Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458900 | XP_003601934.2 | 80.000 | 335 | 26 | 2 | 3 | 303 | 67 | 394 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458900 | G7J3Q0 | 80.000 | 335 | 26 | 2 | 3 | 303 | 67 | 394 | 0.0 | 520 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1438250 | Msa1458900 | 0.809707 | 1.656159e-50 | -8.615850e-47 |
| Msa1438270 | Msa1458900 | 0.805490 | 1.301561e-49 | -8.615850e-47 |
| Msa0660330 | Msa1458900 | 0.805126 | 1.551846e-49 | -8.615850e-47 |
| Msa0725220 | Msa1458900 | 0.809621 | 1.728151e-50 | -8.615850e-47 |
| Msa0769390 | Msa1458900 | 0.810962 | 8.877516e-51 | -8.615850e-47 |
| Msa0789690 | Msa1458900 | 0.802764 | 4.804843e-49 | -8.615850e-47 |
| Msa0832370 | Msa1458900 | 0.800326 | 1.519136e-48 | -8.615850e-47 |
| Msa0195770 | Msa1458900 | 0.803400 | 3.549282e-49 | -8.615850e-47 |
| Msa1271280 | Msa1458900 | 0.811745 | 6.003229e-51 | -8.615850e-47 |
| Msa1324780 | Msa1458900 | 0.819431 | 1.165864e-52 | -8.615850e-47 |
| Msa0423090 | Msa1458900 | 0.925607 | 1.459487e-90 | -8.615850e-47 |
| Msa0469240 | Msa1458900 | 0.857296 | 1.798354e-62 | -8.615850e-47 |
| Msa1205130 | Msa1458900 | 0.800256 | 1.569875e-48 | -8.615850e-47 |
| Msa0902980 | Msa1458900 | 0.806601 | 7.597961e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458900 | MtrunA17_Chr3g0123841 | 80.000 | 335 | 26 | 2 | 3 | 303 | 67 | 394 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458900 | AT5G10320.6 | 47.458 | 295 | 100 | 4 | 46 | 296 | 12 | 295 | 2.35e-84 | 256 |
| Msa1458900 | AT5G10320.2 | 47.458 | 295 | 100 | 4 | 46 | 296 | 116 | 399 | 1.50e-82 | 254 |
| Msa1458900 | AT5G10320.1 | 47.458 | 295 | 100 | 4 | 46 | 296 | 117 | 400 | 1.60e-82 | 254 |
| Msa1458900 | AT5G10320.3 | 45.729 | 199 | 60 | 3 | 46 | 200 | 116 | 310 | 1.60e-48 | 165 |
| Msa1458900 | AT5G10320.5 | 45.729 | 199 | 60 | 3 | 46 | 200 | 117 | 311 | 1.62e-48 | 165 |
| Msa1458900 | AT5G10320.4 | 45.128 | 195 | 59 | 3 | 46 | 196 | 116 | 306 | 7.38e-46 | 157 |
Find 72 sgRNAs with CRISPR-Local
Find 486 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTCAGAAATGTGTATT+TGG | 0.158135 | tig0039907:+8121 | Msa1458900:three_prime_UTR |
| GTAGAAAGCAACACAAAATT+TGG | 0.212432 | tig0039907:+3786 | Msa1458900:intron |
| CGCATGTTTATCAGAATATA+TGG | 0.213889 | tig0039907:+5275 | Msa1458900:CDS |
| ATCACCTCATCTTTCCTTGT+TGG | 0.304631 | tig0039907:-3686 | None:intergenic |
| TCTTTCAATTTCAGAGTTCT+TGG | 0.308869 | tig0039907:+4402 | Msa1458900:CDS |
| AAGTCTTGACCAATCATAAT+TGG | 0.316188 | tig0039907:-8062 | None:intergenic |
| CACAAGTCTACTGGAATTAC+TGG | 0.342434 | tig0039907:+7645 | Msa1458900:CDS |
| CATGACAGAGCTTTCTTTCA+AGG | 0.348227 | tig0039907:-4013 | None:intergenic |
| TGTTTCTCGACTGACCCATT+TGG | 0.398597 | tig0039907:+3814 | Msa1458900:CDS |
| GTTTCTGATCCAATTATGAT+TGG | 0.402224 | tig0039907:+8053 | Msa1458900:three_prime_UTR |
| GGTTTCGAACAAAATCTTGT+TGG | 0.406007 | tig0039907:+1860 | Msa1458900:intron |
| TAGACACGGGGAAGAGTATT+GGG | 0.416091 | tig0039907:+3989 | Msa1458900:CDS |
| TCTATGTTGGTATGTCAAAC+TGG | 0.422169 | tig0039907:+5314 | Msa1458900:CDS |
| GTTTGACATACCAACATAGA+AGG | 0.422519 | tig0039907:-5311 | None:intergenic |
| ATAGTCACAAGTGGTCCAAA+TGG | 0.426598 | tig0039907:-3829 | None:intergenic |
| TGTTTCCATTTCAAGTGTCT+TGG | 0.429338 | tig0039907:+7937 | Msa1458900:three_prime_UTR |
| ATTACCTTCTTCAGTGGCTT+CGG | 0.429878 | tig0039907:-7704 | None:intergenic |
| TAGAGGGCTGGAGTTGAATT+CGG | 0.452429 | tig0039907:+7974 | Msa1458900:three_prime_UTR |
| GAAGGCCGAGGAGTTGCATA+TGG | 0.458790 | tig0039907:+4375 | Msa1458900:intron |
| CCTAGTCTTCGCAATCTACA+TGG | 0.461264 | tig0039907:-8201 | None:intergenic |
| TTTCACTTTCATTATTTCAC+TGG | 0.477750 | tig0039907:-8028 | None:intergenic |
| AGCCCTCTATCATCGGCATA+TGG | 0.481979 | tig0039907:-7960 | None:intergenic |
| TGGCCATATGCCGATGATAG+AGG | 0.482559 | tig0039907:+7957 | Msa1458900:three_prime_UTR |
| CGGGCTGGATTCCATGCAAA+AGG | 0.483105 | tig0039907:+1958 | Msa1458900:CDS |
| TTCAACTGCCCCTTCTATGT+TGG | 0.484221 | tig0039907:+5301 | Msa1458900:CDS |
| TATGGCCAAGACACTTGAAA+TGG | 0.490544 | tig0039907:-7942 | None:intergenic |
| CCATGTAGATTGCGAAGACT+AGG | 0.493453 | tig0039907:+8201 | Msa1458900:three_prime_UTR |
| ATGAAAACATAGCCATGATC+GGG | 0.494602 | tig0039907:+1939 | Msa1458900:CDS |
| TCCTCATCTTGAATCACAGT+TGG | 0.495108 | tig0039907:-7838 | None:intergenic |
| CATGGAATCCAGCCCGATCA+TGG | 0.498561 | tig0039907:-1951 | None:intergenic |
| TTAGACACGGGGAAGAGTAT+TGG | 0.501793 | tig0039907:+3988 | Msa1458900:CDS |
| CTATCAACTGCAAGGAGCTA+AGG | 0.502607 | tig0039907:+4236 | Msa1458900:CDS |
| AAGCAAGTACACAAGTCTAC+TGG | 0.503759 | tig0039907:+7636 | Msa1458900:CDS |
| TTCAATTTCAGAGTTCTTGG+TGG | 0.505745 | tig0039907:+4405 | Msa1458900:CDS |
| AATCATAATTGGATCAGAAA+CGG | 0.508810 | tig0039907:-8051 | None:intergenic |
| GGTATGTCAAACTGGCTACA+AGG | 0.515574 | tig0039907:+5322 | Msa1458900:CDS |
| ACCAAATTCTGCAGGTGGAA+AGG | 0.517704 | tig0039907:+7783 | Msa1458900:intron |
| TAACAAATTACCTTCTTCAG+TGG | 0.523966 | tig0039907:-7710 | None:intergenic |
| AATGAAAACATAGCCATGAT+CGG | 0.532311 | tig0039907:+1938 | Msa1458900:CDS |
| TAGTCACAAGTGGTCCAAAT+GGG | 0.534054 | tig0039907:-3828 | None:intergenic |
| AAGGTATCAGAGCACCCTCT+TGG | 0.536712 | tig0039907:+7802 | Msa1458900:CDS |
| TGGTAGCTCAGAGATAACTT+TGG | 0.538447 | tig0039907:-7670 | None:intergenic |
| TGTGCCGAAGCCACTGAAGA+AGG | 0.539716 | tig0039907:+7700 | Msa1458900:CDS |
| TCTTATTGATGATGTGATGA+AGG | 0.542228 | tig0039907:+4167 | Msa1458900:CDS |
| ATCAAATATTAACTGTGCAA+TGG | 0.542482 | tig0039907:+8005 | Msa1458900:three_prime_UTR |
| ATGACAGAGCTTTCTTTCAA+GGG | 0.544675 | tig0039907:-4012 | None:intergenic |
| AAACATAGCCATGATCGGGC+TGG | 0.546841 | tig0039907:+1943 | Msa1458900:CDS |
| CAACTCCAGCCCTCTATCAT+CGG | 0.547002 | tig0039907:-7967 | None:intergenic |
| GGCCATATGCCGATGATAGA+GGG | 0.550359 | tig0039907:+7958 | Msa1458900:three_prime_UTR |
| ATATACTTACAAAATCCTCA+AGG | 0.561182 | tig0039907:-1991 | None:intergenic |
| ATATGCCGATGATAGAGGGC+TGG | 0.570702 | tig0039907:+7962 | Msa1458900:three_prime_UTR |
| TGCACTGATAAACGAAGAAG+AGG | 0.571108 | tig0039907:+4034 | Msa1458900:CDS |
| AAACTCCATATGCAACTCCT+CGG | 0.572586 | tig0039907:-4380 | None:intergenic |
| TCCAACTGTGATTCAAGATG+AGG | 0.586293 | tig0039907:+7837 | Msa1458900:CDS |
| TAGATTGCGAAGACTAGGAA+TGG | 0.592155 | tig0039907:+8206 | Msa1458900:three_prime_UTR |
| TAACTGAAGAACTTAGACAC+GGG | 0.593865 | tig0039907:+3976 | Msa1458900:CDS |
| CAGAGCACCCTCTTGGTACG+TGG | 0.604824 | tig0039907:+7809 | Msa1458900:CDS |
| AAAGGCAAATTCTACCCTTG+AGG | 0.610363 | tig0039907:+1976 | Msa1458900:CDS |
| CTTCTTCTCTATCAACTGCA+AGG | 0.611861 | tig0039907:+4228 | Msa1458900:CDS |
| GTATGTCAAACTGGCTACAA+GGG | 0.623778 | tig0039907:+5323 | Msa1458900:CDS |
| TATACTTACAAAATCCTCAA+GGG | 0.623941 | tig0039907:-1990 | None:intergenic |
| GTTGCAGAACAAGAGAGTAA+TGG | 0.624688 | tig0039907:+105 | Msa1458900:CDS |
| TTAGGCAAAGTGCATTACTG+AGG | 0.636995 | tig0039907:+7609 | Msa1458900:intron |
| AAATACTTGATCTGTGTCAG+AGG | 0.640305 | tig0039907:+7896 | Msa1458900:exon |
| TTTGACATACCAACATAGAA+GGG | 0.652525 | tig0039907:-5310 | None:intergenic |
| TTGACATACCAACATAGAAG+GGG | 0.668333 | tig0039907:-5309 | None:intergenic |
| ATTTGCTGCAAACACCAACA+AGG | 0.670765 | tig0039907:+3672 | Msa1458900:CDS |
| GGAATACACCACGTACCAAG+AGG | 0.678597 | tig0039907:-7817 | None:intergenic |
| AACACCAACAAGGAAAGATG+AGG | 0.680119 | tig0039907:+3682 | Msa1458900:CDS |
| GAATACACCACGTACCAAGA+GGG | 0.698160 | tig0039907:-7816 | None:intergenic |
| ATAACTGAAGAACTTAGACA+CGG | 0.701868 | tig0039907:+3975 | Msa1458900:CDS |
| AACTGAAGAACTTAGACACG+GGG | 0.713202 | tig0039907:+3977 | Msa1458900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTAATTTAAATTAATA+GGG | - | tig0039907:6431-6450 | None:intergenic | 0.0% |
| !! | AATAATTAATTTAAATTAAT+AGG | - | tig0039907:6432-6451 | None:intergenic | 0.0% |
| !! | AAATCAAATAAATAAAACTA+AGG | + | tig0039907:972-991 | Msa1458900:intron | 10.0% |
| !! | AATCAAATAAATAAAACTAA+GGG | + | tig0039907:973-992 | Msa1458900:intron | 10.0% |
| !!! | ATATTATTCACAAATATTTT+TGG | + | tig0039907:1046-1065 | Msa1458900:intron | 10.0% |
| !!! | TAATGTTTTGAAAATTTATT+TGG | + | tig0039907:1088-1107 | Msa1458900:intron | 10.0% |
| !! | AAAAATAATAATTTATTGCA+TGG | + | tig0039907:1911-1930 | Msa1458900:CDS | 10.0% |
| !!! | ACTTATCTAATTTTAATAAA+AGG | - | tig0039907:5479-5498 | None:intergenic | 10.0% |
| !! | TATATTATAAAAGGTAAAAT+TGG | - | tig0039907:5687-5706 | None:intergenic | 10.0% |
| !!! | GCAATTTTATTTTTTTTTAT+GGG | - | tig0039907:6504-6523 | None:intergenic | 10.0% |
| !!! | AATATATAAAATTTTACAAC+GGG | - | tig0039907:6644-6663 | None:intergenic | 10.0% |
| !!! | GAATATATAAAATTTTACAA+CGG | - | tig0039907:6645-6664 | None:intergenic | 10.0% |
| !!! | GTAAAAATATTGTTTTTATT+AGG | - | tig0039907:7247-7266 | None:intergenic | 10.0% |
| !!! | TTTATGCTTATTTTCTATTT+AGG | + | tig0039907:162-181 | Msa1458900:intron | 15.0% |
| !!! | AAAACAAGATTTTTTAGATA+CGG | + | tig0039907:385-404 | Msa1458900:intron | 15.0% |
| !! | ATATAGAAAAGTGAAAATAA+GGG | + | tig0039907:630-649 | Msa1458900:intron | 15.0% |
| !!! | TGTTTAAAATCATCTTATAT+TGG | + | tig0039907:691-710 | Msa1458900:intron | 15.0% |
| !!! | GTTTAAAATCATCTTATATT+GGG | + | tig0039907:692-711 | Msa1458900:intron | 15.0% |
| !!! | CTGATTTAAAACATTTTTTA+GGG | + | tig0039907:1628-1647 | Msa1458900:intron | 15.0% |
| !! | TTAATCAATATGGTAAATAA+GGG | - | tig0039907:2394-2413 | None:intergenic | 15.0% |
| !! | ATTAATCAATATGGTAAATA+AGG | - | tig0039907:2395-2414 | None:intergenic | 15.0% |
| !!! | TTATTTACCATATTGATTAA+TGG | + | tig0039907:2394-2413 | Msa1458900:intron | 15.0% |
| !! | AAAATTAAAACAGAGTAATT+TGG | + | tig0039907:2451-2470 | Msa1458900:intron | 15.0% |
| !! | TTAATAATATTTCAAAGCTT+AGG | + | tig0039907:4549-4568 | Msa1458900:intron | 15.0% |
| !! | ATACATTAGAAGTAAATAAA+TGG | + | tig0039907:4637-4656 | Msa1458900:intron | 15.0% |
| !!! | TTTGTTTTAATTGAAATGTA+CGG | - | tig0039907:4995-5014 | None:intergenic | 15.0% |
| !! | TCATAAATACATTTATCATT+TGG | + | tig0039907:5906-5925 | Msa1458900:intron | 15.0% |
| !! | CATAAATACATTTATCATTT+GGG | + | tig0039907:5907-5926 | Msa1458900:intron | 15.0% |
| !! | TAAATATAAAATGACGTAAA+AGG | - | tig0039907:6023-6042 | None:intergenic | 15.0% |
| !! | TAAATTAATAGGGTTAAAAT+TGG | - | tig0039907:6421-6440 | None:intergenic | 15.0% |
| !!! | GGCAATTTTATTTTTTTTTA+TGG | - | tig0039907:6505-6524 | None:intergenic | 15.0% |
| !! | CTTATTAAAAATAATGTGTT+TGG | - | tig0039907:6911-6930 | None:intergenic | 15.0% |
| !!! | ATTTTGATGAATTTTAATAG+AGG | - | tig0039907:7524-7543 | None:intergenic | 15.0% |
| !!! | TATGTCAAATTTTCAATTTT+AGG | + | tig0039907:7591-7610 | Msa1458900:intron | 15.0% |
| !! | AATAAGCATAAATTAATGAG+CGG | - | tig0039907:154-173 | None:intergenic | 20.0% |
| !!! | AAACAAGATTTTTTAGATAC+GGG | + | tig0039907:386-405 | Msa1458900:intron | 20.0% |
| !! | ATAGATTTAAACGATTCTAA+GGG | - | tig0039907:573-592 | None:intergenic | 20.0% |
| !! | GATATAGAAAAGTGAAAATA+AGG | + | tig0039907:629-648 | Msa1458900:intron | 20.0% |
| !! | AGATGATACTCTTTATTAAA+AGG | - | tig0039907:792-811 | None:intergenic | 20.0% |
| !!! | TTTGAAATGATTAATATTCC+TGG | - | tig0039907:955-974 | None:intergenic | 20.0% |
| !!! | CTTTTATCGAAATGTTAAAA+GGG | - | tig0039907:1216-1235 | None:intergenic | 20.0% |
| !! | ATCAAAAAAAAAAAAAGACC+TGG | - | tig0039907:1430-1449 | None:intergenic | 20.0% |
| !!! | CCTAAAAAATGTTTTAAATC+AGG | - | tig0039907:1630-1649 | None:intergenic | 20.0% |
| !!! | CCTGATTTAAAACATTTTTT+AGG | + | tig0039907:1627-1646 | Msa1458900:intron | 20.0% |
| !! | TATTCAAATATCACATTTCA+TGG | + | tig0039907:1780-1799 | Msa1458900:intron | 20.0% |
| !! | TATTCATCCATTAATCAATA+TGG | - | tig0039907:2404-2423 | None:intergenic | 20.0% |
| !!! | AGATCATATTTTATGTTTCA+TGG | + | tig0039907:2563-2582 | Msa1458900:intron | 20.0% |
| !!! | ATATTTTATGTTTCATGGAT+TGG | + | tig0039907:2568-2587 | Msa1458900:intron | 20.0% |
| !!! | TATTTAGTGCATCTTTAAAA+AGG | - | tig0039907:2808-2827 | None:intergenic | 20.0% |
| !! | TAATCATTAGATTTCAAACA+AGG | - | tig0039907:4132-4151 | None:intergenic | 20.0% |
| !! | ATAATAGGCTAAAAAAATGA+CGG | + | tig0039907:4266-4285 | Msa1458900:intron | 20.0% |
| !! | TTAGCTAAATATATTTCATG+AGG | + | tig0039907:4325-4344 | Msa1458900:intron | 20.0% |
| !!! | GTATTCTTTGACTTAAAAAA+GGG | - | tig0039907:4621-4640 | None:intergenic | 20.0% |
| !!! | TGTATTCTTTGACTTAAAAA+AGG | - | tig0039907:4622-4641 | None:intergenic | 20.0% |
| !! | TATATTTATTATCGTCAGTT+TGG | - | tig0039907:4753-4772 | None:intergenic | 20.0% |
| !! | AACTATAAACTTTCTTGTAT+TGG | - | tig0039907:4812-4831 | None:intergenic | 20.0% |
| !! | ACAACTACATATAAAAAAGT+AGG | - | tig0039907:4930-4949 | None:intergenic | 20.0% |
| !!! | TTGTTTTAATTGAAATGTAC+GGG | - | tig0039907:4994-5013 | None:intergenic | 20.0% |
| !! | TTTCATTCAACATAATTGTT+TGG | + | tig0039907:5114-5133 | Msa1458900:intron | 20.0% |
| !!! | TTGAGTTTTTTTTTAAACGT+GGG | - | tig0039907:5747-5766 | None:intergenic | 20.0% |
| !!! | ATTGAGTTTTTTTTTAAACG+TGG | - | tig0039907:5748-5767 | None:intergenic | 20.0% |
| !! | AAAGAACTCTTACTATATTA+GGG | + | tig0039907:6219-6238 | Msa1458900:intron | 20.0% |
| !!! | TTTATTATTTGGTGTACAAT+AGG | - | tig0039907:6614-6633 | None:intergenic | 20.0% |
| !! | TACACCAAATAATAAATAAC+TGG | + | tig0039907:6618-6637 | Msa1458900:intron | 20.0% |
| !! | CTATGAATTTCAAAAATAAG+AGG | - | tig0039907:6692-6711 | None:intergenic | 20.0% |
| !!! | GCAATAAATATTCAAACTTT+TGG | - | tig0039907:6789-6808 | None:intergenic | 20.0% |
| !!! | GGTAAAATTAATTTTTGAAG+TGG | - | tig0039907:6890-6909 | None:intergenic | 20.0% |
| ! | CATAGATTTAAACGATTCTA+AGG | - | tig0039907:574-593 | None:intergenic | 25.0% |
| !!! | TCTATGTTTTGATGTTGAAA+TGG | + | tig0039907:588-607 | Msa1458900:intron | 25.0% |
| !!! | CTATGTTTTGATGTTGAAAT+GGG | + | tig0039907:589-608 | Msa1458900:intron | 25.0% |
| ! | TACTCTTTATTAAAAGGAGA+AGG | - | tig0039907:786-805 | None:intergenic | 25.0% |
| !! | TCTGATAGAAAGGTTTTTAT+AGG | - | tig0039907:897-916 | None:intergenic | 25.0% |
| ! | ATAAAAACCTTTCTATCAGA+AGG | + | tig0039907:897-916 | Msa1458900:intron | 25.0% |
| ! | CAAATAAATAAAACTAAGGG+AGG | + | tig0039907:976-995 | Msa1458900:intron | 25.0% |
| ! | TGGAAATTGGAAGTTATAAA+TGG | + | tig0039907:1143-1162 | Msa1458900:intron | 25.0% |
| !! | CCTTTTATCGAAATGTTAAA+AGG | - | tig0039907:1217-1236 | None:intergenic | 25.0% |
| !! | CCTTTTAACATTTCGATAAA+AGG | + | tig0039907:1214-1233 | Msa1458900:intron | 25.0% |
| ! | TTTAACATTTCGATAAAAGG+TGG | + | tig0039907:1217-1236 | Msa1458900:intron | 25.0% |
| ! | TTAACATTTCGATAAAAGGT+GGG | + | tig0039907:1218-1237 | Msa1458900:intron | 25.0% |
| !!! | GAGTATTGATAATATGTTCA+TGG | + | tig0039907:1703-1722 | Msa1458900:intron | 25.0% |
| !! | TATTGATAATATGTTCATGG+TGG | + | tig0039907:1706-1725 | Msa1458900:intron | 25.0% |
| !! | ATTGATAATATGTTCATGGT+GGG | + | tig0039907:1707-1726 | Msa1458900:intron | 25.0% |
| !!! | TTTGATTTTTCACTTTCCTT+AGG | + | tig0039907:1839-1858 | Msa1458900:intron | 25.0% |
| ! | TATACTTACAAAATCCTCAA+GGG | - | tig0039907:1993-2012 | None:intergenic | 25.0% |
| ! | ATATACTTACAAAATCCTCA+AGG | - | tig0039907:1994-2013 | None:intergenic | 25.0% |
| ! | CATATCAAAGAAAATACTCT+TGG | - | tig0039907:2020-2039 | None:intergenic | 25.0% |
| !! | TTTGCAAGTAAATTTTGTTG+GGG | - | tig0039907:2173-2192 | None:intergenic | 25.0% |
| !! | GTTTGCAAGTAAATTTTGTT+GGG | - | tig0039907:2174-2193 | None:intergenic | 25.0% |
| !! | AGTTTGCAAGTAAATTTTGT+TGG | - | tig0039907:2175-2194 | None:intergenic | 25.0% |
| ! | AAAGATTAAAGAAAGCAATG+TGG | + | tig0039907:2312-2331 | Msa1458900:intron | 25.0% |
| ! | ATACCGATCAAGTTTATTTA+CGG | - | tig0039907:2350-2369 | None:intergenic | 25.0% |
| ! | AGAAAAGTAATGATGATAAC+CGG | + | tig0039907:2924-2943 | Msa1458900:intron | 25.0% |
| ! | TTGTTGACACAAATAATTTG+TGG | - | tig0039907:3146-3165 | None:intergenic | 25.0% |
| ! | TTGTTGACACAAATAATTTG+TGG | - | tig0039907:3146-3165 | None:intergenic | 25.0% |
| !! | TACAAATTTTCAGCAGAAAT+AGG | - | tig0039907:3618-3637 | None:intergenic | 25.0% |
| !!! | TTGTGACTATTTTTGAACAA+AGG | + | tig0039907:3842-3861 | Msa1458900:CDS | 25.0% |
| !!! | TGTGACTATTTTTGAACAAA+GGG | + | tig0039907:3843-3862 | Msa1458900:CDS | 25.0% |
| ! | ATTTATTACCATACCTTTCT+TGG | + | tig0039907:3894-3913 | Msa1458900:intron | 25.0% |
| ! | TTTATTACCATACCTTTCTT+GGG | + | tig0039907:3895-3914 | Msa1458900:intron | 25.0% |
| ! | TCAACAAGTAAAAAGAACAA+AGG | - | tig0039907:3948-3967 | None:intergenic | 25.0% |
| ! | TAATTCTATTCTTCTGAATC+TGG | + | tig0039907:4349-4368 | Msa1458900:intron | 25.0% |
| !!! | GTACTATTTTTTGTTTCAGA+TGG | + | tig0039907:4448-4467 | Msa1458900:intron | 25.0% |
| ! | CATAATTGCTGATGAATTTA+CGG | - | tig0039907:4579-4598 | None:intergenic | 25.0% |
| !! | ACCATGCTAATTTTTATTAG+TGG | + | tig0039907:5438-5457 | Msa1458900:intron | 25.0% |
| !! | CCATGCTAATTTTTATTAGT+GGG | + | tig0039907:5439-5458 | Msa1458900:intron | 25.0% |
| !! | CATGCTAATTTTTATTAGTG+GGG | + | tig0039907:5440-5459 | Msa1458900:intron | 25.0% |
| ! | CAAAGAACTCTTACTATATT+AGG | + | tig0039907:6218-6237 | Msa1458900:intron | 25.0% |
| !!! | TTTTTTTTATGGGAAAAACG+TGG | - | tig0039907:6494-6513 | None:intergenic | 25.0% |
| !!! | TTGCCACTCTTTTTTTTTTA+AGG | + | tig0039907:6520-6539 | Msa1458900:intron | 25.0% |
| ! | GTTCCTTAAAAAAAAAAGAG+TGG | - | tig0039907:6526-6545 | None:intergenic | 25.0% |
| ! | GAATTTCAAAAATAAGAGGA+AGG | - | tig0039907:6688-6707 | None:intergenic | 25.0% |
| !! | TTATCGGTTAAATTTCTTTG+AGG | + | tig0039907:6727-6746 | Msa1458900:intron | 25.0% |
| !! | AAAGTCGAAGGAAATTTTTA+TGG | + | tig0039907:6754-6773 | Msa1458900:intron | 25.0% |
| ! | AGATGAAAGCTGAAAAATAT+CGG | - | tig0039907:7196-7215 | None:intergenic | 25.0% |
| ! | TATTGGATTGTTGAACTAAA+AGG | + | tig0039907:7221-7240 | Msa1458900:intron | 25.0% |
| ! | AGATTCAATATGTACATGAT+GGG | - | tig0039907:7356-7375 | None:intergenic | 25.0% |
| ! | AAGATTCAATATGTACATGA+TGG | - | tig0039907:7357-7376 | None:intergenic | 25.0% |
| ! | AATAACACTATTCTTCTTAG+AGG | + | tig0039907:7379-7398 | Msa1458900:intron | 25.0% |
| !! | GTAAATTTTCTTTCTTTCTC+AGG | - | tig0039907:7426-7445 | None:intergenic | 25.0% |
| ! | ATATTACTTATTTGCCTACA+TGG | + | tig0039907:7482-7501 | Msa1458900:intron | 25.0% |
| !!! | TAATTTGTTAGATTCAGTCA+AGG | + | tig0039907:7723-7742 | Msa1458900:intron | 25.0% |
| ! | ATCAAATATTAACTGTGCAA+TGG | + | tig0039907:8005-8024 | Msa1458900:three_prime_UTR | 25.0% |
| ! | TTTCACTTTCATTATTTCAC+TGG | - | tig0039907:8031-8050 | None:intergenic | 25.0% |
| ! | AATCATAATTGGATCAGAAA+CGG | - | tig0039907:8054-8073 | None:intergenic | 25.0% |
| ! | CAAATTCAGAAATGTGTATT+TGG | + | tig0039907:8121-8140 | Msa1458900:three_prime_UTR | 25.0% |
| GACTTATTTGAACTTATCTC+TGG | - | tig0039907:538-557 | None:intergenic | 30.0% | |
| ! | TTTTGATGTTGAAATGGGAT+AGG | + | tig0039907:594-613 | Msa1458900:intron | 30.0% |
| AGAAAAGTGAAAATAAGGGA+AGG | + | tig0039907:634-653 | Msa1458900:intron | 30.0% | |
| GAAAAGTGAAAATAAGGGAA+GGG | + | tig0039907:635-654 | Msa1458900:intron | 30.0% | |
| ATCTTATATTGGGACAACTT+TGG | + | tig0039907:702-721 | Msa1458900:intron | 30.0% | |
| !! | AAATGTACCAAGAGTTTTGA+AGG | + | tig0039907:735-754 | Msa1458900:intron | 30.0% |
| TGATTAATATTCCTGGTAAG+TGG | - | tig0039907:948-967 | None:intergenic | 30.0% | |
| GTTAAAAAACAGAGAACATG+TGG | + | tig0039907:1110-1129 | Msa1458900:intron | 30.0% | |
| TTATCGAAATGTTAAAAGGG+TGG | - | tig0039907:1213-1232 | None:intergenic | 30.0% | |
| TAACATTTCGATAAAAGGTG+GGG | + | tig0039907:1219-1238 | Msa1458900:intron | 30.0% | |
| !! | CAAGCTCTAAAAATATTCCT+AGG | - | tig0039907:1268-1287 | None:intergenic | 30.0% |
| ATAGTTACATCTACTTGTCT+AGG | - | tig0039907:1395-1414 | None:intergenic | 30.0% | |
| AGACAAGTAGATGTAACTAT+TGG | + | tig0039907:1395-1414 | Msa1458900:intron | 30.0% | |
| AACAAATTTGTAACTGTGTG+TGG | + | tig0039907:1515-1534 | Msa1458900:intron | 30.0% | |
| AAATATGAAATACCAACACC+TGG | + | tig0039907:1586-1605 | Msa1458900:intron | 30.0% | |
| TGAAGAGAAATACTGTTCTA+AGG | + | tig0039907:1678-1697 | Msa1458900:intron | 30.0% | |
| ! | TTGATAATATGTTCATGGTG+GGG | + | tig0039907:1708-1727 | Msa1458900:intron | 30.0% |
| ! | AAGATTTTGTTCGAAACCTA+AGG | - | tig0039907:1858-1877 | None:intergenic | 30.0% |
| AATGAAAACATAGCCATGAT+CGG | + | tig0039907:1938-1957 | Msa1458900:CDS | 30.0% | |
| ! | TCATCACTTGGTGATTAATT+GGG | + | tig0039907:2063-2082 | Msa1458900:intron | 30.0% |
| GTTGTGATAGACATACTATT+GGG | - | tig0039907:2266-2285 | None:intergenic | 30.0% | |
| TGTTGTGATAGACATACTAT+TGG | - | tig0039907:2267-2286 | None:intergenic | 30.0% | |
| TATGTCTATCACAACAACTA+TGG | + | tig0039907:2271-2290 | Msa1458900:intron | 30.0% | |
| AACCCGTAAATAAACTTGAT+CGG | + | tig0039907:2344-2363 | Msa1458900:intron | 30.0% | |
| TACCGATCAAGTTTATTTAC+GGG | - | tig0039907:2349-2368 | None:intergenic | 30.0% | |
| AAACAGAGTAATTTGGTAGA+AGG | + | tig0039907:2458-2477 | Msa1458900:intron | 30.0% | |
| AAAAAAGCTCACATCAACAT+TGG | - | tig0039907:2536-2555 | None:intergenic | 30.0% | |
| AAGAATTTGAAGATCGATTG+TGG | - | tig0039907:2605-2624 | None:intergenic | 30.0% | |
| TAAATATGACATCGCTTACA+AGG | + | tig0039907:2822-2841 | Msa1458900:intron | 30.0% | |
| !!! | TGTTTTAGCAATTGAGATGA+TGG | + | tig0039907:2853-2872 | Msa1458900:intron | 30.0% |
| ATAGTCGTATAAGCTTATAC+CGG | - | tig0039907:2946-2965 | None:intergenic | 30.0% | |
| ! | GACTATTTGTTTCTTAAGCT+TGG | + | tig0039907:2960-2979 | Msa1458900:intron | 30.0% |
| !!! | GATGACAATTCGTGTTATTT+TGG | - | tig0039907:3013-3032 | None:intergenic | 30.0% |
| ! | AATAATTTGTGGCTAAAGTG+AGG | - | tig0039907:3135-3154 | None:intergenic | 30.0% |
| ! | AATAATTTGTGGCTAAAGTG+AGG | - | tig0039907:3135-3154 | None:intergenic | 30.0% |
| GAAATTTGATTGCTTTCAGT+GGG | - | tig0039907:3336-3355 | None:intergenic | 30.0% | |
| AGAAATTTGATTGCTTTCAG+TGG | - | tig0039907:3337-3356 | None:intergenic | 30.0% | |
| CTTGACTCAATGATACATTT+AGG | + | tig0039907:3454-3473 | Msa1458900:intron | 30.0% | |
| ATACATTTAGGTGATAGATG+AGG | + | tig0039907:3466-3485 | Msa1458900:intron | 30.0% | |
| TACATTTAGGTGATAGATGA+GGG | + | tig0039907:3467-3486 | Msa1458900:intron | 30.0% | |
| ! | ATGCTTTTAAGCCGAAAAAA+TGG | - | tig0039907:3502-3521 | None:intergenic | 30.0% |
| ! | AGTACATTTGTTGAACTCTA+GGG | - | tig0039907:3565-3584 | None:intergenic | 30.0% |
| ! | AAGTACATTTGTTGAACTCT+AGG | - | tig0039907:3566-3585 | None:intergenic | 30.0% |
| GTGATTGATCACATTTAAAG+TGG | + | tig0039907:3704-3723 | Msa1458900:intron | 30.0% | |
| GTAGAAAGCAACACAAAATT+TGG | + | tig0039907:3786-3805 | Msa1458900:intron | 30.0% | |
| TGTTCAAAAATAGTCACAAG+TGG | - | tig0039907:3841-3860 | None:intergenic | 30.0% | |
| !!! | GTGACTATTTTTGAACAAAG+GGG | + | tig0039907:3844-3863 | Msa1458900:CDS | 30.0% |
| !! | TCTTTTTACTTGTTGAGCTA+AGG | + | tig0039907:3952-3971 | Msa1458900:intron | 30.0% |
| ATAACTGAAGAACTTAGACA+CGG | + | tig0039907:3975-3994 | Msa1458900:CDS | 30.0% | |
| !! | TCTTATTGATGATGTGATGA+AGG | + | tig0039907:4167-4186 | Msa1458900:CDS | 30.0% |
| TCTTTCAATTTCAGAGTTCT+TGG | + | tig0039907:4402-4421 | Msa1458900:CDS | 30.0% | |
| AATTTGTGCATGAGATATCA+TGG | - | tig0039907:4483-4502 | None:intergenic | 30.0% | |
| ! | AATTCACATGGGTAGAATTT+TGG | + | tig0039907:4499-4518 | Msa1458900:intron | 30.0% |
| AACTTTCTTGTATTGGATGT+TGG | - | tig0039907:4805-4824 | None:intergenic | 30.0% | |
| AAGTTTATAGTTGAGCGATA+AGG | + | tig0039907:4820-4839 | Msa1458900:intron | 30.0% | |
| ATTCTAATAAACTTTCCTGG+GGG | - | tig0039907:4907-4926 | None:intergenic | 30.0% | |
| GATTCTAATAAACTTTCCTG+GGG | - | tig0039907:4908-4927 | None:intergenic | 30.0% | |
| GGATTCTAATAAACTTTCCT+GGG | - | tig0039907:4909-4928 | None:intergenic | 30.0% | |
| AGGATTCTAATAAACTTTCC+TGG | - | tig0039907:4910-4929 | None:intergenic | 30.0% | |
| ACAGAAGAAAGAAATGATGT+CGG | - | tig0039907:4953-4972 | None:intergenic | 30.0% | |
| ! | TTTGGTTGTGAAAATTTTGC+AGG | + | tig0039907:5132-5151 | Msa1458900:intron | 30.0% |
| CGCATGTTTATCAGAATATA+TGG | + | tig0039907:5275-5294 | Msa1458900:CDS | 30.0% | |
| TTTGACATACCAACATAGAA+GGG | - | tig0039907:5313-5332 | None:intergenic | 30.0% | |
| !! | AAGGGTATCTAATTTACATG+TGG | + | tig0039907:5341-5360 | Msa1458900:intron | 30.0% |
| ! | AGGGTATCTAATTTACATGT+GGG | + | tig0039907:5342-5361 | Msa1458900:intron | 30.0% |
| CCCACTAATAAAAATTAGCA+TGG | - | tig0039907:5442-5461 | None:intergenic | 30.0% | |
| TGATAGCAATACAGTCTTTA+AGG | + | tig0039907:5504-5523 | Msa1458900:intron | 30.0% | |
| TGTAAAATTAGCTGTTCAAG+TGG | - | tig0039907:6050-6069 | None:intergenic | 30.0% | |
| CAGTTATAAACATGAACATG+GGG | - | tig0039907:6471-6490 | None:intergenic | 30.0% | |
| GCAGTTATAAACATGAACAT+GGG | - | tig0039907:6472-6491 | None:intergenic | 30.0% | |
| TTTCAAAAATAAGAGGAAGG+TGG | - | tig0039907:6685-6704 | None:intergenic | 30.0% | |
| ! | TTTGAAATTCATAGAAGCAG+AGG | + | tig0039907:6698-6717 | Msa1458900:intron | 30.0% |
| CAGCTTTCATCTATTCTTAT+TGG | + | tig0039907:7204-7223 | Msa1458900:intron | 30.0% | |
| ! | TTTTCTTTCTTTCTCAGGAT+AGG | - | tig0039907:7421-7440 | None:intergenic | 30.0% |
| TAAAACAAAGTGATCCATGT+AGG | - | tig0039907:7499-7518 | None:intergenic | 30.0% | |
| TAACAAATTACCTTCTTCAG+TGG | - | tig0039907:7713-7732 | None:intergenic | 30.0% | |
| GTTTCTGATCCAATTATGAT+TGG | + | tig0039907:8053-8072 | Msa1458900:three_prime_UTR | 30.0% | |
| AAGTCTTGACCAATCATAAT+TGG | - | tig0039907:8065-8084 | None:intergenic | 30.0% | |
| !! | GAATATTGTTTTTCTTCTGC+TGG | + | tig0039907:8143-8162 | Msa1458900:three_prime_UTR | 30.0% |
| TTATGCCAAATTCCCACAAA+TGG | + | tig0039907:205-224 | Msa1458900:intron | 35.0% | |
| TCATTCCATTTGTGGGAATT+TGG | - | tig0039907:213-232 | None:intergenic | 35.0% | |
| GTAAACAACAATGTCGAATC+AGG | - | tig0039907:263-282 | None:intergenic | 35.0% | |
| !! | CATTGTTGTTTACTCTGATC+TGG | + | tig0039907:270-289 | Msa1458900:intron | 35.0% |
| GTCTAAGTTCCTATGATTTC+CGG | + | tig0039907:326-345 | Msa1458900:intron | 35.0% | |
| ! | ATTTAAACGATTCTAAGGGC+AGG | - | tig0039907:569-588 | None:intergenic | 35.0% |
| ATACGATCCTTCAAAACTCT+TGG | - | tig0039907:745-764 | None:intergenic | 35.0% | |
| AAAGGAGAAGGAGAAAATGA+GGG | - | tig0039907:774-793 | None:intergenic | 35.0% | |
| AAAAGGAGAAGGAGAAAATG+AGG | - | tig0039907:775-794 | None:intergenic | 35.0% | |
| AGTAAGTTGTGTTAGTAGTC+AGG | - | tig0039907:852-871 | None:intergenic | 35.0% | |
| AAAACCTTTCTATCAGAAGG+AGG | + | tig0039907:900-919 | Msa1458900:intron | 35.0% | |
| ATCCATAGGTTCTTATTCTC+AGG | + | tig0039907:1007-1026 | Msa1458900:intron | 35.0% | |
| TTCCTGAGAATAAGAACCTA+TGG | - | tig0039907:1012-1031 | None:intergenic | 35.0% | |
| !! | GCTCTAAAAATATTCCTAGG+TGG | - | tig0039907:1265-1284 | None:intergenic | 35.0% |
| ! | TTGTCTAGGATATTGTGGAA+TGG | - | tig0039907:1381-1400 | None:intergenic | 35.0% |
| ! | TCTACTTGTCTAGGATATTG+TGG | - | tig0039907:1386-1405 | None:intergenic | 35.0% |
| CAAGTAGATGTAACTATTGG+AGG | + | tig0039907:1398-1417 | Msa1458900:intron | 35.0% | |
| !! | AACTATTGGAGGTATTATCC+AGG | + | tig0039907:1409-1428 | Msa1458900:intron | 35.0% |
| AAATTTGTAACTGTGTGTGG+TGG | + | tig0039907:1518-1537 | Msa1458900:intron | 35.0% | |
| AATTTGTAACTGTGTGTGGT+GGG | + | tig0039907:1519-1538 | Msa1458900:intron | 35.0% | |
| AATAACCAATTATGCATGCC+AGG | - | tig0039907:1607-1626 | None:intergenic | 35.0% | |
| !! | AGAGAAATACTGTTCTAAGG+AGG | + | tig0039907:1681-1700 | Msa1458900:intron | 35.0% |
| TGATAATATGTTCATGGTGG+GGG | + | tig0039907:1709-1728 | Msa1458900:intron | 35.0% | |
| ATGATAAAGACAGCAGTGAA+CGG | - | tig0039907:1748-1767 | None:intergenic | 35.0% | |
| GGTTTCGAACAAAATCTTGT+TGG | + | tig0039907:1860-1879 | Msa1458900:intron | 35.0% | |
| ATGAAAACATAGCCATGATC+GGG | + | tig0039907:1939-1958 | Msa1458900:CDS | 35.0% | |
| ! | CTCATCACTTGGTGATTAAT+TGG | + | tig0039907:2062-2081 | Msa1458900:intron | 35.0% |
| !! | CACTGTTACCAACCATTTTT+AGG | - | tig0039907:2135-2154 | None:intergenic | 35.0% |
| !! | CTAAAAATGGTTGGTAACAG+TGG | + | tig0039907:2133-2152 | Msa1458900:intron | 35.0% |
| GTAAATAAGGGAGTTAGACA+GGG | - | tig0039907:2382-2401 | None:intergenic | 35.0% | |
| CTCTCTGTGAATGAAAGAAT+AGG | - | tig0039907:2629-2648 | None:intergenic | 35.0% | |
| CACAGAGAGCTATATTTATC+AGG | + | tig0039907:2640-2659 | Msa1458900:intron | 35.0% | |
| TTATCAGGTACATGCTAGAT+TGG | + | tig0039907:2655-2674 | Msa1458900:intron | 35.0% | |
| !!! | AACCAGTTTTGGGAATGAAA+GGG | - | tig0039907:2699-2718 | None:intergenic | 35.0% |
| ! | CATACAGTAGAACCAGTTTT+GGG | - | tig0039907:2709-2728 | None:intergenic | 35.0% |
| ! | ACATACAGTAGAACCAGTTT+TGG | - | tig0039907:2710-2729 | None:intergenic | 35.0% |
| CAAGGCAAGTTTAAGAAACT+AGG | + | tig0039907:2779-2798 | Msa1458900:intron | 35.0% | |
| !!! | ATTCGTGTTATTTTGGCAGT+TGG | - | tig0039907:3006-3025 | None:intergenic | 35.0% |
| AGCAAACACATATTGGTGAA+GGG | - | tig0039907:3074-3093 | None:intergenic | 35.0% | |
| AGCAAACACATATTGGTGAA+GGG | - | tig0039907:3074-3093 | None:intergenic | 35.0% | |
| ACTCATCTCAGAAAAGTCAA+AGG | + | tig0039907:3287-3306 | Msa1458900:intron | 35.0% | |
| TAGAAATGTGAGTGTCTTGA+TGG | - | tig0039907:3372-3391 | None:intergenic | 35.0% | |
| TGTTTCAGAGTGTGATTACT+TGG | + | tig0039907:3406-3425 | Msa1458900:intron | 35.0% | |
| TCTCACCTCAACAAACTAAA+AGG | - | tig0039907:3432-3451 | None:intergenic | 35.0% | |
| !! | AAGTCAGGTTGAGCTTAATT+TGG | + | tig0039907:3921-3940 | Msa1458900:intron | 35.0% |
| TAACTGAAGAACTTAGACAC+GGG | + | tig0039907:3976-3995 | Msa1458900:CDS | 35.0% | |
| ATGACAGAGCTTTCTTTCAA+GGG | - | tig0039907:4015-4034 | None:intergenic | 35.0% | |
| TCAAACAAGGAACATTGAGA+AGG | - | tig0039907:4119-4138 | None:intergenic | 35.0% | |
| AGCTAAGGTACACGAATAAT+AGG | + | tig0039907:4251-4270 | Msa1458900:intron | 35.0% | |
| ! | TTCTTCTGAATCTGGTTTGA+AGG | + | tig0039907:4357-4376 | Msa1458900:intron | 35.0% |
| TTCAATTTCAGAGTTCTTGG+TGG | + | tig0039907:4405-4424 | Msa1458900:CDS | 35.0% | |
| ATCTCATGCACAAATTCACA+TGG | + | tig0039907:4487-4506 | Msa1458900:intron | 35.0% | |
| TCTCATGCACAAATTCACAT+GGG | + | tig0039907:4488-4507 | Msa1458900:intron | 35.0% | |
| !!! | TTTTGGAGTTGCTTCTATCA+TGG | + | tig0039907:4516-4535 | Msa1458900:intron | 35.0% |
| ! | AAAGCTGTGCTTTCTACTTT+TGG | + | tig0039907:4710-4729 | Msa1458900:intron | 35.0% |
| TTTATAGTTGAGCGATAAGG+TGG | + | tig0039907:4823-4842 | Msa1458900:intron | 35.0% | |
| ! | ATTTTGCAGGTATGACTATG+AGG | + | tig0039907:5145-5164 | Msa1458900:intron | 35.0% |
| TTGACATACCAACATAGAAG+GGG | - | tig0039907:5312-5331 | None:intergenic | 35.0% | |
| GTTTGACATACCAACATAGA+AGG | - | tig0039907:5314-5333 | None:intergenic | 35.0% | |
| TCTATGTTGGTATGTCAAAC+TGG | + | tig0039907:5314-5333 | Msa1458900:CDS | 35.0% | |
| CATGTTCTCTCTAAATCTGT+TGG | + | tig0039907:5371-5390 | Msa1458900:intron | 35.0% | |
| ! | TTGGTTAGCTGGTATATTTC+TGG | + | tig0039907:5390-5409 | Msa1458900:intron | 35.0% |
| !!! | AGTAGCTTTTAGCTTATAGC+TGG | + | tig0039907:5650-5669 | Msa1458900:intron | 35.0% |
| GGGCAATTGAATAAGAATGT+GGG | - | tig0039907:5727-5746 | None:intergenic | 35.0% | |
| TGGGCAATTGAATAAGAATG+TGG | - | tig0039907:5728-5747 | None:intergenic | 35.0% | |
| ! | TTTTTACCAAACACACCCTA+AGG | + | tig0039907:6186-6205 | Msa1458900:intron | 35.0% |
| ! | TCTTTGAAAAGAGAGCCTTA+GGG | - | tig0039907:6204-6223 | None:intergenic | 35.0% |
| ! | TTCTTTGAAAAGAGAGCCTT+AGG | - | tig0039907:6205-6224 | None:intergenic | 35.0% |
| TACTATATTAGGGCTGTGTT+TGG | + | tig0039907:6229-6248 | Msa1458900:intron | 35.0% | |
| ! | AAAGCTAGCTTATAGCTTCT+TGG | + | tig0039907:6261-6280 | Msa1458900:intron | 35.0% |
| !! | GGATTAGCTTATAAGCTTGT+TGG | + | tig0039907:5558-5577 | Msa1458900:intron | 35.0% |
| GGCAGTTATAAACATGAACA+TGG | - | tig0039907:6473-6492 | None:intergenic | 35.0% | |
| CGGGCCAGTTATTTATTATT+TGG | - | tig0039907:6625-6644 | None:intergenic | 35.0% | |
| GAAGCAGAGGTCAAAATTAT+CGG | + | tig0039907:6711-6730 | Msa1458900:intron | 35.0% | |
| ! | CTTTGAGGATTAAAAGTCGA+AGG | + | tig0039907:6742-6761 | Msa1458900:intron | 35.0% |
| TTCGATGAAAAATCTCACAC+CGG | - | tig0039907:7072-7091 | None:intergenic | 35.0% | |
| !! | TCAATATGTACATGATGGGT+GGG | - | tig0039907:7352-7371 | None:intergenic | 35.0% |
| ! | TTCAATATGTACATGATGGG+TGG | - | tig0039907:7353-7372 | None:intergenic | 35.0% |
| AAATACTTGATCTGTGTCAG+AGG | + | tig0039907:7896-7915 | Msa1458900:exon | 35.0% | |
| ! | TGTTTCCATTTCAAGTGTCT+TGG | + | tig0039907:7937-7956 | Msa1458900:three_prime_UTR | 35.0% |
| GTTGCAGAACAAGAGAGTAA+TGG | + | tig0039907:105-124 | Msa1458900:CDS | 40.0% | |
| TTTCTATTTAGGCGCTCTCT+TGG | + | tig0039907:173-192 | Msa1458900:intron | 40.0% | |
| CCACTTCTCATTCCATTTGT+GGG | - | tig0039907:220-239 | None:intergenic | 40.0% | |
| CCACAAATGGAATGAGAAGT+GGG | + | tig0039907:218-237 | Msa1458900:intron | 40.0% | |
| TCAGGTCTCGATCATTTACA+TGG | - | tig0039907:245-264 | None:intergenic | 40.0% | |
| AACCACTTGAGTTACACCTT+GGG | - | tig0039907:820-839 | None:intergenic | 40.0% | |
| GTAACTCAAGTGGTTGAACT+TGG | + | tig0039907:825-844 | Msa1458900:intron | 40.0% | |
| AGTTCCTCCTTCTGATAGAA+AGG | - | tig0039907:907-926 | None:intergenic | 40.0% | |
| TGATGTAATCACCACTTACC+AGG | + | tig0039907:934-953 | Msa1458900:intron | 40.0% | |
| AGAGAACATGTGGTAGAATG+AGG | + | tig0039907:1120-1139 | Msa1458900:intron | 40.0% | |
| TGGTAGAATGAGGTGGAAAT+TGG | + | tig0039907:1130-1149 | Msa1458900:intron | 40.0% | |
| GATAAAAGGTGGGGAAACAT+GGG | + | tig0039907:1228-1247 | Msa1458900:intron | 40.0% | |
| GGGTAAAATACAATCCACCT+AGG | + | tig0039907:1248-1267 | Msa1458900:intron | 40.0% | |
| ! | ATATTGTGGAATGGTGGAGA+GGG | - | tig0039907:1372-1391 | None:intergenic | 40.0% |
| ! | TCTAGGATATTGTGGAATGG+TGG | - | tig0039907:1378-1397 | None:intergenic | 40.0% |
| ! | CTTTTCAGTTCCAGGAAGTT+GGG | - | tig0039907:1484-1503 | None:intergenic | 40.0% |
| ! | TCTTTTCAGTTCCAGGAAGT+TGG | - | tig0039907:1485-1504 | None:intergenic | 40.0% |
| ! | CCTACTATCTTTTCAGTTCC+AGG | - | tig0039907:1492-1511 | None:intergenic | 40.0% |
| CCTGGAACTGAAAAGATAGT+AGG | + | tig0039907:1489-1508 | Msa1458900:intron | 40.0% | |
| ATTTGTAACTGTGTGTGGTG+GGG | + | tig0039907:1520-1539 | Msa1458900:intron | 40.0% | |
| ! | GGTAGAATTTGCCTTTTGCA+TGG | - | tig0039907:1972-1991 | None:intergenic | 40.0% |
| AAAGGCAAATTCTACCCTTG+AGG | + | tig0039907:1976-1995 | Msa1458900:CDS | 40.0% | |
| CTGCTACAATACTCATCACT+TGG | + | tig0039907:2051-2070 | Msa1458900:intron | 40.0% | |
| AGTCTGTGACAGCCTAAAAA+TGG | + | tig0039907:2120-2139 | Msa1458900:intron | 40.0% | |
| TGTGACAGCCTAAAAATGGT+TGG | + | tig0039907:2124-2143 | Msa1458900:intron | 40.0% | |
| ACCTACAGTTATCTTTCTCG+AGG | + | tig0039907:2207-2226 | Msa1458900:intron | 40.0% | |
| TCCTCGAGAAAGATAACTGT+AGG | - | tig0039907:2211-2230 | None:intergenic | 40.0% | |
| TACAGTTATCTTTCTCGAGG+AGG | + | tig0039907:2210-2229 | Msa1458900:intron | 40.0% | |
| ACAGTTATCTTTCTCGAGGA+GGG | + | tig0039907:2211-2230 | Msa1458900:intron | 40.0% | |
| ACATACTATTGGGTCGAAGA+CGG | - | tig0039907:2256-2275 | None:intergenic | 40.0% | |
| GTCTATCACAACAACTATGG+TGG | + | tig0039907:2274-2293 | Msa1458900:intron | 40.0% | |
| GGTAAATAAGGGAGTTAGAC+AGG | - | tig0039907:2383-2402 | None:intergenic | 40.0% | |
| TCTGTAGAAAGAAGCAAGCA+AGG | - | tig0039907:2432-2451 | None:intergenic | 40.0% | |
| CAACATTGGAATCACAAAGC+AGG | - | tig0039907:2522-2541 | None:intergenic | 40.0% | |
| !!! | GAACCAGTTTTGGGAATGAA+AGG | - | tig0039907:2700-2719 | None:intergenic | 40.0% |
| CTACTGTATGTGTGTCTAGA+AGG | + | tig0039907:2719-2738 | Msa1458900:intron | 40.0% | |
| TGTACCTCAAGCTAGATTGA+AGG | + | tig0039907:2756-2775 | Msa1458900:intron | 40.0% | |
| CATTGCGCAAAAACTGTTCA+GGG | - | tig0039907:3035-3054 | None:intergenic | 40.0% | |
| ACATTGCGCAAAAACTGTTC+AGG | - | tig0039907:3036-3055 | None:intergenic | 40.0% | |
| CAGCAAACACATATTGGTGA+AGG | - | tig0039907:3075-3094 | None:intergenic | 40.0% | |
| CTTCACCAATATGTGTTTGC+TGG | + | tig0039907:3073-3092 | Msa1458900:intron | 40.0% | |
| AAGCACCAGCAAACACATAT+TGG | - | tig0039907:3081-3100 | None:intergenic | 40.0% | |
| CAGCAAACACATATTGGTGA+AGG | - | tig0039907:3075-3094 | None:intergenic | 40.0% | |
| CTTCACCAATATGTGTTTGC+TGG | + | tig0039907:3073-3092 | Msa1458900:intron | 40.0% | |
| AAGCACCAGCAAACACATAT+TGG | - | tig0039907:3081-3100 | None:intergenic | 40.0% | |
| ATTTGTGGCTAAAGTGAGGT+CGG | - | tig0039907:3131-3150 | None:intergenic | 40.0% | |
| TTGCTTTCAGTGGGAAATGT+GGG | - | tig0039907:3327-3346 | None:intergenic | 40.0% | |
| ATTGCTTTCAGTGGGAAATG+TGG | - | tig0039907:3328-3347 | None:intergenic | 40.0% | |
| !!! | CTTGGCCTTTTAGTTTGTTG+AGG | + | tig0039907:3424-3443 | Msa1458900:intron | 40.0% |
| ATTTAGGTGATAGATGAGGG+TGG | + | tig0039907:3470-3489 | Msa1458900:intron | 40.0% | |
| TGTAGCTGTTATCATGCAGT+TGG | + | tig0039907:3634-3653 | Msa1458900:intron | 40.0% | |
| ! | ATTTGCTGCAAACACCAACA+AGG | + | tig0039907:3672-3691 | Msa1458900:CDS | 40.0% |
| AACACCAACAAGGAAAGATG+AGG | + | tig0039907:3682-3701 | Msa1458900:CDS | 40.0% | |
| ATCACCTCATCTTTCCTTGT+TGG | - | tig0039907:3689-3708 | None:intergenic | 40.0% | |
| TAGTCACAAGTGGTCCAAAT+GGG | - | tig0039907:3831-3850 | None:intergenic | 40.0% | |
| ATAGTCACAAGTGGTCCAAA+TGG | - | tig0039907:3832-3851 | None:intergenic | 40.0% | |
| !! | AAAGGGGTCTTTTGACTGAA+AGG | + | tig0039907:3860-3879 | Msa1458900:CDS | 40.0% |
| ACTTACTCCCAAGAAAGGTA+TGG | - | tig0039907:3905-3924 | None:intergenic | 40.0% | |
| AACTGAAGAACTTAGACACG+GGG | + | tig0039907:3977-3996 | Msa1458900:CDS | 40.0% | |
| CATGACAGAGCTTTCTTTCA+AGG | - | tig0039907:4016-4035 | None:intergenic | 40.0% | |
| ! | TGCACTGATAAACGAAGAAG+AGG | + | tig0039907:4034-4053 | Msa1458900:CDS | 40.0% |
| CTTCTTCTCTATCAACTGCA+AGG | + | tig0039907:4228-4247 | Msa1458900:CDS | 40.0% | |
| AAACTCCATATGCAACTCCT+CGG | - | tig0039907:4383-4402 | None:intergenic | 40.0% | |
| !! | TCAGACAACATTTTGACAGC+TGG | - | tig0039907:5193-5212 | None:intergenic | 40.0% |
| TTGACTAAAAGCTGTTCTGC+AGG | + | tig0039907:5221-5240 | Msa1458900:intron | 40.0% | |
| GTATGTCAAACTGGCTACAA+GGG | + | tig0039907:5323-5342 | Msa1458900:CDS | 40.0% | |
| ! | CTCTAAATCTGTTGGTTAGC+TGG | + | tig0039907:5379-5398 | Msa1458900:intron | 40.0% |
| !! | TACAGTCTTTAAGGCTGTGT+TGG | + | tig0039907:5513-5532 | Msa1458900:intron | 40.0% |
| ! | CAAGCTAGCTTATAGCTTCT+TGG | + | tig0039907:5537-5556 | Msa1458900:intron | 40.0% |
| GGTTGAAAACGTGATGTGTT+TGG | + | tig0039907:6303-6322 | Msa1458900:intron | 40.0% | |
| ! | GTAGCTTTTGAGCTTATAGC+TGG | + | tig0039907:6376-6395 | Msa1458900:intron | 40.0% |
| ! | TTCAATAGTGGGAACTACCA+GGG | - | tig0039907:7027-7046 | None:intergenic | 40.0% |
| ! | ATTCAATAGTGGGAACTACC+AGG | - | tig0039907:7028-7047 | None:intergenic | 40.0% |
| TGGTAGTTCCCACTATTGAA+TGG | + | tig0039907:7027-7046 | Msa1458900:intron | 40.0% | |
| GGTAGTTCCCACTATTGAAT+GGG | + | tig0039907:7028-7047 | Msa1458900:intron | 40.0% | |
| GATTTGGCCCATTCAATAGT+GGG | - | tig0039907:7038-7057 | None:intergenic | 40.0% | |
| ! | TGATTTGGCCCATTCAATAG+TGG | - | tig0039907:7039-7058 | None:intergenic | 40.0% |
| GCCAAATCATTTAGTGAGAC+CGG | + | tig0039907:7050-7069 | Msa1458900:intron | 40.0% | |
| ACCGGTCTCACTAAATGATT+TGG | - | tig0039907:7054-7073 | None:intergenic | 40.0% | |
| !! | CAATATGTACATGATGGGTG+GGG | - | tig0039907:7351-7370 | None:intergenic | 40.0% |
| CTATTCTTCTTAGAGGTCTC+TGG | + | tig0039907:7386-7405 | Msa1458900:intron | 40.0% | |
| TTAGGCAAAGTGCATTACTG+AGG | + | tig0039907:7609-7628 | Msa1458900:intron | 40.0% | |
| AAGCAAGTACACAAGTCTAC+TGG | + | tig0039907:7636-7655 | Msa1458900:CDS | 40.0% | |
| CACAAGTCTACTGGAATTAC+TGG | + | tig0039907:7645-7664 | Msa1458900:CDS | 40.0% | |
| TGGTAGCTCAGAGATAACTT+TGG | - | tig0039907:7673-7692 | None:intergenic | 40.0% | |
| ATTACCTTCTTCAGTGGCTT+CGG | - | tig0039907:7707-7726 | None:intergenic | 40.0% | |
| TCCAACTGTGATTCAAGATG+AGG | + | tig0039907:7837-7856 | Msa1458900:CDS | 40.0% | |
| TCCTCATCTTGAATCACAGT+TGG | - | tig0039907:7841-7860 | None:intergenic | 40.0% | |
| TATGGCCAAGACACTTGAAA+TGG | - | tig0039907:7945-7964 | None:intergenic | 40.0% | |
| TAGATTGCGAAGACTAGGAA+TGG | + | tig0039907:8206-8225 | Msa1458900:three_prime_UTR | 40.0% | |
| CCCACAAATGGAATGAGAAG+TGG | + | tig0039907:217-236 | Msa1458900:intron | 45.0% | |
| CCCACTTCTCATTCCATTTG+TGG | - | tig0039907:221-240 | None:intergenic | 45.0% | |
| TGTTTACTCTGATCTGGTCG+AGG | + | tig0039907:276-295 | Msa1458900:intron | 45.0% | |
| TTGCAACTGCCGGAAATCAT+AGG | - | tig0039907:338-357 | None:intergenic | 45.0% | |
| ATGATTTCCGGCAGTTGCAA+TGG | + | tig0039907:338-357 | Msa1458900:intron | 45.0% | |
| AAAGAAGCCATTGCAACTGC+CGG | - | tig0039907:348-367 | None:intergenic | 45.0% | |
| ACCACTTGAGTTACACCTTG+GGG | - | tig0039907:819-838 | None:intergenic | 45.0% | |
| CAACCACTTGAGTTACACCT+TGG | - | tig0039907:821-840 | None:intergenic | 45.0% | |
| GGGAGGTTGTTCAAATCCAT+AGG | + | tig0039907:993-1012 | Msa1458900:intron | 45.0% | |
| GAACATGTGGTAGAATGAGG+TGG | + | tig0039907:1123-1142 | Msa1458900:intron | 45.0% | |
| CGATAAAAGGTGGGGAAACA+TGG | + | tig0039907:1227-1246 | Msa1458900:intron | 45.0% | |
| ! | GATATTGTGGAATGGTGGAG+AGG | - | tig0039907:1373-1392 | None:intergenic | 45.0% |
| TTCTATCTCTCCCAACTTCC+TGG | + | tig0039907:1471-1490 | Msa1458900:intron | 45.0% | |
| TTTGTAACTGTGTGTGGTGG+GGG | + | tig0039907:1521-1540 | Msa1458900:intron | 45.0% | |
| CAATTATGCATGCCAGGTGT+TGG | - | tig0039907:1601-1620 | None:intergenic | 45.0% | |
| CAACACCTGGCATGCATAAT+TGG | + | tig0039907:1599-1618 | Msa1458900:intron | 45.0% | |
| ! | TAATATGTTCATGGTGGGGG+CGG | + | tig0039907:1712-1731 | Msa1458900:intron | 45.0% |
| !! | ATGGTTGGTAACAGTGGATG+TGG | + | tig0039907:2139-2158 | Msa1458900:intron | 45.0% |
| !! | TGGTTGGTAACAGTGGATGT+GGG | + | tig0039907:2140-2159 | Msa1458900:intron | 45.0% |
| CAGTTATCTTTCTCGAGGAG+GGG | + | tig0039907:2212-2231 | Msa1458900:intron | 45.0% | |
| ! | TCACAACAACTATGGTGGTG+AGG | + | tig0039907:2279-2298 | Msa1458900:intron | 45.0% |
| GGAGTTAGACAGGGATTCTT+AGG | - | tig0039907:2373-2392 | None:intergenic | 45.0% | |
| ATCACAAAGCAGGTTTCAGG+TGG | - | tig0039907:2512-2531 | None:intergenic | 45.0% | |
| GGAATCACAAAGCAGGTTTC+AGG | - | tig0039907:2515-2534 | None:intergenic | 45.0% | |
| GACCCTTTCATTCCCAAAAC+TGG | + | tig0039907:2694-2713 | Msa1458900:intron | 45.0% | |
| ! | CTTGCCTTCAATCTAGCTTG+AGG | - | tig0039907:2763-2782 | None:intergenic | 45.0% |
| CTCAAGCTAGATTGAAGGCA+AGG | + | tig0039907:2761-2780 | Msa1458900:intron | 45.0% | |
| TCTTAAGCTTGGCCTGTGTA+AGG | + | tig0039907:2971-2990 | Msa1458900:intron | 45.0% | |
| TGGAGTTATGCTCCTTACAC+AGG | - | tig0039907:2986-3005 | None:intergenic | 45.0% | |
| TGGTGCTTGATGTTTGTCCT+GGG | + | tig0039907:3093-3112 | Msa1458900:intron | 45.0% | |
| ! | AAATGTGGGCTGAGTTCACT+TGG | - | tig0039907:3313-3332 | None:intergenic | 45.0% |
| TGTTTCTCGACTGACCCATT+TGG | + | tig0039907:3814-3833 | Msa1458900:CDS | 45.0% | |
| ACCTTTCTTGGGAGTAAGTC+AGG | + | tig0039907:3906-3925 | Msa1458900:intron | 45.0% | |
| ACCTGACTTACTCCCAAGAA+AGG | - | tig0039907:3910-3929 | None:intergenic | 45.0% | |
| ! | TTAGACACGGGGAAGAGTAT+TGG | + | tig0039907:3988-4007 | Msa1458900:CDS | 45.0% |
| !! | TAGACACGGGGAAGAGTATT+GGG | + | tig0039907:3989-4008 | Msa1458900:CDS | 45.0% |
| CTATCAACTGCAAGGAGCTA+AGG | + | tig0039907:4236-4255 | Msa1458900:CDS | 45.0% | |
| AGTTGAGCGATAAGGTGGTT+TGG | + | tig0039907:4828-4847 | Msa1458900:intron | 45.0% | |
| TTTGGTTGTGGAAGAGAGGT+TGG | + | tig0039907:4846-4865 | Msa1458900:intron | 45.0% | |
| GAAGAGAGGTTGGAGTGATA+TGG | + | tig0039907:4856-4875 | Msa1458900:intron | 45.0% | |
| !! | GACAACATTTTGACAGCTGG+TGG | - | tig0039907:5190-5209 | None:intergenic | 45.0% |
| TTCAACTGCCCCTTCTATGT+TGG | + | tig0039907:5301-5320 | Msa1458900:CDS | 45.0% | |
| GGTATGTCAAACTGGCTACA+AGG | + | tig0039907:5322-5341 | Msa1458900:CDS | 45.0% | |
| AAAAGCTAGCTGGTAGCTGA+TGG | - | tig0039907:6134-6153 | None:intergenic | 45.0% | |
| CTGATAGCTGAAAAGCTAGC+TGG | - | tig0039907:6144-6163 | None:intergenic | 45.0% | |
| ! | GGGAAAATCATGGCTCTGTT+TGG | - | tig0039907:7007-7026 | None:intergenic | 45.0% |
| ! | AACAGAGCCATGATTTTCCC+TGG | + | tig0039907:7007-7026 | Msa1458900:intron | 45.0% |
| GGAACTACCAGGGAAAATCA+TGG | - | tig0039907:7017-7036 | None:intergenic | 45.0% | |
| TGTACTCCACCAAATTCTGC+AGG | + | tig0039907:7775-7794 | Msa1458900:intron | 45.0% | |
| TTTCCACCTGCAGAATTTGG+TGG | - | tig0039907:7784-7803 | None:intergenic | 45.0% | |
| ACCAAATTCTGCAGGTGGAA+AGG | + | tig0039907:7783-7802 | Msa1458900:intron | 45.0% | |
| ACCTTTCCACCTGCAGAATT+TGG | - | tig0039907:7787-7806 | None:intergenic | 45.0% | |
| GAATACACCACGTACCAAGA+GGG | - | tig0039907:7819-7838 | None:intergenic | 45.0% | |
| TAGAGGGCTGGAGTTGAATT+CGG | + | tig0039907:7974-7993 | Msa1458900:three_prime_UTR | 45.0% | |
| ! | CCTAGTCTTCGCAATCTACA+TGG | - | tig0039907:8204-8223 | None:intergenic | 45.0% |
| CCATGTAGATTGCGAAGACT+AGG | + | tig0039907:8201-8220 | Msa1458900:three_prime_UTR | 45.0% | |
| !! | TTGAAATATTATTAAAAAAT+AGG | - | tig0039907:4544-4563 | None:intergenic | 5.0% |
| !! | AAATTAAACTATATTATAAA+AGG | - | tig0039907:5696-5715 | None:intergenic | 5.0% |
| TTACTCTGATCTGGTCGAGG+TGG | + | tig0039907:279-298 | Msa1458900:intron | 50.0% | |
| ! | GTTTTCGTTTACCAGCGCGT+AGG | + | tig0039907:301-320 | Msa1458900:intron | 50.0% |
| ! | AACGATTCTAAGGGCAGGCT+TGG | - | tig0039907:564-583 | None:intergenic | 50.0% |
| GAGTATCATCTAGTCCCCCA+AGG | + | tig0039907:801-820 | Msa1458900:intron | 50.0% | |
| CCACTTGAGTTACACCTTGG+GGG | - | tig0039907:818-837 | None:intergenic | 50.0% | |
| ! | AATATGTTCATGGTGGGGGC+GGG | + | tig0039907:1713-1732 | Msa1458900:intron | 50.0% |
| AAACATAGCCATGATCGGGC+TGG | + | tig0039907:1943-1962 | Msa1458900:CDS | 50.0% | |
| TTATCTTTCTCGAGGAGGGG+AGG | + | tig0039907:2215-2234 | Msa1458900:intron | 50.0% | |
| TATCTTTCTCGAGGAGGGGA+GGG | + | tig0039907:2216-2235 | Msa1458900:intron | 50.0% | |
| TACTATTGGGTCGAAGACGG+TGG | - | tig0039907:2253-2272 | None:intergenic | 50.0% | |
| ! | AAAGCAGGTTTCAGGTGGCT+TGG | - | tig0039907:2507-2526 | None:intergenic | 50.0% |
| CTGGTGCTTGATGTTTGTCC+TGG | + | tig0039907:3092-3111 | Msa1458900:intron | 50.0% | |
| GTGCTTGATGTTTGTCCTGG+TGG | + | tig0039907:3095-3114 | Msa1458900:intron | 50.0% | |
| CTTGATGTTTGTCCTGGTGG+TGG | + | tig0039907:3098-3117 | Msa1458900:intron | 50.0% | |
| CTGGTGCTTGATGTTTGTCC+TGG | + | tig0039907:3092-3111 | Msa1458900:intron | 50.0% | |
| TGCTTGATGTTTGTCCTGGG+TGG | + | tig0039907:3215-3234 | Msa1458900:intron | 50.0% | |
| TTGATGTTTGTCCTGGGTGG+TGG | + | tig0039907:3218-3237 | Msa1458900:intron | 50.0% | |
| ! | TGAATCTGGTTTGAAGGCCG+AGG | + | tig0039907:4363-4382 | Msa1458900:intron | 50.0% |
| !! | GCGATAAGGTGGTTTGGTTG+TGG | + | tig0039907:4834-4853 | Msa1458900:intron | 50.0% |
| !! | GTGGTTTGGTTGTGGAAGAG+AGG | + | tig0039907:4842-4861 | Msa1458900:intron | 50.0% |
| GAGAGGTTGGAGTGATATGG+AGG | + | tig0039907:4859-4878 | Msa1458900:intron | 50.0% | |
| TGGAGTGATATGGAGGTCAC+AGG | + | tig0039907:4866-4885 | Msa1458900:intron | 50.0% | |
| AGAGAGCCTTAGGGTGTGTT+TGG | - | tig0039907:6195-6214 | None:intergenic | 50.0% | |
| !! | TATGTACATGATGGGTGGGG+TGG | - | tig0039907:7348-7367 | None:intergenic | 50.0% |
| ! | TGGCTTCGGCACATCTTTTC+TGG | - | tig0039907:7693-7712 | None:intergenic | 50.0% |
| ACTCCACCAAATTCTGCAGG+TGG | + | tig0039907:7778-7797 | Msa1458900:intron | 50.0% | |
| ! | AAGGTATCAGAGCACCCTCT+TGG | + | tig0039907:7802-7821 | Msa1458900:CDS | 50.0% |
| GGAATACACCACGTACCAAG+AGG | - | tig0039907:7820-7839 | None:intergenic | 50.0% | |
| TGGCCATATGCCGATGATAG+AGG | + | tig0039907:7957-7976 | Msa1458900:three_prime_UTR | 50.0% | |
| GGCCATATGCCGATGATAGA+GGG | + | tig0039907:7958-7977 | Msa1458900:three_prime_UTR | 50.0% | |
| AGCCCTCTATCATCGGCATA+TGG | - | tig0039907:7963-7982 | None:intergenic | 50.0% | |
| ATATGCCGATGATAGAGGGC+TGG | + | tig0039907:7962-7981 | Msa1458900:three_prime_UTR | 50.0% | |
| CAACTCCAGCCCTCTATCAT+CGG | - | tig0039907:7970-7989 | None:intergenic | 50.0% | |
| TTCGTTTACCAGCGCGTAGG+CGG | + | tig0039907:304-323 | Msa1458900:intron | 55.0% | |
| CCCCCAAGGTGTAACTCAAG+TGG | + | tig0039907:815-834 | Msa1458900:intron | 55.0% | |
| CATGGAATCCAGCCCGATCA+TGG | - | tig0039907:1954-1973 | None:intergenic | 55.0% | |
| ! | CGGGCTGGATTCCATGCAAA+AGG | + | tig0039907:1958-1977 | Msa1458900:CDS | 55.0% |
| ATCTTTCTCGAGGAGGGGAG+GGG | + | tig0039907:2217-2236 | Msa1458900:intron | 55.0% | |
| !! | GATGTTTGTCCTGGTGGTGG+TGG | + | tig0039907:3101-3120 | Msa1458900:intron | 55.0% |
| ! | ATGTTTGTCCTGGGTGGTGG+TGG | + | tig0039907:3221-3240 | Msa1458900:intron | 55.0% |
| GTGATAGATGAGGGTGGCGT+GGG | + | tig0039907:3476-3495 | Msa1458900:intron | 55.0% | |
| !!! | GGTGGCGTGGGCCATTTTTT+CGG | + | tig0039907:3488-3507 | Msa1458900:intron | 55.0% |
| GAAGGCCGAGGAGTTGCATA+TGG | + | tig0039907:4375-4394 | Msa1458900:intron | 55.0% | |
| TCCAACTCTTCAACTCCCCC+AGG | + | tig0039907:4889-4908 | Msa1458900:intron | 55.0% | |
| TCCTGGGGGAGTTGAAGAGT+TGG | - | tig0039907:4893-4912 | None:intergenic | 55.0% | |
| TGTGCCGAAGCCACTGAAGA+AGG | + | tig0039907:7700-7719 | Msa1458900:CDS | 55.0% | |
| AACTTAGACCGCCTACGCGC+TGG | - | tig0039907:315-334 | None:intergenic | 60.0% | |
| TTGGGTCGAAGACGGTGGTC+AGG | - | tig0039907:2248-2267 | None:intergenic | 60.0% | |
| GGTGATAGATGAGGGTGGCG+TGG | + | tig0039907:3475-3494 | Msa1458900:intron | 60.0% | |
| !! | ACATGATGGGTGGGGTGGAG+TGG | - | tig0039907:7343-7362 | None:intergenic | 60.0% |
| ! | CAGAGCACCCTCTTGGTACG+TGG | + | tig0039907:7809-7828 | Msa1458900:CDS | 60.0% |
| GTCGTGCTTCCACCACCACC+AGG | - | tig0039907:3113-3132 | None:intergenic | 65.0% | |
| GATGGGTGGGGTGGAGTGGA+AGG | - | tig0039907:7339-7358 | None:intergenic | 65.0% | |
| CGGTGCTTCCACCACCACCC+AGG | - | tig0039907:3232-3251 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0039907 | gene | 66 | 8229 | 66 | ID=Msa1458900;Name=Msa1458900 |
| tig0039907 | mRNA | 66 | 8229 | 66 | ID=Msa1458900-mRNA-1;Parent=Msa1458900;Name=Msa1458900-mRNA-1;_AED=0.18;_eAED=0.19;_QI=0|0.8|0.72|1|1|1|11|332|303 |
| tig0039907 | exon | 66 | 126 | 66 | ID=Msa1458900-mRNA-1:exon:22001;Parent=Msa1458900-mRNA-1 |
| tig0039907 | exon | 1861 | 2003 | 1861 | ID=Msa1458900-mRNA-1:exon:22002;Parent=Msa1458900-mRNA-1 |
| tig0039907 | exon | 3653 | 3703 | 3653 | ID=Msa1458900-mRNA-1:exon:22003;Parent=Msa1458900-mRNA-1 |
| tig0039907 | exon | 3790 | 3881 | 3790 | ID=Msa1458900-mRNA-1:exon:22004;Parent=Msa1458900-mRNA-1 |
| tig0039907 | exon | 3974 | 4055 | 3974 | ID=Msa1458900-mRNA-1:exon:22005;Parent=Msa1458900-mRNA-1 |
| tig0039907 | exon | 4165 | 4257 | 4165 | ID=Msa1458900-mRNA-1:exon:22006;Parent=Msa1458900-mRNA-1 |
| tig0039907 | exon | 4379 | 4443 | 4379 | ID=Msa1458900-mRNA-1:exon:22007;Parent=Msa1458900-mRNA-1 |
| tig0039907 | exon | 5154 | 5166 | 5154 | ID=Msa1458900-mRNA-1:exon:22008;Parent=Msa1458900-mRNA-1 |
| tig0039907 | exon | 5243 | 5344 | 5243 | ID=Msa1458900-mRNA-1:exon:22009;Parent=Msa1458900-mRNA-1 |
| tig0039907 | exon | 7613 | 7721 | 7613 | ID=Msa1458900-mRNA-1:exon:22010;Parent=Msa1458900-mRNA-1 |
| tig0039907 | exon | 7797 | 8229 | 7797 | ID=Msa1458900-mRNA-1:exon:22011;Parent=Msa1458900-mRNA-1 |
| tig0039907 | CDS | 66 | 126 | 66 | ID=Msa1458900-mRNA-1:cds;Parent=Msa1458900-mRNA-1 |
| tig0039907 | CDS | 1861 | 2003 | 1861 | ID=Msa1458900-mRNA-1:cds;Parent=Msa1458900-mRNA-1 |
| tig0039907 | CDS | 3653 | 3703 | 3653 | ID=Msa1458900-mRNA-1:cds;Parent=Msa1458900-mRNA-1 |
| tig0039907 | CDS | 3790 | 3881 | 3790 | ID=Msa1458900-mRNA-1:cds;Parent=Msa1458900-mRNA-1 |
| tig0039907 | CDS | 3974 | 4055 | 3974 | ID=Msa1458900-mRNA-1:cds;Parent=Msa1458900-mRNA-1 |
| tig0039907 | CDS | 4165 | 4257 | 4165 | ID=Msa1458900-mRNA-1:cds;Parent=Msa1458900-mRNA-1 |
| tig0039907 | CDS | 4379 | 4443 | 4379 | ID=Msa1458900-mRNA-1:cds;Parent=Msa1458900-mRNA-1 |
| tig0039907 | CDS | 5154 | 5166 | 5154 | ID=Msa1458900-mRNA-1:cds;Parent=Msa1458900-mRNA-1 |
| tig0039907 | CDS | 5243 | 5344 | 5243 | ID=Msa1458900-mRNA-1:cds;Parent=Msa1458900-mRNA-1 |
| tig0039907 | CDS | 7613 | 7721 | 7613 | ID=Msa1458900-mRNA-1:cds;Parent=Msa1458900-mRNA-1 |
| tig0039907 | CDS | 7797 | 7897 | 7797 | ID=Msa1458900-mRNA-1:cds;Parent=Msa1458900-mRNA-1 |
| tig0039907 | three_prime_UTR | 7898 | 8229 | 7898 | ID=Msa1458900-mRNA-1:three_prime_utr;Parent=Msa1458900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
