Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725220 | XP_003613729.3 | 92.806 | 278 | 16 | 3 | 1 | 274 | 1 | 278 | 0.0 | 523 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725220 | sp|Q9CYW4|HDHD3_MOUSE | 34.328 | 201 | 121 | 4 | 65 | 254 | 10 | 210 | 6.49e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725220 | A0A396HS47 | 92.806 | 278 | 16 | 3 | 1 | 274 | 1 | 278 | 0.0 | 523 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0725220 | 0.807193 | 5.695820e-50 | -8.615850e-47 |
| Msa0101810 | Msa0725220 | -0.810216 | 1.286918e-50 | -8.615850e-47 |
| Msa0657670 | Msa0725220 | 0.802423 | 5.650984e-49 | -8.615850e-47 |
| Msa0657970 | Msa0725220 | 0.805741 | 1.153017e-49 | -8.615850e-47 |
| Msa0658570 | Msa0725220 | 0.832184 | 1.092775e-55 | -8.615850e-47 |
| Msa0703490 | Msa0725220 | 0.817032 | 4.068479e-52 | -8.615850e-47 |
| Msa0715720 | Msa0725220 | 0.813139 | 2.976846e-51 | -8.615850e-47 |
| Msa0719490 | Msa0725220 | -0.817230 | 3.672677e-52 | -8.615850e-47 |
| Msa0725220 | Msa0769390 | 0.838434 | 2.882296e-57 | -8.615850e-47 |
| Msa0725220 | Msa0776030 | 0.802730 | 4.883153e-49 | -8.615850e-47 |
| Msa0725220 | Msa0789690 | 0.830626 | 2.640912e-55 | -8.615850e-47 |
| Msa0725220 | Msa0802470 | -0.826694 | 2.357419e-54 | -8.615850e-47 |
| Msa0725220 | Msa0831760 | 0.806481 | 8.057167e-50 | -8.615850e-47 |
| Msa0725220 | Msa0832370 | 0.828115 | 1.075350e-54 | -8.615850e-47 |
| Msa0725220 | Msa0844240 | 0.801485 | 8.805756e-49 | -8.615850e-47 |
| Msa0725220 | Msa0845370 | 0.826981 | 2.012963e-54 | -8.615850e-47 |
| Msa0725220 | Msa0853540 | 0.802631 | 5.119138e-49 | -8.615850e-47 |
| Msa0725220 | Msa0880140 | 0.808320 | 3.281402e-50 | -8.615850e-47 |
| Msa0725220 | Msa0885280 | 0.829054 | 6.380965e-55 | -8.615850e-47 |
| Msa0725220 | Msa0891040 | 0.804304 | 2.303105e-49 | -8.615850e-47 |
| Msa0725220 | Msa0902980 | 0.800930 | 1.143679e-48 | -8.615850e-47 |
| Msa0725220 | Msa0909120 | 0.811951 | 5.414829e-51 | -8.615850e-47 |
| Msa0725220 | Msa0990960 | 0.805439 | 1.334287e-49 | -8.615850e-47 |
| Msa0725220 | Msa0991670 | 0.802579 | 5.246945e-49 | -8.615850e-47 |
| Msa0725220 | Msa1014540 | 0.805488 | 1.302953e-49 | -8.615850e-47 |
| Msa0725220 | Msa1036390 | 0.812303 | 4.537109e-51 | -8.615850e-47 |
| Msa0725220 | Msa1042710 | 0.805616 | 1.225108e-49 | -8.615850e-47 |
| Msa0725220 | Msa1069310 | 0.829846 | 4.095646e-55 | -8.615850e-47 |
| Msa0725220 | Msa1075220 | -0.829287 | 5.601340e-55 | -8.615850e-47 |
| Msa0725220 | Msa1076680 | 0.801011 | 1.101285e-48 | -8.615850e-47 |
| Msa0725220 | Msa1083410 | 0.814044 | 1.882722e-51 | -8.615850e-47 |
| Msa0725220 | Msa1085300 | 0.815293 | 9.956922e-52 | -8.615850e-47 |
| Msa0725220 | Msa1102150 | 0.804548 | 2.048727e-49 | -8.615850e-47 |
| Msa0725220 | Msa1104000 | 0.819676 | 1.024967e-52 | -8.615850e-47 |
| Msa0725220 | Msa1116130 | -0.815275 | 1.004691e-51 | -8.615850e-47 |
| Msa0725220 | Msa1128160 | 0.810379 | 1.187143e-50 | -8.615850e-47 |
| Msa0725220 | Msa1139000 | -0.820573 | 6.387630e-53 | -8.615850e-47 |
| Msa0725220 | Msa1155470 | 0.803652 | 3.147492e-49 | -8.615850e-47 |
| Msa0725220 | Msa1162550 | -0.828685 | 7.836502e-55 | -8.615850e-47 |
| Msa0725220 | Msa1165360 | 0.810010 | 1.425802e-50 | -8.615850e-47 |
| Msa0725220 | Msa1189430 | 0.805897 | 1.069049e-49 | -8.615850e-47 |
| Msa0725220 | Msa1222970 | 0.832050 | 1.179268e-55 | -8.615850e-47 |
| Msa0725220 | Msa1228210 | 0.814794 | 1.284938e-51 | -8.615850e-47 |
| Msa0725220 | Msa1238930 | 0.825477 | 4.589158e-54 | -8.615850e-47 |
| Msa0725220 | Msa1252390 | 0.804977 | 1.667206e-49 | -8.615850e-47 |
| Msa0725220 | Msa1264020 | 0.821966 | 3.047984e-53 | -8.615850e-47 |
| Msa0725220 | Msa1270610 | 0.802171 | 6.367733e-49 | -8.615850e-47 |
| Msa0725220 | Msa1271280 | 0.811688 | 6.177908e-51 | -8.615850e-47 |
| Msa0725220 | Msa1271300 | 0.827277 | 1.709369e-54 | -8.615850e-47 |
| Msa0725220 | Msa1283860 | 0.822642 | 2.123840e-53 | -8.615850e-47 |
| Msa0725220 | Msa1296960 | -0.802687 | 4.984133e-49 | -8.615850e-47 |
| Msa0725220 | Msa1308380 | 0.804766 | 1.845123e-49 | -8.615850e-47 |
| Msa0725220 | Msa1322890 | 0.815544 | 8.753664e-52 | -8.615850e-47 |
| Msa0725220 | Msa1324550 | 0.814335 | 1.623786e-51 | -8.615850e-47 |
| Msa0725220 | Msa1324780 | 0.813090 | 3.051885e-51 | -8.615850e-47 |
| Msa0725220 | Msa1335860 | 0.812610 | 3.887049e-51 | -8.615850e-47 |
| Msa0725220 | Msa1353530 | 0.808628 | 2.820863e-50 | -8.615850e-47 |
| Msa0725220 | Msa1358960 | 0.805398 | 1.361203e-49 | -8.615850e-47 |
| Msa0725220 | Msa1367080 | 0.846320 | 2.338751e-59 | -8.615850e-47 |
| Msa0725220 | Msa1376890 | 0.830044 | 3.665425e-55 | -8.615850e-47 |
| Msa0725220 | Msa1378760 | 0.826590 | 2.496000e-54 | -8.615850e-47 |
| Msa0725220 | Msa1393410 | 0.801845 | 7.430763e-49 | -8.615850e-47 |
| Msa0725220 | Msa1401530 | 0.805367 | 1.381214e-49 | -8.615850e-47 |
| Msa0725220 | Msa1427760 | 0.811108 | 8.256141e-51 | -8.615850e-47 |
| Msa0725220 | Msa1435420 | 0.800640 | 1.310737e-48 | -8.615850e-47 |
| Msa0725220 | Msa1438270 | 0.822570 | 2.206978e-53 | -8.615850e-47 |
| Msa0725220 | Msa1445610 | -0.801263 | 9.779653e-49 | -8.615850e-47 |
| Msa0725220 | Msa1458900 | 0.809621 | 1.728151e-50 | -8.615850e-47 |
| Msa0157290 | Msa0725220 | 0.806901 | 6.567523e-50 | -8.615850e-47 |
| Msa0171300 | Msa0725220 | 0.805316 | 1.416057e-49 | -8.615850e-47 |
| Msa0179280 | Msa0725220 | 0.825042 | 5.814425e-54 | -8.615850e-47 |
| Msa0190830 | Msa0725220 | 0.807725 | 4.392972e-50 | -8.615850e-47 |
| Msa0201070 | Msa0725220 | 0.822253 | 2.615285e-53 | -8.615850e-47 |
| Msa0226890 | Msa0725220 | 0.807030 | 6.168378e-50 | -8.615850e-47 |
| Msa0416520 | Msa0725220 | 0.805942 | 1.046406e-49 | -8.615850e-47 |
| Msa0423090 | Msa0725220 | 0.804230 | 2.386784e-49 | -8.615850e-47 |
| Msa0469240 | Msa0725220 | 0.807662 | 4.530392e-50 | -8.615850e-47 |
| Msa0480980 | Msa0725220 | 0.828470 | 8.833774e-55 | -8.615850e-47 |
| Msa0258760 | Msa0725220 | 0.817258 | 3.620535e-52 | -8.615850e-47 |
| Msa0266000 | Msa0725220 | -0.835239 | 1.883795e-56 | -8.615850e-47 |
| Msa0311580 | Msa0725220 | 0.804256 | 2.356712e-49 | -8.615850e-47 |
| Msa0331920 | Msa0725220 | 0.806443 | 8.206289e-50 | -8.615850e-47 |
| Msa0333720 | Msa0725220 | -0.814579 | 1.433865e-51 | -8.615850e-47 |
| Msa0492880 | Msa0725220 | 0.821930 | 3.106896e-53 | -8.615850e-47 |
| Msa0497780 | Msa0725220 | 0.806202 | 9.223780e-50 | -8.615850e-47 |
| Msa0533070 | Msa0725220 | 0.826775 | 2.254291e-54 | -8.615850e-47 |
| Msa0536220 | Msa0725220 | 0.800890 | 1.165341e-48 | -8.615850e-47 |
| Msa0538700 | Msa0725220 | 0.802726 | 4.892516e-49 | -8.615850e-47 |
| Msa0548280 | Msa0725220 | -0.807592 | 4.689349e-50 | -8.615850e-47 |
| Msa0566500 | Msa0725220 | -0.800897 | 1.161449e-48 | -8.615850e-47 |
| Msa0567020 | Msa0725220 | 0.804042 | 2.611323e-49 | -8.615850e-47 |
| Msa0581760 | Msa0725220 | 0.829980 | 3.799480e-55 | -8.615850e-47 |
| Msa0590840 | Msa0725220 | 0.802767 | 4.797677e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725220 | MtrunA17_Chr5g0416861 | 92.806 | 278 | 16 | 3 | 1 | 274 | 1 | 278 | 0.0 | 523 |
| Msa0725220 | MtrunA17_Chr7g0231601 | 92.000 | 275 | 21 | 1 | 1 | 274 | 1 | 275 | 0.0 | 521 |
| Msa0725220 | MtrunA17_Chr7g0256641 | 48.113 | 212 | 106 | 3 | 61 | 269 | 63 | 273 | 5.57e-68 | 212 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725220 | AT1G14310.1 | 71.495 | 214 | 61 | 0 | 60 | 273 | 40 | 253 | 4.90e-118 | 338 |
| Msa0725220 | AT2G41250.1 | 46.190 | 210 | 111 | 2 | 62 | 269 | 77 | 286 | 1.75e-56 | 183 |
Find 87 sgRNAs with CRISPR-Local
Find 319 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGATTTGAATTTCGGAAAT+TGG | 0.123909 | 5_1:+24782573 | None:intergenic |
| CTAAGAAAATCTTATCATTT+TGG | 0.171381 | 5_1:-24777689 | Msa0725220:three_prime_UTR |
| AAAATAAATTGTATTAATAT+TGG | 0.183147 | 5_1:-24782698 | None:intergenic |
| AATATTATGCCTCTGGATTA+AGG | 0.258606 | 5_1:+24778030 | None:intergenic |
| CGAGAGTAACAAACCGTATT+TGG | 0.280416 | 5_1:+24782375 | None:intergenic |
| GAAACTACAAATTTCCAAAA+TGG | 0.281844 | 5_1:+24779566 | None:intergenic |
| TGGGAACAAGATTTGAATTT+CGG | 0.287556 | 5_1:+24782566 | None:intergenic |
| AGAGAGTGGAAGTGATGAAT+TGG | 0.296251 | 5_1:+24782546 | None:intergenic |
| GAGCATACTTATGCCACTAT+TGG | 0.320572 | 5_1:-24782400 | Msa0725220:CDS |
| AAATAAATTGTATTAATATT+GGG | 0.320717 | 5_1:-24782697 | None:intergenic |
| CCTTAAGCGAGAGTCGAAAT+TGG | 0.323043 | 5_1:+24779102 | None:intergenic |
| GATCAAAAGGCAGATAAATT+CGG | 0.345700 | 5_1:-24778217 | Msa0725220:CDS |
| AGATTTGAATTTCGGAAATT+GGG | 0.365491 | 5_1:+24782574 | None:intergenic |
| CAGGATTGGCCAATTGCAAC+AGG | 0.374423 | 5_1:+24782425 | None:intergenic |
| AACCCCTGCTTTATCTCAGC+TGG | 0.379967 | 5_1:+24780477 | None:intergenic |
| AAAGTCTTCGTCTCCGCAAC+CGG | 0.382971 | 5_1:+24779535 | None:intergenic |
| AGGGTGATGGGAGGCCATTT+TGG | 0.390702 | 5_1:-24779580 | Msa0725220:CDS |
| GCCACTATTGGATCCAAATA+CGG | 0.392126 | 5_1:-24782388 | Msa0725220:intron |
| ATCAAAAGGCAGATAAATTC+GGG | 0.399235 | 5_1:-24778216 | Msa0725220:CDS |
| CCAATTTCGACTCTCGCTTA+AGG | 0.402293 | 5_1:-24779102 | Msa0725220:CDS |
| GATATGTCAAAACAGGTTAT+GGG | 0.403961 | 5_1:-24778093 | Msa0725220:intron |
| GTGGCATAAGTATGCTCAAC+AGG | 0.404742 | 5_1:+24782406 | None:intergenic |
| CATGGTCATAGCGGTGGGAC+TGG | 0.410230 | 5_1:-24782487 | Msa0725220:CDS |
| GAGAGTGGAAGTGATGAATT+GGG | 0.427984 | 5_1:+24782547 | None:intergenic |
| GCAATCTATCCCTACGTCAT+TGG | 0.433325 | 5_1:+24778192 | None:intergenic |
| ATGGTCATAGCGGTGGGACT+GGG | 0.440326 | 5_1:-24782486 | Msa0725220:CDS |
| GTTTCTGAAGCCACCGGTTG+CGG | 0.453257 | 5_1:-24779548 | Msa0725220:CDS |
| TGGAGTATTCGTGTATTACT+AGG | 0.461468 | 5_1:-24777669 | Msa0725220:three_prime_UTR |
| ATGACGTAGGGATAGATTGC+TGG | 0.463114 | 5_1:-24778189 | Msa0725220:intron |
| AAAATATTTCAAGCTGCTCT+AGG | 0.479897 | 5_1:-24778812 | Msa0725220:intron |
| TTCCACTCTCTTCTTCAATA+CGG | 0.481169 | 5_1:-24782534 | Msa0725220:CDS |
| TGGAGGCACCCTGTTGCAAT+TGG | 0.484119 | 5_1:-24782434 | Msa0725220:CDS |
| TAACGAACGAGAATGGCAAA+TGG | 0.487013 | 5_1:-24782659 | Msa0725220:exon |
| CATTGTGTCAAAAGCTCCGT+TGG | 0.494580 | 5_1:+24779271 | None:intergenic |
| TTGATCATCTCCTATGTGCA+AGG | 0.494581 | 5_1:+24778234 | None:intergenic |
| TTGTATCAGCACTATGCAAA+AGG | 0.495938 | 5_1:-24779311 | Msa0725220:intron |
| TTGTATTTACTACAGGGTGA+TGG | 0.498594 | 5_1:-24779593 | Msa0725220:intron |
| TCGCTTAAGGAAGCTATTGA+AGG | 0.502464 | 5_1:-24779089 | Msa0725220:CDS |
| AATAAGTAATATTATGCCTC+TGG | 0.504476 | 5_1:+24778023 | None:intergenic |
| ATGCCTCTGGATTAAGGATG+CGG | 0.508571 | 5_1:+24778036 | None:intergenic |
| ATGACTCTTCTCAAGGATGC+TGG | 0.508682 | 5_1:-24779251 | Msa0725220:CDS |
| TGTATTTACTACAGGGTGAT+GGG | 0.508825 | 5_1:-24779592 | Msa0725220:intron |
| GGTATATGACGCATTACTGT+TGG | 0.515328 | 5_1:-24782461 | Msa0725220:CDS |
| AACGAACGAGAATGGCAAAT+GGG | 0.522907 | 5_1:-24782658 | Msa0725220:exon |
| ATAAGTATGCTCAACAGGAT+TGG | 0.524660 | 5_1:+24782411 | None:intergenic |
| AAAGGAGCAAGGTGCTCTCA+TGG | 0.525552 | 5_1:-24782505 | Msa0725220:CDS |
| TGCTCTCATGGTCATAGCGG+TGG | 0.531203 | 5_1:-24782493 | Msa0725220:CDS |
| GGGTTTCAGAGCTTTGAAGA+AGG | 0.531266 | 5_1:+24782594 | None:intergenic |
| GACGCATTACTGTTGGATGC+TGG | 0.533706 | 5_1:-24782454 | Msa0725220:CDS |
| GATCAATTAAATGTAGAGGC+TGG | 0.533838 | 5_1:-24778262 | Msa0725220:CDS |
| GCAGATAACATAGACTCCTC+TGG | 0.535527 | 5_1:+24777924 | None:intergenic |
| GTCATTATATCATCAGAGGT+TGG | 0.537154 | 5_1:-24778854 | Msa0725220:CDS |
| TGACACAATGACTCTTCTCA+AGG | 0.537225 | 5_1:-24779258 | Msa0725220:CDS |
| GCACATAGGAGATGATCAAA+AGG | 0.538144 | 5_1:-24778230 | Msa0725220:CDS |
| GAATCCAGCTGAGATAAAGC+AGG | 0.541045 | 5_1:-24780481 | Msa0725220:CDS |
| ACCGTATTTGGATCCAATAG+TGG | 0.547054 | 5_1:+24782387 | None:intergenic |
| TAGTACATAACGAACGAGAA+TGG | 0.549064 | 5_1:-24782666 | Msa0725220:five_prime_UTR |
| AAACAGTGACACAGTTAAGA+TGG | 0.552732 | 5_1:-24779134 | Msa0725220:intron |
| TTTGTAGTTTCTGAAGCCAC+CGG | 0.553852 | 5_1:-24779554 | Msa0725220:CDS |
| GCTCTCATGGTCATAGCGGT+GGG | 0.566665 | 5_1:-24782492 | Msa0725220:CDS |
| GTCATAGCGGTGGGACTGGG+AGG | 0.571617 | 5_1:-24782483 | Msa0725220:CDS |
| ATATGTCAAAACAGGTTATG+GGG | 0.583954 | 5_1:-24778092 | Msa0725220:intron |
| ATTGTGTCAAAAGCTCCGTT+GGG | 0.586008 | 5_1:+24779272 | None:intergenic |
| TGTAGATCAATTAAATGTAG+AGG | 0.592869 | 5_1:-24778266 | Msa0725220:intron |
| TGCAGTCATTATATCATCAG+AGG | 0.598140 | 5_1:-24778858 | Msa0725220:CDS |
| AATTCGGGGCCAATGACGTA+GGG | 0.606381 | 5_1:-24778201 | Msa0725220:CDS |
| AATCCAGCTGAGATAAAGCA+GGG | 0.607959 | 5_1:-24780480 | Msa0725220:CDS |
| GTCTTCGTCTCCGCAACCGG+TGG | 0.611501 | 5_1:+24779538 | None:intergenic |
| TCATAGCGGTGGGACTGGGA+GGG | 0.613452 | 5_1:-24782482 | Msa0725220:CDS |
| ACTATGCAAAAGGTGATGCA+TGG | 0.630951 | 5_1:-24779301 | Msa0725220:CDS |
| GCTGGCAAAGCCTTGCACAT+AGG | 0.632234 | 5_1:-24778244 | Msa0725220:CDS |
| ATCCGTATTGAAGAAGAGAG+TGG | 0.633980 | 5_1:+24782532 | None:intergenic |
| AAATTCGGGGCCAATGACGT+AGG | 0.638294 | 5_1:-24778202 | Msa0725220:CDS |
| TACGGATCAACAAAGGAGCA+AGG | 0.638438 | 5_1:-24782516 | Msa0725220:CDS |
| TCTTCAATACGGATCAACAA+AGG | 0.642550 | 5_1:-24782523 | Msa0725220:CDS |
| GATGCATGGCATCTTCCCAA+CGG | 0.645781 | 5_1:-24779287 | Msa0725220:CDS |
| ATTTACTACAGGGTGATGGG+AGG | 0.664583 | 5_1:-24779589 | Msa0725220:intron |
| AATCCGCATCCTTAATCCAG+AGG | 0.670851 | 5_1:-24778039 | Msa0725220:CDS |
| ACTCTTCTCAAGGATGCTGG+AGG | 0.671993 | 5_1:-24779248 | Msa0725220:intron |
| TATGTCAAAACAGGTTATGG+GGG | 0.672904 | 5_1:-24778091 | Msa0725220:intron |
| AGGATTGGCCAATTGCAACA+GGG | 0.678275 | 5_1:+24782426 | None:intergenic |
| TCACTCGTGAGTTGAATGTG+TGG | 0.702695 | 5_1:+24777852 | None:intergenic |
| AAAATGAAAGCAATCACCAG+AGG | 0.705857 | 5_1:-24777940 | Msa0725220:three_prime_UTR |
| GCATTACTGTTGGATGCTGG+AGG | 0.719310 | 5_1:-24782451 | Msa0725220:CDS |
| AGGTGCTCTCATGGTCATAG+CGG | 0.723488 | 5_1:-24782496 | Msa0725220:CDS |
| TCAAAAGGCAGATAAATTCG+GGG | 0.739827 | 5_1:-24778215 | Msa0725220:CDS |
| ATCCAGCTGAGATAAAGCAG+GGG | 0.746828 | 5_1:-24780479 | Msa0725220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAATTTTTAGTTATGT+TGG | + | chr5_1:24781003-24781022 | None:intergenic | 10.0% |
| !! | TAAACTTATAAAGGATAATT+AGG | - | chr5_1:24778109-24778128 | Msa0725220:intron | 15.0% |
| !! | AACTTATGAATTAACATAAA+AGG | + | chr5_1:24778494-24778513 | None:intergenic | 15.0% |
| !! | TAAAAATTAAAATGACCTAT+TGG | - | chr5_1:24781010-24781029 | Msa0725220:intron | 15.0% |
| !!! | GTTTTTAATGTTTCATTTTT+TGG | - | chr5_1:24781453-24781472 | Msa0725220:intron | 15.0% |
| !! | TGATTTAAAGAAGAAAAAAA+AGG | + | chr5_1:24781698-24781717 | None:intergenic | 15.0% |
| !! | ACATTCAATAAAACAAAAAA+TGG | - | chr5_1:24781945-24781964 | Msa0725220:intron | 15.0% |
| !!! | ATTAAGTTGTTTATCCAAAT+AGG | - | chr5_1:24778070-24778089 | Msa0725220:CDS | 20.0% |
| !!! | AAATTTTTGAACAACCATAT+TGG | + | chr5_1:24778213-24778232 | None:intergenic | 20.0% |
| !!! | TCTCTAAACATTTTTATACT+AGG | - | chr5_1:24778278-24778297 | Msa0725220:intron | 20.0% |
| !!! | CTCTAAACATTTTTATACTA+GGG | - | chr5_1:24778279-24778298 | Msa0725220:intron | 20.0% |
| !! | AAAAAATAAGTCAATCCAAA+CGG | - | chr5_1:24778627-24778646 | Msa0725220:intron | 20.0% |
| !! | AGTAAAAAATGATATGCTAT+AGG | - | chr5_1:24778683-24778702 | Msa0725220:intron | 20.0% |
| !!! | TATAGTTTGTTAGATAAAAC+CGG | - | chr5_1:24779649-24779668 | Msa0725220:intron | 20.0% |
| !!! | TAATGAGTATATTTGTTAAG+AGG | + | chr5_1:24779741-24779760 | None:intergenic | 20.0% |
| !! | CCAAAAAGAATAATAATAGA+AGG | + | chr5_1:24779808-24779827 | None:intergenic | 20.0% |
| !!! | CCTTCTATTATTATTCTTTT+TGG | - | chr5_1:24779805-24779824 | Msa0725220:intron | 20.0% |
| !! | AACAAAAATGGAATTGATAT+AGG | - | chr5_1:24780252-24780271 | Msa0725220:intron | 20.0% |
| !! | ACAAAAATGGAATTGATATA+GGG | - | chr5_1:24780253-24780272 | Msa0725220:intron | 20.0% |
| !!! | AAACTCAATTGAGAAATTTT+CGG | + | chr5_1:24780434-24780453 | None:intergenic | 20.0% |
| !! | AAATGTTAAGAACACAAATT+TGG | + | chr5_1:24780596-24780615 | None:intergenic | 20.0% |
| !! | AGAAAATATCTAATGTAACA+TGG | + | chr5_1:24780643-24780662 | None:intergenic | 20.0% |
| !! | AAAACAGATATCTGTTTAAT+TGG | - | chr5_1:24780698-24780717 | Msa0725220:intron | 20.0% |
| !! | ATATCTGTTTAATTGGTAAA+TGG | - | chr5_1:24780705-24780724 | Msa0725220:intron | 20.0% |
| !! | TACTAACTACATTTCATTAT+TGG | - | chr5_1:24781336-24781355 | Msa0725220:intron | 20.0% |
| !! | ACTAACTACATTTCATTATT+GGG | - | chr5_1:24781337-24781356 | Msa0725220:intron | 20.0% |
| !!! | AATATGTGAAACATTTGTTT+TGG | + | chr5_1:24781657-24781676 | None:intergenic | 20.0% |
| !!! | ATGTTCTTTTATATATGCTA+AGG | + | chr5_1:24781748-24781767 | None:intergenic | 20.0% |
| !!! | TATTTTTGACAAATCTGTTT+AGG | - | chr5_1:24782477-24782496 | Msa0725220:CDS | 20.0% |
| !!! | AATTAGAGATTTTGATGTAT+TGG | - | chr5_1:24782574-24782593 | Msa0725220:CDS | 20.0% |
| !!! | CTAAGAAAATCTTATCATTT+TGG | - | chr5_1:24782663-24782682 | Msa0725220:five_prime_UTR | 20.0% |
| ! | AGATTTGAATTTCGGAAATT+GGG | + | chr5_1:24777781-24777800 | None:intergenic | 25.0% |
| ! | AAGATTTGAATTTCGGAAAT+TGG | + | chr5_1:24777782-24777801 | None:intergenic | 25.0% |
| !!! | TTTTCATAAGCTATAATGGA+TGG | + | chr5_1:24778015-24778034 | None:intergenic | 25.0% |
| ! | GATAGCTGATAAACTTATAA+AGG | - | chr5_1:24778100-24778119 | Msa0725220:intron | 25.0% |
| !! | TTTTCATCAGATACTGAATT+GGG | + | chr5_1:24778243-24778262 | None:intergenic | 25.0% |
| !! | TTTTTCATCAGATACTGAAT+TGG | + | chr5_1:24778244-24778263 | None:intergenic | 25.0% |
| !! | CTAATTCAGTAATTTTTCCT+CGG | - | chr5_1:24778336-24778355 | Msa0725220:intron | 25.0% |
| ! | AAAATATCAGGGTCTAATTT+GGG | - | chr5_1:24778363-24778382 | Msa0725220:intron | 25.0% |
| ! | TAGAAAATTGTGAAAGATCA+AGG | - | chr5_1:24778410-24778429 | Msa0725220:intron | 25.0% |
| ! | AACGAAAATTGTATGTTCAT+AGG | - | chr5_1:24778520-24778539 | Msa0725220:intron | 25.0% |
| ! | AAAAATAAGTCAATCCAAAC+GGG | - | chr5_1:24778628-24778647 | Msa0725220:intron | 25.0% |
| ! | AATACATCATAGTTCATATG+TGG | - | chr5_1:24779423-24779442 | Msa0725220:intron | 25.0% |
| !!! | ACCAAGTTATTTTTTTGCAA+AGG | + | chr5_1:24779489-24779508 | None:intergenic | 25.0% |
| ! | TTTGCAAAAAAATAACTTGG+TGG | - | chr5_1:24779488-24779507 | Msa0725220:intron | 25.0% |
| ! | TGAAAATGTGTTTATAATCG+AGG | + | chr5_1:24779695-24779714 | None:intergenic | 25.0% |
| ! | TTTCTATAAGGGAAAATATG+AGG | - | chr5_1:24780078-24780097 | Msa0725220:intron | 25.0% |
| !! | GGAAAATATGAGGAAAATTT+TGG | - | chr5_1:24780088-24780107 | Msa0725220:intron | 25.0% |
| !!! | AGGAAAATTTTGGAAGTTTA+TGG | - | chr5_1:24780098-24780117 | Msa0725220:intron | 25.0% |
| !!! | AATTTAGAAGAAAGAGCATT+AGG | - | chr5_1:24780227-24780246 | Msa0725220:intron | 25.0% |
| ! | GATTTGAATTGGGTATATAT+AGG | + | chr5_1:24780337-24780356 | None:intergenic | 25.0% |
| ! | ACAACCAAGAAAATAAGTAT+TGG | + | chr5_1:24780462-24780481 | None:intergenic | 25.0% |
| ! | ATAGTTAAATTCCTTTGTAG+TGG | + | chr5_1:24780512-24780531 | None:intergenic | 25.0% |
| ! | AGGAATTTAACTATCATGAT+AGG | - | chr5_1:24780518-24780537 | Msa0725220:intron | 25.0% |
| ! | GTTAGAAATTAACTGTAACT+AGG | + | chr5_1:24780675-24780694 | None:intergenic | 25.0% |
| ! | GAAACTACAAATTTCCAAAA+TGG | + | chr5_1:24780789-24780808 | None:intergenic | 25.0% |
| ! | CAAATAAAACAGAACTAGAA+AGG | + | chr5_1:24780865-24780884 | None:intergenic | 25.0% |
| !! | CTGATTGAATTTTCATAGAT+TGG | + | chr5_1:24780902-24780921 | None:intergenic | 25.0% |
| ! | GATACAATTTCATAACCAAT+AGG | + | chr5_1:24781028-24781047 | None:intergenic | 25.0% |
| ! | ATGTACAAAACTTACATGTA+AGG | + | chr5_1:24781169-24781188 | None:intergenic | 25.0% |
| ! | GTATTATCATATCGAAAGAA+TGG | + | chr5_1:24781319-24781338 | None:intergenic | 25.0% |
| !! | AAGGCATTATCAGAAATTAA+GGG | + | chr5_1:24781890-24781909 | None:intergenic | 25.0% |
| !! | TAAGGCATTATCAGAAATTA+AGG | + | chr5_1:24781891-24781910 | None:intergenic | 25.0% |
| ! | CTACATTTAATTGATCTACA+AGG | + | chr5_1:24782086-24782105 | None:intergenic | 25.0% |
| ! | TGTAGATCAATTAAATGTAG+AGG | - | chr5_1:24782086-24782105 | Msa0725220:intron | 25.0% |
| ! | CTAAATTGATATGTCAAAAC+AGG | - | chr5_1:24782252-24782271 | Msa0725220:intron | 25.0% |
| ! | AATAAGTAATATTATGCCTC+TGG | + | chr5_1:24782332-24782351 | None:intergenic | 25.0% |
| TGGGAACAAGATTTGAATTT+CGG | + | chr5_1:24777789-24777808 | None:intergenic | 30.0% | |
| !! | GCTGTTTTCATAAGCTATAA+TGG | + | chr5_1:24778019-24778038 | None:intergenic | 30.0% |
| TTGTTTATCCAAATAGGCAT+AGG | - | chr5_1:24778076-24778095 | Msa0725220:CDS | 30.0% | |
| ATAAGAGTGACTATCCAATA+TGG | - | chr5_1:24778196-24778215 | Msa0725220:CDS | 30.0% | |
| GAAAATATCAGGGTCTAATT+TGG | - | chr5_1:24778362-24778381 | Msa0725220:intron | 30.0% | |
| AAAACTAAGACAATCCAAAC+TGG | + | chr5_1:24778437-24778456 | None:intergenic | 30.0% | |
| GTCATATACCTTCAATGATA+TGG | - | chr5_1:24778856-24778875 | Msa0725220:CDS | 30.0% | |
| ACTACATACCATATCATTGA+AGG | + | chr5_1:24778867-24778886 | None:intergenic | 30.0% | |
| TATGGTATGTAGTAGTGAAA+TGG | - | chr5_1:24778874-24778893 | Msa0725220:intron | 30.0% | |
| ! | GTTGAATGATTTGGAAAGAA+AGG | - | chr5_1:24778966-24778985 | Msa0725220:intron | 30.0% |
| AAGAACAAAGAAATGAGTGT+TGG | - | chr5_1:24779001-24779020 | Msa0725220:intron | 30.0% | |
| !! | TTTTGACACCATTGGTTAAT+AGG | + | chr5_1:24779097-24779116 | None:intergenic | 30.0% |
| ATTTGCTTTCATTTGACAAG+AGG | - | chr5_1:24779179-24779198 | Msa0725220:intron | 30.0% | |
| ! | ACAAGAGGTGTATGAATATA+TGG | - | chr5_1:24779194-24779213 | Msa0725220:intron | 30.0% |
| TTGACCAAGTAATTTCTACT+CGG | - | chr5_1:24779261-24779280 | Msa0725220:CDS | 30.0% | |
| !!! | ATACTGGTTTTGAAAATTCC+TGG | - | chr5_1:24779284-24779303 | Msa0725220:CDS | 30.0% |
| GCCTTTGCAAAAAAATAACT+TGG | - | chr5_1:24779485-24779504 | Msa0725220:intron | 30.0% | |
| CTCTATTCTTATCTCGTATT+AGG | + | chr5_1:24779534-24779553 | None:intergenic | 30.0% | |
| AGGAAAATGCTGACAATAAA+GGG | + | chr5_1:24779788-24779807 | None:intergenic | 30.0% | |
| AAGGAAAATGCTGACAATAA+AGG | + | chr5_1:24779789-24779808 | None:intergenic | 30.0% | |
| !! | ACGTATTCATTTGTTATGTC+TGG | - | chr5_1:24779832-24779851 | Msa0725220:intron | 30.0% |
| ACACCATATTTATAAGTCCA+GGG | + | chr5_1:24780011-24780030 | None:intergenic | 30.0% | |
| TACACCATATTTATAAGTCC+AGG | + | chr5_1:24780012-24780031 | None:intergenic | 30.0% | |
| ATAGAAAACAGCAAGCTTAT+AGG | + | chr5_1:24780065-24780084 | None:intergenic | 30.0% | |
| !!! | TAAGCTTGCTGTTTTCTATA+AGG | - | chr5_1:24780066-24780085 | Msa0725220:intron | 30.0% |
| !!! | AAGCTTGCTGTTTTCTATAA+GGG | - | chr5_1:24780067-24780086 | Msa0725220:intron | 30.0% |
| TAAATTGTCATGGATGGTAT+AGG | + | chr5_1:24780213-24780232 | None:intergenic | 30.0% | |
| TTCTTCTAAATTGTCATGGA+TGG | + | chr5_1:24780219-24780238 | None:intergenic | 30.0% | |
| CTCTTTCTTCTAAATTGTCA+TGG | + | chr5_1:24780223-24780242 | None:intergenic | 30.0% | |
| GAGCATTAGGATAACAAAAA+TGG | - | chr5_1:24780240-24780259 | Msa0725220:intron | 30.0% | |
| ! | GAGAAATTTTCGGAAATCTT+GGG | + | chr5_1:24780424-24780443 | None:intergenic | 30.0% |
| ! | TGAGAAATTTTCGGAAATCT+TGG | + | chr5_1:24780425-24780444 | None:intergenic | 30.0% |
| !! | GACTCCAATACTTATTTTCT+TGG | - | chr5_1:24780455-24780474 | Msa0725220:CDS | 30.0% |
| ! | TTGTTGCTTCATTTGTCTTT+GGG | - | chr5_1:24780481-24780500 | Msa0725220:CDS | 30.0% |
| TTAAGAACACAAATTTGGTC+AGG | + | chr5_1:24780591-24780610 | None:intergenic | 30.0% | |
| ! | TTGGTAAATGGCATTTGTTA+TGG | - | chr5_1:24780717-24780736 | Msa0725220:intron | 30.0% |
| CCTGTAGTAAATACAACAAA+GGG | + | chr5_1:24780755-24780774 | None:intergenic | 30.0% | |
| ! | CCTTTGTTGTATTTACTACA+GGG | - | chr5_1:24780753-24780772 | Msa0725220:intron | 30.0% |
| !!! | CTTTTTTGAGGAAGTTTATG+AGG | - | chr5_1:24780836-24780855 | Msa0725220:intron | 30.0% |
| TCTATGAAAATTCAATCAGC+TGG | - | chr5_1:24780903-24780922 | Msa0725220:intron | 30.0% | |
| ACATGTAAGGTAAATAGCTT+AGG | + | chr5_1:24781156-24781175 | None:intergenic | 30.0% | |
| TTATATTTGCATCATTGGTG+AGG | - | chr5_1:24781362-24781381 | Msa0725220:intron | 30.0% | |
| CTGATGAATGTATCTTAACA+TGG | - | chr5_1:24781431-24781450 | Msa0725220:intron | 30.0% | |
| ! | GAGCAGCTTGAAATATTTTT+GGG | + | chr5_1:24781539-24781558 | None:intergenic | 30.0% |
| ! | AGAGCAGCTTGAAATATTTT+TGG | + | chr5_1:24781540-24781559 | None:intergenic | 30.0% |
| AAAATATTTCAAGCTGCTCT+AGG | - | chr5_1:24781540-24781559 | Msa0725220:intron | 30.0% | |
| AAAAAAAGGAATGCCAAGAA+AGG | + | chr5_1:24781684-24781703 | None:intergenic | 30.0% | |
| ! | TCTTCATATTTTCCTTACGT+TGG | - | chr5_1:24781815-24781834 | Msa0725220:intron | 30.0% |
| ! | ACTCTTTCAAGAGTTTCTTT+TGG | - | chr5_1:24781850-24781869 | Msa0725220:intron | 30.0% |
| AGGCATTATCAGAAATTAAG+GGG | + | chr5_1:24781889-24781908 | None:intergenic | 30.0% | |
| TGAGATAAGCATGGTTATTA+AGG | + | chr5_1:24781909-24781928 | None:intergenic | 30.0% | |
| GTTCTTGCAAACTTTAATTG+TGG | - | chr5_1:24782019-24782038 | Msa0725220:intron | 30.0% | |
| GATCAAAAGGCAGATAAATT+CGG | - | chr5_1:24782135-24782154 | Msa0725220:intron | 30.0% | |
| ATCAAAAGGCAGATAAATTC+GGG | - | chr5_1:24782136-24782155 | Msa0725220:intron | 30.0% | |
| TGATATGTCAAAACAGGTTA+TGG | - | chr5_1:24782258-24782277 | Msa0725220:intron | 30.0% | |
| GATATGTCAAAACAGGTTAT+GGG | - | chr5_1:24782259-24782278 | Msa0725220:intron | 30.0% | |
| ATATGTCAAAACAGGTTATG+GGG | - | chr5_1:24782260-24782279 | Msa0725220:intron | 30.0% | |
| AATATTATGCCTCTGGATTA+AGG | + | chr5_1:24782325-24782344 | None:intergenic | 30.0% | |
| TAGTACATAACGAACGAGAA+TGG | - | chr5_1:24777686-24777705 | Msa0725220:three_prime_UTR | 35.0% | |
| TTCCACTCTCTTCTTCAATA+CGG | - | chr5_1:24777818-24777837 | Msa0725220:intron | 35.0% | |
| TCTTCAATACGGATCAACAA+AGG | - | chr5_1:24777829-24777848 | Msa0725220:intron | 35.0% | |
| ATAAGTATGCTCAACAGGAT+TGG | + | chr5_1:24777944-24777963 | None:intergenic | 35.0% | |
| ! | GGTTGTTCAAAAATTTTGCG+TGG | - | chr5_1:24778217-24778236 | Msa0725220:CDS | 35.0% |
| TCCCTCTGATATAATGAGTT+AGG | - | chr5_1:24778311-24778330 | Msa0725220:intron | 35.0% | |
| CCCTAACTCATTATATCAGA+GGG | + | chr5_1:24778315-24778334 | None:intergenic | 35.0% | |
| CCCTCTGATATAATGAGTTA+GGG | - | chr5_1:24778312-24778331 | Msa0725220:intron | 35.0% | |
| TCCCTAACTCATTATATCAG+AGG | + | chr5_1:24778316-24778335 | None:intergenic | 35.0% | |
| TTCCTCGGTATGAAAATATC+AGG | - | chr5_1:24778351-24778370 | Msa0725220:intron | 35.0% | |
| TCCTCGGTATGAAAATATCA+GGG | - | chr5_1:24778352-24778371 | Msa0725220:intron | 35.0% | |
| !!! | TGGGTTTGTTTTTTGTCAGT+TGG | - | chr5_1:24778382-24778401 | Msa0725220:intron | 35.0% |
| ! | GCTTATAGCATTCTTTTCAC+TGG | + | chr5_1:24778757-24778776 | None:intergenic | 35.0% |
| TTTCCAAATCATTCAACTGC+AGG | + | chr5_1:24778963-24778982 | None:intergenic | 35.0% | |
| !! | AGAAATGAGTGTTGGAAAAC+TGG | - | chr5_1:24779009-24779028 | Msa0725220:intron | 35.0% |
| ! | TTAAGTTGCTGTGATGGAAA+TGG | - | chr5_1:24779041-24779060 | Msa0725220:intron | 35.0% |
| ATGGAAATGGCTCAAAAGTA+AGG | - | chr5_1:24779054-24779073 | Msa0725220:intron | 35.0% | |
| ATGGCTCAAAAGTAAGGTTA+AGG | - | chr5_1:24779060-24779079 | Msa0725220:intron | 35.0% | |
| TGGCTCAAAAGTAAGGTTAA+GGG | - | chr5_1:24779061-24779080 | Msa0725220:intron | 35.0% | |
| CAAAATCTGCTAGATTGACT+TGG | - | chr5_1:24779112-24779131 | Msa0725220:CDS | 35.0% | |
| ! | TCATGTAAGGTTTTTCGCAT+AGG | - | chr5_1:24779137-24779156 | Msa0725220:intron | 35.0% |
| GTATCCGAGTAGAAATTACT+TGG | + | chr5_1:24779268-24779287 | None:intergenic | 35.0% | |
| AGTAATTTCTACTCGGATAC+TGG | - | chr5_1:24779268-24779287 | Msa0725220:CDS | 35.0% | |
| TGCACTGTTATATCACATAC+AGG | - | chr5_1:24779307-24779326 | Msa0725220:intron | 35.0% | |
| GGAAAATGCTGACAATAAAG+GGG | + | chr5_1:24779787-24779806 | None:intergenic | 35.0% | |
| !! | CATTTGTTATGTCTGGTTTC+AGG | - | chr5_1:24779839-24779858 | Msa0725220:intron | 35.0% |
| CTCAATGGTCTGAAAAACTA+CGG | - | chr5_1:24779915-24779934 | Msa0725220:intron | 35.0% | |
| ATTGTATTGAGTTATTGCCC+TGG | - | chr5_1:24779991-24780010 | Msa0725220:intron | 35.0% | |
| TTGCCCTGGACTTATAAATA+TGG | - | chr5_1:24780005-24780024 | Msa0725220:intron | 35.0% | |
| TTATGGTAAGTTGTAGCATG+AGG | - | chr5_1:24780115-24780134 | Msa0725220:intron | 35.0% | |
| TTGGGTATATATAGGAAGAG+AGG | + | chr5_1:24780329-24780348 | None:intergenic | 35.0% | |
| ACAGAGGAGTGATTTGAATT+GGG | + | chr5_1:24780347-24780366 | None:intergenic | 35.0% | |
| AATTCAGAGATGAAACACAG+AGG | + | chr5_1:24780363-24780382 | None:intergenic | 35.0% | |
| TCTGTGTTTCATCTCTGAAT+TGG | - | chr5_1:24780362-24780381 | Msa0725220:intron | 35.0% | |
| CTGTGTTTCATCTCTGAATT+GGG | - | chr5_1:24780363-24780382 | Msa0725220:intron | 35.0% | |
| ! | GTTGTTGCTTCATTTGTCTT+TGG | - | chr5_1:24780480-24780499 | Msa0725220:CDS | 35.0% |
| ! | CCCTTTGTTGTATTTACTAC+AGG | - | chr5_1:24780752-24780771 | Msa0725220:intron | 35.0% |
| CCCTGTAGTAAATACAACAA+AGG | + | chr5_1:24780756-24780775 | None:intergenic | 35.0% | |
| TTGTATTTACTACAGGGTGA+TGG | - | chr5_1:24780759-24780778 | Msa0725220:intron | 35.0% | |
| TGTATTTACTACAGGGTGAT+GGG | - | chr5_1:24780760-24780779 | Msa0725220:intron | 35.0% | |
| TTGTATCAGCACTATGCAAA+AGG | - | chr5_1:24781041-24781060 | Msa0725220:intron | 35.0% | |
| AAACAGTGACACAGTTAAGA+TGG | - | chr5_1:24781218-24781237 | Msa0725220:intron | 35.0% | |
| GGGCATTATATTTGCATCAT+TGG | - | chr5_1:24781357-24781376 | Msa0725220:intron | 35.0% | |
| ! | AGACTTTTCTGCAAAGTAAG+CGG | + | chr5_1:24781413-24781432 | None:intergenic | 35.0% |
| TGCAGTCATTATATCATCAG+AGG | - | chr5_1:24781494-24781513 | Msa0725220:intron | 35.0% | |
| GTCATTATATCATCAGAGGT+TGG | - | chr5_1:24781498-24781517 | Msa0725220:intron | 35.0% | |
| !!! | GCTTGAAATATTTTTGGGTC+TGG | + | chr5_1:24781534-24781553 | None:intergenic | 35.0% |
| !! | ATATGCTTTGTTTCTTCCTC+AGG | - | chr5_1:24781617-24781636 | Msa0725220:intron | 35.0% |
| TCACATATTACCTCCTTTCT+TGG | - | chr5_1:24781668-24781687 | Msa0725220:intron | 35.0% | |
| TATATATGCTAAGGAATGCC+AGG | + | chr5_1:24781739-24781758 | None:intergenic | 35.0% | |
| !!! | AAACGTGTCTTGTTTTCTTG+TGG | - | chr5_1:24781771-24781790 | Msa0725220:intron | 35.0% |
| GAGACTTAAATACCAACGTA+AGG | + | chr5_1:24781830-24781849 | None:intergenic | 35.0% | |
| AGACATGAATTAGCGGTTAT+TGG | - | chr5_1:24781971-24781990 | Msa0725220:intron | 35.0% | |
| GATCAATTAAATGTAGAGGC+TGG | - | chr5_1:24782090-24782109 | Msa0725220:intron | 35.0% | |
| TCAAAAGGCAGATAAATTCG+GGG | - | chr5_1:24782137-24782156 | Msa0725220:intron | 35.0% | |
| TATGTCAAAACAGGTTATGG+GGG | - | chr5_1:24782261-24782280 | Msa0725220:intron | 35.0% | |
| AAAATGAAAGCAATCACCAG+AGG | - | chr5_1:24782412-24782431 | Msa0725220:CDS | 35.0% | |
| ACAGAGAAGTCAGAATCAAA+TGG | - | chr5_1:24782536-24782555 | Msa0725220:CDS | 35.0% | |
| CAGAGAAGTCAGAATCAAAT+GGG | - | chr5_1:24782537-24782556 | Msa0725220:CDS | 35.0% | |
| AGAGAAGTCAGAATCAAATG+GGG | - | chr5_1:24782538-24782557 | Msa0725220:CDS | 35.0% | |
| ! | TGGAGTATTCGTGTATTACT+AGG | - | chr5_1:24782683-24782702 | Msa0725220:five_prime_UTR | 35.0% |
| TAACGAACGAGAATGGCAAA+TGG | - | chr5_1:24777693-24777712 | Msa0725220:three_prime_UTR | 40.0% | |
| AACGAACGAGAATGGCAAAT+GGG | - | chr5_1:24777694-24777713 | Msa0725220:three_prime_UTR | 40.0% | |
| GAGAGTGGAAGTGATGAATT+GGG | + | chr5_1:24777808-24777827 | None:intergenic | 40.0% | |
| AGAGAGTGGAAGTGATGAAT+TGG | + | chr5_1:24777809-24777828 | None:intergenic | 40.0% | |
| ATCCGTATTGAAGAAGAGAG+TGG | + | chr5_1:24777823-24777842 | None:intergenic | 40.0% | |
| GGTATATGACGCATTACTGT+TGG | - | chr5_1:24777891-24777910 | Msa0725220:three_prime_UTR | 40.0% | |
| GAGCATACTTATGCCACTAT+TGG | - | chr5_1:24777952-24777971 | Msa0725220:three_prime_UTR | 40.0% | |
| GCCACTATTGGATCCAAATA+CGG | - | chr5_1:24777964-24777983 | Msa0725220:three_prime_UTR | 40.0% | |
| ACCGTATTTGGATCCAATAG+TGG | + | chr5_1:24777968-24777987 | None:intergenic | 40.0% | |
| CGAGAGTAACAAACCGTATT+TGG | + | chr5_1:24777980-24777999 | None:intergenic | 40.0% | |
| AGCTATCACCTATGCCTATT+TGG | + | chr5_1:24778087-24778106 | None:intergenic | 40.0% | |
| ! | ACCCTGATATTTTCATACCG+AGG | + | chr5_1:24778356-24778375 | None:intergenic | 40.0% |
| TGAAAGATCAAGGACCAGTT+TGG | - | chr5_1:24778420-24778439 | Msa0725220:intron | 40.0% | |
| ! | GAACATTTGGCTCAGTTTGA+TGG | - | chr5_1:24778933-24778952 | Msa0725220:intron | 40.0% |
| TTGCCTGCAGTTGAATGATT+TGG | - | chr5_1:24778957-24778976 | Msa0725220:intron | 40.0% | |
| ! | AGGAGATTAAGTTGCTGTGA+TGG | - | chr5_1:24779035-24779054 | Msa0725220:intron | 40.0% |
| GTAAGGTTAAGGGATTCCTT+TGG | - | chr5_1:24779071-24779090 | Msa0725220:CDS | 40.0% | |
| TCCTTTGGCCTATTAACCAA+TGG | - | chr5_1:24779086-24779105 | Msa0725220:CDS | 40.0% | |
| ! | ACCATTGGTTAATAGGCCAA+AGG | + | chr5_1:24779090-24779109 | None:intergenic | 40.0% |
| !! | CTAGCAGATTTTGACACCAT+TGG | + | chr5_1:24779105-24779124 | None:intergenic | 40.0% |
| !! | GATTGACTTGGTCTCATGTA+AGG | - | chr5_1:24779124-24779143 | Msa0725220:intron | 40.0% |
| ATGTGATATAACAGTGCACC+AGG | + | chr5_1:24779305-24779324 | None:intergenic | 40.0% | |
| !! | TTTTGAGTGAATCAAGCACC+TGG | - | chr5_1:24779335-24779354 | Msa0725220:intron | 40.0% |
| ! | TGACTTGTGGTGCATTAATG+TGG | - | chr5_1:24779398-24779417 | Msa0725220:intron | 40.0% |
| GACTTGTGGTGCATTAATGT+GGG | - | chr5_1:24779399-24779418 | Msa0725220:intron | 40.0% | |
| !! | TTAGATAAAACCGGCTTGCA+AGG | - | chr5_1:24779658-24779677 | Msa0725220:intron | 40.0% |
| AATCCAGCTGAGATAAAGCA+GGG | - | chr5_1:24779872-24779891 | Msa0725220:intron | 40.0% | |
| GTCTGAAAAACTACGGTATC+AGG | - | chr5_1:24779922-24779941 | Msa0725220:intron | 40.0% | |
| ! | AGCTCTGACAAAAAGTGATG+AGG | + | chr5_1:24779970-24779989 | None:intergenic | 40.0% |
| GTCATGGATGGTATAGGTTA+AGG | + | chr5_1:24780207-24780226 | None:intergenic | 40.0% | |
| AGAGAGGAGTGAAAAGAAGA+GGG | + | chr5_1:24780313-24780332 | None:intergenic | 40.0% | |
| AAGAGAGGAGTGAAAAGAAG+AGG | + | chr5_1:24780314-24780333 | None:intergenic | 40.0% | |
| CACAGAGGAGTGATTTGAAT+TGG | + | chr5_1:24780348-24780367 | None:intergenic | 40.0% | |
| GAAATCTTGGGAGTTAGGAA+AGG | + | chr5_1:24780412-24780431 | None:intergenic | 40.0% | |
| TTTCGGAAATCTTGGGAGTT+AGG | + | chr5_1:24780417-24780436 | None:intergenic | 40.0% | |
| !! | TTTGTAGTTTCTGAAGCCAC+CGG | - | chr5_1:24780798-24780817 | Msa0725220:intron | 40.0% |
| ACTATGCAAAAGGTGATGCA+TGG | - | chr5_1:24781051-24781070 | Msa0725220:intron | 40.0% | |
| ATTGTGTCAAAAGCTCCGTT+GGG | + | chr5_1:24781083-24781102 | None:intergenic | 40.0% | |
| TGACACAATGACTCTTCTCA+AGG | - | chr5_1:24781094-24781113 | Msa0725220:intron | 40.0% | |
| CACTGTTTGTCATGTTAGCA+AGG | + | chr5_1:24781206-24781225 | None:intergenic | 40.0% | |
| TCGCTTAAGGAAGCTATTGA+AGG | - | chr5_1:24781263-24781282 | Msa0725220:intron | 40.0% | |
| ! | CTTTGTTTCTTCCTCAGGAA+CGG | - | chr5_1:24781622-24781641 | Msa0725220:intron | 40.0% |
| AAAAGGAATGCCAAGAAAGG+AGG | + | chr5_1:24781681-24781700 | None:intergenic | 40.0% | |
| ACAGCTTAGTGAGATAAGCA+TGG | + | chr5_1:24781918-24781937 | None:intergenic | 40.0% | |
| ATGGCTCAGACATGAATTAG+CGG | - | chr5_1:24781964-24781983 | Msa0725220:intron | 40.0% | |
| TTGATCATCTCCTATGTGCA+AGG | + | chr5_1:24782121-24782140 | None:intergenic | 40.0% | |
| GCACATAGGAGATGATCAAA+AGG | - | chr5_1:24782122-24782141 | Msa0725220:intron | 40.0% | |
| GAGAAGTCAGAATCAAATGG+GGG | - | chr5_1:24782539-24782558 | Msa0725220:CDS | 40.0% | |
| !! | GGGTTTCAGAGCTTTGAAGA+AGG | + | chr5_1:24777761-24777780 | None:intergenic | 45.0% |
| TACGGATCAACAAAGGAGCA+AGG | - | chr5_1:24777836-24777855 | Msa0725220:intron | 45.0% | |
| !! | AGGATTGGCCAATTGCAACA+GGG | + | chr5_1:24777929-24777948 | None:intergenic | 45.0% |
| GTGGCATAAGTATGCTCAAC+AGG | + | chr5_1:24777949-24777968 | None:intergenic | 45.0% | |
| ATGTAGTAGTGAAATGGCCG+AGG | - | chr5_1:24778880-24778899 | Msa0725220:intron | 45.0% | |
| TGTAGTAGTGAAATGGCCGA+GGG | - | chr5_1:24778881-24778900 | Msa0725220:intron | 45.0% | |
| TGCAATGTAGAGACAACCCT+CGG | + | chr5_1:24778900-24778919 | None:intergenic | 45.0% | |
| GGTTGTCTCTACATTGCACA+GGG | - | chr5_1:24778902-24778921 | Msa0725220:intron | 45.0% | |
| GTTGTCTCTACATTGCACAG+GGG | - | chr5_1:24778903-24778922 | Msa0725220:intron | 45.0% | |
| !! | GAGTGTTGGAAAACTGGTTG+AGG | - | chr5_1:24779015-24779034 | Msa0725220:intron | 45.0% |
| AATCAAGCACCTGGAGTTTG+CGG | - | chr5_1:24779344-24779363 | Msa0725220:intron | 45.0% | |
| GTTGCTTGTGTGATGACTTG+TGG | - | chr5_1:24779385-24779404 | Msa0725220:intron | 45.0% | |
| CATAGTTCATATGTGGCTGC+TGG | - | chr5_1:24779430-24779449 | Msa0725220:intron | 45.0% | |
| TGGTTTGACCTTGCCAAACA+GGG | - | chr5_1:24779508-24779527 | Msa0725220:intron | 45.0% | |
| ATCTCGTATTAGGCCCTGTT+TGG | + | chr5_1:24779524-24779543 | None:intergenic | 45.0% | |
| ATGCTGACAATAAAGGGGTG+TGG | + | chr5_1:24779782-24779801 | None:intergenic | 45.0% | |
| GAATCCAGCTGAGATAAAGC+AGG | - | chr5_1:24779871-24779890 | Msa0725220:intron | 45.0% | |
| ATCCAGCTGAGATAAAGCAG+GGG | - | chr5_1:24779873-24779892 | Msa0725220:intron | 45.0% | |
| !!! | AGAGAGCGTTTTCTGCTCAA+TGG | - | chr5_1:24779900-24779919 | Msa0725220:intron | 45.0% |
| GGTAAGTTGTAGCATGAGGA+AGG | - | chr5_1:24780119-24780138 | Msa0725220:intron | 45.0% | |
| AAGAGGGCAAGCATGATTTG+TGG | + | chr5_1:24780297-24780316 | None:intergenic | 45.0% | |
| TTAGGAAAGGCTTGAGGCAA+AGG | + | chr5_1:24780399-24780418 | None:intergenic | 45.0% | |
| TTTGGGCTTCTCCACTACAA+AGG | - | chr5_1:24780498-24780517 | Msa0725220:intron | 45.0% | |
| !! | ATTTACTACAGGGTGATGGG+AGG | - | chr5_1:24780763-24780782 | Msa0725220:intron | 45.0% |
| !!! | CGGAGACGAAGACTTTTTTG+AGG | - | chr5_1:24780824-24780843 | Msa0725220:intron | 45.0% |
| CATTGTGTCAAAAGCTCCGT+TGG | + | chr5_1:24781084-24781103 | None:intergenic | 45.0% | |
| ATGACTCTTCTCAAGGATGC+TGG | - | chr5_1:24781101-24781120 | Msa0725220:intron | 45.0% | |
| CCTTAAGCGAGAGTCGAAAT+TGG | + | chr5_1:24781253-24781272 | None:intergenic | 45.0% | |
| CCAATTTCGACTCTCGCTTA+AGG | - | chr5_1:24781250-24781269 | Msa0725220:intron | 45.0% | |
| CTAAGGAATGCCAGGAAGAA+AGG | + | chr5_1:24781731-24781750 | None:intergenic | 45.0% | |
| ATGACGTAGGGATAGATTGC+TGG | - | chr5_1:24782163-24782182 | Msa0725220:intron | 45.0% | |
| AATCCGCATCCTTAATCCAG+AGG | - | chr5_1:24782313-24782332 | Msa0725220:intron | 45.0% | |
| ATGCCTCTGGATTAAGGATG+CGG | + | chr5_1:24782319-24782338 | None:intergenic | 45.0% | |
| GCAGATAACATAGACTCCTC+TGG | + | chr5_1:24782431-24782450 | None:intergenic | 45.0% | |
| ! | TCACTCGTGAGTTGAATGTG+TGG | + | chr5_1:24782503-24782522 | None:intergenic | 45.0% |
| CAGAATCAAATGGGGGAACT+TGG | - | chr5_1:24782546-24782565 | Msa0725220:CDS | 45.0% | |
| ! | AAAGGAGCAAGGTGCTCTCA+TGG | - | chr5_1:24777847-24777866 | Msa0725220:intron | 50.0% |
| AGGTGCTCTCATGGTCATAG+CGG | - | chr5_1:24777856-24777875 | Msa0725220:intron | 50.0% | |
| GACGCATTACTGTTGGATGC+TGG | - | chr5_1:24777898-24777917 | Msa0725220:three_prime_UTR | 50.0% | |
| GCATTACTGTTGGATGCTGG+AGG | - | chr5_1:24777901-24777920 | Msa0725220:three_prime_UTR | 50.0% | |
| !! | CAGGATTGGCCAATTGCAAC+AGG | + | chr5_1:24777930-24777949 | None:intergenic | 50.0% |
| GACACAATTTGCGACCCGTT+TGG | + | chr5_1:24778645-24778664 | None:intergenic | 50.0% | |
| !! | TCATGAGTGAAGCACCGAGA+GGG | - | chr5_1:24778777-24778796 | Msa0725220:intron | 50.0% |
| GGGTTGTCTCTACATTGCAC+AGG | - | chr5_1:24778901-24778920 | Msa0725220:intron | 50.0% | |
| TACATTGCACAGGGGCTGTT+GGG | - | chr5_1:24778911-24778930 | Msa0725220:intron | 50.0% | |
| TCTTGCGAGATCTGATCTGC+TGG | - | chr5_1:24779221-24779240 | Msa0725220:intron | 50.0% | |
| ATCAAGCACCTGGAGTTTGC+GGG | - | chr5_1:24779345-24779364 | Msa0725220:intron | 50.0% | |
| TTCATATGTGGCTGCTGGTG+TGG | - | chr5_1:24779435-24779454 | Msa0725220:intron | 50.0% | |
| GTGGTTTGACCTTGCCAAAC+AGG | - | chr5_1:24779507-24779526 | Msa0725220:intron | 50.0% | |
| GTATTAGGCCCTGTTTGGCA+AGG | + | chr5_1:24779519-24779538 | None:intergenic | 50.0% | |
| AACCCCTGCTTTATCTCAGC+TGG | + | chr5_1:24779878-24779897 | None:intergenic | 50.0% | |
| CAACTCCCAGTGTGTGAAGT+AGG | - | chr5_1:24780170-24780189 | Msa0725220:intron | 50.0% | |
| CTCCTCCTACTTCACACACT+GGG | + | chr5_1:24780178-24780197 | None:intergenic | 50.0% | |
| ACTCCTCCTACTTCACACAC+TGG | + | chr5_1:24780179-24780198 | None:intergenic | 50.0% | |
| TGGGAGTTAGGAAAGGCTTG+AGG | + | chr5_1:24780405-24780424 | None:intergenic | 50.0% | |
| AAAGTCTTCGTCTCCGCAAC+CGG | + | chr5_1:24780820-24780839 | None:intergenic | 50.0% | |
| GATGCATGGCATCTTCCCAA+CGG | - | chr5_1:24781065-24781084 | Msa0725220:intron | 50.0% | |
| ACTCTTCTCAAGGATGCTGG+AGG | - | chr5_1:24781104-24781123 | Msa0725220:intron | 50.0% | |
| TCACAGCTTGCCTTTCTTCC+TGG | - | chr5_1:24781718-24781737 | Msa0725220:intron | 50.0% | |
| TGCTCTCATGGTCATAGCGG+TGG | - | chr5_1:24777859-24777878 | Msa0725220:intron | 55.0% | |
| GCTCTCATGGTCATAGCGGT+GGG | - | chr5_1:24777860-24777879 | Msa0725220:intron | 55.0% | |
| ATGGTCATAGCGGTGGGACT+GGG | - | chr5_1:24777866-24777885 | Msa0725220:three_prime_UTR | 55.0% | |
| !! | TGGAGGCACCCTGTTGCAAT+TGG | - | chr5_1:24777918-24777937 | Msa0725220:three_prime_UTR | 55.0% |
| !! | CTCATGAGTGAAGCACCGAG+AGG | - | chr5_1:24778776-24778795 | Msa0725220:intron | 55.0% |
| !! | CATGAGTGAAGCACCGAGAG+GGG | - | chr5_1:24778778-24778797 | Msa0725220:intron | 55.0% |
| CTACATTGCACAGGGGCTGT+TGG | - | chr5_1:24778910-24778929 | Msa0725220:intron | 55.0% | |
| CAGGGGCTGTTGGGAACATT+TGG | - | chr5_1:24778920-24778939 | Msa0725220:intron | 55.0% | |
| GAAATGCACCCGCAAACTCC+AGG | + | chr5_1:24779356-24779375 | None:intergenic | 55.0% | |
| GAGTCTCTCACCTTGCAAGC+CGG | + | chr5_1:24779671-24779690 | None:intergenic | 55.0% | |
| CTCCCAGTGTGTGAAGTAGG+AGG | - | chr5_1:24780173-24780192 | Msa0725220:intron | 55.0% | |
| !!! | AGGGTGATGGGAGGCCATTT+TGG | - | chr5_1:24780772-24780791 | Msa0725220:intron | 55.0% |
| !! | GTTTCTGAAGCCACCGGTTG+CGG | - | chr5_1:24780804-24780823 | Msa0725220:intron | 55.0% |
| GGTTCAACACTCCGTTCCTG+AGG | + | chr5_1:24781636-24781655 | None:intergenic | 55.0% | |
| GCTGGCAAAGCCTTGCACAT+AGG | - | chr5_1:24782108-24782127 | Msa0725220:intron | 55.0% | |
| CATGGTCATAGCGGTGGGAC+TGG | - | chr5_1:24777865-24777884 | Msa0725220:three_prime_UTR | 60.0% | |
| TCATAGCGGTGGGACTGGGA+GGG | - | chr5_1:24777870-24777889 | Msa0725220:three_prime_UTR | 60.0% | |
| CAGCCACACAGTTCCCCTCT+CGG | + | chr5_1:24778794-24778813 | None:intergenic | 60.0% | |
| GAGAGGGGAACTGTGTGGCT+GGG | - | chr5_1:24778793-24778812 | Msa0725220:intron | 60.0% | |
| GTCATAGCGGTGGGACTGGG+AGG | - | chr5_1:24777869-24777888 | Msa0725220:three_prime_UTR | 65.0% | |
| GCACCGAGAGGGGAACTGTG+TGG | - | chr5_1:24778788-24778807 | Msa0725220:intron | 65.0% | |
| CGAGAGGGGAACTGTGTGGC+TGG | - | chr5_1:24778792-24778811 | Msa0725220:intron | 65.0% | |
| GGGAACTGTGTGGCTGGGTG+TGG | - | chr5_1:24778798-24778817 | Msa0725220:intron | 65.0% | |
| GTCTTCGTCTCCGCAACCGG+TGG | + | chr5_1:24780817-24780836 | None:intergenic | 65.0% | |
| CTGTGTGGCTGGGTGTGGCG+TGG | - | chr5_1:24778803-24778822 | Msa0725220:intron | 70.0% | |
| TGTGGCTGGGTGTGGCGTGG+TGG | - | chr5_1:24778806-24778825 | Msa0725220:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 24777662 | 24782712 | 24777662 | ID=Msa0725220;Name=Msa0725220 |
| chr5_1 | mRNA | 24777662 | 24782712 | 24777662 | ID=Msa0725220-mRNA-1;Parent=Msa0725220;Name=Msa0725220-mRNA-1;_AED=0.15;_eAED=0.15;_QI=50|1|1|1|0.87|0.77|9|329|274 |
| chr5_1 | exon | 24777662 | 24777819 | 24777662 | ID=Msa0725220-mRNA-1:exon:9022;Parent=Msa0725220-mRNA-1 |
| chr5_1 | exon | 24777863 | 24778100 | 24777863 | ID=Msa0725220-mRNA-1:exon:9021;Parent=Msa0725220-mRNA-1 |
| chr5_1 | exon | 24778190 | 24778283 | 24778190 | ID=Msa0725220-mRNA-1:exon:9020;Parent=Msa0725220-mRNA-1 |
| chr5_1 | exon | 24778813 | 24778886 | 24778813 | ID=Msa0725220-mRNA-1:exon:9019;Parent=Msa0725220-mRNA-1 |
| chr5_1 | exon | 24779070 | 24779142 | 24779070 | ID=Msa0725220-mRNA-1:exon:9018;Parent=Msa0725220-mRNA-1 |
| chr5_1 | exon | 24779249 | 24779324 | 24779249 | ID=Msa0725220-mRNA-1:exon:9017;Parent=Msa0725220-mRNA-1 |
| chr5_1 | exon | 24779517 | 24779600 | 24779517 | ID=Msa0725220-mRNA-1:exon:9016;Parent=Msa0725220-mRNA-1 |
| chr5_1 | exon | 24780431 | 24780513 | 24780431 | ID=Msa0725220-mRNA-1:exon:9015;Parent=Msa0725220-mRNA-1 |
| chr5_1 | exon | 24782389 | 24782712 | 24782389 | ID=Msa0725220-mRNA-1:exon:9014;Parent=Msa0725220-mRNA-1 |
| chr5_1 | five_prime_UTR | 24782663 | 24782712 | 24782663 | ID=Msa0725220-mRNA-1:five_prime_utr;Parent=Msa0725220-mRNA-1 |
| chr5_1 | CDS | 24782389 | 24782662 | 24782389 | ID=Msa0725220-mRNA-1:cds;Parent=Msa0725220-mRNA-1 |
| chr5_1 | CDS | 24780431 | 24780513 | 24780431 | ID=Msa0725220-mRNA-1:cds;Parent=Msa0725220-mRNA-1 |
| chr5_1 | CDS | 24779517 | 24779600 | 24779517 | ID=Msa0725220-mRNA-1:cds;Parent=Msa0725220-mRNA-1 |
| chr5_1 | CDS | 24779249 | 24779324 | 24779249 | ID=Msa0725220-mRNA-1:cds;Parent=Msa0725220-mRNA-1 |
| chr5_1 | CDS | 24779070 | 24779142 | 24779070 | ID=Msa0725220-mRNA-1:cds;Parent=Msa0725220-mRNA-1 |
| chr5_1 | CDS | 24778813 | 24778886 | 24778813 | ID=Msa0725220-mRNA-1:cds;Parent=Msa0725220-mRNA-1 |
| chr5_1 | CDS | 24778190 | 24778283 | 24778190 | ID=Msa0725220-mRNA-1:cds;Parent=Msa0725220-mRNA-1 |
| chr5_1 | CDS | 24778034 | 24778100 | 24778034 | ID=Msa0725220-mRNA-1:cds;Parent=Msa0725220-mRNA-1 |
| chr5_1 | three_prime_UTR | 24777863 | 24778033 | 24777863 | ID=Msa0725220-mRNA-1:three_prime_utr;Parent=Msa0725220-mRNA-1 |
| chr5_1 | three_prime_UTR | 24777662 | 24777819 | 24777662 | ID=Msa0725220-mRNA-1:three_prime_utr;Parent=Msa0725220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
