AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0327990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0327990 MtrunA17_Chr2g0309511 91.987 312 10 2 1 297 162 473 0.0 591
Msa0327990 MtrunA17_Chr2g0309521 83.333 312 37 2 1 297 162 473 0.0 540
Msa0327990 MtrunA17_Chr2g0309541 81.994 311 39 3 1 296 163 471 0.0 518
Msa0327990 MtrunA17_Chr2g0318911 77.492 311 55 2 1 296 163 473 2.35e-177 498
Msa0327990 MtrunA17_Chr1g0199991 52.980 302 127 2 1 287 156 457 1.87e-116 343
Msa0327990 MtrunA17_Chr1g0199971 50.331 302 135 2 1 287 156 457 3.19e-105 314
Msa0327990 MtrunA17_Chr7g0219051 47.604 313 137 5 1 288 156 466 1.36e-102 308
Msa0327990 MtrunA17_Chr4g0038311 43.590 312 146 8 1 286 156 463 2.53e-87 268
Msa0327990 MtrunA17_Chr2g0281641 42.222 315 154 6 2 289 77 390 2.93e-82 253
Msa0327990 MtrunA17_Chr3g0118841 44.262 305 144 8 1 290 200 493 3.59e-81 253
Msa0327990 MtrunA17_Chr3g0118851 44.918 305 143 8 1 290 199 493 1.92e-80 251
Msa0327990 MtrunA17_Chr3g0118881 42.122 311 146 8 1 287 199 499 3.41e-79 248
Msa0327990 MtrunA17_Chr3g0090331 40.461 304 159 6 2 289 196 493 1.07e-78 247
Msa0327990 MtrunA17_Chr4g0020241 44.040 302 145 8 2 287 195 488 9.36e-77 242
Msa0327990 MtrunA17_Chr1g0153881 44.079 304 139 8 1 288 211 499 9.95e-77 242
Msa0327990 MtrunA17_Chr4g0068841 40.000 320 158 7 1 287 160 478 2.59e-76 241
Msa0327990 MtrunA17_Chr2g0281621 40.000 315 155 7 2 287 157 466 3.39e-73 232
Msa0327990 MtrunA17_Chr4g0047861 37.380 313 170 5 2 289 177 488 1.70e-72 231
Msa0327990 MtrunA17_Chr1g0153941 40.061 327 148 7 1 289 199 515 3.69e-68 220
Msa0327990 MtrunA17_Chr3g0118831 40.594 303 123 8 1 287 199 460 1.46e-65 212
Msa0327990 MtrunA17_Chr3g0118861 39.241 316 126 8 1 290 197 472 7.98e-63 205
Msa0327990 MtrunA17_Chr3g0094811 36.278 317 164 9 1 288 149 456 1.01e-60 199
Msa0327990 MtrunA17_Chr3g0118891 39.145 304 130 7 1 290 199 461 1.98e-60 199
Msa0327990 MtrunA17_Chr3g0126031 34.740 308 178 5 2 286 149 456 5.34e-59 195
Msa0327990 MtrunA17_Chr4g0068861 37.262 263 147 5 1 245 205 467 2.47e-56 188
Msa0327990 MtrunA17_Chr8g0385871 35.016 317 169 10 1 286 152 462 3.47e-56 187
Msa0327990 MtrunA17_Chr5g0431301 34.936 312 176 6 2 286 150 461 1.16e-55 186
Msa0327990 MtrunA17_Chr3g0126051 32.177 317 190 7 2 293 155 471 3.72e-54 182
Msa0327990 MtrunA17_Chr7g0221551 33.754 317 171 9 1 286 149 457 5.84e-53 179
Msa0327990 MtrunA17_Chr2g0304931 33.121 314 174 7 1 287 159 463 6.61e-53 179
Msa0327990 MtrunA17_Chr3g0131731 34.591 318 173 10 1 288 151 463 1.12e-52 179
Msa0327990 MtrunA17_Chr1g0153921 39.485 233 110 7 74 289 1 219 6.40e-47 157
Msa0327990 MtrunA17_Chr8g0338461 29.360 344 179 10 2 285 156 495 4.59e-38 140
Msa0327990 MtrunA17_Chr7g0249431 29.023 348 179 11 2 285 155 498 1.20e-36 136
Msa0327990 MtrunA17_Chr7g0234051 26.765 340 188 8 2 282 155 492 2.29e-32 124
Msa0327990 MtrunA17_Chr1g0204191 30.502 259 148 8 56 286 236 490 5.31e-32 124
Msa0327990 MtrunA17_Chr1g0165811 40.171 117 59 2 1 111 148 259 8.62e-25 100
Msa0327990 MtrunA17_Chr1g0165821 34.641 153 80 4 151 286 29 178 3.15e-23 94.0
Msa0327990 MtrunA17_Chr4g0009661 27.508 309 178 11 6 280 169 465 2.88e-22 96.3
Msa0327990 MtrunA17_Chr4g0009651 25.890 309 183 11 6 280 169 465 6.84e-22 95.1
Msa0327990 MtrunA17_Chr2g0285371 26.984 315 187 12 6 285 163 469 1.71e-21 94.0
Msa0327990 MtrunA17_Chr2g0285351 26.367 311 194 10 6 285 163 469 4.73e-21 92.8
Msa0327990 MtrunA17_Chr7g0229651 27.225 191 123 5 60 237 1 188 5.33e-21 88.6
Msa0327990 MtrunA17_Chr7g0234041 27.365 296 149 10 1 245 152 432 5.38e-21 92.4
Msa0327990 MtrunA17_Chr4g0028271 28.571 301 180 9 6 283 206 494 8.58e-21 92.0
Msa0327990 MtrunA17_Chr4g0009701 26.797 306 184 12 6 280 169 465 1.53e-20 91.3
Msa0327990 MtrunA17_Chr4g0009681 27.090 299 184 11 6 276 166 458 6.74e-20 89.4
Msa0327990 MtrunA17_Chr4g0009641 26.557 305 186 10 6 280 145 441 4.95e-19 86.7
Msa0327990 MtrunA17_Chr2g0327401 26.059 307 188 10 6 287 210 502 5.42e-19 87.0
Msa0327990 MtrunA17_Chr4g0009711 25.083 303 193 10 6 280 169 465 5.94e-19 86.7
Msa0327990 MtrunA17_Chr1g0199171 25.806 310 178 10 6 283 198 487 8.20e-19 86.3
Msa0327990 MtrunA17_Chr2g0285381 24.917 301 194 9 6 280 166 460 1.05e-18 85.9
Msa0327990 MtrunA17_Chr4g0028241 25.155 322 176 9 1 282 193 489 1.30e-18 85.9
Msa0327990 MtrunA17_Chr1g0171411 28.053 303 180 11 6 283 192 481 1.51e-18 85.5
Msa0327990 MtrunA17_Chr4g0028261 28.094 299 183 10 6 282 227 515 7.89e-18 83.6
Msa0327990 MtrunA17_Chr4g0009671 25.806 310 182 9 6 280 134 430 8.43e-18 83.2
Msa0327990 MtrunA17_Chr3g0133011 25.243 309 193 7 6 280 187 491 1.18e-17 82.8
Msa0327990 MtrunA17_Chr4g0028281 25.249 301 188 10 6 282 204 491 2.58e-17 82.0
Msa0327990 MtrunA17_Chr1g0153931 63.333 60 21 1 2 60 198 257 2.59e-17 80.1
Msa0327990 MtrunA17_Chr2g0327381 23.235 340 190 10 6 282 205 536 4.88e-17 81.3
Msa0327990 MtrunA17_Chr3g0093971 23.920 301 191 9 6 277 155 446 4.09e-14 72.4
Msa0327990 MtrunA17_Chr7g0229641 52.083 48 23 0 10 57 45 92 4.48e-14 66.6
Msa0327990 MtrunA17_Chr2g0327371 31.683 101 67 1 10 110 187 285 2.14e-12 67.4
Msa0327990 MtrunA17_Chr4g0068851 60.870 46 18 0 242 287 16 61 3.66e-12 60.8
Msa0327990 MtrunA17_Chr2g0295271 83.333 30 5 0 31 60 19 48 1.61e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0327990 AT4G30810.1 60.912 307 102 3 1 289 159 465 3.36e-132 384
Msa0327990 AT3G07990.1 51.163 301 132 2 1 286 157 457 1.16e-106 318
Msa0327990 AT2G35780.1 50.327 306 125 5 1 286 153 451 1.23e-104 313
Msa0327990 AT4G30610.1 48.387 310 135 5 1 286 154 462 6.10e-98 296
Msa0327990 AT3G02110.1 45.886 316 139 5 1 286 158 471 4.49e-97 294
Msa0327990 AT2G24010.1 48.852 305 133 6 1 286 151 451 2.18e-94 286
Msa0327990 AT2G24010.2 48.852 305 133 6 1 286 166 466 3.81e-94 286
Msa0327990 AT2G24000.1 47.419 310 137 6 1 285 152 460 9.34e-92 280
Msa0327990 AT2G24010.3 45.152 330 133 7 1 286 137 462 8.69e-89 272
Msa0327990 AT5G23210.2 41.284 327 151 6 1 288 77 401 7.30e-82 253
Msa0327990 AT5G23210.5 41.284 327 151 6 1 288 78 402 1.16e-81 252
Msa0327990 AT5G23210.1 41.284 327 151 6 1 288 173 497 1.04e-80 253
Msa0327990 AT2G35770.1 43.322 307 148 7 1 287 159 459 4.47e-78 245
Msa0327990 AT1G61130.1 40.645 310 159 6 1 286 152 460 1.00e-75 239
Msa0327990 AT2G24000.2 45.714 280 126 6 31 285 119 397 2.62e-75 236
Msa0327990 AT5G08260.1 39.432 317 160 7 2 287 162 477 9.39e-74 234
Msa0327990 AT3G63470.1 40.594 303 154 7 2 286 203 497 1.35e-72 232
Msa0327990 AT4G15100.1 39.385 325 162 7 1 292 165 487 2.10e-71 228
Msa0327990 AT1G11080.1 40.125 319 158 6 1 286 171 489 7.18e-71 227
Msa0327990 AT1G11080.2 40.125 319 158 6 1 286 171 489 9.97e-71 227
Msa0327990 AT3G17180.1 39.308 318 160 8 1 287 161 476 2.54e-70 225
Msa0327990 AT5G23210.4 39.785 279 139 5 1 252 77 353 3.56e-65 209
Msa0327990 AT5G23210.3 39.785 279 139 5 1 252 173 449 5.20e-64 208
Msa0327990 AT2G24010.4 48.661 224 104 5 1 217 137 356 1.21e-63 204
Msa0327990 AT3G52020.1 36.842 304 168 9 2 286 200 498 6.42e-59 196
Msa0327990 AT5G42240.1 36.218 312 172 6 2 286 153 464 3.41e-58 194
Msa0327990 AT3G52010.1 35.948 306 167 10 1 286 188 484 1.08e-57 192
Msa0327990 AT1G43780.1 34.268 321 183 7 1 293 157 477 6.76e-57 190
Msa0327990 AT2G12480.3 35.390 308 174 6 2 286 152 457 1.64e-56 189
Msa0327990 AT2G33530.1 35.962 317 166 10 1 286 152 462 3.10e-56 188
Msa0327990 AT5G42230.1 34.185 313 179 6 1 286 148 460 1.27e-54 184
Msa0327990 AT5G42230.2 34.185 313 179 6 1 286 148 460 1.27e-54 184
Msa0327990 AT3G17180.2 37.643 263 144 6 1 245 161 421 1.79e-54 183
Msa0327990 AT3G52000.1 36.393 305 167 10 1 286 183 479 4.55e-54 183
Msa0327990 AT2G05850.1 33.770 305 175 8 1 286 188 484 3.31e-53 181
Msa0327990 AT1G28110.1 34.185 313 175 8 1 286 150 458 1.87e-52 178
Msa0327990 AT1G28110.2 34.185 313 175 8 1 286 150 458 1.87e-52 178
Msa0327990 AT2G12480.4 33.225 307 158 6 2 286 152 433 2.67e-48 167
Msa0327990 AT2G12480.2 32.468 308 158 5 2 286 152 432 6.31e-47 163
Msa0327990 AT2G12480.1 32.573 307 158 6 2 286 152 431 1.90e-46 162
Msa0327990 AT4G12910.1 28.529 340 185 7 2 285 160 497 1.20e-40 147
Msa0327990 AT3G25420.1 28.613 346 181 10 2 285 153 494 3.27e-37 138
Msa0327990 AT4G12910.2 26.829 287 165 5 2 245 160 444 6.92e-30 117
Msa0327990 AT2G22990.6 25.753 299 187 10 6 285 37 319 1.86e-22 95.5
Msa0327990 AT2G22990.1 25.753 299 187 10 6 285 151 433 8.46e-22 95.1
Msa0327990 AT2G22990.2 25.418 299 188 10 6 285 37 319 9.78e-22 93.6
Msa0327990 AT2G22990.5 25.418 299 188 10 6 285 142 424 4.45e-21 92.8
Msa0327990 AT3G45010.1 26.266 316 179 11 6 287 209 504 1.20e-19 89.4
Msa0327990 AT2G22920.2 25.085 295 187 8 6 282 154 432 4.71e-19 87.0
Msa0327990 AT2G23000.1 26.855 283 161 11 6 262 153 415 5.13e-19 87.0
Msa0327990 AT2G23000.2 26.855 283 161 11 6 262 153 415 5.13e-19 87.0
Msa0327990 AT3G12203.2 25.914 301 174 10 6 282 101 376 1.20e-18 85.5
Msa0327990 AT2G22970.1 25.503 298 186 10 6 285 154 433 1.23e-18 85.9
Msa0327990 AT3G12203.1 25.658 304 177 10 6 285 159 437 1.51e-18 85.9
Msa0327990 AT3G12203.3 25.658 304 177 10 6 285 138 416 1.59e-18 85.5
Msa0327990 AT3G12220.2 27.333 300 172 11 6 282 126 402 1.86e-18 85.1
Msa0327990 AT2G22980.1 24.579 297 180 10 6 282 155 427 2.56e-18 85.1
Msa0327990 AT3G12230.1 26.159 302 179 10 6 285 156 435 2.59e-18 85.1
Msa0327990 AT2G22990.3 27.236 246 158 7 6 245 151 381 2.62e-18 85.1
Msa0327990 AT3G12220.1 27.333 300 172 11 6 282 156 432 2.69e-18 85.1
Msa0327990 AT2G22990.4 27.236 246 158 7 6 245 151 381 2.74e-18 84.7
Msa0327990 AT1G73270.1 25.168 298 187 9 6 285 162 441 7.35e-18 84.0
Msa0327990 AT1G73270.2 25.168 298 187 9 6 285 162 441 7.41e-18 83.6
Msa0327990 AT5G22980.1 25.249 301 188 11 6 282 206 493 2.30e-17 82.4
Msa0327990 AT1G73280.3 24.262 305 181 10 6 285 35 314 3.86e-17 80.5
Msa0327990 AT1G73280.4 25.497 302 175 11 6 282 60 336 5.56e-17 80.5
Msa0327990 AT3G12240.1 25.497 302 181 10 6 285 157 436 8.50e-17 80.5
Msa0327990 AT1G73280.1 24.262 305 181 10 6 285 162 441 1.30e-16 80.1
Msa0327990 AT3G10450.2 24.497 298 189 11 6 285 115 394 2.69e-16 79.0
Msa0327990 AT3G10450.1 24.497 298 189 11 6 285 158 437 3.77e-16 78.6
Msa0327990 AT2G22920.1 26.122 245 161 5 6 245 154 383 8.25e-16 77.4
Msa0327990 AT2G22970.3 25.249 301 185 10 6 288 154 432 9.72e-16 77.4
Msa0327990 AT5G09640.1 25.079 315 190 11 6 282 156 462 1.07e-15 77.4
Msa0327990 AT1G33540.2 25.321 312 190 11 6 282 115 418 1.08e-15 77.4
Msa0327990 AT2G22980.5 24.638 276 163 11 6 260 38 289 1.49e-15 75.9
Msa0327990 AT1G33540.1 25.321 312 190 11 6 282 158 461 1.49e-15 77.0
Msa0327990 AT2G22970.4 26.939 245 157 7 6 245 154 381 1.62e-15 76.6
Msa0327990 AT2G23010.1 24.000 300 193 8 6 285 153 437 3.96e-15 75.5
Msa0327990 AT2G22980.2 24.364 275 165 9 6 260 155 406 4.75e-15 75.5
Msa0327990 AT2G22980.4 23.509 285 175 9 6 270 155 416 6.03e-15 75.1
Msa0327990 AT1G73290.1 22.635 296 195 8 6 285 161 438 1.06e-14 74.3
Msa0327990 AT1G73310.1 25.000 292 189 9 6 282 162 438 1.14e-14 74.3
Msa0327990 AT2G23010.2 23.667 300 194 8 6 285 153 437 2.03e-14 73.6
Msa0327990 AT1G73300.1 23.154 298 193 10 6 285 162 441 6.54e-14 72.0
Msa0327990 AT1G73300.2 23.154 298 193 10 6 285 162 441 6.54e-14 72.0
Msa0327990 AT3G10450.3 26.122 245 159 8 6 245 115 342 5.61e-13 68.9
Msa0327990 AT3G10450.4 26.122 245 159 8 6 245 158 385 6.62e-13 68.9
Msa0327990 AT5G36180.5 22.742 299 187 11 6 282 60 336 1.08e-12 67.8
Msa0327990 AT5G36180.3 22.742 299 187 11 6 282 60 336 1.08e-12 67.8
Msa0327990 AT1G73310.3 26.033 242 163 7 6 245 60 287 2.55e-12 66.6
Msa0327990 AT1G73310.2 26.033 242 163 7 6 245 162 389 3.43e-12 67.0
Msa0327990 AT2G22920.4 31.783 129 83 2 6 129 154 282 3.60e-12 66.2
Msa0327990 AT2G22980.3 30.233 129 80 3 6 129 157 280 5.22e-12 65.9
Msa0327990 AT1G73290.3 22.634 243 168 5 6 245 161 386 2.50e-11 64.3
Msa0327990 AT1G73280.2 33.636 110 71 1 6 113 162 271 3.61e-11 63.5
Msa0327990 AT1G73290.2 30.556 108 75 0 6 113 161 268 4.09e-11 63.2
Msa0327990 AT3G56540.1 72.727 33 9 0 2 34 200 232 8.20e-11 61.6

Find 74 sgRNAs with CRISPR-Local

Find 434 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAGCTTGAGAGCATTTA+TGG 0.168879 2_4:-39997948 None:intergenic
TTCCTACCGGGCTGCGAATA+TGG 0.221269 2_4:+39997763 Msa0327990:CDS
CAGATTCATGTAACAAAATC+TGG 0.238398 2_4:+39993673 Msa0327990:CDS
TATATTACCCATTTCTTCAT+AGG 0.262481 2_4:-39993703 None:intergenic
CTGCAGGTCTGCCATTTATC+AGG 0.281846 2_4:-39997347 None:intergenic
ACGTGAGTCCGTCGTATTCT+TGG 0.330369 2_4:-39998546 None:intergenic
GGAAATTGCCTATGAAGAAA+TGG 0.335599 2_4:+39993695 Msa0327990:CDS
TACCACTGGACCACATAAAC+TGG 0.338363 2_4:-39993584 None:intergenic
GGCTGCGAATATGGATATTC+AGG 0.343847 2_4:+39997772 Msa0327990:CDS
AGATGATTTCAGTGATCAAT+TGG 0.344814 2_4:+39993554 Msa0327990:CDS
TTGATCAAAGCCTTCTTAGA+AGG 0.346040 2_4:+39998631 Msa0327990:CDS
ATCAATGTTAGAGCAAGTTT+TGG 0.347763 2_4:-39998613 None:intergenic
TGTGATTTGTAACAGAGTTT+TGG 0.365530 2_4:+39997221 Msa0327990:intron
GAAAATCACATAGCAGATTC+AGG 0.369651 2_4:-39993632 None:intergenic
CAGATCATAAGCCTGATAAA+TGG 0.380720 2_4:+39997336 Msa0327990:CDS
GAATCTGATGGGTGTTCAAC+TGG 0.388550 2_4:-39993657 None:intergenic
CGTGAGTCCGTCGTATTCTT+GGG 0.415044 2_4:-39998545 None:intergenic
TTTGTCAATGTACGGGGTGC+AGG 0.423442 2_4:+39998568 Msa0327990:CDS
GATGATTTCAGTGATCAATT+GGG 0.430253 2_4:+39993555 Msa0327990:CDS
GTGGTCCAGTGGTATGATTT+CGG 0.431503 2_4:+39993593 Msa0327990:CDS
GGAGGGGTAAAGATACTGTA+TGG 0.435053 2_4:-39993729 None:intergenic
CATTTATCAGGCTTATGATC+TGG 0.443942 2_4:-39997335 None:intergenic
CATGGAGGTTCCTTCTAAGA+AGG 0.450334 2_4:-39998641 None:intergenic
TGTAGAGCCCTTTGGACCTC+TGG 0.456216 2_4:-39997305 None:intergenic
ATCAGTGGTGAGAGCTATGC+AGG 0.459878 2_4:+39993239 Msa0327990:CDS
GAATAGCGAGTAGATGCTAC+TGG 0.461334 2_4:-39997926 None:intergenic
GAAATTGCCTATGAAGAAAT+GGG 0.466008 2_4:+39993696 Msa0327990:CDS
TGGGGATGTTCCAGTTTATG+TGG 0.474009 2_4:+39993574 Msa0327990:CDS
GATCAACATGTAGAGCCCTT+TGG 0.479007 2_4:-39997313 None:intergenic
ATCTCATATTTCTATTGAAG+TGG 0.479798 2_4:+39993177 Msa0327990:CDS
CTGATAAATGGCAGACCTGC+AGG 0.481227 2_4:+39997348 Msa0327990:CDS
AGTTGTAATTGACAATAACT+TGG 0.481672 2_4:-39993365 None:intergenic
GACTCACGTTTGTCAATGTA+CGG 0.496134 2_4:+39998560 Msa0327990:CDS
TATCATTCGCATGGCAAGGA+GGG 0.505028 2_4:-39993746 None:intergenic
GTGATGTGGTAGGTACTAAC+TGG 0.511426 2_4:+39997697 Msa0327990:intron
TATCGTGAACTTATTCCTAC+CGG 0.514663 2_4:+39997750 Msa0327990:CDS
CAAGATTCTATAAATCTCAA+AGG 0.526039 2_4:+39993399 Msa0327990:CDS
AAGATTCTATAAATCTCAAA+GGG 0.543820 2_4:+39993400 Msa0327990:CDS
ACTCACGTTTGTCAATGTAC+GGG 0.547857 2_4:+39998561 Msa0327990:CDS
TATAAATCTCAAAGGGTACA+TGG 0.549630 2_4:+39993407 Msa0327990:CDS
TTCCAGTTTATGTGGTCCAG+TGG 0.552998 2_4:+39993582 Msa0327990:CDS
AGATTCATGTAACAAAATCT+GGG 0.553769 2_4:+39993674 Msa0327990:CDS
AGTGTGCGTGGTTCAAGAGT+TGG 0.567712 2_4:-39998664 None:intergenic
CAATCGACCAGAGGTCCAAA+GGG 0.569543 2_4:+39997298 Msa0327990:CDS
TCAATCGACCAGAGGTCCAA+AGG 0.570553 2_4:+39997297 Msa0327990:CDS
CCATGCGAATGATAATCAGC+TGG 0.571298 2_4:+39993755 Msa0327990:CDS
CCAGCTGATTATCATTCGCA+TGG 0.574427 2_4:-39993755 None:intergenic
TTGTCAATGTACGGGGTGCA+GGG 0.575365 2_4:+39998569 Msa0327990:CDS
TGATTATCATTCGCATGGCA+AGG 0.582514 2_4:-39993750 None:intergenic
ACAATAACTTGGCTAAGTTG+CGG 0.586151 2_4:-39993354 None:intergenic
ATTTATTGCAGTGATGTGGT+AGG 0.588890 2_4:+39997687 Msa0327990:intron
ATGATTTCAGTGATCAATTG+GGG 0.589122 2_4:+39993556 Msa0327990:CDS
TATCATTTATTGCAGTGATG+TGG 0.589586 2_4:+39997683 Msa0327990:intron
TTGATCCGAAATCATACCAC+TGG 0.589667 2_4:-39993598 None:intergenic
ATCATTCGCATGGCAAGGAG+GGG 0.589954 2_4:-39993745 None:intergenic
GAAACAATCAGGTAGGAGGA+TGG 0.593228 2_4:+39998521 Msa0327990:intron
GAATATCCATATTCGCAGCC+CGG 0.593696 2_4:-39997769 None:intergenic
AAGTGAAACAATCAGGTAGG+AGG 0.598460 2_4:+39998517 Msa0327990:intron
ATGCTGTGTTTCTCTGTGCA+AGG 0.604550 2_4:-39997266 None:intergenic
GCGTGGTTCAAGAGTTGGCA+TGG 0.605789 2_4:-39998659 None:intergenic
ATTGCGGCGGTGAGTGTGCG+TGG 0.608832 2_4:-39998676 None:intergenic
ATCGTGAACTTATTCCTACC+GGG 0.615836 2_4:+39997751 Msa0327990:CDS
GAATGTATCATATCAAATTG+CGG 0.625594 2_4:-39998692 None:intergenic
GAGGGGTAAAGATACTGTAT+GGG 0.629985 2_4:-39993728 None:intergenic
AATAGCGAGTAGATGCTACT+GGG 0.645704 2_4:-39997925 None:intergenic
TGTGGTAGGTACTAACTGGA+AGG 0.648375 2_4:+39997701 Msa0327990:CDS
CTCACGTTTGTCAATGTACG+GGG 0.653832 2_4:+39998562 Msa0327990:CDS
ATCCATATTCGCAGCCCGGT+AGG 0.671726 2_4:-39997765 None:intergenic
TGGTTCAAGAGTTGGCATGG+AGG 0.699329 2_4:-39998656 None:intergenic
TATATATTGAGCACTGACGT+AGG 0.704394 2_4:-39997729 None:intergenic
GGATGGACCCAAGAATACGA+CGG 0.705104 2_4:+39998538 Msa0327990:CDS
TGTATACTTCAATCGACCAG+AGG 0.705352 2_4:+39997289 Msa0327990:CDS
TTATCATTCGCATGGCAAGG+AGG 0.711217 2_4:-39993747 None:intergenic
TGTATCATATCAAATTGCGG+CGG 0.722352 2_4:-39998689 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAACATTATAAACATA+AGG + chr2_4:39994434-39994453 Msa0327990:intron 10.0%
!! TATAAACATTATAAACATAA+GGG + chr2_4:39994435-39994454 Msa0327990:intron 10.0%
!! TGATTAAAAAAGTTAATTAT+CGG - chr2_4:39997019-39997038 None:intergenic 10.0%
!! CAATTATATCATTTAATAAT+TGG + chr2_4:39997567-39997586 Msa0327990:intron 10.0%
!! TAGATTAATTAATACTGAAA+TGG + chr2_4:39994104-39994123 Msa0327990:intron 15.0%
!!! CTATGATTGTATAAATATTT+TGG + chr2_4:39995663-39995682 Msa0327990:intron 15.0%
!!! TTATGAATTTGTTATAAACA+TGG - chr2_4:39997646-39997665 None:intergenic 15.0%
!!! TTTTTTCCTAAAGTAATTTT+AGG + chr2_4:39997828-39997847 Msa0327990:intron 15.0%
!! AGTATATTAATCATAAGTAT+TGG + chr2_4:39998306-39998325 Msa0327990:intron 15.0%
!! TAGTAAATGAGAAAATATTA+AGG - chr2_4:39998450-39998469 None:intergenic 15.0%
!! AAGATTCTATAAATCTCAAA+GGG + chr2_4:39993400-39993419 Msa0327990:CDS 20.0%
!!! TTGTTTTATCTTGTCTTTAA+AGG + chr2_4:39993819-39993838 Msa0327990:intron 20.0%
!! GCATCTTAAATTAATTTAGA+AGG - chr2_4:39993978-39993997 None:intergenic 20.0%
!!! AATTTAAGTTTGTGAATGAT+TGG - chr2_4:39994176-39994195 None:intergenic 20.0%
!!! TTCAATTTGTTGATAAGTTT+TGG - chr2_4:39995091-39995110 None:intergenic 20.0%
!! TACAATTATGGTTCTTTATT+TGG + chr2_4:39995291-39995310 Msa0327990:intron 20.0%
!!! ATAAGAAAAGCATTAATTGA+TGG + chr2_4:39995707-39995726 Msa0327990:intron 20.0%
!!! TTTTGAGAGATCATTTTTTA+AGG + chr2_4:39996230-39996249 Msa0327990:intron 20.0%
!!! TTTGAGAGATCATTTTTTAA+GGG + chr2_4:39996231-39996250 Msa0327990:intron 20.0%
!!! ATTAACCTAATTTAACTTAG+TGG + chr2_4:39996776-39996795 Msa0327990:intron 20.0%
!! ATACATTTGTGATATGAATA+AGG - chr2_4:39997202-39997221 None:intergenic 20.0%
!!! TTCGTAGTATATTTGAAATA+AGG - chr2_4:39997445-39997464 None:intergenic 20.0%
!! CTGCAATAAATGATAATAAT+TGG - chr2_4:39997678-39997697 None:intergenic 20.0%
!! GTTGGAAATATATAGAAAAA+TGG - chr2_4:39998381-39998400 None:intergenic 20.0%
!!! AAAATATTAAGGCTTTGTTT+GGG - chr2_4:39998439-39998458 None:intergenic 20.0%
!! ATCTCATATTTCTATTGAAG+TGG + chr2_4:39993177-39993196 Msa0327990:CDS 25.0%
!!! AAAGTCTGTGTTTTTATACT+GGG - chr2_4:39993216-39993235 None:intergenic 25.0%
!!! AAAAGTCTGTGTTTTTATAC+TGG - chr2_4:39993217-39993236 None:intergenic 25.0%
! AGTTGTAATTGACAATAACT+TGG - chr2_4:39993368-39993387 None:intergenic 25.0%
! CAAGATTCTATAAATCTCAA+AGG + chr2_4:39993399-39993418 Msa0327990:CDS 25.0%
!!! TACTAGTTTTTGTGCAAAAA+TGG - chr2_4:39993441-39993460 None:intergenic 25.0%
! GATTCAGTTAATAATGTGAA+AGG - chr2_4:39993492-39993511 None:intergenic 25.0%
!! TTTTGTTACATGAATCTGAT+GGG - chr2_4:39993671-39993690 None:intergenic 25.0%
!! ATTTTGTTACATGAATCTGA+TGG - chr2_4:39993672-39993691 None:intergenic 25.0%
! AGATTCATGTAACAAAATCT+GGG + chr2_4:39993674-39993693 Msa0327990:CDS 25.0%
! TATATTACCCATTTCTTCAT+AGG - chr2_4:39993706-39993725 None:intergenic 25.0%
!! TTTAAAGGTTCTAATATCGT+TGG + chr2_4:39993834-39993853 Msa0327990:intron 25.0%
! AAAACGGCGAAAAAAATATA+AGG - chr2_4:39994276-39994295 None:intergenic 25.0%
!! ATGTGTTGAAAATTAGTTTG+AGG - chr2_4:39994575-39994594 None:intergenic 25.0%
!! AGATTTTGTAAAACAGCAAA+AGG - chr2_4:39994660-39994679 None:intergenic 25.0%
!!! TACATTTTGAAGCATATGAA+AGG - chr2_4:39994794-39994813 None:intergenic 25.0%
!! TAAAGATGAATTTTGTCTCA+TGG + chr2_4:39994847-39994866 Msa0327990:intron 25.0%
! GTTTAATTGAAGTTCTATCA+AGG - chr2_4:39994985-39995004 None:intergenic 25.0%
! ATCTCAAGCTAAGTATATAT+AGG + chr2_4:39995197-39995216 Msa0327990:intron 25.0%
! AATCTGAATCTGTACAATTA+TGG + chr2_4:39995279-39995298 Msa0327990:intron 25.0%
! AACCTTGGATATATTTAGTT+TGG + chr2_4:39995346-39995365 Msa0327990:intron 25.0%
!! ACCTTGGATATATTTAGTTT+GGG + chr2_4:39995347-39995366 Msa0327990:intron 25.0%
! AGTGATATAATATTTACTGC+CGG - chr2_4:39995417-39995436 None:intergenic 25.0%
!!! AACAGTTTTAAGATTCAACA+AGG + chr2_4:39995476-39995495 Msa0327990:intron 25.0%
!!! GTATTTCTGTTTTTAGAGTT+CGG + chr2_4:39995597-39995616 Msa0327990:intron 25.0%
!!! TGATGGATTCACTATTTATT+TGG + chr2_4:39995724-39995743 Msa0327990:intron 25.0%
! TTGCAGAACCAAAAATTATA+GGG - chr2_4:39995894-39995913 None:intergenic 25.0%
! ATTGCAGAACCAAAAATTAT+AGG - chr2_4:39995895-39995914 None:intergenic 25.0%
! CTATGGTAACTAAATTAGAA+AGG + chr2_4:39996021-39996040 Msa0327990:intron 25.0%
!!! TTTGCTTTGAGAGTATTATA+GGG + chr2_4:39996287-39996306 Msa0327990:intron 25.0%
!! GAGATTTTATTCTTCTTCAT+TGG - chr2_4:39996375-39996394 None:intergenic 25.0%
! AGAGAAAATGAACTAATGAA+GGG - chr2_4:39996420-39996439 None:intergenic 25.0%
! AAGAGAAAATGAACTAATGA+AGG - chr2_4:39996421-39996440 None:intergenic 25.0%
! CTTATCCACTAAGTTAAATT+AGG - chr2_4:39996784-39996803 None:intergenic 25.0%
!!! TGGTTACTGATTTTCATAAA+GGG - chr2_4:39996867-39996886 None:intergenic 25.0%
!!! TTGGTTACTGATTTTCATAA+AGG - chr2_4:39996868-39996887 None:intergenic 25.0%
! TGTGATAATTGAGATTGTTA+TGG - chr2_4:39997057-39997076 None:intergenic 25.0%
! GTGTAGAATTTCTATCATTA+TGG - chr2_4:39997086-39997105 None:intergenic 25.0%
!! TCAAAACAGAAACTTTTGAA+AGG + chr2_4:39997377-39997396 Msa0327990:intron 25.0%
!! GTAGTATATTTGAAATAAGG+TGG - chr2_4:39997442-39997461 None:intergenic 25.0%
! AACTAAACGAAGAAAATAGA+TGG - chr2_4:39998038-39998057 None:intergenic 25.0%
!! TCTATTTTCTTCGTTTAGTT+AGG + chr2_4:39998038-39998057 Msa0327990:intron 25.0%
!!! GAAAATATTAAGGCTTTGTT+TGG - chr2_4:39998440-39998459 None:intergenic 25.0%
!! AAGTCTGTGTTTTTATACTG+GGG - chr2_4:39993215-39993234 None:intergenic 30.0%
! ATTCTAGATTTCCTTGTTTC+AGG + chr2_4:39993321-39993340 Msa0327990:intron 30.0%
! TATAAATCTCAAAGGGTACA+TGG + chr2_4:39993407-39993426 Msa0327990:CDS 30.0%
AGATGATTTCAGTGATCAAT+TGG + chr2_4:39993554-39993573 Msa0327990:CDS 30.0%
GATGATTTCAGTGATCAATT+GGG + chr2_4:39993555-39993574 Msa0327990:CDS 30.0%
ATGATTTCAGTGATCAATTG+GGG + chr2_4:39993556-39993575 Msa0327990:CDS 30.0%
CAGATTCATGTAACAAAATC+TGG + chr2_4:39993673-39993692 Msa0327990:CDS 30.0%
GAAATTGCCTATGAAGAAAT+GGG + chr2_4:39993696-39993715 Msa0327990:CDS 30.0%
AATGATTCTGTCCAGATAAA+TGG + chr2_4:39993946-39993965 Msa0327990:intron 30.0%
TAAATTTCACTCTAAGCTCT+CGG + chr2_4:39994190-39994209 Msa0327990:intron 30.0%
GGCGAAAAAAATATAAGGAT+TGG - chr2_4:39994271-39994290 None:intergenic 30.0%
! CACTATGATTTGCCATTAAT+TGG - chr2_4:39994364-39994383 None:intergenic 30.0%
! TGGCTATTTCAAAACTATCT+TGG + chr2_4:39994505-39994524 Msa0327990:intron 30.0%
AATCTGTTAATAAGCACAAG+AGG - chr2_4:39994910-39994929 None:intergenic 30.0%
ATAAAAGATAGAGTCAGAAG+AGG - chr2_4:39995179-39995198 None:intergenic 30.0%
! TTGTACAGATTCAGATTTTC+AGG - chr2_4:39995276-39995295 None:intergenic 30.0%
TTAATCATCCATATGAGTCT+TGG + chr2_4:39995317-39995336 Msa0327990:intron 30.0%
TCCCAAACTAAATATATCCA+AGG - chr2_4:39995351-39995370 None:intergenic 30.0%
!! TATATTTAGTTTGGGACAGA+AGG + chr2_4:39995355-39995374 Msa0327990:intron 30.0%
GGAAATTACAATTTGAATCC+TGG + chr2_4:39995383-39995402 Msa0327990:intron 30.0%
!!! TCAAAAAAAGTCATCGGTTT+TGG - chr2_4:39995528-39995547 None:intergenic 30.0%
AAGTGCTCAAAAAAAGTCAT+CGG - chr2_4:39995534-39995553 None:intergenic 30.0%
!!! TGTTTTTAGAGTTCGGAATT+CGG + chr2_4:39995604-39995623 Msa0327990:intron 30.0%
!! ATGGGGTTTTATCGAATATT+CGG - chr2_4:39995809-39995828 None:intergenic 30.0%
! TTACACAGAAAGAGTATGAT+GGG - chr2_4:39995827-39995846 None:intergenic 30.0%
ATCATACTCTTTCTGTGTAA+CGG + chr2_4:39995827-39995846 Msa0327990:intron 30.0%
TGCAGAACCAAAAATTATAG+GGG - chr2_4:39995893-39995912 None:intergenic 30.0%
GAAATATGTTAGGGTAAGAA+AGG + chr2_4:39995950-39995969 Msa0327990:intron 30.0%
TGGTAACTAAATTAGAAAGG+AGG + chr2_4:39996024-39996043 Msa0327990:intron 30.0%
AGTATAGTAATATTCAGGAG+AGG + chr2_4:39996072-39996091 Msa0327990:intron 30.0%
GTATAGTAATATTCAGGAGA+GGG + chr2_4:39996073-39996092 Msa0327990:intron 30.0%
TGAGAAAAATGGAAAGATAG+TGG + chr2_4:39996194-39996213 Msa0327990:intron 30.0%
TGATCTCTCAAAAAAAGTGA+GGG - chr2_4:39996223-39996242 None:intergenic 30.0%
ATGATCTCTCAAAAAAAGTG+AGG - chr2_4:39996224-39996243 None:intergenic 30.0%
!! GTTTGCTTTGAGAGTATTAT+AGG + chr2_4:39996286-39996305 Msa0327990:intron 30.0%
TAAAAAAATGCAATGGGGAA+GGG - chr2_4:39996326-39996345 None:intergenic 30.0%
GAAGAATAAAATCTCATGCA+AGG + chr2_4:39996380-39996399 Msa0327990:intron 30.0%
AATAAAATCTCATGCAAGGT+TGG + chr2_4:39996384-39996403 Msa0327990:intron 30.0%
ATAAAATCTCATGCAAGGTT+GGG + chr2_4:39996385-39996404 Msa0327990:intron 30.0%
!! TTGGTGTTATTCAAACTATC+AGG - chr2_4:39996514-39996533 None:intergenic 30.0%
ATAGTTTGAATAACACCAAG+TGG + chr2_4:39996515-39996534 Msa0327990:intron 30.0%
TAGTTTGAATAACACCAAGT+GGG + chr2_4:39996516-39996535 Msa0327990:intron 30.0%
TGAAAATCAGTAACCAAGAA+AGG + chr2_4:39996871-39996890 Msa0327990:intron 30.0%
! GTAACCAAGAAAGGTATATT+AGG + chr2_4:39996880-39996899 Msa0327990:intron 30.0%
ACTACCTAATATACCTTTCT+TGG - chr2_4:39996887-39996906 None:intergenic 30.0%
!! TGTGATTTGTAACAGAGTTT+TGG + chr2_4:39997221-39997240 Msa0327990:intron 30.0%
TACGAACTGAAATGTAGAAA+TGG + chr2_4:39997459-39997478 Msa0327990:intron 30.0%
ACTGAAAACAGAAATACTGT+CGG + chr2_4:39997494-39997513 Msa0327990:intron 30.0%
!!! GTACTGACTTCAAGAATTTT+AGG + chr2_4:39997589-39997608 Msa0327990:intron 30.0%
TATCATTTATTGCAGTGATG+TGG + chr2_4:39997683-39997702 Msa0327990:intron 30.0%
TGGAAGAAATAGAAGACATT+GGG + chr2_4:39998122-39998141 Msa0327990:intron 30.0%
AATAAAAAATCCCCCTCATT+TGG + chr2_4:39998179-39998198 Msa0327990:intron 30.0%
ATAAAAAATCCCCCTCATTT+GGG + chr2_4:39998180-39998199 Msa0327990:intron 30.0%
GGGAACTCAAAAATTGTATT+GGG + chr2_4:39998202-39998221 Msa0327990:intron 30.0%
GGAACTCAAAAATTGTATTG+GGG + chr2_4:39998203-39998222 Msa0327990:intron 30.0%
GAACTCAAAAATTGTATTGG+GGG + chr2_4:39998204-39998223 Msa0327990:intron 30.0%
GATATCTAAGTGAAACAATC+AGG + chr2_4:39998510-39998529 Msa0327990:intron 30.0%
! ATCAATGTTAGAGCAAGTTT+TGG - chr2_4:39998616-39998635 None:intergenic 30.0%
!!! AACACAGACTTTTTCATCAG+TGG + chr2_4:39993224-39993243 Msa0327990:CDS 35.0%
GAACATAATGTCCTGAAACA+AGG - chr2_4:39993335-39993354 None:intergenic 35.0%
ACAATAACTTGGCTAAGTTG+CGG - chr2_4:39993357-39993376 None:intergenic 35.0%
GAAAATCACATAGCAGATTC+AGG - chr2_4:39993635-39993654 None:intergenic 35.0%
GGAAATTGCCTATGAAGAAA+TGG + chr2_4:39993695-39993714 Msa0327990:CDS 35.0%
! GATGATTTTCCTGTTTGTGA+TGG + chr2_4:39993862-39993881 Msa0327990:intron 35.0%
ATGCAGAATGATAGAGTACA+TGG + chr2_4:39993994-39994013 Msa0327990:intron 35.0%
TGCAGAATGATAGAGTACAT+GGG + chr2_4:39993995-39994014 Msa0327990:intron 35.0%
! ACTTTTGTTAGTAAGCGACT+AGG + chr2_4:39994027-39994046 Msa0327990:intron 35.0%
AACTGTTGTGATGCTGAAAA+CGG - chr2_4:39994292-39994311 None:intergenic 35.0%
ACAGTTGGATATTCTCTTTG+AGG + chr2_4:39994306-39994325 Msa0327990:intron 35.0%
CAGTTGGATATTCTCTTTGA+GGG + chr2_4:39994307-39994326 Msa0327990:intron 35.0%
! ACTGATTCAGTTTGAATCTC+TGG + chr2_4:39994333-39994352 Msa0327990:intron 35.0%
TCTCTGGTAACACCAATTAA+TGG + chr2_4:39994349-39994368 Msa0327990:intron 35.0%
TGAAATAGCCATAGATGAAG+AGG - chr2_4:39994496-39994515 None:intergenic 35.0%
! CTAATTTTCAACACATGCGA+TGG + chr2_4:39994579-39994598 Msa0327990:intron 35.0%
!!! GATAAGTTTTGGACCAATGT+AGG - chr2_4:39995080-39995099 None:intergenic 35.0%
!!! GGAGACTTTTCTTGTTATTG+AGG + chr2_4:39995144-39995163 Msa0327990:intron 35.0%
TTTACTAGCCAAGACTCATA+TGG - chr2_4:39995328-39995347 None:intergenic 35.0%
CGACTTAGATCAATGTGTAA+AGG + chr2_4:39995445-39995464 Msa0327990:intron 35.0%
TAACCACATATAGCAAAGGT+AGG - chr2_4:39995576-39995595 None:intergenic 35.0%
TACGTAACCACATATAGCAA+AGG - chr2_4:39995580-39995599 None:intergenic 35.0%
CATTAGTTGTTAAGCCTGTA+AGG - chr2_4:39995777-39995796 None:intergenic 35.0%
! TACACAGAAAGAGTATGATG+GGG - chr2_4:39995826-39995845 None:intergenic 35.0%
! GTTACACAGAAAGAGTATGA+TGG - chr2_4:39995828-39995847 None:intergenic 35.0%
! AAGTGGACCCCTATAATTTT+TGG + chr2_4:39995883-39995902 Msa0327990:intron 35.0%
! ATAAGTGTACGATGCAGTTT+TGG + chr2_4:39995922-39995941 Msa0327990:intron 35.0%
! TAAGTGTACGATGCAGTTTT+GGG + chr2_4:39995923-39995942 Msa0327990:intron 35.0%
TTTGGGCATGGAAATATGTT+AGG + chr2_4:39995940-39995959 Msa0327990:intron 35.0%
TTGGGCATGGAAATATGTTA+GGG + chr2_4:39995941-39995960 Msa0327990:intron 35.0%
TAAATTAGAAAGGAGGAACC+TGG + chr2_4:39996031-39996050 Msa0327990:intron 35.0%
!! ACCTGGATTAGTATTACTTG+TGG + chr2_4:39996048-39996067 Msa0327990:intron 35.0%
GTGGCAGTATAGTAATATTC+AGG + chr2_4:39996067-39996086 Msa0327990:intron 35.0%
AATCAATTCGTGCAGTAAGA+GGG + chr2_4:39996144-39996163 Msa0327990:intron 35.0%
TTTGGAGGGAATGAGAAAAA+TGG + chr2_4:39996183-39996202 Msa0327990:intron 35.0%
CTAAAAAAATGCAATGGGGA+AGG - chr2_4:39996327-39996346 None:intergenic 35.0%
GGAGCTAAAAAAATGCAATG+GGG - chr2_4:39996331-39996350 None:intergenic 35.0%
GGGAGCTAAAAAAATGCAAT+GGG - chr2_4:39996332-39996351 None:intergenic 35.0%
!!! TTTTTTTAGCTCCCCCATAT+TGG + chr2_4:39996338-39996357 Msa0327990:intron 35.0%
!!! AGAGTTTTGAGGATAAAGGA+CGG - chr2_4:39996448-39996467 None:intergenic 35.0%
! GGAATTTAGTTTCGTGAAAC+AGG + chr2_4:39996588-39996607 Msa0327990:intron 35.0%
TGAACATTCTTACATGTCAG+AGG + chr2_4:39996624-39996643 Msa0327990:intron 35.0%
GAACATTCTTACATGTCAGA+GGG + chr2_4:39996625-39996644 Msa0327990:intron 35.0%
AAAGATCATTGAGACTTGAG+AGG + chr2_4:39996830-39996849 Msa0327990:intron 35.0%
! ATTTTCATAAAGGGTGAACC+CGG - chr2_4:39996858-39996877 None:intergenic 35.0%
CATTTATCAGGCTTATGATC+TGG - chr2_4:39997338-39997357 None:intergenic 35.0%
CAGATCATAAGCCTGATAAA+TGG + chr2_4:39997336-39997355 Msa0327990:CDS 35.0%
ATTTATTGCAGTGATGTGGT+AGG + chr2_4:39997687-39997706 Msa0327990:intron 35.0%
!! TATATATTGAGCACTGACGT+AGG - chr2_4:39997732-39997751 None:intergenic 35.0%
TATCGTGAACTTATTCCTAC+CGG + chr2_4:39997750-39997769 Msa0327990:CDS 35.0%
TTGGCGCCTAAAATTACTTT+AGG - chr2_4:39997837-39997856 None:intergenic 35.0%
! AAAGTAATTTTAGGCGCCAA+AGG + chr2_4:39997837-39997856 Msa0327990:intron 35.0%
! AAGTAATTTTAGGCGCCAAA+GGG + chr2_4:39997838-39997857 Msa0327990:intron 35.0%
CACAAAAATGTAAGTCCCTT+TGG - chr2_4:39997856-39997875 None:intergenic 35.0%
TCCTCAATTCATCTATGTCA+TGG + chr2_4:39997878-39997897 Msa0327990:intron 35.0%
!! TCGTTTAGTTAGGCTTTGTT+TGG + chr2_4:39998048-39998067 Msa0327990:intron 35.0%
!! CGTTTAGTTAGGCTTTGTTT+GGG + chr2_4:39998049-39998068 Msa0327990:intron 35.0%
GTGGAAGAAATAGAAGACAT+TGG + chr2_4:39998121-39998140 Msa0327990:intron 35.0%
AAGAAATAGAAGACATTGGG+AGG + chr2_4:39998125-39998144 Msa0327990:intron 35.0%
TAAAAAATCCCCCTCATTTG+GGG + chr2_4:39998181-39998200 Msa0327990:intron 35.0%
GGGGAACTCAAAAATTGTAT+TGG + chr2_4:39998201-39998220 Msa0327990:intron 35.0%
TCAAAAATTGTATTGGGGGA+GGG + chr2_4:39998208-39998227 Msa0327990:intron 35.0%
TCTAAGTGAAACAATCAGGT+AGG + chr2_4:39998514-39998533 Msa0327990:intron 35.0%
TTGATCAAAGCCTTCTTAGA+AGG + chr2_4:39998631-39998650 Msa0327990:CDS 35.0%
CGCAAATGGTGAGATAGATA+AGG + chr2_4:39993266-39993285 Msa0327990:intron 40.0%
AATATACACTTGTCTGCTGC+AGG + chr2_4:39993515-39993534 Msa0327990:intron 40.0%
TTGATCCGAAATCATACCAC+TGG - chr2_4:39993601-39993620 None:intergenic 40.0%
GAGGGGTAAAGATACTGTAT+GGG - chr2_4:39993731-39993750 None:intergenic 40.0%
TGATTATCATTCGCATGGCA+AGG - chr2_4:39993753-39993772 None:intergenic 40.0%
!! GGACTTCTCTGAAATCTTCA+TGG + chr2_4:39994211-39994230 Msa0327990:intron 40.0%
!! AGTTTCTAAAGCTATCGCGA+TGG + chr2_4:39994242-39994261 Msa0327990:intron 40.0%
! GTTTTCAGCATCACAACAGT+TGG + chr2_4:39994291-39994310 Msa0327990:intron 40.0%
! AGAGGTGTGAGTTAGATTCA+GGG - chr2_4:39994478-39994497 None:intergenic 40.0%
! AAGAGGTGTGAGTTAGATTC+AGG - chr2_4:39994479-39994498 None:intergenic 40.0%
AACTCACACCTCTTCATCTA+TGG + chr2_4:39994485-39994504 Msa0327990:intron 40.0%
AACACATGCGATGGATCTTT+AGG + chr2_4:39994588-39994607 Msa0327990:intron 40.0%
AGTGAGTGGAATTACAGTGT+CGG - chr2_4:39994723-39994742 None:intergenic 40.0%
! TGTTTTCCCTGTGGCATAAT+CGG + chr2_4:39994750-39994769 Msa0327990:intron 40.0%
! GAATTTTGTCTCATGGTCTC+CGG + chr2_4:39994854-39994873 Msa0327990:intron 40.0%
!! TCAGTACAAATGGTAGTGGA+AGG - chr2_4:39994886-39994905 None:intergenic 40.0%
AGGTTCAGTACAAATGGTAG+TGG - chr2_4:39994890-39994909 None:intergenic 40.0%
CACAAGAGGTTCAGTACAAA+TGG - chr2_4:39994896-39994915 None:intergenic 40.0%
! TCTGAAACAGCTAGTTGAGT+TGG + chr2_4:39995123-39995142 Msa0327990:intron 40.0%
!! AGATTCAGATTTTCAGGCAG+AGG - chr2_4:39995270-39995289 None:intergenic 40.0%
AGCACTTCACATCATGTTCT+TGG + chr2_4:39995547-39995566 Msa0327990:intron 40.0%
! CTTCCTACCTTTGCTATATG+TGG + chr2_4:39995570-39995589 Msa0327990:intron 40.0%
!! GTCCACTTTTAAGCATACCT+AGG - chr2_4:39995871-39995890 None:intergenic 40.0%
TCCTAACACAATTCCTGACT+TGG + chr2_4:39995974-39995993 Msa0327990:intron 40.0%
TCCAAGTCAGGAATTGTGTT+AGG - chr2_4:39995978-39995997 None:intergenic 40.0%
GCCACAAGTAATACTAATCC+AGG - chr2_4:39996052-39996071 None:intergenic 40.0%
ATATTCAGGAGAGGGAGAAA+AGG + chr2_4:39996081-39996100 Msa0327990:intron 40.0%
GTTTGAGCATCATGATGCAT+AGG + chr2_4:39996106-39996125 Msa0327990:intron 40.0%
GAATCAATTCGTGCAGTAAG+AGG + chr2_4:39996143-39996162 Msa0327990:intron 40.0%
ATCAATTCGTGCAGTAAGAG+GGG + chr2_4:39996145-39996164 Msa0327990:intron 40.0%
GGGGAGCTAAAAAAATGCAA+TGG - chr2_4:39996333-39996352 None:intergenic 40.0%
ACTAAAACCCTCCAATATGG+GGG - chr2_4:39996352-39996371 None:intergenic 40.0%
GACTAAAACCCTCCAATATG+GGG - chr2_4:39996353-39996372 None:intergenic 40.0%
GGACTAAAACCCTCCAATAT+GGG - chr2_4:39996354-39996373 None:intergenic 40.0%
TGGACTAAAACCCTCCAATA+TGG - chr2_4:39996355-39996374 None:intergenic 40.0%
!!! AGGGAGAGTTTTGAGGATAA+AGG - chr2_4:39996452-39996471 None:intergenic 40.0%
GCTATATTTGGGAGTTTGGA+GGG - chr2_4:39996481-39996500 None:intergenic 40.0%
TTGGGCTATATTTGGGAGTT+TGG - chr2_4:39996485-39996504 None:intergenic 40.0%
GTCCATCTTGGGCTATATTT+GGG - chr2_4:39996492-39996511 None:intergenic 40.0%
CAAACTATCAGGTCCATCTT+GGG - chr2_4:39996503-39996522 None:intergenic 40.0%
TCAAACTATCAGGTCCATCT+TGG - chr2_4:39996504-39996523 None:intergenic 40.0%
GTGGAGATTCACTGGAAAAA+GGG + chr2_4:39996567-39996586 Msa0327990:intron 40.0%
AGTTGTCTGCCGATATAACA+TGG + chr2_4:39996704-39996723 Msa0327990:intron 40.0%
ACCCTGCAACCATGTTATAT+CGG - chr2_4:39996716-39996735 None:intergenic 40.0%
GATTGTTATGGACAGTACGT+AGG - chr2_4:39997045-39997064 None:intergenic 40.0%
TATTCCAGCTACAGATACTG+AGG + chr2_4:39997117-39997136 Msa0327990:intron 40.0%
TGTATACTTCAATCGACCAG+AGG + chr2_4:39997289-39997308 Msa0327990:CDS 40.0%
ATCGTGAACTTATTCCTACC+GGG + chr2_4:39997751-39997770 Msa0327990:CDS 40.0%
AAATGATATGCGAGTGACAG+TGG - chr2_4:39997810-39997829 None:intergenic 40.0%
GCCATGACATAGATGAATTG+AGG - chr2_4:39997882-39997901 None:intergenic 40.0%
ATTCATCTATGTCATGGCAG+TGG + chr2_4:39997884-39997903 Msa0327990:intron 40.0%
AATAGCGAGTAGATGCTACT+GGG - chr2_4:39997928-39997947 None:intergenic 40.0%
!! TGGAAGCTTGAGAGCATTTA+TGG - chr2_4:39997951-39997970 None:intergenic 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + chr2_4:39998056-39998075 Msa0327990:intron 40.0%
!!! GAGGGTTTTGGAAAAAAGGA+AGG + chr2_4:39998093-39998112 Msa0327990:intron 40.0%
AAAAAATCCCCCTCATTTGG+GGG + chr2_4:39998182-39998201 Msa0327990:intron 40.0%
!!! TTTTGAGTTCCCCCAAATGA+GGG - chr2_4:39998194-39998213 None:intergenic 40.0%
!!! TTTTTGAGTTCCCCCAAATG+AGG - chr2_4:39998195-39998214 None:intergenic 40.0%
CTCAAAAATTGTATTGGGGG+AGG + chr2_4:39998207-39998226 Msa0327990:intron 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG - chr2_4:39998432-39998451 None:intergenic 40.0%
AAGTGAAACAATCAGGTAGG+AGG + chr2_4:39998517-39998536 Msa0327990:intron 40.0%
GACTCACGTTTGTCAATGTA+CGG + chr2_4:39998560-39998579 Msa0327990:CDS 40.0%
ACTCACGTTTGTCAATGTAC+GGG + chr2_4:39998561-39998580 Msa0327990:CDS 40.0%
GCTATGCAGGTAAACGCAAA+TGG + chr2_4:39993252-39993271 Msa0327990:intron 45.0%
TGGGGATGTTCCAGTTTATG+TGG + chr2_4:39993574-39993593 Msa0327990:CDS 45.0%
TTCCAGTTTATGTGGTCCAG+TGG + chr2_4:39993582-39993601 Msa0327990:CDS 45.0%
TACCACTGGACCACATAAAC+TGG - chr2_4:39993587-39993606 None:intergenic 45.0%
GTGGTCCAGTGGTATGATTT+CGG + chr2_4:39993593-39993612 Msa0327990:CDS 45.0%
! GAATCTGATGGGTGTTCAAC+TGG - chr2_4:39993660-39993679 None:intergenic 45.0%
GGAGGGGTAAAGATACTGTA+TGG - chr2_4:39993732-39993751 None:intergenic 45.0%
TATCATTCGCATGGCAAGGA+GGG - chr2_4:39993749-39993768 None:intergenic 45.0%
TTATCATTCGCATGGCAAGG+AGG - chr2_4:39993750-39993769 None:intergenic 45.0%
CCAGCTGATTATCATTCGCA+TGG - chr2_4:39993758-39993777 None:intergenic 45.0%
CCATGCGAATGATAATCAGC+TGG + chr2_4:39993755-39993774 Msa0327990:CDS 45.0%
TGTACTGCACCATCACAAAC+AGG - chr2_4:39993874-39993893 None:intergenic 45.0%
!! GAAGGAGCACTCCATTTATC+TGG - chr2_4:39993960-39993979 None:intergenic 45.0%
! GAACTAGCATTTTGAACCCG+AGG - chr2_4:39994545-39994564 None:intergenic 45.0%
TGAGTGGAATTACAGTGTCG+GGG - chr2_4:39994721-39994740 None:intergenic 45.0%
GTGAGTGGAATTACAGTGTC+GGG - chr2_4:39994722-39994741 None:intergenic 45.0%
GAAAACAGAGTGGAAGTGAG+TGG - chr2_4:39994737-39994756 None:intergenic 45.0%
!! TGGTAGTGGAAGGATAAGAC+CGG - chr2_4:39994876-39994895 None:intergenic 45.0%
CATGACTTCCTCTCCTACAT+TGG + chr2_4:39995064-39995083 Msa0327990:intron 45.0%
!! GTTTTGGACCAATGTAGGAG+AGG - chr2_4:39995075-39995094 None:intergenic 45.0%
TCTACGCCACATGACTGAAA+TGG + chr2_4:39995221-39995240 Msa0327990:intron 45.0%
CAGAAGCCATTTCAGTCATG+TGG - chr2_4:39995230-39995249 None:intergenic 45.0%
ACTGAAATGGCTTCTGCCAA+AGG + chr2_4:39995234-39995253 Msa0327990:intron 45.0%
CAGAGGAATTGAGATGCCTT+TGG - chr2_4:39995253-39995272 None:intergenic 45.0%
GAGTCTTGGCTAGTAAACCT+TGG + chr2_4:39995331-39995350 Msa0327990:intron 45.0%
! AGTTTGGGACAGAAGGAGTT+TGG + chr2_4:39995362-39995381 Msa0327990:intron 45.0%
TTGAATCCTGGAAGCAGAAC+CGG + chr2_4:39995395-39995414 Msa0327990:intron 45.0%
GGCCTAGGTATGCTTAAAAG+TGG + chr2_4:39995866-39995885 Msa0327990:intron 45.0%
ATGCAAACAAGGTCCAAGTC+AGG - chr2_4:39995990-39996009 None:intergenic 45.0%
! TGGACCTTGTTTGCATACGA+TGG + chr2_4:39995994-39996013 Msa0327990:intron 45.0%
CTGTCCATCGTATGCAAACA+AGG - chr2_4:39996001-39996020 None:intergenic 45.0%
TTGCATACGATGGACAGCTA+TGG + chr2_4:39996004-39996023 Msa0327990:intron 45.0%
CATCATGATGCATAGGTGCA+GGG + chr2_4:39996113-39996132 Msa0327990:intron 45.0%
! AATGCAATGGGGAAGGGTTT+TGG - chr2_4:39996320-39996339 None:intergenic 45.0%
!!! TTTTAGCTCCCCCATATTGG+AGG + chr2_4:39996341-39996360 Msa0327990:intron 45.0%
! TTTAGCTCCCCCATATTGGA+GGG + chr2_4:39996342-39996361 Msa0327990:intron 45.0%
TTTGGGAGTTTGGAGGGAAA+GGG - chr2_4:39996475-39996494 None:intergenic 45.0%
ATTTGGGAGTTTGGAGGGAA+AGG - chr2_4:39996476-39996495 None:intergenic 45.0%
GGCTATATTTGGGAGTTTGG+AGG - chr2_4:39996482-39996501 None:intergenic 45.0%
CTCCCAAATATAGCCCAAGA+TGG + chr2_4:39996487-39996506 Msa0327990:intron 45.0%
GGTCCATCTTGGGCTATATT+TGG - chr2_4:39996493-39996512 None:intergenic 45.0%
CTGAAGGTTGCAACTAATGC+AGG + chr2_4:39996545-39996564 Msa0327990:intron 45.0%
AAGGTTGCAACTAATGCAGG+TGG + chr2_4:39996548-39996567 Msa0327990:intron 45.0%
TAATGCAGGTGGAGATTCAC+TGG + chr2_4:39996559-39996578 Msa0327990:intron 45.0%
GGTGGAGATTCACTGGAAAA+AGG + chr2_4:39996566-39996585 Msa0327990:intron 45.0%
TGCCGATATAACATGGTTGC+AGG + chr2_4:39996711-39996730 Msa0327990:intron 45.0%
GCCGATATAACATGGTTGCA+GGG + chr2_4:39996712-39996731 Msa0327990:intron 45.0%
CATTGAGACTTGAGAGGATC+CGG + chr2_4:39996836-39996855 Msa0327990:intron 45.0%
ATTGAGACTTGAGAGGATCC+GGG + chr2_4:39996837-39996856 Msa0327990:intron 45.0%
TATGCCTCAGTATCTGTAGC+TGG - chr2_4:39997124-39997143 None:intergenic 45.0%
ATGCTGTGTTTCTCTGTGCA+AGG - chr2_4:39997269-39997288 None:intergenic 45.0%
GATCAACATGTAGAGCCCTT+TGG - chr2_4:39997316-39997335 None:intergenic 45.0%
GTGATGTGGTAGGTACTAAC+TGG + chr2_4:39997697-39997716 Msa0327990:intron 45.0%
TGTGGTAGGTACTAACTGGA+AGG + chr2_4:39997701-39997720 Msa0327990:CDS 45.0%
GAATATCCATATTCGCAGCC+CGG - chr2_4:39997772-39997791 None:intergenic 45.0%
GGCTGCGAATATGGATATTC+AGG + chr2_4:39997772-39997791 Msa0327990:CDS 45.0%
GAATAGCGAGTAGATGCTAC+TGG - chr2_4:39997929-39997948 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr2_4:39998060-39998079 Msa0327990:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG + chr2_4:39998061-39998080 Msa0327990:intron 45.0%
!!! AGGGGAGGGTTTTGGAAAAA+AGG + chr2_4:39998089-39998108 Msa0327990:intron 45.0%
GGAAAAAAGGAAGGAGCAAG+TGG + chr2_4:39998102-39998121 Msa0327990:intron 45.0%
ATAGAAGACATTGGGAGGAG+AGG + chr2_4:39998130-39998149 Msa0327990:intron 45.0%
TAGAAGACATTGGGAGGAGA+GGG + chr2_4:39998131-39998150 Msa0327990:intron 45.0%
! TTTGAGTTCCCCCAAATGAG+GGG - chr2_4:39998193-39998212 None:intergenic 45.0%
! ATTGTATTGGGGGAGGGTTT+TGG + chr2_4:39998214-39998233 Msa0327990:intron 45.0%
! TTGTATTGGGGGAGGGTTTT+GGG + chr2_4:39998215-39998234 Msa0327990:intron 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr2_4:39998061-39998080 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr2_4:39998060-39998079 None:intergenic 45.0%
GAAACAATCAGGTAGGAGGA+TGG + chr2_4:39998521-39998540 Msa0327990:intron 45.0%
CTCACGTTTGTCAATGTACG+GGG + chr2_4:39998562-39998581 Msa0327990:CDS 45.0%
!! GCAAGTTTTGGTCTATGCAG+AGG - chr2_4:39998604-39998623 None:intergenic 45.0%
! CATGGAGGTTCCTTCTAAGA+AGG - chr2_4:39998644-39998663 None:intergenic 45.0%
!!! TAATTTATTTTCAAATTAAT+AGG - chr2_4:39996984-39997003 None:intergenic 5.0%
ATCAGTGGTGAGAGCTATGC+AGG + chr2_4:39993239-39993258 Msa0327990:CDS 50.0%
TACACTTGTCTGCTGCAGGT+AGG + chr2_4:39993519-39993538 Msa0327990:intron 50.0%
ATCATTCGCATGGCAAGGAG+GGG - chr2_4:39993748-39993767 None:intergenic 50.0%
! TGGCACATGAGAGTGTACCT+CGG + chr2_4:39994525-39994544 Msa0327990:intron 50.0%
! GAGTGGAATTACAGTGTCGG+GGG - chr2_4:39994720-39994739 None:intergenic 50.0%
! CTTCCACTCTGTTTTCCCTG+TGG + chr2_4:39994741-39994760 Msa0327990:intron 50.0%
ATGCCACAGGGAAAACAGAG+TGG - chr2_4:39994747-39994766 None:intergenic 50.0%
! TCCTCACCGATTATGCCACA+GGG - chr2_4:39994759-39994778 None:intergenic 50.0%
AGAGTTCGGAATTCGGCTGT+AGG + chr2_4:39995611-39995630 Msa0327990:intron 50.0%
! CTGTAGGTGCAGCTTTAGCA+CGG + chr2_4:39995627-39995646 Msa0327990:intron 50.0%
GTGCACTGTAACAGCCTTAC+AGG + chr2_4:39995760-39995779 Msa0327990:intron 50.0%
TTCTGTGTAACGGTCCTCCT+AGG + chr2_4:39995837-39995856 Msa0327990:intron 50.0%
!!! GTACGATGCAGTTTTGGGCA+TGG + chr2_4:39995928-39995947 Msa0327990:intron 50.0%
GCATCATGATGCATAGGTGC+AGG + chr2_4:39996112-39996131 Msa0327990:intron 50.0%
TGCAGTAAGAGGGGAAGAGA+GGG + chr2_4:39996154-39996173 Msa0327990:intron 50.0%
! GAAAGGGAGGGAGAGTTTTG+AGG - chr2_4:39996459-39996478 None:intergenic 50.0%
ACCAAGTGGGAGAACTCTGA+AGG + chr2_4:39996529-39996548 Msa0327990:intron 50.0%
ACCTTCAGAGTTCTCCCACT+TGG - chr2_4:39996533-39996552 None:intergenic 50.0%
TCGGCAGACAACTGAAACGT+TGG - chr2_4:39996697-39996716 None:intergenic 50.0%
TCAATCGACCAGAGGTCCAA+AGG + chr2_4:39997297-39997316 Msa0327990:CDS 50.0%
CAATCGACCAGAGGTCCAAA+GGG + chr2_4:39997298-39997317 Msa0327990:CDS 50.0%
! CTGCAGGTCTGCCATTTATC+AGG - chr2_4:39997350-39997369 None:intergenic 50.0%
CTGATAAATGGCAGACCTGC+AGG + chr2_4:39997348-39997367 Msa0327990:CDS 50.0%
AAATGGCAGACCTGCAGGTA+AGG + chr2_4:39997353-39997372 Msa0327990:intron 50.0%
!! CTGTTTTGAGCCTTACCTGC+AGG - chr2_4:39997366-39997385 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr2_4:39998059-39998078 Msa0327990:intron 50.0%
TTGAGTTCCCCCAAATGAGG+GGG - chr2_4:39998192-39998211 None:intergenic 50.0%
! TGTATTGGGGGAGGGTTTTG+GGG + chr2_4:39998216-39998235 Msa0327990:intron 50.0%
TTTGGGAGTTTGGAGGGGAA+GGG - chr2_4:39998422-39998441 None:intergenic 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr2_4:39998059-39998078 None:intergenic 50.0%
GGATGGACCCAAGAATACGA+CGG + chr2_4:39998538-39998557 Msa0327990:CDS 50.0%
CGTGAGTCCGTCGTATTCTT+GGG - chr2_4:39998548-39998567 None:intergenic 50.0%
ACGTGAGTCCGTCGTATTCT+TGG - chr2_4:39998549-39998568 None:intergenic 50.0%
TTTGTCAATGTACGGGGTGC+AGG + chr2_4:39998568-39998587 Msa0327990:CDS 50.0%
TTGTCAATGTACGGGGTGCA+GGG + chr2_4:39998569-39998588 Msa0327990:CDS 50.0%
TGGTTCAAGAGTTGGCATGG+AGG - chr2_4:39998659-39998678 None:intergenic 50.0%
AGTGTGCGTGGTTCAAGAGT+TGG - chr2_4:39998667-39998686 None:intergenic 50.0%
! GGCACATGAGAGTGTACCTC+GGG + chr2_4:39994526-39994545 Msa0327990:intron 55.0%
! GAATTACAGTGTCGGGGGCA+AGG - chr2_4:39994715-39994734 None:intergenic 55.0%
TCCCTGTGGCATAATCGGTG+AGG + chr2_4:39994755-39994774 Msa0327990:intron 55.0%
! GTCCTCACCGATTATGCCAC+AGG - chr2_4:39994760-39994779 None:intergenic 55.0%
!! TTACTGCCGGTTCTGCTTCC+AGG - chr2_4:39995404-39995423 None:intergenic 55.0%
TGTGTAACGGTCCTCCTAGG+AGG + chr2_4:39995840-39995859 Msa0327990:intron 55.0%
TAACGGTCCTCCTAGGAGGA+AGG + chr2_4:39995844-39995863 Msa0327990:intron 55.0%
AACGGTCCTCCTAGGAGGAA+GGG + chr2_4:39995845-39995864 Msa0327990:intron 55.0%
ATACCTAGGCCCTTCCTCCT+AGG - chr2_4:39995857-39995876 None:intergenic 55.0%
GATGCATAGGTGCAGGGTGA+AGG + chr2_4:39996119-39996138 Msa0327990:intron 55.0%
GTGCAGTAAGAGGGGAAGAG+AGG + chr2_4:39996153-39996172 Msa0327990:intron 55.0%
GCAGTAAGAGGGGAAGAGAG+GGG + chr2_4:39996155-39996174 Msa0327990:intron 55.0%
AAGAGAGGGGAGGACTTTGG+AGG + chr2_4:39996168-39996187 Msa0327990:intron 55.0%
AGAGAGGGGAGGACTTTGGA+GGG + chr2_4:39996169-39996188 Msa0327990:intron 55.0%
GGAGTTTGGAGGGAAAGGGA+GGG - chr2_4:39996471-39996490 None:intergenic 55.0%
CTGAAACGTTGGCAGCGTGA+CGG - chr2_4:39996686-39996705 None:intergenic 55.0%
TGTAGAGCCCTTTGGACCTC+TGG - chr2_4:39997308-39997327 None:intergenic 55.0%
TTCCTACCGGGCTGCGAATA+TGG + chr2_4:39997763-39997782 Msa0327990:CDS 55.0%
ATCCATATTCGCAGCCCGGT+AGG - chr2_4:39997768-39997787 None:intergenic 55.0%
CATCATACCATGCACGCCAG+GGG - chr2_4:39997982-39998001 None:intergenic 55.0%
CCATCATACCATGCACGCCA+GGG - chr2_4:39997983-39998002 None:intergenic 55.0%
ACCATCATACCATGCACGCC+AGG - chr2_4:39997984-39998003 None:intergenic 55.0%
TGGCGTGCATGGTATGATGG+TGG + chr2_4:39997983-39998002 Msa0327990:intron 55.0%
GGCGTGCATGGTATGATGGT+GGG + chr2_4:39997984-39998003 Msa0327990:intron 55.0%
! GCGTGCATGGTATGATGGTG+GGG + chr2_4:39997985-39998004 Msa0327990:intron 55.0%
!! TGCATGGTATGATGGTGGGG+AGG + chr2_4:39997988-39998007 Msa0327990:intron 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG + chr2_4:39998064-39998083 Msa0327990:intron 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG + chr2_4:39998065-39998084 Msa0327990:intron 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG + chr2_4:39998066-39998085 Msa0327990:intron 55.0%
ACATTGGGAGGAGAGGGCTT+TGG + chr2_4:39998137-39998156 Msa0327990:intron 55.0%
!! GTATTGGGGGAGGGTTTTGG+GGG + chr2_4:39998217-39998236 Msa0327990:intron 55.0%
!!! TATTGGGGGAGGGTTTTGGG+GGG + chr2_4:39998218-39998237 Msa0327990:intron 55.0%
!!! AGGGTTTTGGGGGGTTATGG+AGG + chr2_4:39998227-39998246 Msa0327990:intron 55.0%
!!! GGGTTTTGGGGGGTTATGGA+GGG + chr2_4:39998228-39998247 Msa0327990:intron 55.0%
!! AAGGGAGGGGAAGGTTTTGG+GGG - chr2_4:39998404-39998423 None:intergenic 55.0%
! GAAGGGAGGGGAAGGTTTTG+GGG - chr2_4:39998405-39998424 None:intergenic 55.0%
! GGAAGGGAGGGGAAGGTTTT+GGG - chr2_4:39998406-39998425 None:intergenic 55.0%
GTTTGGGAGTTTGGAGGGGA+AGG - chr2_4:39998065-39998084 None:intergenic 55.0%
GCGTGGTTCAAGAGTTGGCA+TGG - chr2_4:39998662-39998681 None:intergenic 55.0%
! TACAGTGTCGGGGGCAAGGT+GGG - chr2_4:39994711-39994730 None:intergenic 60.0%
! TTACAGTGTCGGGGGCAAGG+TGG - chr2_4:39994712-39994731 None:intergenic 60.0%
GTAAGAGGGGAAGAGAGGGG+AGG + chr2_4:39996158-39996177 Msa0327990:intron 60.0%
GGGAAGAGAGGGGAGGACTT+TGG + chr2_4:39996165-39996184 Msa0327990:intron 60.0%
GGGAGTTTGGAGGGAAAGGG+AGG - chr2_4:39996472-39996491 None:intergenic 60.0%
GGAGCAACAGATCCAGCAGG+TGG - chr2_4:39996665-39996684 None:intergenic 60.0%
GACGGAGCAACAGATCCAGC+AGG - chr2_4:39996668-39996687 None:intergenic 60.0%
AGCTTCCAACTGTGAGCCCC+TGG + chr2_4:39997963-39997982 Msa0327990:intron 60.0%
CCCTGGCGTGCATGGTATGA+TGG + chr2_4:39997980-39997999 Msa0327990:intron 60.0%
! TTGGGAGGAGAGGGCTTTGG+AGG + chr2_4:39998140-39998159 Msa0327990:intron 60.0%
!!! GGGAGGGTTTTGGGGGGTTA+TGG + chr2_4:39998224-39998243 Msa0327990:intron 60.0%
!!! AGGGGAAGGTTTTGGGGGGT+TGG - chr2_4:39998399-39998418 None:intergenic 60.0%
!!! AGGGAGGGGAAGGTTTTGGG+GGG - chr2_4:39998403-39998422 None:intergenic 60.0%
! GGGAAGGGAGGGGAAGGTTT+TGG - chr2_4:39998407-39998426 None:intergenic 60.0%
GAGTTTGGAGGGGAAGGGAG+GGG - chr2_4:39998417-39998436 None:intergenic 60.0%
GGAGTTTGGAGGGGAAGGGA+GGG - chr2_4:39998418-39998437 None:intergenic 60.0%
CCTAGGCCCTTCCTCCTAGG+AGG - chr2_4:39995854-39995873 None:intergenic 65.0%
CCTCCTAGGAGGAAGGGCCT+AGG + chr2_4:39995851-39995870 Msa0327990:intron 65.0%
AGCAGGTGGCAGCAGCTGTG+CGG - chr2_4:39996651-39996670 None:intergenic 65.0%
GGAGTTTGGAGGGGAGGGGA+GGG + chr2_4:39998070-39998089 Msa0327990:intron 65.0%
GAGTTTGGAGGGGAGGGGAG+GGG + chr2_4:39998071-39998090 Msa0327990:intron 65.0%
TTGGAGGGGAAGGGAGGGGA+AGG - chr2_4:39998413-39998432 None:intergenic 65.0%
GGGAGTTTGGAGGGGAAGGG+AGG - chr2_4:39998419-39998438 None:intergenic 65.0%
ATTGCGGCGGTGAGTGTGCG+TGG - chr2_4:39998679-39998698 None:intergenic 65.0%
GTGTCGGGGGCAAGGTGGGA+AGG - chr2_4:39994707-39994726 None:intergenic 70.0%
GCACAGCTGCTGCCACCTGC+TGG + chr2_4:39996650-39996669 Msa0327990:intron 70.0%
GCACGCCAGGGGCTCACAGT+TGG - chr2_4:39997971-39997990 None:intergenic 70.0%
CTGTGAGCCCCTGGCGTGCA+TGG + chr2_4:39997972-39997991 Msa0327990:intron 70.0%
GGGAGTTTGGAGGGGAGGGG+AGG + chr2_4:39998069-39998088 Msa0327990:intron 70.0%
TTTGGAGGGGAGGGGAGGGG+AGG + chr2_4:39998074-39998093 Msa0327990:intron 70.0%
TTGGAGGGGAGGGGAGGGGA+GGG + chr2_4:39998075-39998094 Msa0327990:intron 70.0%
! GGGAGGGGAGGGGAGGGTTT+TGG + chr2_4:39998081-39998100 Msa0327990:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 39993170 39998699 39993170 ID=Msa0327990;Name=Msa0327990
chr2_4 mRNA 39993170 39998699 39993170 ID=Msa0327990-mRNA-1;Parent=Msa0327990;Name=Msa0327990-mRNA-1;_AED=0.38;_eAED=0.38;_QI=0|0|0|1|0.57|0.37|8|0|297
chr2_4 exon 39993170 39993260 39993170 ID=Msa0327990-mRNA-1:exon:12184;Parent=Msa0327990-mRNA-1
chr2_4 exon 39993343 39993428 39993343 ID=Msa0327990-mRNA-1:exon:12185;Parent=Msa0327990-mRNA-1
chr2_4 exon 39993537 39993717 39993537 ID=Msa0327990-mRNA-1:exon:12186;Parent=Msa0327990-mRNA-1
chr2_4 exon 39993727 39993791 39993727 ID=Msa0327990-mRNA-1:exon:12187;Parent=Msa0327990-mRNA-1
chr2_4 exon 39997236 39997369 39997236 ID=Msa0327990-mRNA-1:exon:12188;Parent=Msa0327990-mRNA-1
chr2_4 exon 39997698 39997793 39997698 ID=Msa0327990-mRNA-1:exon:12189;Parent=Msa0327990-mRNA-1
chr2_4 exon 39997904 39997973 39997904 ID=Msa0327990-mRNA-1:exon:12190;Parent=Msa0327990-mRNA-1
chr2_4 exon 39998532 39998699 39998532 ID=Msa0327990-mRNA-1:exon:12191;Parent=Msa0327990-mRNA-1
chr2_4 CDS 39993170 39993260 39993170 ID=Msa0327990-mRNA-1:cds;Parent=Msa0327990-mRNA-1
chr2_4 CDS 39993343 39993428 39993343 ID=Msa0327990-mRNA-1:cds;Parent=Msa0327990-mRNA-1
chr2_4 CDS 39993537 39993717 39993537 ID=Msa0327990-mRNA-1:cds;Parent=Msa0327990-mRNA-1
chr2_4 CDS 39993727 39993791 39993727 ID=Msa0327990-mRNA-1:cds;Parent=Msa0327990-mRNA-1
chr2_4 CDS 39997236 39997369 39997236 ID=Msa0327990-mRNA-1:cds;Parent=Msa0327990-mRNA-1
chr2_4 CDS 39997698 39997793 39997698 ID=Msa0327990-mRNA-1:cds;Parent=Msa0327990-mRNA-1
chr2_4 CDS 39997904 39997973 39997904 ID=Msa0327990-mRNA-1:cds;Parent=Msa0327990-mRNA-1
chr2_4 CDS 39998532 39998699 39998532 ID=Msa0327990-mRNA-1:cds;Parent=Msa0327990-mRNA-1
Gene Sequence

>Msa0327990

GAGGACAATCTCATATTTCTATTGAAGTGGTTTGAGCGTTTTCCCCAGTATAAAAACACAGACTTTTTCATCAGTGGTGAGAGCTATGCAGGACATTATGTTCCGCAACTTAGCCAAGTTATTGTCAATTACAACTCAAATACAAAACAAGATTCTATAAATCTCAAAGGGTACATGGTAGGAAATGCTCTAACAGATGATTTCAGTGATCAATTGGGGATGTTCCAGTTTATGTGGTCCAGTGGTATGATTTCGGATCAAACATTCAAGCTCCTGAATCTGCTATGTGATTTTCAGCCAGTTGAACACCCATCAGATTCATGTAACAAAATCTGGGAAATTGCCTATGAAGAAATGGACCCATACAGTATCTTTACCCCTCCTTGCCATGCGAATGATAATCAGCTGGATAAAAGAAAGCATAGTTTTGGAAGACTCAGAAGTGCGTATGATCCTTGCACAGAGAAACACAGCATTGTATACTTCAATCGACCAGAGGTCCAAAGGGCTCTACATGTTGATCCAGATCATAAGCCTGATAAATGGCAGACCTGCAGTGATGTGGTAGGTACTAACTGGAAGGATTCACCTACGTCAGTGCTCAATATATATCGTGAACTTATTCCTACCGGGCTGCGAATATGGATATTCAGTGGTAATACTGATGCTGTAATCCCAGTAGCATCTACTCGCTATTCCATAAATGCTCTCAAGCTTCCAACTGTAGGAGGATGGACCCAAGAATACGACGGACTCACGTTTGTCAATGTACGGGGTGCAGGGCACGAAGTTCCTCTGCATAGACCAAAACTTGCTCTAACATTGATCAAAGCCTTCTTAGAAGGAACCTCCATGCCAACTCTTGAACCACGCACACTCACCGCCGCAATT
Protein sequence

>Msa0327990

EDNLIFLLKWFERFPQYKNTDFFISGESYAGHYVPQLSQVIVNYNSNTKQDSINLKGYMVGNALTDDFSDQLGMFQFMWSSGMISDQTFKLLNLLCDFQPVEHPSDSCNKIWEIAYEEMDPYSIFTPPCHANDNQLDKRKHSFGRLRSAYDPCTEKHSIVYFNRPEVQRALHVDPDHKPDKWQTCSDVVGTNWKDSPTSVLNIYRELIPTGLRIWIFSGNTDAVIPVASTRYSINALKLPTVGGWTQEYDGLTFVNVRGAGHEVPLHRPKLALTLIKAFLEGTSMPTLEPRTLTAAI