGAAGGCTTTGAAAACACTATATGCAGAGCTAGAAGAAGAAAGAAATGCATCTGCTGTAGCAGCCAATCAAACAATGGCAATGATTAACAGGCTTCAAGAAGAGAAAGCAGCAATGCAGATGGAAGCTTTGCAGTATCAGAGAATGATGGATGAACAATCCGAGTACGATCAAGAGGCTATGCAGATTTTGAATGATCTTATATTGAAGAGGGAGAAAGAGAAGCATGAGCTAGAAAAAGAGCTTGAAGTATATAGAAAAAAGGTTCATGAGTATGAGGTAAGAGAAAAGATTTTGTCAAGAAGAGATAGTAGCATAAGAAGCAGAACTTCATCTCCTTCTTGTAGCAACGCTGAGGATAGTGATGGGTTGTCTATTGATTTCAATCAAGAATCAAAAGAAGAAAATGGTTTTCATAGCAACCAGAACACTCCTGTAGATGCTGTGTTATATTTGGAGGAATCATTGTCAAATTTTGAGGAAGAGAGGTTATCAATACTAGAACAGCTGAAAGTATTGGAAGAAAAGCTAATTATATTGAATTATGAAGATGAAGGACACTGCTTTGATGATACTGTATCGATAGAACATCTTCGTGAAGAGAACGGGAATGGATATCATGATCACGATCATGACGATCATGATGATTTCCAAGGTCATGTAAATGGATTTGCAAATGGTAATGGAAAGCATCATCAAGGAAGGAAAGTCTTGGCTACTAAAGCAAAGAGGCTTCTACCACTTTTTGATGCAATCAGTACCGAAGAAGATGTAGAGTTGAGTGGAGATGAACATGAATTAGACTTTTCTCAGTTGCAAAATGTTTCAGCTGAAAAGACCAATTTGGATAACAAAAAGGTTGGTTTAGAAGAGGAGGTGGATCATGTTTATGAGAGACTACAAGTTTTGGAGGCAGATAGAGAGTTTCTGAAGCATTGTATCAGCTCATTGAGAAAAGGGGATAAAGGGTTAGATCTTCTTCAAGAAATTTTACAACATCTACGTGATTTGAGGAATGTGGAACTCAGAGTCAGGAACATAGGAGATCTTGCGGTGTAA

Protein sequence

>Msa0656000

MAANKFATMLHRNTNKITLVLVYAILEWILIILLLLNSLFSYLIIKFADYFGLKRPCMWCARIDHIIESEKNMNPCRDLVCEAHAVEISKLVFCSNHHKLAESDDMCEDCSSSFSFKPNYVKLSQSLDVFPWMKEIDMINGADGKGIEKVEEGLRCSCCGVTVNFDNRFYPPCIVIDHSMNILDYEQNSQKQNMIKEGVFVSEDDHQSDQSRSYFELDHHENQQNIEENSGIHMLFEVEHDSGTKKVEAEENCACSVCDGVKETMVDDLYKLEFGVKKGNETLEEETLRLNVPKAQDDDQACDKTTVEVEKTEEIPPKHLEFFIHGDDCSLIPVELVESTATENGNQNRCDKVVEEGFKESEDFILDFGMSTDAEAEPLIENWHISGDIVAEFSCQENKNVSKVNEVESDQLNFQDVRFSQMDEEFHKHDNVEVNMERMMNGYFDGELGSYVSLASDDASQTQGEEEYEAEVSIGTEIPDHEQMDEYQGQDILSDTNQRMQEDSSTSSVRFNAQHDSGHDRDDEEFVEFKTMSLELRMPTASNHMPSSLELNENEEEKIPDTPTSPESLHQLHKKLLFLERKGSGTEDSLDGSVIGDIECGDVTFEELKSALKSERKALKTLYAELEEERNASAVAANQTMAMINRLQEEKAAMQMEALQYQRMMDEQSEYDQEAMQILNDLILKREKEKHELEKELEVYRKKVHEYEVREKILSRRDSSIRSRTSSPSCSNAEDSDGLSIDFNQESKEENGFHSNQNTPVDAVLYLEESLSNFEEERLSILEQLKVLEEKLIILNYEDEGHCFDDTVSIEHLREENGNGYHDHDHDDHDDFQGHVNGFANGNGKHHQGRKVLATKAKRLLPLFDAISTEEDVELSGDEHELDFSQLQNVSAEKTNLDNKKVGLEEEVDHVYERLQVLEADREFLKHCISSLRKGDKGLDLLQEILQHLRDLRNVELRVRNIGDLAV*