AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0367540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367540 MtrunA17_Chr3g0109051 95.402 435 17 1 1 432 1 435 0.0 786
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0367540 AT5G16620.1 53.043 460 173 10 1 430 1 447 1.58e-130 384

Find 127 sgRNAs with CRISPR-Local

Find 517 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTCCGTTTCGTTGATTT+TGG 0.129563 3_1:+63220786 Msa0367540:five_prime_UTR
ACCATACCTCCTTATCATTT+TGG 0.162044 3_1:-63227572 None:intergenic
ATATACAATCTCAACTATTT+TGG 0.169924 3_1:-63227958 None:intergenic
AATCAACGAAACGGAGTAAA+AGG 0.206556 3_1:-63220782 None:intergenic
TTCCCCAAAACCTTTGCTTT+TGG 0.215480 3_1:+63220847 Msa0367540:CDS
AGAAGTCATTTCAAAGATTA+TGG 0.238456 3_1:+63227382 Msa0367540:CDS
AGAAGAAAGCCTTTCACTTT+TGG 0.242737 3_1:+63220899 Msa0367540:CDS
TTCTGCTGCACAGTTTCTTC+TGG 0.245558 3_1:-63224238 None:intergenic
CTAGAGGGTCGCCGCTCTTT+TGG 0.251110 3_1:+63222434 Msa0367540:intron
CCTGATGTTAAACAACAATT+TGG 0.258702 3_1:+63227201 Msa0367540:CDS
GTTTAACATCAGGACTATTA+AGG 0.265236 3_1:-63227191 None:intergenic
AAGATGGAGGTGGTGATAAC+TGG 0.269317 3_1:-63222239 None:intergenic
GAATTACATTTGAAGGTAGA+AGG 0.280899 3_1:-63225750 None:intergenic
ATCTTTGAAATGACTTCTTC+GGG 0.302432 3_1:-63227377 None:intergenic
AATCTTTGAAATGACTTCTT+CGG 0.305276 3_1:-63227378 None:intergenic
ATCTCTTCATCAGACCAAAT+TGG 0.308368 3_1:+63227347 Msa0367540:intron
AGTACAAATTTGCGAAGTTT+AGG 0.309351 3_1:-63228053 None:intergenic
CTTCGGGAGAAAGTCCAATT+TGG 0.318455 3_1:-63227361 None:intergenic
GCCTTGATTAATTTGTTTGT+TGG 0.320161 3_1:+63227738 Msa0367540:exon
TCATCTTTAACATTGATGTC+TGG 0.329458 3_1:-63223137 None:intergenic
GAGCTCTTCCCCGGGGTGTC+AGG 0.345471 3_1:+63227712 Msa0367540:CDS
TTACTGAAGGCTTCTCAAAA+TGG 0.347654 3_1:+63224397 Msa0367540:intron
TGTCCCAAAAGCAAAGGTTT+TGG 0.360372 3_1:-63220851 None:intergenic
TAACATTGATGTCTGGGCCT+GGG 0.364105 3_1:-63223130 None:intergenic
CTTCTTCCTCTCATGTTACC+AGG 0.382539 3_1:+63220945 Msa0367540:CDS
GAATCGCCAAAACCTTGGTT+AGG 0.388655 3_1:-63224427 None:intergenic
GATAGGGAAATCAGTCTTAT+CGG 0.394782 3_1:+63225059 Msa0367540:intron
TCTCACCAAAATCTAAAATC+TGG 0.411193 3_1:+63220980 Msa0367540:CDS
CATCTTTAACATTGATGTCT+GGG 0.413063 3_1:-63223136 None:intergenic
TTTGGATTGGTGTTGGTGTT+GGG 0.414245 3_1:+63222452 Msa0367540:CDS
GTTAAGAGAATTACATTTGA+AGG 0.420217 3_1:-63225757 None:intergenic
GAAAGGAGATCCAGGGGAAA+AGG 0.420348 3_1:-63222970 None:intergenic
ATGATAGCTGCTTGAACTCT+AGG 0.421480 3_1:-63227437 None:intergenic
TGAAAAGCCATGGCAACATC+AGG 0.432003 3_1:-63227410 None:intergenic
TGGTATTTAGCAATATTCAT+TGG 0.436322 3_1:-63227552 None:intergenic
CCAAATTGTTGTTTAACATC+AGG 0.438878 3_1:-63227201 None:intergenic
GGAAAGGGGAAAGGAGATCC+AGG 0.442142 3_1:-63222978 None:intergenic
AAAATATCTGAGCTCTTCCC+CGG 0.442345 3_1:+63227703 Msa0367540:CDS
ACAGGTAGCTTCAAGATTGA+AGG 0.442422 3_1:+63222599 Msa0367540:intron
GCAGCAGACCCTGGTGGTGT+AGG 0.446564 3_1:-63223005 None:intergenic
GGTGGTGTAGGCATTGGAAA+GGG 0.453571 3_1:-63222993 None:intergenic
TAGAGTTCAAGCAGCTATCA+TGG 0.454291 3_1:+63227439 Msa0367540:CDS
TGACGCATCAAGTTCATTCA+AGG 0.461157 3_1:+63224285 Msa0367540:CDS
TTAACATTGATGTCTGGGCC+TGG 0.464648 3_1:-63223131 None:intergenic
GCGTTCACATTCATTTATGA+AGG 0.464839 3_1:-63228090 None:intergenic
AACATTGATGTCTGGGCCTG+GGG 0.470604 3_1:-63223129 None:intergenic
ATCTCATTGCTCGTCACTAA+AGG 0.471715 3_1:-63227780 None:intergenic
AGATGGAGGTGGTGATAACT+GGG 0.473602 3_1:-63222238 None:intergenic
TGAGTACTGTTGTTTGCGGT+AGG 0.475420 3_1:-63220702 None:intergenic
TGTATTCATCTGGCCCATCA+TGG 0.476081 3_1:-63222922 None:intergenic
CAAGTGACGTAAAATAATCA+AGG 0.480613 3_1:+63228165 Msa0367540:three_prime_UTR
CAAGGCTGGCCTGACACCCC+GGG 0.482492 3_1:-63227721 None:intergenic
GAAAAGGCACCACTGTCAAA+TGG 0.483131 3_1:-63222954 None:intergenic
TCAAGGCTGGCCTGACACCC+CGG 0.494700 3_1:-63227722 None:intergenic
AGACTTGAGAGTGGCGTAGT+GGG 0.496069 3_1:-63220729 None:intergenic
GACCCTGGTGGTGTAGGCAT+TGG 0.496472 3_1:-63222999 None:intergenic
TTTCCAATGCCTACACCACC+AGG 0.499853 3_1:+63222996 Msa0367540:CDS
TGCTAAATACCAAAATGATA+AGG 0.501507 3_1:+63227563 Msa0367540:CDS
CATGGGTGGAAGCACTGAAT+GGG 0.502644 3_1:+63227134 Msa0367540:CDS
TGCTTATGAAAGATCATATG+AGG 0.505891 3_1:-63228112 None:intergenic
TAAACCATCTTCTGCACAGT+TGG 0.509673 3_1:-63225111 None:intergenic
AAACCATCTTCTGCACAGTT+GGG 0.513822 3_1:-63225110 None:intergenic
AAATATCTGAGCTCTTCCCC+GGG 0.513824 3_1:+63227704 Msa0367540:CDS
TGCTCATGACTGTATACTAC+AGG 0.519100 3_1:+63227847 Msa0367540:three_prime_UTR
GAAGGGTTCCTCATCTCCTC+AGG 0.521165 3_1:-63225732 None:intergenic
ACATGGGTGGAAGCACTGAA+TGG 0.523691 3_1:+63227133 Msa0367540:CDS
TGAATGGGACAGTCGAATGA+TGG 0.524565 3_1:+63227149 Msa0367540:CDS
ACCAACAAACAAATTAATCA+AGG 0.525827 3_1:-63227739 None:intergenic
AATCGCCAAAACCTTGGTTA+GGG 0.525969 3_1:-63224426 None:intergenic
GAGTACTGTTGTTTGCGGTA+GGG 0.526270 3_1:-63220701 None:intergenic
TCAAGTTGTTGACGATACTC+AGG 0.527223 3_1:-63226165 None:intergenic
TTCTTCCTCTCATGTTACCA+GGG 0.530542 3_1:+63220946 Msa0367540:CDS
TGAGTACTTGTAGAATTAGC+GGG 0.533577 3_1:-63223029 None:intergenic
GGCCAATCCTGATGTTGCCA+TGG 0.534946 3_1:+63227403 Msa0367540:CDS
CAAGCTTTCAAGACCATGAT+GGG 0.535142 3_1:+63222909 Msa0367540:CDS
AGCCATGGCAACATCAGGAT+TGG 0.535702 3_1:-63227405 None:intergenic
GTAGGCATTGGAAAGGGGAA+AGG 0.535843 3_1:-63222987 None:intergenic
AGTCAAGAAACAACATCAGT+TGG 0.538654 3_1:+63222207 Msa0367540:CDS
ACAAACAAATTAATCAAGGC+TGG 0.540529 3_1:-63227735 None:intergenic
AATTACATTTGAAGGTAGAA+GGG 0.544985 3_1:-63225749 None:intergenic
TGTGATTACACAGTCGAAGA+TGG 0.545277 3_1:-63222255 None:intergenic
AAGGCTTTCTTCTTGTGAAG+AGG 0.547042 3_1:-63220889 None:intergenic
ATTTGCGAAGTTTAGGAACT+CGG 0.549716 3_1:-63228046 None:intergenic
ATCAACGAAACGGAGTAAAA+GGG 0.554957 3_1:-63220781 None:intergenic
GGACCCAACTGTGCAGAAGA+TGG 0.556423 3_1:+63225107 Msa0367540:CDS
CCGGAGAATCGCCAAAACCT+TGG 0.557778 3_1:-63224432 None:intergenic
ACAAGCTTTCAAGACCATGA+TGG 0.559229 3_1:+63222908 Msa0367540:CDS
TTACGTGCAGATTGAGAACC+CGG 0.570932 3_1:-63224451 None:intergenic
GAGACTTGAGAGTGGCGTAG+TGG 0.571290 3_1:-63220730 None:intergenic
GCTATTTACCTGAGGAGATG+AGG 0.573622 3_1:+63225724 Msa0367540:intron
GTGAGATTTAGAAGCAACCC+TGG 0.578922 3_1:-63220963 None:intergenic
GTGAATCTCCCAAAAGTGAA+AGG 0.581583 3_1:-63220908 None:intergenic
AGTTTGAGTACTGTTGTTTG+CGG 0.582986 3_1:-63220706 None:intergenic
TCGCCAAAACCTTGGTTAGG+GGG 0.589507 3_1:-63224424 None:intergenic
TTGAGTACTTGTAGAATTAG+CGG 0.590272 3_1:-63223030 None:intergenic
CGATCCATCCAATAAAGTTG+CGG 0.597846 3_1:+63220664 None:intergenic
TGGTGGTGTAGGCATTGGAA+AGG 0.598201 3_1:-63222994 None:intergenic
ACAAAAGTAGAAGCATCCCC+AGG 0.600187 3_1:+63223113 Msa0367540:CDS
GACTGTATACTACAGGCTCA+TGG 0.600637 3_1:+63227854 Msa0367540:three_prime_UTR
GGATGCTTTAGAGAAAATGA+TGG 0.601657 3_1:+63225083 Msa0367540:CDS
TTAGCGGGTGCAGCAGACCC+TGG 0.606810 3_1:-63223014 None:intergenic
AGGTATGTCTACTGTGACAG+TGG 0.607559 3_1:-63223087 None:intergenic
TACACAGTCGAAGATGGAGG+TGG 0.613224 3_1:-63222249 None:intergenic
ATCGCCAAAACCTTGGTTAG+GGG 0.619666 3_1:-63224425 None:intergenic
GAAGAATGTCCCAAAAGCAA+AGG 0.621236 3_1:-63220857 None:intergenic
GTGGTGTAGGCATTGGAAAG+GGG 0.622133 3_1:-63222992 None:intergenic
TAAATACCAAAATGATAAGG+AGG 0.626637 3_1:+63227566 Msa0367540:CDS
TTATTATCTGTATGTCACAA+TGG 0.628634 3_1:-63227885 None:intergenic
TGTTTCAGAAACAACATGGG+TGG 0.635175 3_1:+63227120 Msa0367540:intron
GAAGAGAAGAGACTTGAGAG+TGG 0.642826 3_1:-63220738 None:intergenic
CTGTTGCAGCTATTTACCTG+AGG 0.645530 3_1:+63225716 Msa0367540:intron
TGCTTTAGAGAAAATGATGG+AGG 0.646175 3_1:+63225086 Msa0367540:CDS
AGCAACCCTGGTAACATGAG+AGG 0.647956 3_1:-63220951 None:intergenic
AGGGAAATCAGTCTTATCGG+TGG 0.657965 3_1:+63225062 Msa0367540:intron
GAAAGGGGAAAGGAGATCCA+GGG 0.661185 3_1:-63222977 None:intergenic
GCGGGTGCAGCAGACCCTGG+TGG 0.661584 3_1:-63223011 None:intergenic
CAAAATAATCCATTTGACAG+TGG 0.665538 3_1:+63222945 Msa0367540:CDS
ATGGAGGTGGTGATAACTGG+GGG 0.672674 3_1:-63222236 None:intergenic
TTCCAATGCCTACACCACCA+GGG 0.672745 3_1:+63222997 Msa0367540:CDS
AAGGCTGGCCTGACACCCCG+GGG 0.676232 3_1:-63227720 None:intergenic
CCAACACCAATCCAAAAGAG+CGG 0.686796 3_1:-63222445 None:intergenic
GATTACACAGTCGAAGATGG+AGG 0.696490 3_1:-63222252 None:intergenic
ATGCTGGGAATACAGTGCAG+GGG 0.702895 3_1:+63222142 Msa0367540:intron
CATACAGATAATAATAACTG+TGG 0.708668 3_1:+63227894 Msa0367540:three_prime_UTR
GATGGAGGTGGTGATAACTG+GGG 0.716112 3_1:-63222237 None:intergenic
AAAGGGGAAAGGAGATCCAG+GGG 0.729197 3_1:-63222976 None:intergenic
AATATCTGAGCTCTTCCCCG+GGG 0.732010 3_1:+63227705 Msa0367540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAAAAATTTAAGTTGAAT+TGG + chr3_1:63221223-63221242 Msa0367540:intron 10.0%
!! TTATAAGCAAAAAAAATAAA+TGG + chr3_1:63223722-63223741 Msa0367540:intron 10.0%
!! TATAAGCAAAAAAAATAAAT+GGG + chr3_1:63223723-63223742 Msa0367540:intron 10.0%
!! AAAAAAAAAAAAAAAACGAA+AGG + chr3_1:63226583-63226602 Msa0367540:intron 10.0%
! GCGGGGGGGGGGGGGGGGGG+GGG + chr3_1:63226906-63226925 Msa0367540:intron 100.0%
! CGGGGGGGGGGGGGGGGGGG+GGG + chr3_1:63226907-63226926 Msa0367540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr3_1:63226908-63226927 Msa0367540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr3_1:63226908-63226927 Msa0367540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr3_1:63226908-63226927 Msa0367540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr3_1:63226908-63226927 Msa0367540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr3_1:63226908-63226927 Msa0367540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr3_1:63226908-63226927 Msa0367540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr3_1:63226908-63226927 Msa0367540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr3_1:63226908-63226927 Msa0367540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr3_1:63226908-63226927 Msa0367540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr3_1:63226908-63226927 Msa0367540:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr3_1:63226908-63226927 Msa0367540:intron 100.0%
!! AATTGATTGATAAATAACAA+CGG - chr3_1:63222019-63222038 None:intergenic 15.0%
!! TATTTATGTTCAATACATTA+AGG + chr3_1:63222558-63222577 Msa0367540:intron 15.0%
!! ATTTATGTTCAATACATTAA+GGG + chr3_1:63222559-63222578 Msa0367540:intron 15.0%
!! AATGTTGAAATTGTATAAAA+AGG - chr3_1:63222853-63222872 None:intergenic 15.0%
!!! TAATTTATCTTCATGTTTTT+AGG - chr3_1:63223365-63223384 None:intergenic 15.0%
!! TTACCAGTTATAAATAATAA+AGG - chr3_1:63223428-63223447 None:intergenic 15.0%
!!! CTTTTTGTTTACATAAAATT+AGG + chr3_1:63223645-63223664 Msa0367540:intron 15.0%
!!! ACATTGTTATTACTTAATAA+GGG - chr3_1:63224374-63224393 None:intergenic 15.0%
!!! TACATTGTTATTACTTAATA+AGG - chr3_1:63224375-63224394 None:intergenic 15.0%
!! ATTCTATCATATTTCTTAAT+AGG + chr3_1:63224763-63224782 Msa0367540:intron 15.0%
!!! TTCTTTGAAATTAATTTCTT+AGG + chr3_1:63224794-63224813 Msa0367540:intron 15.0%
!!! AGTTAATTTATACCATTTTT+TGG + chr3_1:63224931-63224950 Msa0367540:intron 15.0%
!!! AGTAATAATAATTTGAAACA+TGG - chr3_1:63226259-63226278 None:intergenic 15.0%
!! AAATCTATGAAAATAGAAAA+TGG - chr3_1:63226367-63226386 None:intergenic 15.0%
!! TTATGAACTAATAGTTAAAT+TGG + chr3_1:63226817-63226836 Msa0367540:intron 15.0%
!! ATGTAAAATGTTAGAAAATA+AGG - chr3_1:63227326-63227345 None:intergenic 15.0%
!!! ATTTGATATTTTTATTTTCG+AGG + chr3_1:63227986-63228005 Msa0367540:three_prime_UTR 15.0%
!!! AATTACCAGATTTTAGATTT+TGG - chr3_1:63220988-63221007 None:intergenic 20.0%
!!! TAAAATCTGGTAATTTTTTG+TGG + chr3_1:63220993-63221012 Msa0367540:intron 20.0%
!!! ATTTGAAATTGAAGTTGAAT+TGG + chr3_1:63221117-63221136 Msa0367540:intron 20.0%
!!! TTTGAAATTGAAGTTGAATT+GGG + chr3_1:63221118-63221137 Msa0367540:intron 20.0%
!!! AAAATTTAAGTTGAATTGGT+AGG + chr3_1:63221227-63221246 Msa0367540:intron 20.0%
!! TTTAAATATTTATAACCGCA+TGG - chr3_1:63221383-63221402 None:intergenic 20.0%
!! AGTAAAATTTGACTGAATTA+GGG - chr3_1:63221410-63221429 None:intergenic 20.0%
!!! AATTTTACTCCTATTATGTT+AGG + chr3_1:63221421-63221440 Msa0367540:intron 20.0%
!!! ATTTTACTCCTATTATGTTA+GGG + chr3_1:63221422-63221441 Msa0367540:intron 20.0%
!! ATAGTAAGTGGTTAAATATA+GGG + chr3_1:63221454-63221473 Msa0367540:intron 20.0%
!! ATAGTAAGTTGTTAAAGTTT+AGG + chr3_1:63221486-63221505 Msa0367540:intron 20.0%
!! TAGTAAGTTGTTAAAGTTTA+GGG + chr3_1:63221487-63221506 Msa0367540:intron 20.0%
!!! TTTGAAATATTCATAACTTC+AGG + chr3_1:63221702-63221721 Msa0367540:intron 20.0%
!! TTGAAATATTCATAACTTCA+GGG + chr3_1:63221703-63221722 Msa0367540:intron 20.0%
!! ACAAATTGAATGTATTTCAA+TGG + chr3_1:63222085-63222104 Msa0367540:intron 20.0%
!! GAAAAAATTAACACAGTATA+CGG - chr3_1:63222526-63222545 None:intergenic 20.0%
!!! GCTATTTTATTTTTTTTGAC+AGG + chr3_1:63222581-63222600 Msa0367540:intron 20.0%
!! TTATAAATAATAAAGGCGAA+TGG - chr3_1:63223421-63223440 None:intergenic 20.0%
!! TATTTATAACTGGTAAATTG+AGG + chr3_1:63223432-63223451 Msa0367540:intron 20.0%
!! ATTTATAACTGGTAAATTGA+GGG + chr3_1:63223433-63223452 Msa0367540:intron 20.0%
!!! ATTGTCTATTTGAAACATAA+AGG - chr3_1:63223529-63223548 None:intergenic 20.0%
!! TTGTTGTATTGTGTTTATTT+GGG - chr3_1:63223568-63223587 None:intergenic 20.0%
!!! TTTGTTGTATTGTGTTTATT+TGG - chr3_1:63223569-63223588 None:intergenic 20.0%
!!! TAGTAAAAAAAAAGCTTTAG+TGG + chr3_1:63223697-63223716 Msa0367540:intron 20.0%
!! AAAAATCACAAAACATCTTT+AGG - chr3_1:63224347-63224366 None:intergenic 20.0%
!!! TCTATTCAAGCTTAATTTTA+AGG + chr3_1:63224548-63224567 Msa0367540:intron 20.0%
!! GAACAATCATTTATTTAACA+GGG - chr3_1:63224605-63224624 None:intergenic 20.0%
!! TGAACAATCATTTATTTAAC+AGG - chr3_1:63224606-63224625 None:intergenic 20.0%
!! AATGATTGTTCATGTTATTA+TGG + chr3_1:63224614-63224633 Msa0367540:intron 20.0%
!! CATAATTGTCGAATTTATAA+AGG + chr3_1:63224661-63224680 Msa0367540:intron 20.0%
!! AAAAAAGAAGCTAATATTAC+GGG - chr3_1:63225137-63225156 None:intergenic 20.0%
!! GAAAAAAGAAGCTAATATTA+CGG - chr3_1:63225138-63225157 None:intergenic 20.0%
!! AACATACTTATACAATATCA+TGG - chr3_1:63225276-63225295 None:intergenic 20.0%
!!! ATTGGAAATTTGTTCATTAT+GGG - chr3_1:63225580-63225599 None:intergenic 20.0%
!!! AAAATTTATGAGCTTTCTTT+TGG - chr3_1:63225691-63225710 None:intergenic 20.0%
!!! AAAAGAAAGCTCATAAATTT+TGG + chr3_1:63225690-63225709 Msa0367540:intron 20.0%
!!! AAAGAAAGCTCATAAATTTT+GGG + chr3_1:63225691-63225710 Msa0367540:intron 20.0%
!! TATATACGGCAAATTTATAT+GGG + chr3_1:63225938-63225957 Msa0367540:intron 20.0%
!! ATTAAAAGTGAAAACAGAAA+AGG - chr3_1:63226318-63226337 None:intergenic 20.0%
!!! CTATTTTCATAGATTTGTAT+AGG + chr3_1:63226371-63226390 Msa0367540:intron 20.0%
!! AAACACAAAATAATGTGAAA+AGG + chr3_1:63226502-63226521 Msa0367540:intron 20.0%
!!! TCATTTCCTTTTTTTTAAAC+TGG + chr3_1:63226731-63226750 Msa0367540:intron 20.0%
!!! TGCATTTTTCAGTAATATAT+TGG + chr3_1:63227039-63227058 Msa0367540:intron 20.0%
!!! ATTAAGGTCGAAATTTTTTA+AGG - chr3_1:63227178-63227197 None:intergenic 20.0%
!!! CTGATTTTTTTGTTTTGTTT+TGG + chr3_1:63227509-63227528 Msa0367540:intron 20.0%
!!! ATATACAATCTCAACTATTT+TGG - chr3_1:63227961-63227980 None:intergenic 20.0%
!!! AAATTTGTACTTCAGTTTTA+AGG + chr3_1:63228065-63228084 Msa0367540:three_prime_UTR 20.0%
! TAAAAGGGTTTGAAAAATTG+GGG - chr3_1:63220769-63220788 None:intergenic 25.0%
! GTAAAAGGGTTTGAAAAATT+GGG - chr3_1:63220770-63220789 None:intergenic 25.0%
! AGTAAAAGGGTTTGAAAAAT+TGG - chr3_1:63220771-63220790 None:intergenic 25.0%
! GTTTGTTTAATGTTGTGAAT+TGG + chr3_1:63221034-63221053 Msa0367540:intron 25.0%
! TTAGTAGAAACAGAATCATT+AGG + chr3_1:63221065-63221084 Msa0367540:intron 25.0%
!!! GAATTTGAGTTTTACTTACT+AGG + chr3_1:63221173-63221192 Msa0367540:intron 25.0%
! GAGTAAAATTTGACTGAATT+AGG - chr3_1:63221411-63221430 None:intergenic 25.0%
! AATTTAGTCCCTAACATAAT+AGG - chr3_1:63221433-63221452 None:intergenic 25.0%
! GATAGTAAGTGGTTAAATAT+AGG + chr3_1:63221453-63221472 Msa0367540:intron 25.0%
! ATAGCTAGTAGTTAAGTATA+GGG + chr3_1:63221520-63221539 Msa0367540:intron 25.0%
! TGAAATACATTCAATTTGTG+TGG - chr3_1:63222084-63222103 None:intergenic 25.0%
! TTCTACTAACTGTATGATAT+TGG + chr3_1:63222673-63222692 Msa0367540:intron 25.0%
! TCTACTAACTGTATGATATT+GGG + chr3_1:63222674-63222693 Msa0367540:intron 25.0%
! CAACTTCATGTAAAATTTGA+AGG - chr3_1:63222757-63222776 None:intergenic 25.0%
!!! GATTATTTTGTGTATTCATC+TGG - chr3_1:63222935-63222954 None:intergenic 25.0%
! TCATCCAACAAGAAAAAAAT+GGG - chr3_1:63223221-63223240 None:intergenic 25.0%
!!! ATCTGTGGTTTTAAGAATTT+AGG + chr3_1:63223295-63223314 Msa0367540:intron 25.0%
! TCGCCTTTATTATTTATAAC+TGG + chr3_1:63223422-63223441 Msa0367540:intron 25.0%
! AAGTAAAACGAACTGAAATT+TGG - chr3_1:63223612-63223631 None:intergenic 25.0%
! AAAGCTTAAAAATAATGCAG+TGG - chr3_1:63223873-63223892 None:intergenic 25.0%
! ATGTATAACTAGAAATCATG+TGG + chr3_1:63223969-63223988 Msa0367540:intron 25.0%
! AAATTTCACGCAAATTAGTA+GGG - chr3_1:63224163-63224182 None:intergenic 25.0%
! AAAATTTCACGCAAATTAGT+AGG - chr3_1:63224164-63224183 None:intergenic 25.0%
! ACAACAAAAAAATATGCATC+AGG - chr3_1:63224196-63224215 None:intergenic 25.0%
!!! GAATGCTTTTGAAAGATTTA+AGG + chr3_1:63224258-63224277 Msa0367540:CDS 25.0%
! ATAACAATGTACATTACTGA+AGG + chr3_1:63224384-63224403 Msa0367540:intron 25.0%
!! TTACATATCTGCTTTATTAC+CGG + chr3_1:63224502-63224521 Msa0367540:intron 25.0%
! ATTGTTCATGTTATTATGGT+TGG + chr3_1:63224618-63224637 Msa0367540:intron 25.0%
! GAGAATAAAATAATGCTTCT+AGG - chr3_1:63224891-63224910 None:intergenic 25.0%
! GTTACATGATAACCAAAAAA+TGG - chr3_1:63224946-63224965 None:intergenic 25.0%
!! AATGTGACCTTGTTTATATT+TGG + chr3_1:63225037-63225056 Msa0367540:intron 25.0%
!! ACCTTGTTTATATTTGGATA+GGG + chr3_1:63225043-63225062 Msa0367540:intron 25.0%
! TGATAATCATTAACTGCAAA+TGG - chr3_1:63225183-63225202 None:intergenic 25.0%
!!! AGGATAAGTTCTAAACTTTA+AGG + chr3_1:63225223-63225242 Msa0367540:intron 25.0%
! TTCAATATGAAAATGCAGAA+TGG - chr3_1:63225386-63225405 None:intergenic 25.0%
! TAAACGAAGTTAATTGGAAA+GGG - chr3_1:63225465-63225484 None:intergenic 25.0%
! TTTGTTCATTATGGGAAAAT+AGG - chr3_1:63225572-63225591 None:intergenic 25.0%
!! CATTGGAAATTTGTTCATTA+TGG - chr3_1:63225581-63225600 None:intergenic 25.0%
! AATTACATTTGAAGGTAGAA+GGG - chr3_1:63225752-63225771 None:intergenic 25.0%
! GTTAAGAGAATTACATTTGA+AGG - chr3_1:63225760-63225779 None:intergenic 25.0%
! TGTACAATACTGTCTATATA+CGG + chr3_1:63225924-63225943 Msa0367540:intron 25.0%
! CTATATACGGCAAATTTATA+TGG + chr3_1:63225937-63225956 Msa0367540:intron 25.0%
! AAAGCTTCCATTACATTATA+TGG - chr3_1:63225987-63226006 None:intergenic 25.0%
! TCTATGAAAATAGAAAATGG+AGG - chr3_1:63226364-63226383 None:intergenic 25.0%
! CTATTATCAAAGATTTCCAT+AGG + chr3_1:63226438-63226457 Msa0367540:intron 25.0%
!!! ATTCTTTTATTTGCTTCCTA+TGG - chr3_1:63226457-63226476 None:intergenic 25.0%
! AGTGAAAATAACAGATGAAA+AGG + chr3_1:63226544-63226563 Msa0367540:intron 25.0%
!! TCTACAAAAACTATTTTCTC+TGG + chr3_1:63226661-63226680 Msa0367540:intron 25.0%
! TATTGGTATATAGTATCCTT+TGG + chr3_1:63227056-63227075 Msa0367540:intron 25.0%
!!! TTTTGTTTCAGAAACAACAT+GGG + chr3_1:63227117-63227136 Msa0367540:intron 25.0%
!!! AATCTTTGAAATGACTTCTT+CGG - chr3_1:63227381-63227400 None:intergenic 25.0%
! AGAAGTCATTTCAAAGATTA+TGG + chr3_1:63227382-63227401 Msa0367540:CDS 25.0%
! TGGTATTTAGCAATATTCAT+TGG - chr3_1:63227555-63227574 None:intergenic 25.0%
! TGCTAAATACCAAAATGATA+AGG + chr3_1:63227563-63227582 Msa0367540:CDS 25.0%
! TAAATACCAAAATGATAAGG+AGG + chr3_1:63227566-63227585 Msa0367540:CDS 25.0%
! ACCAACAAACAAATTAATCA+AGG - chr3_1:63227742-63227761 None:intergenic 25.0%
!! AGTTTTGCCAATTTTTCTTA+TGG - chr3_1:63227823-63227842 None:intergenic 25.0%
! TTATTATCTGTATGTCACAA+TGG - chr3_1:63227888-63227907 None:intergenic 25.0%
! CATACAGATAATAATAACTG+TGG + chr3_1:63227894-63227913 Msa0367540:three_prime_UTR 25.0%
! TCTCACCAAAATCTAAAATC+TGG + chr3_1:63220980-63220999 Msa0367540:CDS 30.0%
TAGGTTATGATGTAGTTCAA+TGG + chr3_1:63221192-63221211 Msa0367540:intron 30.0%
GATAGCTAGTAGTTAAGTAT+AGG + chr3_1:63221519-63221538 Msa0367540:intron 30.0%
TTTATTTAACCTACTTGGGT+TGG - chr3_1:63221644-63221663 None:intergenic 30.0%
AACCCAAGTAGGTTAAATAA+AGG + chr3_1:63221643-63221662 Msa0367540:intron 30.0%
ACCCAAGTAGGTTAAATAAA+GGG + chr3_1:63221644-63221663 Msa0367540:intron 30.0%
! TCCCTTTATTTAACCTACTT+GGG - chr3_1:63221648-63221667 None:intergenic 30.0%
! TTTGACACTTTAAGAGAGTT+AGG + chr3_1:63221673-63221692 Msa0367540:intron 30.0%
! TTGACACTTTAAGAGAGTTA+GGG + chr3_1:63221674-63221693 Msa0367540:intron 30.0%
! CAAATTAGTCTGACTTTGTA+AGG - chr3_1:63221743-63221762 None:intergenic 30.0%
CTTACAAAGTCAGACTAATT+TGG + chr3_1:63221741-63221760 Msa0367540:intron 30.0%
! TATGCTATGTTGAGATTTTC+AGG + chr3_1:63221813-63221832 Msa0367540:intron 30.0%
! ATGCTATGTTGAGATTTTCA+GGG + chr3_1:63221814-63221833 Msa0367540:intron 30.0%
! TTGAAACTGATTGCATTTTG+AGG + chr3_1:63221963-63221982 Msa0367540:intron 30.0%
! GTGGAAATTTTCATTAATCG+CGG - chr3_1:63222065-63222084 None:intergenic 30.0%
! TTTGTTCACTACATTTCTAG+AGG + chr3_1:63222418-63222437 Msa0367540:intron 30.0%
! TTGTTCACTACATTTCTAGA+GGG + chr3_1:63222419-63222438 Msa0367540:intron 30.0%
TTGTCAAACCTTATCTTATG+TGG + chr3_1:63222783-63222802 Msa0367540:intron 30.0%
CAAAGAATCCACATAAGATA+AGG - chr3_1:63222794-63222813 None:intergenic 30.0%
CAAAATAATCCATTTGACAG+TGG + chr3_1:63222945-63222964 Msa0367540:CDS 30.0%
TTGAGTACTTGTAGAATTAG+CGG - chr3_1:63223033-63223052 None:intergenic 30.0%
CATCTTTAACATTGATGTCT+GGG - chr3_1:63223139-63223158 None:intergenic 30.0%
TCATCTTTAACATTGATGTC+TGG - chr3_1:63223140-63223159 None:intergenic 30.0%
!!! TGTACGTTACCTGATTTTTT+GGG - chr3_1:63223182-63223201 None:intergenic 30.0%
!!! TTGTACGTTACCTGATTTTT+TGG - chr3_1:63223183-63223202 None:intergenic 30.0%
GTCATCCAACAAGAAAAAAA+TGG - chr3_1:63223222-63223241 None:intergenic 30.0%
CTACATGTGCAATTTATAAG+TGG + chr3_1:63223247-63223266 Msa0367540:intron 30.0%
!!! AATAAAGGCGAATGGTTTTT+TGG - chr3_1:63223413-63223432 None:intergenic 30.0%
AAAGTGAGTGTAAATTAGCA+AGG - chr3_1:63223495-63223514 None:intergenic 30.0%
TCATGGCAATAAAGATTTCT+CGG - chr3_1:63223792-63223811 None:intergenic 30.0%
! AAACAGTTGATGCCTATTTA+GGG - chr3_1:63223935-63223954 None:intergenic 30.0%
! AAAACAGTTGATGCCTATTT+AGG - chr3_1:63223936-63223955 None:intergenic 30.0%
CTTCCATGCTTGTATTATTT+GGG + chr3_1:63223998-63224017 Msa0367540:intron 30.0%
AGCAAGGTTGAGAAAAAAAT+AGG - chr3_1:63224046-63224065 None:intergenic 30.0%
!!! AGTTTTTTATCCACCTGTAA+TGG + chr3_1:63224097-63224116 Msa0367540:intron 30.0%
AATTTCACGCAAATTAGTAG+GGG - chr3_1:63224162-63224181 None:intergenic 30.0%
AATCATTTATTTAACAGGGC+TGG - chr3_1:63224601-63224620 None:intergenic 30.0%
! ACTCATGTTTGATTTATGAC+AGG - chr3_1:63224864-63224883 None:intergenic 30.0%
TATTCTCCGATTGACATTAT+AGG + chr3_1:63224904-63224923 Msa0367540:intron 30.0%
! GACCTTGTTTATATTTGGAT+AGG + chr3_1:63225042-63225061 Msa0367540:intron 30.0%
TCCCTATCCAAATATAAACA+AGG - chr3_1:63225047-63225066 None:intergenic 30.0%
! TTTTCCATTTGTAGTGAATG+AGG + chr3_1:63225203-63225222 Msa0367540:intron 30.0%
TTATCCTCATTCACTACAAA+TGG - chr3_1:63225210-63225229 None:intergenic 30.0%
GTAAACGAAGTTAATTGGAA+AGG - chr3_1:63225466-63225485 None:intergenic 30.0%
TGGATGTAAACGAAGTTAAT+TGG - chr3_1:63225471-63225490 None:intergenic 30.0%
! AAACCTAACACGCTATATTT+TGG - chr3_1:63225491-63225510 None:intergenic 30.0%
TTTAACTGTTAACCATTGAG+TGG + chr3_1:63225522-63225541 Msa0367540:intron 30.0%
GAATTACATTTGAAGGTAGA+AGG - chr3_1:63225753-63225772 None:intergenic 30.0%
! TTATTAGTTTAGTACGTTCG+TGG + chr3_1:63225853-63225872 Msa0367540:intron 30.0%
ACAATGAATAAGCTCAAATG+TGG - chr3_1:63225896-63225915 None:intergenic 30.0%
ACCAGTACCATATAATGTAA+TGG + chr3_1:63225977-63225996 Msa0367540:intron 30.0%
TCCATTACATTATATGGTAC+TGG - chr3_1:63225981-63226000 None:intergenic 30.0%
ACATGACATGTTAATGAGTT+TGG + chr3_1:63226090-63226109 Msa0367540:intron 30.0%
ATGTTAATGAGTTTGGCAAA+TGG + chr3_1:63226097-63226116 Msa0367540:intron 30.0%
CACAAAATAATGTGAAAAGG+TGG + chr3_1:63226505-63226524 Msa0367540:intron 30.0%
!!! TTTTTTTTCTTCGCAAAGAC+AGG - chr3_1:63226570-63226589 None:intergenic 30.0%
TGCTTACATACATGATACAT+TGG + chr3_1:63226625-63226644 Msa0367540:intron 30.0%
! AAACTATTTTCTCTGGTGAA+TGG + chr3_1:63226668-63226687 Msa0367540:intron 30.0%
TGACAGCCAGTTTAAAAAAA+AGG - chr3_1:63226740-63226759 None:intergenic 30.0%
!!! TTTTTTTTAAACTGGCTGTC+AGG + chr3_1:63226739-63226758 Msa0367540:intron 30.0%
TCATAATTTCACCAAATGAG+AGG - chr3_1:63226803-63226822 None:intergenic 30.0%
! AATAGTTAAATTGGTAGTCC+TGG + chr3_1:63226826-63226845 Msa0367540:intron 30.0%
TATGAATCTCTATAAGCCAA+AGG - chr3_1:63227075-63227094 None:intergenic 30.0%
!! GTTTCTGAAACAAAAGATGT+AGG - chr3_1:63227112-63227131 None:intergenic 30.0%
!! CTTTTGTTTCAGAAACAACA+TGG + chr3_1:63227116-63227135 Msa0367540:intron 30.0%
GTTTAACATCAGGACTATTA+AGG - chr3_1:63227194-63227213 None:intergenic 30.0%
!! CCAAATTGTTGTTTAACATC+AGG - chr3_1:63227204-63227223 None:intergenic 30.0%
CCTGATGTTAAACAACAATT+TGG + chr3_1:63227201-63227220 Msa0367540:CDS 30.0%
! GATCAATTTGTTCATGCTTT+AGG + chr3_1:63227280-63227299 Msa0367540:intron 30.0%
GTTAGAAAATAAGGAGAATG+TGG - chr3_1:63227317-63227336 None:intergenic 30.0%
!! ATCTTTGAAATGACTTCTTC+GGG - chr3_1:63227380-63227399 None:intergenic 30.0%
AATGTCAGATTCAACATACA+GGG - chr3_1:63227645-63227664 None:intergenic 30.0%
AAATGTCAGATTCAACATAC+AGG - chr3_1:63227646-63227665 None:intergenic 30.0%
TTTCTTCCTCTTTACATTTC+AGG + chr3_1:63227663-63227682 Msa0367540:intron 30.0%
ACAAACAAATTAATCAAGGC+TGG - chr3_1:63227738-63227757 None:intergenic 30.0%
!! GCCTTGATTAATTTGTTTGT+TGG + chr3_1:63227738-63227757 Msa0367540:exon 30.0%
AGTACAAATTTGCGAAGTTT+AGG - chr3_1:63228056-63228075 None:intergenic 30.0%
TGCTTATGAAAGATCATATG+AGG - chr3_1:63228115-63228134 None:intergenic 30.0%
! AGTTTGAGTACTGTTGTTTG+CGG - chr3_1:63220709-63220728 None:intergenic 35.0%
ATCAACGAAACGGAGTAAAA+GGG - chr3_1:63220784-63220803 None:intergenic 35.0%
AATCAACGAAACGGAGTAAA+AGG - chr3_1:63220785-63220804 None:intergenic 35.0%
!!! TTACTCCGTTTCGTTGATTT+TGG + chr3_1:63220786-63220805 Msa0367540:five_prime_UTR 35.0%
!!! TACTCCGTTTCGTTGATTTT+GGG + chr3_1:63220787-63220806 Msa0367540:five_prime_UTR 35.0%
!! TTGATTTTGGGGGTTTCAAA+TGG + chr3_1:63220799-63220818 Msa0367540:exon 35.0%
!!! TCTTGTGAAGAGGTTTTTTG+AGG - chr3_1:63220882-63220901 None:intergenic 35.0%
! AGAAGAAAGCCTTTCACTTT+TGG + chr3_1:63220899-63220918 Msa0367540:CDS 35.0%
!! GAAGAAAGCCTTTCACTTTT+GGG + chr3_1:63220900-63220919 Msa0367540:CDS 35.0%
! GGGACTAAATTGATAGTAAG+TGG + chr3_1:63221442-63221461 Msa0367540:intron 35.0%
TAGTAGTTAAGTATAGGGAC+TGG + chr3_1:63221525-63221544 Msa0367540:intron 35.0%
! GTCCCTTTATTTAACCTACT+TGG - chr3_1:63221649-63221668 None:intergenic 35.0%
! CTCTCTTAAAGTGTCAAAGT+TGG - chr3_1:63221671-63221690 None:intergenic 35.0%
ACAAAGTCAGACTAATTTGG+TGG + chr3_1:63221744-63221763 Msa0367540:intron 35.0%
! TGCTATGTTGAGATTTTCAG+GGG + chr3_1:63221815-63221834 Msa0367540:intron 35.0%
CACTTTAGACTTTACAGAGA+CGG - chr3_1:63221914-63221933 None:intergenic 35.0%
AGTCATAAGTAACACATGCT+GGG + chr3_1:63222127-63222146 Msa0367540:intron 35.0%
AGTCAAGAAACAACATCAGT+TGG + chr3_1:63222207-63222226 Msa0367540:CDS 35.0%
! TTTTACACTTGTCAACTACC+TGG + chr3_1:63222315-63222334 Msa0367540:intron 35.0%
! GTTTTCTGCACTATTTTCAG+TGG + chr3_1:63222474-63222493 Msa0367540:CDS 35.0%
TGAGTACTTGTAGAATTAGC+GGG - chr3_1:63223032-63223051 None:intergenic 35.0%
AAGAGTGAACCCAAAAAATC+AGG + chr3_1:63223170-63223189 Msa0367540:CDS 35.0%
!!! GACTCCCATTTTTTTCTTGT+TGG + chr3_1:63223214-63223233 Msa0367540:intron 35.0%
AAAACCACAGATACATCTCT+TGG - chr3_1:63223287-63223306 None:intergenic 35.0%
!!! GTTTTTTGGTCCAATGGAAA+AGG - chr3_1:63223399-63223418 None:intergenic 35.0%
TGAGTGTAAATTAGCAAGGT+GGG - chr3_1:63223491-63223510 None:intergenic 35.0%
AAAATTAGGAGTGACAACAC+AGG + chr3_1:63223659-63223678 Msa0367540:intron 35.0%
TAGGATGTTCTCATTGAACA+TGG - chr3_1:63223753-63223772 None:intergenic 35.0%
GCTTCCATGCTTGTATTATT+TGG + chr3_1:63223997-63224016 Msa0367540:intron 35.0%
CATCCCAAATAATACAAGCA+TGG - chr3_1:63224004-63224023 None:intergenic 35.0%
TACAGGTGGATAAAAAACTG+TGG - chr3_1:63224096-63224115 None:intergenic 35.0%
TAACAGTAAGTTGCCATTAC+AGG - chr3_1:63224113-63224132 None:intergenic 35.0%
TTACTGAAGGCTTCTCAAAA+TGG + chr3_1:63224397-63224416 Msa0367540:intron 35.0%
TAAGCTTGAATAGATGTAGC+AGG - chr3_1:63224542-63224561 None:intergenic 35.0%
ATGTAAACTTACCATTGTCC+TGG + chr3_1:63224687-63224706 Msa0367540:intron 35.0%
!! TCCTGGTACTTTTGATGATT+TGG + chr3_1:63224704-63224723 Msa0367540:intron 35.0%
!! ACCAAATCATCAAAAGTACC+AGG - chr3_1:63224708-63224727 None:intergenic 35.0%
CCTAATCTATATCCTATCAC+AGG - chr3_1:63224731-63224750 None:intergenic 35.0%
CCTGTGATAGGATATAGATT+AGG + chr3_1:63224728-63224747 Msa0367540:intron 35.0%
! AAATCTCTAATCAGGGTGTT+AGG - chr3_1:63224822-63224841 None:intergenic 35.0%
GGACTGAAAATCTCTAATCA+GGG - chr3_1:63224829-63224848 None:intergenic 35.0%
! ATTAGAGATTTTCAGTCCCT+GGG + chr3_1:63224831-63224850 Msa0367540:intron 35.0%
! GATAGGGAAATCAGTCTTAT+CGG + chr3_1:63225059-63225078 Msa0367540:intron 35.0%
!! GGATGCTTTAGAGAAAATGA+TGG + chr3_1:63225083-63225102 Msa0367540:CDS 35.0%
!! TGCTTTAGAGAAAATGATGG+AGG + chr3_1:63225086-63225105 Msa0367540:CDS 35.0%
TACTGTCATCAGCAATTCTA+AGG - chr3_1:63225310-63225329 None:intergenic 35.0%
! AGTCCAATGTAGAGTATCAT+AGG - chr3_1:63225352-63225371 None:intergenic 35.0%
ATGATACTCTACATTGGACT+TGG + chr3_1:63225352-63225371 Msa0367540:intron 35.0%
!!! AACAGAAGCATTGGTTTTTG+TGG - chr3_1:63225433-63225452 None:intergenic 35.0%
! AAGAGTTCAAACAGAAGCAT+TGG - chr3_1:63225442-63225461 None:intergenic 35.0%
CATCCAAAATATAGCGTGTT+AGG + chr3_1:63225485-63225504 Msa0367540:intron 35.0%
TTATGGGAAAATAGGAACCA+GGG - chr3_1:63225564-63225583 None:intergenic 35.0%
ATTATGGGAAAATAGGAACC+AGG - chr3_1:63225565-63225584 None:intergenic 35.0%
! GAGCTTTCTTTTGGATAACA+AGG - chr3_1:63225682-63225701 None:intergenic 35.0%
! CTTAACAATTTTCTTGCCTC+TGG + chr3_1:63225774-63225793 Msa0367540:intron 35.0%
TTAACATTGTGTAGAACCAG+AGG - chr3_1:63225793-63225812 None:intergenic 35.0%
!!! TACTGTTGCTGCTTTTGATA+GGG + chr3_1:63226130-63226149 Msa0367540:intron 35.0%
! GACTCTGAAGATACAATACA+AGG - chr3_1:63226207-63226226 None:intergenic 35.0%
ATGGAGCATAAGATCATTGA+TGG - chr3_1:63226240-63226259 None:intergenic 35.0%
AATGTGAAAAGGTGGTACAT+AGG + chr3_1:63226513-63226532 Msa0367540:intron 35.0%
TGGTGAATGGAAAAATTCTG+AGG + chr3_1:63226681-63226700 Msa0367540:intron 35.0%
ATTGGACAGATGCATAAGAT+TGG - chr3_1:63226861-63226880 None:intergenic 35.0%
TAGGTTACATGGAAGGTTAT+TGG - chr3_1:63226879-63226898 None:intergenic 35.0%
TTAAGGTTAGGTTACATGGA+AGG - chr3_1:63226886-63226905 None:intergenic 35.0%
AAAAGATGTAGGAGAAAGAG+TGG - chr3_1:63227101-63227120 None:intergenic 35.0%
ATCTCTTCATCAGACCAAAT+TGG + chr3_1:63227347-63227366 Msa0367540:intron 35.0%
!! TCTAGGATTTTGAAAAGCCA+TGG - chr3_1:63227423-63227442 None:intergenic 35.0%
ACCAAAATGATAAGGAGGTA+TGG + chr3_1:63227571-63227590 Msa0367540:intron 35.0%
! ACCATACCTCCTTATCATTT+TGG - chr3_1:63227575-63227594 None:intergenic 35.0%
ATGTCAGATTCAACATACAG+GGG - chr3_1:63227644-63227663 None:intergenic 35.0%
TGTCTCGCCATAAGAAAAAT+TGG + chr3_1:63227813-63227832 Msa0367540:three_prime_UTR 35.0%
ATTTGCGAAGTTTAGGAACT+CGG - chr3_1:63228049-63228068 None:intergenic 35.0%
GCGTTCACATTCATTTATGA+AGG - chr3_1:63228093-63228112 None:intergenic 35.0%
!!! ACTCCGTTTCGTTGATTTTG+GGG + chr3_1:63220788-63220807 Msa0367540:five_prime_UTR 40.0%
AACCCCCAAAATCAACGAAA+CGG - chr3_1:63220794-63220813 None:intergenic 40.0%
!!! AGGTTTTGGGGAAGAAACAA+GGG - chr3_1:63220840-63220859 None:intergenic 40.0%
!!! AAGGTTTTGGGGAAGAAACA+AGG - chr3_1:63220841-63220860 None:intergenic 40.0%
! TTCCCCAAAACCTTTGCTTT+TGG + chr3_1:63220847-63220866 Msa0367540:CDS 40.0%
!! TCCCCAAAACCTTTGCTTTT+GGG + chr3_1:63220848-63220867 Msa0367540:CDS 40.0%
! TCCCAAAAGCAAAGGTTTTG+GGG - chr3_1:63220852-63220871 None:intergenic 40.0%
! GTCCCAAAAGCAAAGGTTTT+GGG - chr3_1:63220853-63220872 None:intergenic 40.0%
! TGTCCCAAAAGCAAAGGTTT+TGG - chr3_1:63220854-63220873 None:intergenic 40.0%
GAAGAATGTCCCAAAAGCAA+AGG - chr3_1:63220860-63220879 None:intergenic 40.0%
AAGGCTTTCTTCTTGTGAAG+AGG - chr3_1:63220892-63220911 None:intergenic 40.0%
GTGAATCTCCCAAAAGTGAA+AGG - chr3_1:63220911-63220930 None:intergenic 40.0%
TTCTTCCTCTCATGTTACCA+GGG + chr3_1:63220946-63220965 Msa0367540:CDS 40.0%
TTGAACCCAGTTGCTCAATT+TGG + chr3_1:63221278-63221297 Msa0367540:intron 40.0%
AACCACCAAATTGAGCAACT+GGG - chr3_1:63221286-63221305 None:intergenic 40.0%
! TACAAAGTCGCGTACGATTT+TGG - chr3_1:63221355-63221374 None:intergenic 40.0%
AATCGTACGCGACTTTGTAT+AGG + chr3_1:63221356-63221375 Msa0367540:intron 40.0%
! GGGGTTTTTGTGTTCATGAT+TGG + chr3_1:63221834-63221853 Msa0367540:intron 40.0%
CGTCTCTGTAAAGTCTAAAG+TGG + chr3_1:63221912-63221931 Msa0367540:intron 40.0%
TTAATCGCGGAACAAGAGAA+GGG - chr3_1:63222052-63222071 None:intergenic 40.0%
ATTAATCGCGGAACAAGAGA+AGG - chr3_1:63222053-63222072 None:intergenic 40.0%
GAGTCATAAGTAACACATGC+TGG + chr3_1:63222126-63222145 Msa0367540:intron 40.0%
TGTGATTACACAGTCGAAGA+TGG - chr3_1:63222258-63222277 None:intergenic 40.0%
!!! TTTTGGATTGGTGTTGGTGT+TGG + chr3_1:63222451-63222470 Msa0367540:CDS 40.0%
!! TTTGGATTGGTGTTGGTGTT+GGG + chr3_1:63222452-63222471 Msa0367540:CDS 40.0%
ACAGGTAGCTTCAAGATTGA+AGG + chr3_1:63222599-63222618 Msa0367540:intron 40.0%
GTGAGTTCCACTTTATTGCA+AGG + chr3_1:63222621-63222640 Msa0367540:intron 40.0%
TTCCACTTTATTGCAAGGCT+TGG + chr3_1:63222626-63222645 Msa0367540:intron 40.0%
TCCACTTTATTGCAAGGCTT+GGG + chr3_1:63222627-63222646 Msa0367540:intron 40.0%
AACCACTCCTTCACTTGATA+TGG - chr3_1:63222702-63222721 None:intergenic 40.0%
ACAAGCTTTCAAGACCATGA+TGG + chr3_1:63222908-63222927 Msa0367540:CDS 40.0%
CAAGCTTTCAAGACCATGAT+GGG + chr3_1:63222909-63222928 Msa0367540:CDS 40.0%
!! GATGCTTCTACTTTTGTTGC+AGG - chr3_1:63223110-63223129 None:intergenic 40.0%
!!! CGAATGGTTTTTTGGTCCAA+TGG - chr3_1:63223405-63223424 None:intergenic 40.0%
GTGAGTGTAAATTAGCAAGG+TGG - chr3_1:63223492-63223511 None:intergenic 40.0%
ATAAAGATTTCTCGGTGGGT+GGG - chr3_1:63223784-63223803 None:intergenic 40.0%
AATAAAGATTTCTCGGTGGG+TGG - chr3_1:63223785-63223804 None:intergenic 40.0%
GGCAATAAAGATTTCTCGGT+GGG - chr3_1:63223788-63223807 None:intergenic 40.0%
TGGCAATAAAGATTTCTCGG+TGG - chr3_1:63223789-63223808 None:intergenic 40.0%
AAGCTGCGAGATAGTATTCA+TGG - chr3_1:63223809-63223828 None:intergenic 40.0%
! TCTAGTTTGTCACAGGATAC+TGG - chr3_1:63223905-63223924 None:intergenic 40.0%
TGACGCATCAAGTTCATTCA+AGG + chr3_1:63224285-63224304 Msa0367540:CDS 40.0%
AATCGCCAAAACCTTGGTTA+GGG - chr3_1:63224429-63224448 None:intergenic 40.0%
!! CATCAAAAGTACCAGGACAA+TGG - chr3_1:63224701-63224720 None:intergenic 40.0%
!! TGATGATTTGGTCCTGTGAT+AGG + chr3_1:63224716-63224735 Msa0367540:intron 40.0%
GGGACTGAAAATCTCTAATC+AGG - chr3_1:63224830-63224849 None:intergenic 40.0%
! GATTAGAGATTTTCAGTCCC+TGG + chr3_1:63224830-63224849 Msa0367540:intron 40.0%
TATGACAGGATTTCAACCCA+GGG - chr3_1:63224850-63224869 None:intergenic 40.0%
TTATGACAGGATTTCAACCC+AGG - chr3_1:63224851-63224870 None:intergenic 40.0%
CTGCAGCCTATAATGTCAAT+CGG - chr3_1:63224913-63224932 None:intergenic 40.0%
GTCATAAATGAGCTGCTGTA+TGG + chr3_1:63224997-63225016 Msa0367540:intron 40.0%
AAACCATCTTCTGCACAGTT+GGG - chr3_1:63225113-63225132 None:intergenic 40.0%
TAAACCATCTTCTGCACAGT+TGG - chr3_1:63225114-63225133 None:intergenic 40.0%
! TCATAGGCACTGTTTGTACT+TGG - chr3_1:63225336-63225355 None:intergenic 40.0%
GTGCCTATGATACTCTACAT+TGG + chr3_1:63225346-63225365 Msa0367540:intron 40.0%
TACAAACATGCTCCACTCAA+TGG - chr3_1:63225537-63225556 None:intergenic 40.0%
TCGTGTTTGTCTCTTTCAAC+TGG + chr3_1:63226051-63226070 Msa0367540:intron 40.0%
!!! GTACTGTTGCTGCTTTTGAT+AGG + chr3_1:63226129-63226148 Msa0367540:intron 40.0%
! TCAAGTTGTTGACGATACTC+AGG - chr3_1:63226168-63226187 None:intergenic 40.0%
!!! AACGAAAGGCTCTAAGCTTT+TGG + chr3_1:63226597-63226616 Msa0367540:intron 40.0%
!! GAATGGAAAAATTCTGAGGC+AGG + chr3_1:63226685-63226704 Msa0367540:intron 40.0%
TTCAGACACTCACAATACAC+TGG + chr3_1:63226764-63226783 Msa0367540:intron 40.0%
CCAAATGAGAGGCTAATAAC+TGG - chr3_1:63226792-63226811 None:intergenic 40.0%
! CCAGTTATTAGCCTCTCATT+TGG + chr3_1:63226789-63226808 Msa0367540:intron 40.0%
! AGTTAAATTGGTAGTCCTGG+AGG + chr3_1:63226829-63226848 Msa0367540:intron 40.0%
! TAAGATTGGTCAATTCCTCC+AGG - chr3_1:63226847-63226866 None:intergenic 40.0%
CCATGTAACCTAACCTTAAG+CGG + chr3_1:63226887-63226906 Msa0367540:intron 40.0%
CATGTAACCTAACCTTAAGC+GGG + chr3_1:63226888-63226907 Msa0367540:intron 40.0%
ATGTAACCTAACCTTAAGCG+GGG + chr3_1:63226889-63226908 Msa0367540:intron 40.0%
! ACATTTTTCTGCGATGCATC+AGG - chr3_1:63226959-63226978 None:intergenic 40.0%
GTCATTCTATGTGCTACAGT+TGG + chr3_1:63227007-63227026 Msa0367540:intron 40.0%
TGTTTCAGAAACAACATGGG+TGG + chr3_1:63227120-63227139 Msa0367540:intron 40.0%
GACATGTCGTGTAAAATGTG+AGG - chr3_1:63227246-63227265 None:intergenic 40.0%
!!! CACGACATGTCTTTTTTGAG+AGG + chr3_1:63227255-63227274 Msa0367540:intron 40.0%
!!! GACATGTCTTTTTTGAGAGG+TGG + chr3_1:63227258-63227277 Msa0367540:intron 40.0%
ATGATAGCTGCTTGAACTCT+AGG - chr3_1:63227440-63227459 None:intergenic 40.0%
TAGAGTTCAAGCAGCTATCA+TGG + chr3_1:63227439-63227458 Msa0367540:CDS 40.0%
TGTCAGATTCAACATACAGG+GGG - chr3_1:63227643-63227662 None:intergenic 40.0%
CCATGACCTGAAATGTAAAG+AGG - chr3_1:63227672-63227691 None:intergenic 40.0%
! CCTCTTTACATTTCAGGTCA+TGG + chr3_1:63227669-63227688 Msa0367540:intron 40.0%
AAAATATCTGAGCTCTTCCC+CGG + chr3_1:63227703-63227722 Msa0367540:CDS 40.0%
ATCTCATTGCTCGTCACTAA+AGG - chr3_1:63227783-63227802 None:intergenic 40.0%
TGCTCATGACTGTATACTAC+AGG + chr3_1:63227847-63227866 Msa0367540:three_prime_UTR 40.0%
! GAGTACTGTTGTTTGCGGTA+GGG - chr3_1:63220704-63220723 None:intergenic 45.0%
! TGAGTACTGTTGTTTGCGGT+AGG - chr3_1:63220705-63220724 None:intergenic 45.0%
GAAGAGAAGAGACTTGAGAG+TGG - chr3_1:63220741-63220760 None:intergenic 45.0%
!!! CTCCGTTTCGTTGATTTTGG+GGG + chr3_1:63220789-63220808 Msa0367540:five_prime_UTR 45.0%
CTTCTTCCTCTCATGTTACC+AGG + chr3_1:63220945-63220964 Msa0367540:CDS 45.0%
GTGAGATTTAGAAGCAACCC+TGG - chr3_1:63220966-63220985 None:intergenic 45.0%
AACCCAGTTGCTCAATTTGG+TGG + chr3_1:63221281-63221300 Msa0367540:intron 45.0%
GAACCACCAAATTGAGCAAC+TGG - chr3_1:63221287-63221306 None:intergenic 45.0%
! AAAGTCGCGTACGATTTTGG+TGG - chr3_1:63221352-63221371 None:intergenic 45.0%
CGACTTTGTATAGGTCCATG+CGG + chr3_1:63221365-63221384 Msa0367540:intron 45.0%
AGATGGAGGTGGTGATAACT+GGG - chr3_1:63222241-63222260 None:intergenic 45.0%
AAGATGGAGGTGGTGATAAC+TGG - chr3_1:63222242-63222261 None:intergenic 45.0%
GATTACACAGTCGAAGATGG+AGG - chr3_1:63222255-63222274 None:intergenic 45.0%
ACACTTGTCAACTACCTGGA+AGG + chr3_1:63222319-63222338 Msa0367540:intron 45.0%
CACTTGTCAACTACCTGGAA+GGG + chr3_1:63222320-63222339 Msa0367540:intron 45.0%
TTGACAATCATCTCCCTTCC+AGG - chr3_1:63222336-63222355 None:intergenic 45.0%
CCAACACCAATCCAAAAGAG+CGG - chr3_1:63222448-63222467 None:intergenic 45.0%
ACCCAAGCCTTGCAATAAAG+TGG - chr3_1:63222631-63222650 None:intergenic 45.0%
TTGGGAGCCATATCAAGTGA+AGG + chr3_1:63222692-63222711 Msa0367540:intron 45.0%
AGCCATATCAAGTGAAGGAG+TGG + chr3_1:63222697-63222716 Msa0367540:intron 45.0%
TGTATTCATCTGGCCCATCA+TGG - chr3_1:63222925-63222944 None:intergenic 45.0%
!! GAAAAGGCACCACTGTCAAA+TGG - chr3_1:63222957-63222976 None:intergenic 45.0%
AGGTATGTCTACTGTGACAG+TGG - chr3_1:63223090-63223109 None:intergenic 45.0%
!! ACAAAAGTAGAAGCATCCCC+AGG + chr3_1:63223113-63223132 Msa0367540:CDS 45.0%
TAACATTGATGTCTGGGCCT+GGG - chr3_1:63223133-63223152 None:intergenic 45.0%
TTAACATTGATGTCTGGGCC+TGG - chr3_1:63223134-63223153 None:intergenic 45.0%
GTAACGTACAATCTCTGCTC+AGG + chr3_1:63223192-63223211 Msa0367540:intron 45.0%
TCCACCAAGAGATGTATCTG+TGG + chr3_1:63223280-63223299 Msa0367540:intron 45.0%
ACCACAGATACATCTCTTGG+TGG - chr3_1:63223284-63223303 None:intergenic 45.0%
AGTGACAACACAGGCTTAAG+TGG + chr3_1:63223668-63223687 Msa0367540:intron 45.0%
! AGCACTCTCTAGTTTGTCAC+AGG - chr3_1:63223912-63223931 None:intergenic 45.0%
!! CTAGAGAGTGCTCCCTAAAT+AGG + chr3_1:63223920-63223939 Msa0367540:intron 45.0%
! AGCATGATAGTGTGCAAGCA+AGG - chr3_1:63224062-63224081 None:intergenic 45.0%
TTGCTTGCACACTATCATGC+TGG + chr3_1:63224061-63224080 Msa0367540:intron 45.0%
CAGTAAGTTGCCATTACAGG+TGG - chr3_1:63224110-63224129 None:intergenic 45.0%
TTCTGCTGCACAGTTTCTTC+TGG - chr3_1:63224241-63224260 None:intergenic 45.0%
ATCGCCAAAACCTTGGTTAG+GGG - chr3_1:63224428-63224447 None:intergenic 45.0%
GAATCGCCAAAACCTTGGTT+AGG - chr3_1:63224430-63224449 None:intergenic 45.0%
TTACGTGCAGATTGAGAACC+CGG - chr3_1:63224454-63224473 None:intergenic 45.0%
TAGATGTAGCAGGCTACACA+GGG - chr3_1:63224532-63224551 None:intergenic 45.0%
ATAGATGTAGCAGGCTACAC+AGG - chr3_1:63224533-63224552 None:intergenic 45.0%
! AGGGAAATCAGTCTTATCGG+TGG + chr3_1:63225062-63225081 Msa0367540:intron 45.0%
GACTGTGTCGCAAAACACAT+TGG - chr3_1:63225598-63225617 None:intergenic 45.0%
CTGTTGCAGCTATTTACCTG+AGG + chr3_1:63225716-63225735 Msa0367540:intron 45.0%
GCTATTTACCTGAGGAGATG+AGG + chr3_1:63225724-63225743 Msa0367540:intron 45.0%
CCGCTTAAGGTTAGGTTACA+TGG - chr3_1:63226890-63226909 None:intergenic 45.0%
TGTAACCTAACCTTAAGCGG+GGG + chr3_1:63226890-63226909 Msa0367540:intron 45.0%
TGAATGGGACAGTCGAATGA+TGG + chr3_1:63227149-63227168 Msa0367540:CDS 45.0%
CTTCGGGAGAAAGTCCAATT+TGG - chr3_1:63227364-63227383 None:intergenic 45.0%
TGAAAAGCCATGGCAACATC+AGG - chr3_1:63227413-63227432 None:intergenic 45.0%
AAATATCTGAGCTCTTCCCC+GGG + chr3_1:63227704-63227723 Msa0367540:CDS 45.0%
GACTGTATACTACAGGCTCA+TGG + chr3_1:63227854-63227873 Msa0367540:three_prime_UTR 45.0%
AGACTTGAGAGTGGCGTAGT+GGG - chr3_1:63220732-63220751 None:intergenic 50.0%
AGCAACCCTGGTAACATGAG+AGG - chr3_1:63220954-63220973 None:intergenic 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG - chr3_1:63221624-63221643 None:intergenic 50.0%
!! TTGGCCTAGTGGTATTGGCT+TGG - chr3_1:63221625-63221644 None:intergenic 50.0%
!! TTGGGTTGGCCTAGTGGTAT+TGG - chr3_1:63221630-63221649 None:intergenic 50.0%
ACATGCTGGGAATACAGTGC+AGG + chr3_1:63222140-63222159 Msa0367540:intron 50.0%
CATGCTGGGAATACAGTGCA+GGG + chr3_1:63222141-63222160 Msa0367540:intron 50.0%
ATGCTGGGAATACAGTGCAG+GGG + chr3_1:63222142-63222161 Msa0367540:intron 50.0%
ATGGAGGTGGTGATAACTGG+GGG - chr3_1:63222239-63222258 None:intergenic 50.0%
GATGGAGGTGGTGATAACTG+GGG - chr3_1:63222240-63222259 None:intergenic 50.0%
TACACAGTCGAAGATGGAGG+TGG - chr3_1:63222252-63222271 None:intergenic 50.0%
!!! CCGCTCTTTTGGATTGGTGT+TGG + chr3_1:63222445-63222464 Msa0367540:CDS 50.0%
TGCAAGGCTTGGGTGTAAAC+TGG + chr3_1:63222637-63222656 Msa0367540:intron 50.0%
GAAAGGAGATCCAGGGGAAA+AGG - chr3_1:63222973-63222992 None:intergenic 50.0%
AAAGGGGAAAGGAGATCCAG+GGG - chr3_1:63222979-63222998 None:intergenic 50.0%
GAAAGGGGAAAGGAGATCCA+GGG - chr3_1:63222980-63222999 None:intergenic 50.0%
!! GTAGGCATTGGAAAGGGGAA+AGG - chr3_1:63222990-63223009 None:intergenic 50.0%
!! GTGGTGTAGGCATTGGAAAG+GGG - chr3_1:63222995-63223014 None:intergenic 50.0%
!! GGTGGTGTAGGCATTGGAAA+GGG - chr3_1:63222996-63223015 None:intergenic 50.0%
!! TGGTGGTGTAGGCATTGGAA+AGG - chr3_1:63222997-63223016 None:intergenic 50.0%
TTTCCAATGCCTACACCACC+AGG + chr3_1:63222996-63223015 Msa0367540:CDS 50.0%
TTCCAATGCCTACACCACCA+GGG + chr3_1:63222997-63223016 Msa0367540:CDS 50.0%
AACATTGATGTCTGGGCCTG+GGG - chr3_1:63223132-63223151 None:intergenic 50.0%
AATTAGCAGCCCTCGTGTGA+GGG - chr3_1:63223334-63223353 None:intergenic 50.0%
AAATTAGCAGCCCTCGTGTG+AGG - chr3_1:63223335-63223354 None:intergenic 50.0%
! CAAGTGCGCACCTTTTCCAT+TGG + chr3_1:63223386-63223405 Msa0367540:intron 50.0%
!! CGGTGGGTGGGTTTACTTTT+AGG - chr3_1:63223772-63223791 None:intergenic 50.0%
TCGCCAAAACCTTGGTTAGG+GGG - chr3_1:63224427-63224446 None:intergenic 50.0%
!! CCAAGGTTTTGGCGATTCTC+CGG + chr3_1:63224432-63224451 Msa0367540:CDS 50.0%
!! CAAGGTTTTGGCGATTCTCC+GGG + chr3_1:63224433-63224452 Msa0367540:CDS 50.0%
GAGCATGTTTGTACTCTCCC+TGG + chr3_1:63225544-63225563 Msa0367540:intron 50.0%
GTAACCTAACCTTAAGCGGG+GGG + chr3_1:63226891-63226910 Msa0367540:intron 50.0%
TAACCTAACCTTAAGCGGGG+GGG + chr3_1:63226892-63226911 Msa0367540:intron 50.0%
!! ACATGGGTGGAAGCACTGAA+TGG + chr3_1:63227133-63227152 Msa0367540:CDS 50.0%
!! CATGGGTGGAAGCACTGAAT+GGG + chr3_1:63227134-63227153 Msa0367540:CDS 50.0%
AGCCATGGCAACATCAGGAT+TGG - chr3_1:63227408-63227427 None:intergenic 50.0%
AATATCTGAGCTCTTCCCCG+GGG + chr3_1:63227705-63227724 Msa0367540:CDS 50.0%
GAGACTTGAGAGTGGCGTAG+TGG - chr3_1:63220733-63220752 None:intergenic 55.0%
!! GTGGTATTGGCTTGGGACCT+TGG - chr3_1:63221617-63221636 None:intergenic 55.0%
GGTCCCAAGCCAATACCACT+AGG + chr3_1:63221618-63221637 Msa0367540:intron 55.0%
ACCACTAGGCCAACCCAAGT+AGG + chr3_1:63221632-63221651 Msa0367540:intron 55.0%
!! ACCTACTTGGGTTGGCCTAG+TGG - chr3_1:63221636-63221655 None:intergenic 55.0%
GGAAAGGGGAAAGGAGATCC+AGG - chr3_1:63222981-63223000 None:intergenic 55.0%
ATTAGCAGCCCTCGTGTGAG+GGG - chr3_1:63223333-63223352 None:intergenic 55.0%
AATGGAGCTCCCCCTAACCA+AGG + chr3_1:63224415-63224434 Msa0367540:CDS 55.0%
! GCTCCCCCTAACCAAGGTTT+TGG + chr3_1:63224421-63224440 Msa0367540:CDS 55.0%
CCGGAGAATCGCCAAAACCT+TGG - chr3_1:63224435-63224454 None:intergenic 55.0%
! GCAGGCTACACAGGGTTTTC+CGG - chr3_1:63224524-63224543 None:intergenic 55.0%
GGACCCAACTGTGCAGAAGA+TGG + chr3_1:63225107-63225126 Msa0367540:CDS 55.0%
GAAGGGTTCCTCATCTCCTC+AGG - chr3_1:63225735-63225754 None:intergenic 55.0%
AACCTAACCTTAAGCGGGGG+GGG + chr3_1:63226893-63226912 Msa0367540:intron 55.0%
GGCCAATCCTGATGTTGCCA+TGG + chr3_1:63227403-63227422 Msa0367540:CDS 55.0%
!! TCTTCAGGGGGGGGCTAGTT+TGG - chr3_1:63221582-63221601 None:intergenic 60.0%
AGCGTGCTCCTCTCTTCAGG+GGG - chr3_1:63221594-63221613 None:intergenic 60.0%
GAGCGTGCTCCTCTCTTCAG+GGG - chr3_1:63221595-63221614 None:intergenic 60.0%
GGAGCGTGCTCCTCTCTTCA+GGG - chr3_1:63221596-63221615 None:intergenic 60.0%
TGGAGCGTGCTCCTCTCTTC+AGG - chr3_1:63221597-63221616 None:intergenic 60.0%
! GAAGAGAGGAGCACGCTCCA+AGG + chr3_1:63221597-63221616 Msa0367540:intron 60.0%
! CTAGAGGGTCGCCGCTCTTT+TGG + chr3_1:63222434-63222453 Msa0367540:intron 60.0%
! GGGTCGCCGCTCTTTTGGAT+TGG + chr3_1:63222439-63222458 Msa0367540:CDS 60.0%
! GACAGTGGTGCCTTTTCCCC+TGG + chr3_1:63222960-63222979 Msa0367540:CDS 60.0%
! GACCCTGGTGGTGTAGGCAT+TGG - chr3_1:63223002-63223021 None:intergenic 60.0%
TTAGCAGCCCTCGTGTGAGG+GGG - chr3_1:63223332-63223351 None:intergenic 60.0%
ACCTAACCTTAAGCGGGGGG+GGG + chr3_1:63226894-63226913 Msa0367540:intron 60.0%
ACTAGCCCCCCCCTGAAGAG+AGG + chr3_1:63221583-63221602 Msa0367540:intron 65.0%
GTGCTCCTCTCTTCAGGGGG+GGG - chr3_1:63221591-63221610 None:intergenic 65.0%
CGTGCTCCTCTCTTCAGGGG+GGG - chr3_1:63221592-63221611 None:intergenic 65.0%
GCGTGCTCCTCTCTTCAGGG+GGG - chr3_1:63221593-63221612 None:intergenic 65.0%
! GCAGCAGACCCTGGTGGTGT+AGG - chr3_1:63223008-63223027 None:intergenic 65.0%
! TTAGCGGGTGCAGCAGACCC+TGG - chr3_1:63223017-63223036 None:intergenic 65.0%
AAGCCATGCCCCCTCACACG+AGG + chr3_1:63223321-63223340 Msa0367540:intron 65.0%
AGCCATGCCCCCTCACACGA+GGG + chr3_1:63223322-63223341 Msa0367540:intron 65.0%
CCTAACCTTAAGCGGGGGGG+GGG + chr3_1:63226895-63226914 Msa0367540:intron 65.0%
CTAACCTTAAGCGGGGGGGG+GGG + chr3_1:63226896-63226915 Msa0367540:intron 65.0%
TAACCTTAAGCGGGGGGGGG+GGG + chr3_1:63226897-63226916 Msa0367540:intron 65.0%
!! TCAAGGCTGGCCTGACACCC+CGG - chr3_1:63227725-63227744 None:intergenic 65.0%
AGCCCTCGTGTGAGGGGGCA+TGG - chr3_1:63223327-63223346 None:intergenic 70.0%
CCCCCCCCCCGCTTAAGGTT+AGG - chr3_1:63226898-63226917 None:intergenic 70.0%
AACCTTAAGCGGGGGGGGGG+GGG + chr3_1:63226898-63226917 Msa0367540:intron 70.0%
! GAGCTCTTCCCCGGGGTGTC+AGG + chr3_1:63227712-63227731 Msa0367540:CDS 70.0%
!! AAGGCTGGCCTGACACCCCG+GGG - chr3_1:63227723-63227742 None:intergenic 70.0%
!! CAAGGCTGGCCTGACACCCC+GGG - chr3_1:63227724-63227743 None:intergenic 70.0%
GCGGGTGCAGCAGACCCTGG+TGG - chr3_1:63223014-63223033 None:intergenic 75.0%
ACCTTAAGCGGGGGGGGGGG+GGG + chr3_1:63226899-63226918 Msa0367540:intron 75.0%
! CCTTAAGCGGGGGGGGGGGG+GGG + chr3_1:63226900-63226919 Msa0367540:intron 80.0%
! CTTAAGCGGGGGGGGGGGGG+GGG + chr3_1:63226901-63226920 Msa0367540:intron 80.0%
! TTAAGCGGGGGGGGGGGGGG+GGG + chr3_1:63226902-63226921 Msa0367540:intron 80.0%
! CCCCCCCCCCCCCCCGCTTA+AGG - chr3_1:63226903-63226922 None:intergenic 85.0%
! TAAGCGGGGGGGGGGGGGGG+GGG + chr3_1:63226903-63226922 Msa0367540:intron 85.0%
! AAGCGGGGGGGGGGGGGGGG+GGG + chr3_1:63226904-63226923 Msa0367540:intron 90.0%
! AGCGGGGGGGGGGGGGGGGG+GGG + chr3_1:63226905-63226924 Msa0367540:intron 95.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 63220674 63228184 63220674 ID=Msa0367540;Name=Msa0367540
chr3_1 mRNA 63220674 63228184 63220674 ID=Msa0367540-mRNA-1;Parent=Msa0367540;Name=Msa0367540-mRNA-1;_AED=0.05;_eAED=0.05;_QI=144|1|1|1|1|1|14|440|432
chr3_1 exon 63220674 63221001 63220674 ID=Msa0367540-mRNA-1:exon:12433;Parent=Msa0367540-mRNA-1
chr3_1 exon 63222157 63222268 63222157 ID=Msa0367540-mRNA-1:exon:12434;Parent=Msa0367540-mRNA-1
chr3_1 exon 63222438 63222495 63222438 ID=Msa0367540-mRNA-1:exon:12435;Parent=Msa0367540-mRNA-1
chr3_1 exon 63222603 63222620 63222603 ID=Msa0367540-mRNA-1:exon:12436;Parent=Msa0367540-mRNA-1
chr3_1 exon 63222894 63223191 63222894 ID=Msa0367540-mRNA-1:exon:12437;Parent=Msa0367540-mRNA-1
chr3_1 exon 63224221 63224318 63224221 ID=Msa0367540-mRNA-1:exon:12438;Parent=Msa0367540-mRNA-1
chr3_1 exon 63224406 63224469 63224406 ID=Msa0367540-mRNA-1:exon:12439;Parent=Msa0367540-mRNA-1
chr3_1 exon 63225064 63225136 63225064 ID=Msa0367540-mRNA-1:exon:12440;Parent=Msa0367540-mRNA-1
chr3_1 exon 63225725 63225765 63225725 ID=Msa0367540-mRNA-1:exon:12441;Parent=Msa0367540-mRNA-1
chr3_1 exon 63226151 63226196 63226151 ID=Msa0367540-mRNA-1:exon:12442;Parent=Msa0367540-mRNA-1
chr3_1 exon 63227128 63227222 63227128 ID=Msa0367540-mRNA-1:exon:12443;Parent=Msa0367540-mRNA-1
chr3_1 exon 63227360 63227463 63227360 ID=Msa0367540-mRNA-1:exon:12444;Parent=Msa0367540-mRNA-1
chr3_1 exon 63227540 63227587 63227540 ID=Msa0367540-mRNA-1:exon:12445;Parent=Msa0367540-mRNA-1
chr3_1 exon 63227685 63228184 63227685 ID=Msa0367540-mRNA-1:exon:12446;Parent=Msa0367540-mRNA-1
chr3_1 five_prime_UTR 63220674 63220817 63220674 ID=Msa0367540-mRNA-1:five_prime_utr;Parent=Msa0367540-mRNA-1
chr3_1 CDS 63220818 63221001 63220818 ID=Msa0367540-mRNA-1:cds;Parent=Msa0367540-mRNA-1
chr3_1 CDS 63222157 63222268 63222157 ID=Msa0367540-mRNA-1:cds;Parent=Msa0367540-mRNA-1
chr3_1 CDS 63222438 63222495 63222438 ID=Msa0367540-mRNA-1:cds;Parent=Msa0367540-mRNA-1
chr3_1 CDS 63222603 63222620 63222603 ID=Msa0367540-mRNA-1:cds;Parent=Msa0367540-mRNA-1
chr3_1 CDS 63222894 63223191 63222894 ID=Msa0367540-mRNA-1:cds;Parent=Msa0367540-mRNA-1
chr3_1 CDS 63224221 63224318 63224221 ID=Msa0367540-mRNA-1:cds;Parent=Msa0367540-mRNA-1
chr3_1 CDS 63224406 63224469 63224406 ID=Msa0367540-mRNA-1:cds;Parent=Msa0367540-mRNA-1
chr3_1 CDS 63225064 63225136 63225064 ID=Msa0367540-mRNA-1:cds;Parent=Msa0367540-mRNA-1
chr3_1 CDS 63225725 63225765 63225725 ID=Msa0367540-mRNA-1:cds;Parent=Msa0367540-mRNA-1
chr3_1 CDS 63226151 63226196 63226151 ID=Msa0367540-mRNA-1:cds;Parent=Msa0367540-mRNA-1
chr3_1 CDS 63227128 63227222 63227128 ID=Msa0367540-mRNA-1:cds;Parent=Msa0367540-mRNA-1
chr3_1 CDS 63227360 63227463 63227360 ID=Msa0367540-mRNA-1:cds;Parent=Msa0367540-mRNA-1
chr3_1 CDS 63227540 63227587 63227540 ID=Msa0367540-mRNA-1:cds;Parent=Msa0367540-mRNA-1
chr3_1 CDS 63227685 63227744 63227685 ID=Msa0367540-mRNA-1:cds;Parent=Msa0367540-mRNA-1
chr3_1 three_prime_UTR 63227745 63228184 63227745 ID=Msa0367540-mRNA-1:three_prime_utr;Parent=Msa0367540-mRNA-1
Gene Sequence

>Msa0367540

ATGGAGAATCTTAATTTAGCCCTTGTTTCTTCCCCAAAACCTTTGCTTTTGGGACATTCTTCCTCAAAAAACCTCTTCACAAGAAGAAAGCCTTTCACTTTTGGGAGATTCACTTTTTCTGCTAACTCTTCTTCCTCTCATGTTACCAGGGTTGCTTCTAAATCTCACCAAAATCTAAAATCTGTGCAGGGGAAAGTGACAGTGCATAACTTTGCTAGCGTTTCTTCTTCAAATAGTCAAGAAACAACATCAGTTGGAGTTAGCCCCCAGTTATCACCACCTCCATCTTCGACTGTAGGGTCGCCGCTCTTTTGGATTGGTGTTGGTGTTGGGTTTTCTGCACTATTTTCAGTGGTAGCTTCAAGATTGAAGAAATATGCAATGCAACAAGCTTTCAAGACCATGATGGGCCAGATGAATACACAAAATAATCCATTTGACAGTGGTGCCTTTTCCCCTGGATCTCCTTTCCCCTTTCCAATGCCTACACCACCAGGGTCTGCTGCACCCGCTAATTCTACAAGTACTCAATCACAAGCATCTTCAGCACGAACTGCATCTCAATCCACTGTCACAGTAGACATACCTGCAACAAAAGTAGAAGCATCCCCAGGCCCAGACATCAATGTTAAAGATGAAGTAGAAGTAAAGAGTGAACCCAAAAAATCAGCTTTTGTAGATGTGTCTCCAGAAGAAACTGTGCAGCAGAATGCTTTTGAAAGATTTAAGGATGTTGACGCATCAAGTTCATTCAAGGAAGCAGCAGAAGCTTCTCAAAATGGAGCTCCCCCTAACCAAGGTTTTGGCGATTCTCCGGGTTCTCAATCTGCACGGAAATCAGTCTTATCGGTGGATGCTTTAGAGAAAATGATGGAGGACCCAACTGTGCAGAAGATGGTTTACCCCTATTTACCTGAGGAGATGAGGAACCCTTCTACCTTCAAATGGATGCTGCAGAATCCTGAGTATCGTCAACAACTTGAAGAAATGCTAAACAACATGGGTGGAAGCACTGAATGGGACAGTCGAATGATGGACACCTTAAAAAATTTCGACCTTAATAGTCCTGATGTTAAACAACAATTTGACCAAATTGGACTTTCTCCCGAAGAAGTCATTTCAAAGATTATGGCCAATCCTGATGTTGCCATGGCTTTTCAAAATCCTAGAGTTCAAGCAGCTATCATGGATTGTTCACAGAATCCAATGAATATTGCTAAATACCAAAATGATAAGGAGGTCATGGATGTCTTCAATAAAATATCTGAGCTCTTCCCCGGGGTGTCAGGCCAGCCTTGA
Protein sequence

>Msa0367540

MENLNLALVSSPKPLLLGHSSSKNLFTRRKPFTFGRFTFSANSSSSHVTRVASKSHQNLKSVQGKVTVHNFASVSSSNSQETTSVGVSPQLSPPPSSTVGSPLFWIGVGVGFSALFSVVASRLKKYAMQQAFKTMMGQMNTQNNPFDSGAFSPGSPFPFPMPTPPGSAAPANSTSTQSQASSARTASQSTVTVDIPATKVEASPGPDINVKDEVEVKSEPKKSAFVDVSPEETVQQNAFERFKDVDASSSFKEAAEASQNGAPPNQGFGDSPGSQSARKSVLSVDALEKMMEDPTVQKMVYPYLPEEMRNPSTFKWMLQNPEYRQQLEEMLNNMGGSTEWDSRMMDTLKNFDLNSPDVKQQFDQIGLSPEEVISKIMANPDVAMAFQNPRVQAAIMDCSQNPMNIAKYQNDKEVMDVFNKISELFPGVSGQP*