Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466820 | XP_024626810.1 | 98.052 | 308 | 6 | 0 | 1 | 308 | 130 | 437 | 0.0 | 618 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466820 | sp|O80970|NPY2_ARATH | 62.179 | 312 | 111 | 3 | 1 | 308 | 129 | 437 | 1.34e-129 | 385 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466820 | G7IE60 | 98.052 | 308 | 6 | 0 | 1 | 308 | 130 | 437 | 0.0 | 618 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0041790 | Msa1466820 | 0.845947 | 2.954828e-59 | -8.615850e-47 |
| Msa0100890 | Msa1466820 | 0.806738 | 7.109311e-50 | -8.615850e-47 |
| Msa0192050 | Msa1466820 | 0.805487 | 1.303505e-49 | -8.615850e-47 |
| Msa1315500 | Msa1466820 | 0.808072 | 3.706189e-50 | -8.615850e-47 |
| Msa0433630 | Msa1466820 | 0.809918 | 1.492186e-50 | -8.615850e-47 |
| Msa1000780 | Msa1466820 | 0.813030 | 3.146363e-51 | -8.615850e-47 |
| Msa0521510 | Msa1466820 | 0.815549 | 8.733901e-52 | -8.615850e-47 |
| Msa0521530 | Msa1466820 | 0.802663 | 5.041769e-49 | -8.615850e-47 |
| Msa0926310 | Msa1466820 | 0.807549 | 4.786782e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466820 | MtrunA17_Chr1g0207461 | 98.052 | 308 | 6 | 0 | 1 | 308 | 130 | 437 | 0.0 | 618 |
| Msa1466820 | MtrunA17_Chr5g0401341 | 60.323 | 310 | 116 | 4 | 1 | 308 | 128 | 432 | 3.89e-121 | 361 |
| Msa1466820 | MtrunA17_Chr1g0150191 | 46.154 | 312 | 161 | 5 | 1 | 308 | 129 | 437 | 1.32e-83 | 264 |
| Msa1466820 | MtrunA17_Chr4g0076521 | 36.335 | 322 | 168 | 6 | 1 | 309 | 128 | 425 | 2.72e-56 | 192 |
| Msa1466820 | MtrunA17_Chr5g0412591 | 37.423 | 326 | 169 | 4 | 17 | 309 | 116 | 439 | 3.10e-56 | 191 |
| Msa1466820 | MtrunA17_Chr8g0367891 | 40.244 | 328 | 155 | 5 | 1 | 309 | 129 | 434 | 3.53e-56 | 191 |
| Msa1466820 | MtrunA17_Chr2g0303541 | 35.583 | 326 | 182 | 6 | 5 | 308 | 133 | 452 | 9.56e-51 | 177 |
| Msa1466820 | MtrunA17_Chr4g0050021 | 33.051 | 354 | 192 | 7 | 1 | 313 | 146 | 495 | 9.66e-51 | 177 |
| Msa1466820 | MtrunA17_Chr2g0279481 | 32.873 | 362 | 189 | 9 | 1 | 313 | 146 | 502 | 5.87e-50 | 176 |
| Msa1466820 | MtrunA17_Chr2g0290741 | 34.268 | 321 | 166 | 6 | 1 | 309 | 128 | 415 | 2.80e-49 | 172 |
| Msa1466820 | MtrunA17_Chr2g0285511 | 32.716 | 324 | 199 | 6 | 5 | 313 | 133 | 452 | 2.22e-46 | 165 |
| Msa1466820 | MtrunA17_Chr4g0010091 | 36.184 | 304 | 173 | 8 | 15 | 309 | 150 | 441 | 2.10e-45 | 162 |
| Msa1466820 | MtrunA17_Chr2g0320691 | 30.395 | 329 | 194 | 6 | 4 | 309 | 130 | 446 | 6.12e-45 | 161 |
| Msa1466820 | MtrunA17_Chr8g0382231 | 30.259 | 347 | 164 | 9 | 1 | 309 | 155 | 461 | 1.68e-44 | 160 |
| Msa1466820 | MtrunA17_Chr5g0401451 | 35.625 | 320 | 167 | 12 | 6 | 309 | 147 | 443 | 8.69e-43 | 155 |
| Msa1466820 | MtrunA17_Chr1g0195911 | 33.951 | 324 | 182 | 7 | 1 | 309 | 138 | 444 | 5.97e-41 | 150 |
| Msa1466820 | MtrunA17_Chr1g0181181 | 30.154 | 325 | 181 | 8 | 5 | 310 | 133 | 430 | 1.85e-40 | 148 |
| Msa1466820 | MtrunA17_Chr4g0053841 | 33.758 | 314 | 188 | 7 | 1 | 309 | 117 | 415 | 2.21e-40 | 148 |
| Msa1466820 | MtrunA17_Chr7g0268781 | 35.604 | 323 | 182 | 8 | 1 | 309 | 138 | 448 | 3.09e-40 | 148 |
| Msa1466820 | MtrunA17_Chr8g0374011 | 32.530 | 332 | 192 | 11 | 1 | 309 | 142 | 464 | 3.31e-38 | 143 |
| Msa1466820 | MtrunA17_Chr2g0332281 | 37.395 | 238 | 119 | 5 | 84 | 309 | 24 | 243 | 2.43e-37 | 137 |
| Msa1466820 | MtrunA17_Chr1g0199631 | 30.915 | 317 | 201 | 9 | 5 | 308 | 96 | 407 | 1.27e-35 | 135 |
| Msa1466820 | MtrunA17_Chr1g0191711 | 28.931 | 318 | 165 | 8 | 1 | 308 | 164 | 430 | 1.65e-35 | 134 |
| Msa1466820 | MtrunA17_Chr4g0003891 | 35.124 | 242 | 129 | 5 | 78 | 309 | 40 | 263 | 2.51e-34 | 130 |
| Msa1466820 | MtrunA17_Chr7g0245201 | 32.622 | 328 | 186 | 9 | 1 | 313 | 164 | 471 | 8.17e-34 | 130 |
| Msa1466820 | MtrunA17_Chr3g0108331 | 31.677 | 322 | 170 | 10 | 1 | 309 | 126 | 410 | 1.12e-32 | 127 |
| Msa1466820 | MtrunA17_Chr5g0432861 | 28.571 | 329 | 180 | 7 | 1 | 309 | 127 | 420 | 1.98e-31 | 123 |
| Msa1466820 | MtrunA17_Chr2g0280541 | 28.369 | 282 | 171 | 10 | 30 | 310 | 72 | 323 | 7.74e-21 | 92.4 |
| Msa1466820 | MtrunA17_Chr4g0037661 | 29.694 | 229 | 140 | 7 | 81 | 308 | 207 | 415 | 2.16e-19 | 88.6 |
| Msa1466820 | MtrunA17_Chr4g0023801 | 25.325 | 308 | 196 | 9 | 6 | 309 | 115 | 392 | 3.68e-18 | 84.7 |
| Msa1466820 | MtrunA17_Chr1g0163311 | 27.311 | 238 | 141 | 8 | 74 | 308 | 200 | 408 | 1.02e-15 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466820 | AT2G14820.2 | 62.179 | 312 | 111 | 3 | 1 | 308 | 129 | 437 | 1.36e-130 | 385 |
| Msa1466820 | AT2G14820.1 | 62.179 | 312 | 111 | 3 | 1 | 308 | 129 | 437 | 1.36e-130 | 385 |
| Msa1466820 | AT2G23050.2 | 48.701 | 308 | 116 | 6 | 1 | 308 | 18 | 283 | 1.01e-88 | 270 |
| Msa1466820 | AT2G23050.1 | 48.701 | 308 | 116 | 6 | 1 | 308 | 134 | 399 | 3.21e-87 | 270 |
| Msa1466820 | AT5G67440.2 | 47.771 | 314 | 138 | 6 | 1 | 308 | 95 | 388 | 7.06e-86 | 268 |
| Msa1466820 | AT5G67440.3 | 47.771 | 314 | 138 | 6 | 1 | 308 | 132 | 425 | 2.16e-85 | 268 |
| Msa1466820 | AT5G67440.1 | 47.771 | 314 | 138 | 6 | 1 | 308 | 132 | 425 | 2.16e-85 | 268 |
| Msa1466820 | AT4G37590.1 | 45.659 | 311 | 130 | 7 | 1 | 308 | 140 | 414 | 1.68e-81 | 258 |
| Msa1466820 | AT4G31820.2 | 42.444 | 311 | 154 | 6 | 1 | 308 | 76 | 364 | 4.00e-68 | 221 |
| Msa1466820 | AT4G31820.1 | 42.444 | 311 | 154 | 6 | 1 | 308 | 129 | 417 | 1.64e-67 | 221 |
| Msa1466820 | AT5G47800.3 | 35.625 | 320 | 174 | 7 | 1 | 309 | 128 | 426 | 2.58e-57 | 194 |
| Msa1466820 | AT5G47800.1 | 35.625 | 320 | 174 | 7 | 1 | 309 | 128 | 426 | 2.58e-57 | 194 |
| Msa1466820 | AT5G47800.4 | 35.625 | 320 | 174 | 7 | 1 | 309 | 128 | 426 | 2.58e-57 | 194 |
| Msa1466820 | AT5G47800.2 | 35.625 | 320 | 174 | 7 | 1 | 309 | 241 | 539 | 1.64e-56 | 194 |
| Msa1466820 | AT1G67900.5 | 38.304 | 342 | 171 | 6 | 1 | 309 | 125 | 459 | 5.37e-55 | 189 |
| Msa1466820 | AT1G67900.1 | 38.304 | 342 | 171 | 6 | 1 | 309 | 125 | 459 | 5.37e-55 | 189 |
| Msa1466820 | AT1G67900.3 | 38.304 | 342 | 171 | 6 | 1 | 309 | 125 | 459 | 5.37e-55 | 189 |
| Msa1466820 | AT1G67900.6 | 38.304 | 342 | 171 | 6 | 1 | 309 | 125 | 459 | 5.37e-55 | 189 |
| Msa1466820 | AT1G67900.2 | 38.304 | 342 | 171 | 6 | 1 | 309 | 125 | 459 | 5.37e-55 | 189 |
| Msa1466820 | AT1G67900.4 | 38.304 | 342 | 171 | 6 | 1 | 309 | 125 | 459 | 5.37e-55 | 189 |
| Msa1466820 | AT3G26490.2 | 34.835 | 333 | 186 | 6 | 1 | 310 | 134 | 458 | 8.27e-52 | 178 |
| Msa1466820 | AT3G26490.1 | 34.639 | 332 | 186 | 6 | 1 | 309 | 134 | 457 | 1.13e-50 | 177 |
| Msa1466820 | AT3G26490.3 | 34.639 | 332 | 186 | 6 | 1 | 309 | 134 | 457 | 1.13e-50 | 177 |
| Msa1466820 | AT3G26490.4 | 34.639 | 332 | 186 | 6 | 1 | 309 | 134 | 457 | 1.13e-50 | 177 |
| Msa1466820 | AT5G13600.1 | 34.743 | 331 | 180 | 13 | 1 | 309 | 127 | 443 | 4.12e-46 | 164 |
| Msa1466820 | AT5G03250.2 | 31.402 | 328 | 198 | 8 | 3 | 309 | 19 | 340 | 1.20e-43 | 156 |
| Msa1466820 | AT5G03250.1 | 31.595 | 326 | 196 | 8 | 5 | 309 | 133 | 452 | 5.10e-43 | 156 |
| Msa1466820 | AT3G44820.1 | 31.343 | 335 | 199 | 6 | 1 | 308 | 128 | 458 | 5.85e-43 | 156 |
| Msa1466820 | AT5G48800.1 | 33.333 | 315 | 181 | 7 | 1 | 309 | 143 | 434 | 1.07e-41 | 152 |
| Msa1466820 | AT5G67385.4 | 34.505 | 313 | 175 | 8 | 6 | 309 | 88 | 379 | 1.15e-41 | 152 |
| Msa1466820 | AT5G67385.5 | 34.505 | 313 | 175 | 8 | 6 | 309 | 88 | 379 | 1.15e-41 | 152 |
| Msa1466820 | AT5G67385.2 | 34.505 | 313 | 175 | 8 | 6 | 309 | 88 | 379 | 1.15e-41 | 152 |
| Msa1466820 | AT5G67385.3 | 34.505 | 313 | 175 | 8 | 6 | 309 | 88 | 379 | 1.15e-41 | 152 |
| Msa1466820 | AT5G67385.1 | 34.505 | 313 | 175 | 8 | 6 | 309 | 133 | 424 | 1.82e-41 | 152 |
| Msa1466820 | AT5G66560.2 | 33.435 | 329 | 186 | 11 | 1 | 309 | 165 | 480 | 1.99e-41 | 150 |
| Msa1466820 | AT1G03010.3 | 36.310 | 336 | 170 | 11 | 1 | 309 | 134 | 452 | 1.78e-40 | 149 |
| Msa1466820 | AT1G03010.2 | 36.310 | 336 | 170 | 11 | 1 | 309 | 108 | 426 | 1.98e-40 | 149 |
| Msa1466820 | AT1G03010.1 | 36.310 | 336 | 170 | 11 | 1 | 309 | 135 | 453 | 2.19e-40 | 149 |
| Msa1466820 | AT5G66560.3 | 33.131 | 329 | 187 | 11 | 1 | 309 | 136 | 451 | 4.85e-40 | 148 |
| Msa1466820 | AT5G66560.4 | 33.131 | 329 | 187 | 11 | 1 | 309 | 126 | 441 | 6.49e-40 | 148 |
| Msa1466820 | AT5G66560.1 | 33.131 | 329 | 187 | 11 | 1 | 309 | 165 | 480 | 8.45e-40 | 148 |
| Msa1466820 | AT1G30440.1 | 32.831 | 332 | 187 | 10 | 5 | 308 | 134 | 457 | 4.32e-39 | 146 |
| Msa1466820 | AT3G49970.1 | 33.861 | 316 | 151 | 10 | 1 | 309 | 95 | 359 | 4.98e-38 | 141 |
| Msa1466820 | AT3G49970.2 | 33.861 | 316 | 151 | 10 | 1 | 309 | 95 | 359 | 4.98e-38 | 141 |
| Msa1466820 | AT2G47860.4 | 33.033 | 333 | 175 | 9 | 1 | 309 | 136 | 444 | 5.34e-38 | 140 |
| Msa1466820 | AT2G47860.6 | 33.033 | 333 | 175 | 9 | 1 | 309 | 159 | 467 | 7.02e-38 | 140 |
| Msa1466820 | AT2G47860.5 | 33.033 | 333 | 175 | 9 | 1 | 309 | 18 | 326 | 1.76e-37 | 140 |
| Msa1466820 | AT2G47860.2 | 33.033 | 333 | 175 | 9 | 1 | 309 | 18 | 326 | 1.76e-37 | 140 |
| Msa1466820 | AT2G47860.1 | 33.033 | 333 | 175 | 9 | 1 | 309 | 136 | 444 | 6.76e-37 | 139 |
| Msa1466820 | AT2G47860.3 | 33.033 | 333 | 175 | 9 | 1 | 309 | 159 | 467 | 8.57e-37 | 139 |
| Msa1466820 | AT5G10250.2 | 30.294 | 340 | 158 | 10 | 5 | 309 | 157 | 452 | 1.92e-36 | 138 |
| Msa1466820 | AT2G30520.2 | 31.269 | 323 | 173 | 10 | 1 | 309 | 84 | 371 | 3.74e-36 | 136 |
| Msa1466820 | AT2G30520.3 | 31.269 | 323 | 173 | 10 | 1 | 309 | 84 | 371 | 3.74e-36 | 136 |
| Msa1466820 | AT2G30520.1 | 31.269 | 323 | 173 | 10 | 1 | 309 | 132 | 419 | 4.30e-36 | 137 |
| Msa1466820 | AT3G08660.2 | 33.333 | 315 | 171 | 11 | 1 | 309 | 135 | 416 | 1.82e-35 | 133 |
| Msa1466820 | AT3G08570.1 | 33.438 | 317 | 177 | 10 | 6 | 308 | 143 | 439 | 3.36e-35 | 134 |
| Msa1466820 | AT3G08660.3 | 33.016 | 315 | 172 | 11 | 5 | 313 | 79 | 360 | 1.80e-34 | 132 |
| Msa1466820 | AT3G08660.1 | 33.016 | 315 | 172 | 11 | 5 | 313 | 139 | 420 | 3.55e-34 | 131 |
| Msa1466820 | AT5G10250.1 | 30.395 | 329 | 157 | 10 | 5 | 309 | 157 | 437 | 2.20e-33 | 129 |
| Msa1466820 | AT1G52770.1 | 33.607 | 244 | 126 | 4 | 84 | 309 | 28 | 253 | 1.09e-32 | 126 |
| Msa1466820 | AT3G50840.2 | 30.275 | 327 | 174 | 9 | 1 | 309 | 83 | 373 | 2.22e-30 | 120 |
| Msa1466820 | AT3G50840.3 | 30.275 | 327 | 174 | 9 | 1 | 309 | 83 | 373 | 2.22e-30 | 120 |
| Msa1466820 | AT3G50840.1 | 30.275 | 327 | 174 | 9 | 1 | 309 | 119 | 409 | 2.83e-30 | 120 |
| Msa1466820 | AT3G15570.1 | 31.452 | 248 | 130 | 4 | 84 | 309 | 29 | 258 | 7.19e-29 | 115 |
| Msa1466820 | AT5G64330.3 | 36.126 | 191 | 99 | 4 | 142 | 313 | 314 | 500 | 1.59e-28 | 115 |
| Msa1466820 | AT5G64330.3 | 33.333 | 147 | 80 | 3 | 1 | 131 | 95 | 239 | 6.04e-18 | 84.7 |
| Msa1466820 | AT5G64330.1 | 36.126 | 191 | 99 | 4 | 142 | 313 | 373 | 559 | 1.84e-28 | 115 |
| Msa1466820 | AT5G64330.1 | 33.333 | 147 | 80 | 3 | 1 | 131 | 154 | 298 | 1.16e-17 | 84.0 |
| Msa1466820 | AT5G64330.2 | 36.126 | 191 | 99 | 4 | 142 | 313 | 373 | 559 | 2.19e-28 | 115 |
| Msa1466820 | AT5G64330.2 | 33.333 | 147 | 80 | 3 | 1 | 131 | 154 | 298 | 7.44e-18 | 84.7 |
| Msa1466820 | AT3G19850.1 | 29.876 | 241 | 135 | 10 | 74 | 308 | 202 | 414 | 1.08e-16 | 80.9 |
| Msa1466820 | AT3G22104.4 | 31.138 | 167 | 93 | 3 | 143 | 308 | 164 | 309 | 4.71e-16 | 78.6 |
| Msa1466820 | AT3G22104.2 | 31.138 | 167 | 93 | 3 | 143 | 308 | 164 | 309 | 4.71e-16 | 78.6 |
| Msa1466820 | AT3G22104.3 | 31.138 | 167 | 93 | 3 | 143 | 308 | 164 | 309 | 4.71e-16 | 78.6 |
| Msa1466820 | AT3G22104.1 | 31.548 | 168 | 93 | 3 | 143 | 309 | 239 | 385 | 7.83e-16 | 78.2 |
| Msa1466820 | AT5G17580.1 | 25.949 | 316 | 196 | 12 | 1 | 308 | 106 | 391 | 4.45e-14 | 73.2 |
| Msa1466820 | AT5G17580.2 | 25.949 | 316 | 196 | 12 | 1 | 308 | 121 | 406 | 6.13e-14 | 72.8 |
| Msa1466820 | AT3G03510.1 | 27.273 | 231 | 135 | 8 | 85 | 308 | 106 | 310 | 3.27e-12 | 67.4 |
| Msa1466820 | AT1G50280.1 | 28.512 | 242 | 132 | 9 | 82 | 308 | 200 | 415 | 5.17e-12 | 66.6 |
| Msa1466820 | AT1G50280.2 | 28.512 | 242 | 132 | 9 | 82 | 308 | 167 | 382 | 6.94e-12 | 66.2 |
Find 0 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAACAAATATCAAAACCA+AGG | + | tig0048942:298-317 | Msa1466820:CDS | 20.0% |
| !! | TATAGTACAGAAAATTGTAA+GGG | + | tig0048942:649-668 | Msa1466820:CDS | 20.0% |
| !! | TATAACAAATATCAAAACCA+AGG | + | tig0048942:298-317 | Msa1466820:CDS | 20.0% |
| !! | TATAGTACAGAAAATTGTAA+GGG | + | tig0048942:649-668 | Msa1466820:CDS | 20.0% |
| ! | ATTCAATCTAACGATGTAAT+TGG | + | tig0048942:323-342 | Msa1466820:CDS | 25.0% |
| !! | TTTTTGTAGAATCAGAAGAT+AGG | + | tig0048942:519-538 | Msa1466820:CDS | 25.0% |
| ! | GTATAGTACAGAAAATTGTA+AGG | + | tig0048942:648-667 | Msa1466820:CDS | 25.0% |
| ! | AAATCTGACAATGGTAAATT+AGG | - | tig0048942:824-843 | Msa1466820:intergenic | 25.0% |
| ! | AGATTAACAAAATCTGACAA+TGG | - | tig0048942:833-852 | Msa1466820:intergenic | 25.0% |
| ! | ATTCAATCTAACGATGTAAT+TGG | + | tig0048942:323-342 | Msa1466820:CDS | 25.0% |
| !! | TTTTTGTAGAATCAGAAGAT+AGG | + | tig0048942:519-538 | Msa1466820:CDS | 25.0% |
| ! | GTATAGTACAGAAAATTGTA+AGG | + | tig0048942:648-667 | Msa1466820:CDS | 25.0% |
| ! | AAATCTGACAATGGTAAATT+AGG | - | tig0048942:824-843 | Msa1466820:intergenic | 25.0% |
| ! | AGATTAACAAAATCTGACAA+TGG | - | tig0048942:833-852 | Msa1466820:intergenic | 25.0% |
| TTGCTATAGATTCAATGCAA+CGG | - | tig0048942:103-122 | Msa1466820:intergenic | 30.0% | |
| CATTGAATCTATAGCAAACA+AGG | + | tig0048942:106-125 | Msa1466820:CDS | 30.0% | |
| ATATAACCGAAAAAAGCTTC+CGG | + | tig0048942:166-185 | Msa1466820:CDS | 30.0% | |
| ATCGTTAGATTGAATTTCCT+TGG | - | tig0048942:318-337 | Msa1466820:intergenic | 30.0% | |
| !!! | ATTTTGATTAAAGCACCAGA+TGG | + | tig0048942:602-621 | Msa1466820:CDS | 30.0% |
| GAGATTACAATGTATGATGT+TGG | + | tig0048942:626-645 | Msa1466820:CDS | 30.0% | |
| TTGCTATAGATTCAATGCAA+CGG | - | tig0048942:103-122 | Msa1466820:intergenic | 30.0% | |
| CATTGAATCTATAGCAAACA+AGG | + | tig0048942:106-125 | Msa1466820:CDS | 30.0% | |
| ATATAACCGAAAAAAGCTTC+CGG | + | tig0048942:166-185 | Msa1466820:CDS | 30.0% | |
| ATCGTTAGATTGAATTTCCT+TGG | - | tig0048942:318-337 | Msa1466820:intergenic | 30.0% | |
| !!! | ATTTTGATTAAAGCACCAGA+TGG | + | tig0048942:602-621 | Msa1466820:CDS | 30.0% |
| GAGATTACAATGTATGATGT+TGG | + | tig0048942:626-645 | Msa1466820:CDS | 30.0% | |
| ! | TAGCATTTTTCGTAGTTGGA+AGG | + | tig0048942:10-29 | Msa1466820:CDS | 35.0% |
| TGTAGTCTGAAGAAGGATAA+TGG | - | tig0048942:39-58 | Msa1466820:intergenic | 35.0% | |
| AAGACTTTGTAGTCTGAAGA+AGG | - | tig0048942:46-65 | Msa1466820:intergenic | 35.0% | |
| TACAAAGTCTTTGTCACCAT+TGG | + | tig0048942:55-74 | Msa1466820:CDS | 35.0% | |
| !! | TCGATGTTTCTAAAGTTGAC+TGG | + | tig0048942:135-154 | Msa1466820:CDS | 35.0% |
| !!! | TTTCTTCCGGAAGCTTTTTT+CGG | - | tig0048942:175-194 | Msa1466820:intergenic | 35.0% |
| AAAAAGCTTCCGGAAGAAAA+TGG | + | tig0048942:176-195 | Msa1466820:CDS | 35.0% | |
| TCTGTAAGCATAAGCTTTCA+AGG | - | tig0048942:354-373 | Msa1466820:intergenic | 35.0% | |
| AAAGTTGCCAAATTTCAGCA+AGG | + | tig0048942:373-392 | Msa1466820:CDS | 35.0% | |
| AAGTTGCCAAATTTCAGCAA+GGG | + | tig0048942:374-393 | Msa1466820:CDS | 35.0% | |
| ATCATACCCTTGCTGAAATT+TGG | - | tig0048942:383-402 | Msa1466820:intergenic | 35.0% | |
| GATGTGCTAGTAAAGAGAAT+TGG | + | tig0048942:548-567 | Msa1466820:CDS | 35.0% | |
| TACATTGTAATCTCTCCATC+TGG | - | tig0048942:620-639 | Msa1466820:intergenic | 35.0% | |
| TCACAATTCCGAGATTGAAT+TGG | + | tig0048942:688-707 | Msa1466820:CDS | 35.0% | |
| AATTCCGAGATTGAATTGGT+TGG | + | tig0048942:692-711 | Msa1466820:CDS | 35.0% | |
| ATGGTTGCAAAACTCATAGA+TGG | + | tig0048942:773-792 | Msa1466820:CDS | 35.0% | |
| GGCTATTGACACATATTTGA+AGG | + | tig0048942:904-923 | Msa1466820:CDS | 35.0% | |
| ! | TAGCATTTTTCGTAGTTGGA+AGG | + | tig0048942:10-29 | Msa1466820:CDS | 35.0% |
| TGTAGTCTGAAGAAGGATAA+TGG | - | tig0048942:39-58 | Msa1466820:intergenic | 35.0% | |
| AAGACTTTGTAGTCTGAAGA+AGG | - | tig0048942:46-65 | Msa1466820:intergenic | 35.0% | |
| TACAAAGTCTTTGTCACCAT+TGG | + | tig0048942:55-74 | Msa1466820:CDS | 35.0% | |
| !! | TCGATGTTTCTAAAGTTGAC+TGG | + | tig0048942:135-154 | Msa1466820:CDS | 35.0% |
| !!! | TTTCTTCCGGAAGCTTTTTT+CGG | - | tig0048942:175-194 | Msa1466820:intergenic | 35.0% |
| AAAAAGCTTCCGGAAGAAAA+TGG | + | tig0048942:176-195 | Msa1466820:CDS | 35.0% | |
| TCTGTAAGCATAAGCTTTCA+AGG | - | tig0048942:354-373 | Msa1466820:intergenic | 35.0% | |
| AAAGTTGCCAAATTTCAGCA+AGG | + | tig0048942:373-392 | Msa1466820:CDS | 35.0% | |
| AAGTTGCCAAATTTCAGCAA+GGG | + | tig0048942:374-393 | Msa1466820:CDS | 35.0% | |
| ATCATACCCTTGCTGAAATT+TGG | - | tig0048942:383-402 | Msa1466820:intergenic | 35.0% | |
| GATGTGCTAGTAAAGAGAAT+TGG | + | tig0048942:548-567 | Msa1466820:CDS | 35.0% | |
| TACATTGTAATCTCTCCATC+TGG | - | tig0048942:620-639 | Msa1466820:intergenic | 35.0% | |
| TCACAATTCCGAGATTGAAT+TGG | + | tig0048942:688-707 | Msa1466820:CDS | 35.0% | |
| AATTCCGAGATTGAATTGGT+TGG | + | tig0048942:692-711 | Msa1466820:CDS | 35.0% | |
| ATGGTTGCAAAACTCATAGA+TGG | + | tig0048942:773-792 | Msa1466820:CDS | 35.0% | |
| GGCTATTGACACATATTTGA+AGG | + | tig0048942:904-923 | Msa1466820:CDS | 35.0% | |
| ! | GCTCTAGCATTTTTCGTAGT+TGG | + | tig0048942:6-25 | Msa1466820:CDS | 40.0% |
| !! | GACTCAAAGCCATTTTCTTC+CGG | - | tig0048942:188-207 | Msa1466820:intergenic | 40.0% |
| ! | AGTTCTAACTCCATTCTGGT+TGG | - | tig0048942:210-229 | Msa1466820:intergenic | 40.0% |
| ! | TTCGAGTTCTAACTCCATTC+TGG | - | tig0048942:214-233 | Msa1466820:intergenic | 40.0% |
| TAGAACTCGAAATGTGCCAA+AGG | + | tig0048942:223-242 | Msa1466820:CDS | 40.0% | |
| GAGAATTGGTCAGCAATTAG+AGG | + | tig0048942:562-581 | Msa1466820:CDS | 40.0% | |
| AATTGGTCAGCAATTAGAGG+AGG | + | tig0048942:565-584 | Msa1466820:CDS | 40.0% | |
| ACCTCCAACCAATTCAATCT+CGG | - | tig0048942:699-718 | Msa1466820:intergenic | 40.0% | |
| ACTTGAAGGGATAAGAAAGC+CGG | + | tig0048942:724-743 | Msa1466820:CDS | 40.0% | |
| ! | TTTTGCAACCATCAGCTTAG+AGG | - | tig0048942:765-784 | Msa1466820:intergenic | 40.0% |
| ATGTGTCAATAGCCCTGTAA+AGG | - | tig0048942:898-917 | Msa1466820:intergenic | 40.0% | |
| ! | GCTCTAGCATTTTTCGTAGT+TGG | + | tig0048942:6-25 | Msa1466820:CDS | 40.0% |
| !! | GACTCAAAGCCATTTTCTTC+CGG | - | tig0048942:188-207 | Msa1466820:intergenic | 40.0% |
| ! | AGTTCTAACTCCATTCTGGT+TGG | - | tig0048942:210-229 | Msa1466820:intergenic | 40.0% |
| ! | TTCGAGTTCTAACTCCATTC+TGG | - | tig0048942:214-233 | Msa1466820:intergenic | 40.0% |
| TAGAACTCGAAATGTGCCAA+AGG | + | tig0048942:223-242 | Msa1466820:CDS | 40.0% | |
| GAGAATTGGTCAGCAATTAG+AGG | + | tig0048942:562-581 | Msa1466820:CDS | 40.0% | |
| AATTGGTCAGCAATTAGAGG+AGG | + | tig0048942:565-584 | Msa1466820:CDS | 40.0% | |
| ACCTCCAACCAATTCAATCT+CGG | - | tig0048942:699-718 | Msa1466820:intergenic | 40.0% | |
| ACTTGAAGGGATAAGAAAGC+CGG | + | tig0048942:724-743 | Msa1466820:CDS | 40.0% | |
| ! | TTTTGCAACCATCAGCTTAG+AGG | - | tig0048942:765-784 | Msa1466820:intergenic | 40.0% |
| ATGTGTCAATAGCCCTGTAA+AGG | - | tig0048942:898-917 | Msa1466820:intergenic | 40.0% | |
| GTCTTTGTCACCATTGGATG+AGG | + | tig0048942:61-80 | Msa1466820:CDS | 45.0% | |
| ACCATTGGATGAGGAGCAAA+AGG | + | tig0048942:70-89 | Msa1466820:CDS | 45.0% | |
| ! | ACCTTTTGCTCCTCATCCAA+TGG | - | tig0048942:74-93 | Msa1466820:intergenic | 45.0% |
| ! | AAATGTGCCAAAGGACTGGT+GGG | + | tig0048942:232-251 | Msa1466820:CDS | 45.0% |
| AAGTTGTTGCCTTCCGAGAA+AGG | + | tig0048942:452-471 | Msa1466820:CDS | 45.0% | |
| ACACGAAACACTGCCTTTCT+CGG | - | tig0048942:468-487 | Msa1466820:intergenic | 45.0% | |
| AGAAAGGCAGTGTTTCGTGT+AGG | + | tig0048942:468-487 | Msa1466820:CDS | 45.0% | |
| CAGTGTTTCGTGTAGGTTCT+TGG | + | tig0048942:475-494 | Msa1466820:CDS | 45.0% | |
| TCCGAGATTGAATTGGTTGG+AGG | + | tig0048942:695-714 | Msa1466820:CDS | 45.0% | |
| GAGATTGAATTGGTTGGAGG+TGG | + | tig0048942:698-717 | Msa1466820:CDS | 45.0% | |
| CTTGAAGGGATAAGAAAGCC+GGG | + | tig0048942:725-744 | Msa1466820:CDS | 45.0% | |
| TTGAAGGGATAAGAAAGCCG+GGG | + | tig0048942:726-745 | Msa1466820:CDS | 45.0% | |
| ! | GAGGCATCTGATAAAATCCC+CGG | - | tig0048942:746-765 | Msa1466820:intergenic | 45.0% |
| ATCAGATGCCTCTAAGCTGA+TGG | + | tig0048942:754-773 | Msa1466820:CDS | 45.0% | |
| ATACCTTGCTGAAATCGCGA+AGG | + | tig0048942:796-815 | Msa1466820:CDS | 45.0% | |
| CTGTAAAGGCCATCATGAGA+CGG | - | tig0048942:884-903 | Msa1466820:intergenic | 45.0% | |
| GTCTCATGATGGCCTTTACA+GGG | + | tig0048942:883-902 | Msa1466820:CDS | 45.0% | |
| GTCTTTGTCACCATTGGATG+AGG | + | tig0048942:61-80 | Msa1466820:CDS | 45.0% | |
| ACCATTGGATGAGGAGCAAA+AGG | + | tig0048942:70-89 | Msa1466820:CDS | 45.0% | |
| ! | ACCTTTTGCTCCTCATCCAA+TGG | - | tig0048942:74-93 | Msa1466820:intergenic | 45.0% |
| ! | AAATGTGCCAAAGGACTGGT+GGG | + | tig0048942:232-251 | Msa1466820:CDS | 45.0% |
| AAGTTGTTGCCTTCCGAGAA+AGG | + | tig0048942:452-471 | Msa1466820:CDS | 45.0% | |
| ACACGAAACACTGCCTTTCT+CGG | - | tig0048942:468-487 | Msa1466820:intergenic | 45.0% | |
| AGAAAGGCAGTGTTTCGTGT+AGG | + | tig0048942:468-487 | Msa1466820:CDS | 45.0% | |
| CAGTGTTTCGTGTAGGTTCT+TGG | + | tig0048942:475-494 | Msa1466820:CDS | 45.0% | |
| TCCGAGATTGAATTGGTTGG+AGG | + | tig0048942:695-714 | Msa1466820:CDS | 45.0% | |
| GAGATTGAATTGGTTGGAGG+TGG | + | tig0048942:698-717 | Msa1466820:CDS | 45.0% | |
| CTTGAAGGGATAAGAAAGCC+GGG | + | tig0048942:725-744 | Msa1466820:CDS | 45.0% | |
| TTGAAGGGATAAGAAAGCCG+GGG | + | tig0048942:726-745 | Msa1466820:CDS | 45.0% | |
| ! | GAGGCATCTGATAAAATCCC+CGG | - | tig0048942:746-765 | Msa1466820:intergenic | 45.0% |
| ATCAGATGCCTCTAAGCTGA+TGG | + | tig0048942:754-773 | Msa1466820:CDS | 45.0% | |
| ATACCTTGCTGAAATCGCGA+AGG | + | tig0048942:796-815 | Msa1466820:CDS | 45.0% | |
| CTGTAAAGGCCATCATGAGA+CGG | - | tig0048942:884-903 | Msa1466820:intergenic | 45.0% | |
| GTCTCATGATGGCCTTTACA+GGG | + | tig0048942:883-902 | Msa1466820:CDS | 45.0% | |
| !! | GGCTTTGAGTCCAACCAGAA+TGG | + | tig0048942:197-216 | Msa1466820:CDS | 50.0% |
| CTCGAAATGTGCCAAAGGAC+TGG | + | tig0048942:228-247 | Msa1466820:CDS | 50.0% | |
| GAAATGTGCCAAAGGACTGG+TGG | + | tig0048942:231-250 | Msa1466820:CDS | 50.0% | |
| TCTTCAACCCACCAGTCCTT+TGG | - | tig0048942:242-261 | Msa1466820:intergenic | 50.0% | |
| ! | CAAGGGTATGATCCCATGTG+AGG | + | tig0048942:391-410 | Msa1466820:CDS | 50.0% |
| GCTTCGACACATCCTCACAT+GGG | - | tig0048942:406-425 | Msa1466820:intergenic | 50.0% | |
| TGCTTCGACACATCCTCACA+TGG | - | tig0048942:407-426 | Msa1466820:intergenic | 50.0% | |
| GTGAGGATGTGTCGAAGCAT+CGG | + | tig0048942:408-427 | Msa1466820:CDS | 50.0% | |
| GAAACACTGCCTTTCTCGGA+AGG | - | tig0048942:464-483 | Msa1466820:intergenic | 50.0% | |
| TTGGAGGTGGCGAACTTGAA+GGG | + | tig0048942:711-730 | Msa1466820:CDS | 50.0% | |
| GATCCTTCGCGATTTCAGCA+AGG | - | tig0048942:802-821 | Msa1466820:intergenic | 50.0% | |
| ATCTCTCGTCCGTCTCATGA+TGG | + | tig0048942:872-891 | Msa1466820:CDS | 50.0% | |
| CGTCTCATGATGGCCTTTAC+AGG | + | tig0048942:882-901 | Msa1466820:CDS | 50.0% | |
| !! | GGCTTTGAGTCCAACCAGAA+TGG | + | tig0048942:197-216 | Msa1466820:CDS | 50.0% |
| CTCGAAATGTGCCAAAGGAC+TGG | + | tig0048942:228-247 | Msa1466820:CDS | 50.0% | |
| GAAATGTGCCAAAGGACTGG+TGG | + | tig0048942:231-250 | Msa1466820:CDS | 50.0% | |
| TCTTCAACCCACCAGTCCTT+TGG | - | tig0048942:242-261 | Msa1466820:intergenic | 50.0% | |
| ! | CAAGGGTATGATCCCATGTG+AGG | + | tig0048942:391-410 | Msa1466820:CDS | 50.0% |
| GCTTCGACACATCCTCACAT+GGG | - | tig0048942:406-425 | Msa1466820:intergenic | 50.0% | |
| TGCTTCGACACATCCTCACA+TGG | - | tig0048942:407-426 | Msa1466820:intergenic | 50.0% | |
| GTGAGGATGTGTCGAAGCAT+CGG | + | tig0048942:408-427 | Msa1466820:CDS | 50.0% | |
| GAAACACTGCCTTTCTCGGA+AGG | - | tig0048942:464-483 | Msa1466820:intergenic | 50.0% | |
| TTGGAGGTGGCGAACTTGAA+GGG | + | tig0048942:711-730 | Msa1466820:CDS | 50.0% | |
| GATCCTTCGCGATTTCAGCA+AGG | - | tig0048942:802-821 | Msa1466820:intergenic | 50.0% | |
| ATCTCTCGTCCGTCTCATGA+TGG | + | tig0048942:872-891 | Msa1466820:CDS | 50.0% | |
| CGTCTCATGATGGCCTTTAC+AGG | + | tig0048942:882-901 | Msa1466820:CDS | 50.0% | |
| GTTGGAGGTGGCGAACTTGA+AGG | + | tig0048942:710-729 | Msa1466820:CDS | 55.0% | |
| GTTGGAGGTGGCGAACTTGA+AGG | + | tig0048942:710-729 | Msa1466820:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0048942 | gene | 2 | 943 | 2 | ID=Msa1466820;Name=Msa1466820 |
| tig0048942 | mRNA | 2 | 943 | 2 | ID=Msa1466820-mRNA-1;Parent=Msa1466820;Name=Msa1466820-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|313 |
| tig0048942 | exon | 2 | 943 | 2 | ID=Msa1466820-mRNA-1:exon:25150;Parent=Msa1466820-mRNA-1 |
| tig0048942 | CDS | 2 | 943 | 2 | ID=Msa1466820-mRNA-1:cds;Parent=Msa1466820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
