AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0100890

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100890 MtrunA17_Chr1g0149101 94.292 876 40 5 1 875 1 867 0.0 1628
Msa0100890 MtrunA17_Chr5g0394661 48.404 188 94 3 483 669 464 649 6.31e-50 189
Msa0100890 MtrunA17_Chr8g0390351 41.040 173 90 6 479 645 52 218 2.94e-29 124
Msa0100890 MtrunA17_Chr3g0139951 37.634 186 107 5 449 631 90 269 1.01e-28 119
Msa0100890 MtrunA17_Chr6g0485811 47.727 132 60 3 506 634 128 253 1.05e-28 122
Msa0100890 MtrunA17_Chr1g0158111 82.258 62 11 0 432 493 5 66 1.07e-27 107
Msa0100890 MtrunA17_Chr1g0205031 37.008 127 78 1 508 634 407 531 5.88e-24 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0100890 AT3G22780.1 33.704 540 234 23 329 853 263 693 6.78e-61 220
Msa0100890 AT3G22760.2 39.118 340 153 11 308 646 56 342 1.23e-53 194
Msa0100890 AT3G22760.1 39.118 340 153 11 308 646 179 465 6.13e-53 195
Msa0100890 AT4G14770.1 38.636 308 138 8 327 634 245 501 3.52e-50 189
Msa0100890 AT4G14770.1 27.300 337 181 12 573 853 344 672 1.20e-14 78.6
Msa0100890 AT4G14770.3 38.636 308 138 8 327 634 226 482 3.60e-50 188
Msa0100890 AT4G14770.3 27.976 336 180 13 573 853 325 653 1.05e-14 79.0
Msa0100890 AT4G14770.2 38.636 308 138 8 327 634 225 481 3.83e-50 188
Msa0100890 AT4G14770.2 27.976 336 180 13 573 853 324 652 1.08e-14 79.0
Msa0100890 AT3G04850.1 33.739 329 152 9 325 631 292 576 7.36e-46 175
Msa0100890 AT5G25790.3 43.750 160 77 7 488 643 74 224 2.51e-30 125
Msa0100890 AT5G25790.1 42.593 162 80 6 488 643 74 228 3.63e-30 125
Msa0100890 AT5G25790.2 40.437 183 90 7 467 643 59 228 4.14e-30 125
Msa0100890 AT2G20110.3 46.099 141 67 4 506 642 119 254 5.07e-30 126
Msa0100890 AT2G20110.1 46.099 141 67 4 506 642 119 254 5.62e-30 126
Msa0100890 AT2G20110.2 46.099 141 67 4 506 642 119 254 9.49e-30 125
Msa0100890 AT4G29000.1 44.366 142 68 5 506 642 132 267 4.93e-28 120
Msa0100890 AT3G16160.1 46.774 124 60 3 506 629 66 183 9.96e-25 107

Find 243 sgRNAs with CRISPR-Local

Find 440 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGTAGATTGTTCCATTTC+TGG 0.116107 1_3:+7338875 None:intergenic
TCCCTCTTCTTCAATCTATT+TGG 0.177641 1_3:-7334394 Msa0100890:three_prime_UTR
CGTAGACGCTGCCTACAATT+TGG 0.186201 1_3:-7337450 Msa0100890:CDS
TGCGGTATTCGCCAGTTATC+TGG 0.216353 1_3:-7334914 Msa0100890:CDS
GAAGCCTTGACAGGCTTTAT+TGG 0.243588 1_3:+7339326 None:intergenic
AGCATCTGTCGATGAATATT+TGG 0.259084 1_3:-7338933 Msa0100890:CDS
ATGTTTCTGTATCTGATAAA+TGG 0.260838 1_3:+7339110 None:intergenic
GTGGAGGAGAAACTCTCTTT+TGG 0.268257 1_3:+7334732 None:intergenic
TTTGTTGGAGGAATCTAATA+TGG 0.270000 1_3:-7338756 Msa0100890:CDS
AACACGGCCATCCCTCTTAA+AGG 0.270855 1_3:+7334140 None:intergenic
TTCTCCCCTTCAATTGTTGC+AGG 0.272545 1_3:+7338701 None:intergenic
GAGGGATGGCCGTGTTAATT+AGG 0.288571 1_3:-7334133 Msa0100890:three_prime_UTR
CTATTTGGTGTAGAATGTTT+TGG 0.292638 1_3:-7334440 Msa0100890:three_prime_UTR
GCATTATTGAGTTGAGTTAT+AGG 0.292770 1_3:-7340511 Msa0100890:five_prime_UTR
TGGTAACAGAGTAGAATTTC+AGG 0.294634 1_3:-7336659 Msa0100890:CDS
ATGCAAACTTATAGAAGATT+TGG 0.296279 1_3:+7337230 None:intergenic
GATTCATACAATAAGTAATC+TGG 0.298960 1_3:+7334329 None:intergenic
GAAGCTGCTTCCGTTGTTCT+TGG 0.299878 1_3:-7337426 Msa0100890:CDS
CATTATTGAGTTGAGTTATA+GGG 0.302617 1_3:-7340510 Msa0100890:five_prime_UTR
CATTGCAACAATGGTGTTAC+AGG 0.307892 1_3:+7335243 None:intergenic
TTCTTAATCTGAGAAGCTTC+TGG 0.309298 1_3:+7340425 None:intergenic
ATGCTGGAGGACTGCAGCTT+TGG 0.311010 1_3:+7338951 None:intergenic
GTAGACGCTGCCTACAATTT+GGG 0.311899 1_3:-7337449 Msa0100890:CDS
CTCTTATCAGGTGCATTTGC+CGG 0.312680 1_3:+7337051 None:intergenic
TGCTGGAGGACTGCAGCTTT+GGG 0.318678 1_3:+7338952 None:intergenic
TTCTATAAGTTTGCATATAG+TGG 0.322912 1_3:-7337223 Msa0100890:CDS
CAGTAGATTGTTCCATTTCT+GGG 0.324248 1_3:+7338876 None:intergenic
CATGCGACACATGGGTTTCT+CGG 0.326256 1_3:-7339302 Msa0100890:CDS
ATCCTCAACTCCGTCCAATA+TGG 0.338930 1_3:-7337187 Msa0100890:CDS
TGATGTTCCACTGAATAATA+TGG 0.341118 1_3:-7336557 Msa0100890:intron
TTGCAATGGCAATGAGGATT+CGG 0.342240 1_3:-7334588 Msa0100890:CDS
CTTCAATCTATTTGGCAAAC+AGG 0.353004 1_3:-7334386 Msa0100890:three_prime_UTR
CTGGCGAATACCGCATCTAT+TGG 0.354125 1_3:+7334922 None:intergenic
GGGCGTACCCTCCTCTTATC+AGG 0.364892 1_3:+7337039 None:intergenic
TGCAGTTACTGTGATTGTTT+TGG 0.366597 1_3:-7336724 Msa0100890:intron
AAGTTATATTAAAATTTGAT+AGG 0.367397 1_3:-7338817 Msa0100890:CDS
AGCAAATGCTTGTGGATTAC+GGG 0.369212 1_3:+7336603 None:intergenic
AGTGTTGACAAATCTCAAAA+AGG 0.377839 1_3:+7339355 None:intergenic
AAAAGATTGATCATCCATAT+TGG 0.378531 1_3:+7337173 None:intergenic
AGCTGCACATGGTACAATCT+TGG 0.387960 1_3:+7336579 None:intergenic
ATTTGCTTTCACAGACTTGA+TGG 0.391070 1_3:+7334763 None:intergenic
GAGCAAATGCTTGTGGATTA+CGG 0.393901 1_3:+7336602 None:intergenic
CTACTGAAGCATCAGTTTCA+TGG 0.398320 1_3:+7337130 None:intergenic
GGCAGAAAATTGTGACAATC+AGG 0.407491 1_3:-7335299 Msa0100890:CDS
CGAGACTCCATTTGAGCATA+TGG 0.410622 1_3:+7334164 None:intergenic
TGCAATGGCAATGAGGATTC+GGG 0.411133 1_3:-7334587 Msa0100890:CDS
AAGTTAGCGCTTGGGGTAAT+CGG 0.415030 1_3:+7334863 None:intergenic
CAACCCAATGCCTGGTGGCT+TGG 0.420396 1_3:+7337335 None:intergenic
GCGGTATTCGCCAGTTATCT+GGG 0.421949 1_3:-7334913 Msa0100890:CDS
GAGATTATCAGATGGTATAC+AGG 0.422125 1_3:-7337256 Msa0100890:CDS
AGTTCTTCTGCTATGTTACT+AGG 0.425346 1_3:+7338785 None:intergenic
CATCATCTAAGTTAGCGCTT+GGG 0.426755 1_3:+7334855 None:intergenic
TGTTCCATTTCTGGGTTGAC+TGG 0.428222 1_3:+7338884 None:intergenic
TGATCCTATCCAGGCTGTTA+AGG 0.432469 1_3:-7338391 Msa0100890:CDS
GAAAATCCTGCAACAATTGA+AGG 0.434474 1_3:-7338707 Msa0100890:CDS
ACTTTGCACCCTGCTTGCCT+TGG 0.435412 1_3:+7335095 None:intergenic
AATGATGTATACTTGAACTT+GGG 0.435796 1_3:+7340328 None:intergenic
CGGATTGGATCAAGCTCCTC+AGG 0.435804 1_3:-7334695 Msa0100890:CDS
GCTAACGTTGGATGCTCGAC+TGG 0.440058 1_3:-7336263 Msa0100890:CDS
TGCCCTCAATGTGTGTATAA+TGG 0.440939 1_3:-7334523 Msa0100890:three_prime_UTR
GTATCCAGTCAACCCAGAAA+TGG 0.441055 1_3:-7338888 Msa0100890:CDS
TGTTTCTGTATCTGATAAAT+GGG 0.441713 1_3:+7339111 None:intergenic
GAAGCTTCCTTCAATACATC+AGG 0.449228 1_3:+7334791 None:intergenic
CGAGTATTGTGTTTCACGGT+GGG 0.450483 1_3:+7339232 None:intergenic
GTGAACAGTTCTTCTTCTGA+TGG 0.451601 1_3:-7340453 Msa0100890:exon
GATGGATGTATGAATGTCTT+TGG 0.451729 1_3:-7336230 Msa0100890:CDS
ATGGAGTCTCGTCCTTTAAG+AGG 0.457164 1_3:-7334152 Msa0100890:three_prime_UTR
TGAAACACCTGATGTATTGA+AGG 0.458665 1_3:-7334798 Msa0100890:CDS
TTCTTACAGTTGCACGTCTT+AGG 0.458861 1_3:+7336842 None:intergenic
TGGATGACAAACTGCACAAA+AGG 0.461259 1_3:-7335320 Msa0100890:CDS
TTTGTATGTATCAGGCTTGA+AGG 0.461411 1_3:-7339136 Msa0100890:intron
TCATCATCTAAGTTAGCGCT+TGG 0.462532 1_3:+7334854 None:intergenic
TTTCCAAGCCACCAGGCATT+GGG 0.462604 1_3:-7337338 Msa0100890:CDS
GTTTCCAAGCCACCAGGCAT+TGG 0.462633 1_3:-7337339 Msa0100890:CDS
TCGATGGATTCTGTCAAGAT+AGG 0.463592 1_3:+7337081 None:intergenic
TACGGATGCCATGATACTTT+AGG 0.463804 1_3:+7337469 None:intergenic
TTTCAAATTCCTTAACAGCC+TGG 0.465100 1_3:+7338382 None:intergenic
AAATATTCATCGACAGATGC+TGG 0.465549 1_3:+7338935 None:intergenic
AGGATTGGTGATGGCGGTGG+CGG 0.467054 1_3:+7340364 None:intergenic
TTGATCCAATCCGAAGTAGA+TGG 0.467929 1_3:+7334705 None:intergenic
TCTCAAGAGCGCATAAACTT+AGG 0.471873 1_3:-7338659 Msa0100890:CDS
GCTGCACATGGTACAATCTT+GGG 0.476181 1_3:+7336580 None:intergenic
ATCGAGGACGAGTATGATGC+AGG 0.477006 1_3:-7340480 Msa0100890:five_prime_UTR
ATAATGGTTGGCATCTTGTC+TGG 0.477239 1_3:-7334507 Msa0100890:three_prime_UTR
TTTCCGAGTATTGTGTTTCA+CGG 0.478137 1_3:+7339228 None:intergenic
CCTAGTTGTGCTTCAACTAC+AGG 0.478757 1_3:-7337282 Msa0100890:CDS
AAGCAGCTTCCCCAAATTGT+AGG 0.478821 1_3:+7337439 None:intergenic
TGCTGTTCCATATGCTCAAA+TGG 0.479425 1_3:-7334171 Msa0100890:three_prime_UTR
AATTTCAAGCTTCAGTGTGC+AGG 0.480226 1_3:-7338459 Msa0100890:intron
GGGGTCAACGGCGGGAATGA+AGG 0.482884 1_3:+7334632 None:intergenic
CAGCGCAAGGGGTCAACGGC+GGG 0.483041 1_3:+7334624 None:intergenic
GTTGAATTCCTCAGCATCTG+TGG 0.485615 1_3:+7337017 None:intergenic
ATAAACTTAGGCTCGAGTTC+AGG 0.488527 1_3:-7338647 Msa0100890:CDS
AGAATCCATCGACCTATATC+CGG 0.490265 1_3:-7337070 Msa0100890:CDS
TTAACAGCCTGGATAGGATC+AGG 0.491802 1_3:+7338393 None:intergenic
CAACATTGTTGAAGAAGGGT+TGG 0.492695 1_3:-7335340 Msa0100890:CDS
TTTGTCCAGCCAAGGCAAGC+AGG 0.495977 1_3:-7335104 Msa0100890:intron
TTGCCATGATTCACTTCCCC+AGG 0.497451 1_3:-7338600 Msa0100890:intron
GAGAGCAACATTGTTGAAGA+AGG 0.497547 1_3:-7335345 Msa0100890:CDS
AAATGATGTATACTTGAACT+TGG 0.498024 1_3:+7340327 None:intergenic
CTAATATGGGTCATCAAGAA+AGG 0.501632 1_3:-7338742 Msa0100890:CDS
ACAGGTGAGAGGTGATTTGC+TGG 0.503058 1_3:+7335261 None:intergenic
CGGCAAATGCACCTGATAAG+AGG 0.504086 1_3:-7337050 Msa0100890:CDS
AAAGAGGTTGCAATTGCAAA+AGG 0.504487 1_3:-7336415 Msa0100890:CDS
TTGTTGGAGGAATCTAATAT+GGG 0.507321 1_3:-7338755 Msa0100890:CDS
AGAGGGAGGTGTCACAGAAA+TGG 0.508989 1_3:+7334410 None:intergenic
AACAATCTACTGATGCGGTT+GGG 0.512016 1_3:-7338865 Msa0100890:CDS
ATTGATGCCTGATCCTATCC+AGG 0.512947 1_3:-7338400 Msa0100890:CDS
ATTCATACAATAAGTAATCT+GGG 0.514405 1_3:+7334330 None:intergenic
CAAATTGTAGGCAGCGTCTA+CGG 0.518260 1_3:+7337451 None:intergenic
ATCATCTAAGTTAGCGCTTG+GGG 0.519646 1_3:+7334856 None:intergenic
GAACAATCTACTGATGCGGT+TGG 0.524575 1_3:-7338866 Msa0100890:CDS
GGGCATTCGCATCATTCTTG+AGG 0.524817 1_3:+7338972 None:intergenic
TACCGCATCTATTGGAGAGT+TGG 0.524893 1_3:+7334930 None:intergenic
TGAATATTTGGCTGATCCCG+TGG 0.525204 1_3:-7338921 Msa0100890:CDS
TTGTCCAGCCAAGGCAAGCA+GGG 0.526069 1_3:-7335103 Msa0100890:intron
TTTAAATGCAACCCAATGCC+TGG 0.526474 1_3:+7337327 None:intergenic
GTCTCGTCCTTTAAGAGGGA+TGG 0.527022 1_3:-7334147 Msa0100890:three_prime_UTR
TCCTCAGGTGGCTTGAAAAG+TGG 0.529192 1_3:-7334680 Msa0100890:CDS
TGCCAAATAGATTGAAGAAG+AGG 0.530591 1_3:+7334392 None:intergenic
CAGAGCCATCTACTTCGGAT+TGG 0.530846 1_3:-7334710 Msa0100890:CDS
CATCTATTGGAGAGTTGGTA+TGG 0.533401 1_3:+7334935 None:intergenic
AGAAGGATTGGTGATGGCGG+TGG 0.534777 1_3:+7340361 None:intergenic
GCTGGAATCTTCTGTGGCGA+CGG 0.536040 1_3:-7336700 Msa0100890:CDS
ATATTAGATTCCTCCAACAA+AGG 0.536833 1_3:+7338758 None:intergenic
TTGAATTCCTCAGCATCTGT+GGG 0.538648 1_3:+7337018 None:intergenic
TACTCAGAGCATTGCAACAA+TGG 0.538876 1_3:+7335234 None:intergenic
CAGGCTAGCCTAAAGTATCA+TGG 0.540060 1_3:-7337477 Msa0100890:CDS
CAACCATTATACACACATTG+AGG 0.540740 1_3:+7334520 None:intergenic
TTTGCTTTCACAGACTTGAT+GGG 0.542250 1_3:+7334764 None:intergenic
CCACCGTGAAACACAATACT+CGG 0.542340 1_3:-7339231 Msa0100890:CDS
TTACCTCAGAACCATCTTGT+GGG 0.543543 1_3:+7338313 None:intergenic
GTTATAAACACCTCTGGCAG+TGG 0.544020 1_3:+7339016 None:intergenic
ACATGCTTCTAGCAATGAAA+GGG 0.544689 1_3:-7335367 Msa0100890:CDS
TCAACCATCCTAGCACCTCC+AGG 0.545986 1_3:-7336999 Msa0100890:CDS
GTCGCATGAGAAGCCTTGAC+AGG 0.546192 1_3:+7339317 None:intergenic
AATTCCTTAACAGCCTGGAT+AGG 0.546382 1_3:+7338387 None:intergenic
GTTGCACGTCTTAGGTCCAT+TGG 0.547167 1_3:+7336850 None:intergenic
GTGACAGTTTCCAAGCCACC+AGG 0.548258 1_3:-7337345 Msa0100890:CDS
CTCCACAGAGCCATCTACTT+CGG 0.551057 1_3:-7334715 Msa0100890:CDS
AATGTCTTTGGCAAGAGAGA+AGG 0.551265 1_3:-7336218 Msa0100890:intron
AAGGCTTCTCATGCGACACA+TGG 0.551643 1_3:-7339311 Msa0100890:CDS
ATTCTCTGAATTTACTTGTG+AGG 0.552178 1_3:+7338338 None:intergenic
ATCCATATTGGACGGAGTTG+AGG 0.552766 1_3:+7337185 None:intergenic
AAGTAATACTACACATTGGA+AGG 0.552794 1_3:+7334277 None:intergenic
TTAAAATTTGATAGGAGTGA+CGG 0.554336 1_3:-7338809 Msa0100890:CDS
CAGGTGCATTTGCCGGATAT+AGG 0.554569 1_3:+7337058 None:intergenic
CAGGTGGCTTGAAAAGTGGC+AGG 0.557391 1_3:-7334676 Msa0100890:CDS
AACCATTATACACACATTGA+GGG 0.557674 1_3:+7334521 None:intergenic
ATAATTGTTACAGTCAATGC+AGG 0.560961 1_3:-7337496 Msa0100890:intron
CCTGTAGTTGAAGCACAACT+AGG 0.562369 1_3:+7337282 None:intergenic
ATTTGTCAAAAGGCTAACGT+TGG 0.564831 1_3:-7336275 Msa0100890:intron
CGGTATTCGCCAGTTATCTG+GGG 0.571016 1_3:-7334912 Msa0100890:CDS
TTTGGTGCTGGAATCTTCTG+TGG 0.572134 1_3:-7336706 Msa0100890:CDS
GGCGACGGTTGTGCTTGCGA+AGG 0.572382 1_3:-7336685 Msa0100890:CDS
AACGTAGGAGACAACAGTCT+TGG 0.572639 1_3:-7339079 Msa0100890:CDS
GCCAAATAGATTGAAGAAGA+GGG 0.573771 1_3:+7334393 None:intergenic
ATCTTGGGAGCAAATGCTTG+TGG 0.574082 1_3:+7336595 None:intergenic
AAAATCCTGCAACAATTGAA+GGG 0.574303 1_3:-7338706 Msa0100890:CDS
TGGATACATTTGATCGTCCA+CGG 0.575264 1_3:+7338904 None:intergenic
GAATCAGCGCAAGGGGTCAA+CGG 0.575782 1_3:+7334620 None:intergenic
AACATGCTTCTAGCAATGAA+AGG 0.575833 1_3:-7335368 Msa0100890:CDS
AACATTCTACACCAAATAGC+GGG 0.579022 1_3:+7334444 None:intergenic
GATGTATACTTGAACTTGGG+GGG 0.580200 1_3:+7340331 None:intergenic
ATACAGAATCTGTTCTGAGA+AGG 0.581595 1_3:+7334220 None:intergenic
TTACCTGGGGAAGTGAATCA+TGG 0.582239 1_3:+7338597 None:intergenic
CCGAGTATTGTGTTTCACGG+TGG 0.583708 1_3:+7339231 None:intergenic
GATTCTAAAGTCCTTTGCAA+TGG 0.584197 1_3:-7334602 Msa0100890:CDS
AGAGCAACATTGTTGAAGAA+GGG 0.586625 1_3:-7335344 Msa0100890:CDS
GACTTTAGAATCAGCGCAAG+GGG 0.586639 1_3:+7334613 None:intergenic
AGATTATCAGATGGTATACA+GGG 0.586972 1_3:-7337255 Msa0100890:CDS
TCAGAGAATATCCCACAAGA+TGG 0.588289 1_3:-7338324 Msa0100890:CDS
TAGACGCTGCCTACAATTTG+GGG 0.588410 1_3:-7337448 Msa0100890:CDS
GATTGATCATCCATATTGGA+CGG 0.592859 1_3:+7337177 None:intergenic
TGGAGTCTCGTCCTTTAAGA+GGG 0.594631 1_3:-7334151 Msa0100890:three_prime_UTR
ATAGGATCAGGCATCAATTG+AGG 0.595329 1_3:+7338405 None:intergenic
TGACAACACCGGCATCAGCT+AGG 0.595994 1_3:-7336442 Msa0100890:CDS
TTCTGTCAAGATAGGAGACT+CGG 0.595997 1_3:+7337089 None:intergenic
TCGAGGACGAGTATGATGCA+GGG 0.596094 1_3:-7340479 Msa0100890:five_prime_UTR
ATTTGAAAATTGCAGTGAGA+TGG 0.600065 1_3:-7338367 Msa0100890:CDS
TTCATCAGAAGGATTGGTGA+TGG 0.602391 1_3:+7340355 None:intergenic
ATTACCTCAGAACCATCTTG+TGG 0.602494 1_3:+7338312 None:intergenic
GGACTTTAGAATCAGCGCAA+GGG 0.602915 1_3:+7334612 None:intergenic
ATTGAGAGTTGAGGAGAGAG+AGG 0.603653 1_3:+7340388 None:intergenic
CTCAATGTGTGTATAATGGT+TGG 0.603810 1_3:-7334519 Msa0100890:three_prime_UTR
GCAACTGTTATAAACACCTC+TGG 0.607058 1_3:+7339010 None:intergenic
GGATACATTTGATCGTCCAC+GGG 0.608080 1_3:+7338905 None:intergenic
TTCTCAGCAGCCACTGCCAG+AGG 0.609773 1_3:-7339026 Msa0100890:CDS
AACTTAGATGATGAATCAGA+TGG 0.610248 1_3:-7334845 Msa0100890:CDS
GGTTGTGCTTGCGAAGGCTG+TGG 0.610748 1_3:-7336679 Msa0100890:CDS
CGAAGTAGATGGCTCTGTGG+AGG 0.611110 1_3:+7334716 None:intergenic
GTCATCATCACTAACTGAGT+CGG 0.611386 1_3:-7338843 Msa0100890:CDS
ATGATGTATACTTGAACTTG+GGG 0.612101 1_3:+7340329 None:intergenic
TCTGTAGATGAAGAACGTGT+AGG 0.614632 1_3:+7334980 None:intergenic
AGTCCTTTGCAATGGCAATG+AGG 0.616936 1_3:-7334594 Msa0100890:CDS
GCATCAGCTAGGCACAAAAG+AGG 0.618145 1_3:-7336431 Msa0100890:CDS
GTCTCCAATAAAGCCTGTCA+AGG 0.618547 1_3:-7339330 Msa0100890:CDS
TATCCCACAAGATGGTTCTG+AGG 0.620911 1_3:-7338316 Msa0100890:intron
CTATTGGAGAGTTGGTATGG+TGG 0.623132 1_3:+7334938 None:intergenic
ATTGGATCAAGCTCCTCAGG+TGG 0.623354 1_3:-7334692 Msa0100890:CDS
AATCCTCATTGCCATTGCAA+AGG 0.624686 1_3:+7334591 None:intergenic
CGCGGAGACTTGAATACGAG+AGG 0.625882 1_3:+7339266 None:intergenic
TATAAAGTAATACTACACAT+TGG 0.626331 1_3:+7334273 None:intergenic
AGGACTTTAGAATCAGCGCA+AGG 0.627509 1_3:+7334611 None:intergenic
TCAGCGCAAGGGGTCAACGG+CGG 0.628739 1_3:+7334623 None:intergenic
TCTTATACCATATTATTCAG+TGG 0.629452 1_3:+7336550 None:intergenic
CAAATGCACCTGATAAGAGG+AGG 0.630195 1_3:-7337047 Msa0100890:CDS
CTTATTACTTCCAAGAACAA+CGG 0.633004 1_3:+7337416 None:intergenic
ACAAGTACTGATGATGCCAA+TGG 0.639150 1_3:-7336866 Msa0100890:CDS
CTTCATCTACAGAAAATGAG+TGG 0.639866 1_3:-7334970 Msa0100890:CDS
GTGAAACACAATACTCGGAA+AGG 0.645194 1_3:-7339226 Msa0100890:intron
AAATCCTGCAACAATTGAAG+GGG 0.646037 1_3:-7338705 Msa0100890:CDS
AGGCTTCTCATGCGACACAT+GGG 0.646230 1_3:-7339310 Msa0100890:CDS
GAGTATTGTGTTTCACGGTG+GGG 0.646389 1_3:+7339233 None:intergenic
ATCAGAAGGATTGGTGATGG+CGG 0.649908 1_3:+7340358 None:intergenic
GGTACGCCCCACAGATGCTG+AGG 0.649944 1_3:-7337025 Msa0100890:CDS
GGTGGCGGCATTGAGAGTTG+AGG 0.650716 1_3:+7340379 None:intergenic
TCGACTGGATGTCGATGTGA+TGG 0.651749 1_3:-7336248 Msa0100890:CDS
GAAACATCTCAAAGTAACGT+AGG 0.652192 1_3:-7339094 Msa0100890:CDS
AGTGGAACATCAGCTGCACA+TGG 0.663360 1_3:+7336568 None:intergenic
TGATGTATACTTGAACTTGG+GGG 0.665983 1_3:+7340330 None:intergenic
AATGGAACAATCTACTGATG+CGG 0.671669 1_3:-7338870 Msa0100890:CDS
TACCAACTCTCCAATAGATG+CGG 0.673526 1_3:-7334932 Msa0100890:CDS
CGGTGGGGAGCACTGATACG+CGG 0.675366 1_3:+7339248 None:intergenic
AAATGCACCTGATAAGAGGA+GGG 0.675925 1_3:-7337046 Msa0100890:CDS
ATTTGCCGGATATAGGTCGA+TGG 0.681858 1_3:+7337065 None:intergenic
AAACATTCTACACCAAATAG+CGG 0.685950 1_3:+7334443 None:intergenic
GGTATTCGCCAGTTATCTGG+GGG 0.691155 1_3:-7334911 Msa0100890:CDS
ACAGGTGTGAGATTATCAGA+TGG 0.691185 1_3:-7337264 Msa0100890:CDS
TCTAAGTAGCCTAATTAACA+CGG 0.691450 1_3:+7334124 None:intergenic
AAATGCAACCCAATGCCTGG+TGG 0.691964 1_3:+7337330 None:intergenic
GGAGACTTGAATACGAGAGG+TGG 0.694779 1_3:+7339269 None:intergenic
AGATGTGAATATGACAACAC+CGG 0.696103 1_3:-7336453 Msa0100890:CDS
TTTGCATATAGTGGAAAACG+TGG 0.696559 1_3:-7337214 Msa0100890:CDS
TGAATTCCTCAGCATCTGTG+GGG 0.698955 1_3:+7337019 None:intergenic
ATCCGAAGTAGATGGCTCTG+TGG 0.709057 1_3:+7334713 None:intergenic
ACAATGGTGTTACAGGTGAG+AGG 0.709448 1_3:+7335250 None:intergenic
AAATAGATTGAAGAAGAGGG+AGG 0.711927 1_3:+7334396 None:intergenic
GAATGTGCCAGACTGCTGCG+TGG 0.712112 1_3:+7335031 None:intergenic
GTTATAGGGAAATCGAATCG+AGG 0.718394 1_3:-7340496 Msa0100890:five_prime_UTR
GTAGTTGAAGCACAACTAGG+TGG 0.726466 1_3:+7337285 None:intergenic
TATTCATCGACAGATGCTGG+AGG 0.729564 1_3:+7338938 None:intergenic
GATTATCAGATGGTATACAG+GGG 0.764872 1_3:-7337254 Msa0100890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTATATTAAAATTTGAT+AGG - chr1_3:7335852-7335871 Msa0100890:intron 10.0%
!!! TATTTTAAATATTTGTCAAA+AGG - chr1_3:7338384-7338403 Msa0100890:CDS 10.0%
!!! AAATACAATAACATAATTTT+TGG - chr1_3:7338941-7338960 Msa0100890:CDS 10.0%
!!! TTCTGTATATTTTATATTTT+TGG - chr1_3:7340464-7340483 Msa0100890:five_prime_UTR 10.0%
!!! TCTGTATATTTTATATTTTT+GGG - chr1_3:7340465-7340484 Msa0100890:five_prime_UTR 10.0%
!! ACACAATAAATGAAATAAAA+TGG + chr1_3:7334548-7334567 None:intergenic 15.0%
!! TTTCACAAGAAAATAAAAAA+AGG - chr1_3:7334722-7334741 Msa0100890:CDS 15.0%
!! TATATTTATAATGCTGATAT+AGG - chr1_3:7336118-7336137 Msa0100890:intron 15.0%
!! ATATTTATAATGCTGATATA+GGG - chr1_3:7336119-7336138 Msa0100890:intron 15.0%
!!! TAATTGATTTTTTTTCTTTC+AGG - chr1_3:7336376-7336395 Msa0100890:intron 15.0%
!!! CTTTTAGTTTTTTTAATCAT+TGG - chr1_3:7336562-7336581 Msa0100890:CDS 15.0%
!!! AAATATCACCTAATTTTTTA+AGG + chr1_3:7338177-7338196 None:intergenic 15.0%
!!! TTTGTTTTAAAAGAAGTATT+AGG - chr1_3:7338808-7338827 Msa0100890:CDS 15.0%
!!! GAAATTTTAGAAACTAAATT+GGG + chr1_3:7338902-7338921 None:intergenic 15.0%
!!! AGAAATTTTAGAAACTAAAT+TGG + chr1_3:7338903-7338922 None:intergenic 15.0%
!! AATTATGTTATTGTATTTCA+GGG + chr1_3:7338939-7338958 None:intergenic 15.0%
!! AAATTATGTTATTGTATTTC+AGG + chr1_3:7338940-7338959 None:intergenic 15.0%
!!! AGCAATTTTTCTTAAATTTT+AGG - chr1_3:7339095-7339114 Msa0100890:CDS 15.0%
!!! GCAATTTTTCTTAAATTTTA+GGG - chr1_3:7339096-7339115 Msa0100890:CDS 15.0%
!!! CAATTTTTCTTAAATTTTAG+GGG - chr1_3:7339097-7339116 Msa0100890:CDS 15.0%
!! TCTTTACGATTATTATGTTA+TGG - chr1_3:7334445-7334464 Msa0100890:three_prime_UTR 20.0%
!! TTTGCATCAAAATGAATATA+AGG - chr1_3:7334650-7334669 Msa0100890:CDS 20.0%
!! TATAAGGTTATCAATTAGAT+CGG - chr1_3:7334666-7334685 Msa0100890:CDS 20.0%
!!! TTGAACAAAATGCTATTTTT+CGG + chr1_3:7334792-7334811 None:intergenic 20.0%
!! TGGAATTATATTTGTTTGAT+TGG - chr1_3:7334996-7335015 Msa0100890:CDS 20.0%
!! CATTAAAATGCTTATCAATT+AGG - chr1_3:7335089-7335108 Msa0100890:CDS 20.0%
!! AAAAGTCAGCAATAATTTAT+TGG - chr1_3:7337006-7337025 Msa0100890:CDS 20.0%
!!! ATGCAATATTTGGTAATATT+TGG + chr1_3:7337764-7337783 None:intergenic 20.0%
!!! ATTTAGAGCATATAGAAATA+TGG + chr1_3:7338330-7338349 None:intergenic 20.0%
!! AAAAAATATATTAGCAGACA+CGG + chr1_3:7338360-7338379 None:intergenic 20.0%
!!! ATAATTTTTGGTACTTCTTT+TGG - chr1_3:7338953-7338972 Msa0100890:CDS 20.0%
!!! CATATGTATTCATTTTAATG+TGG + chr1_3:7339000-7339019 None:intergenic 20.0%
!! CACATTAAAATGAATACATA+TGG - chr1_3:7338998-7339017 Msa0100890:CDS 20.0%
!! AAATAAATTCCTATAACATG+TGG + chr1_3:7339025-7339044 None:intergenic 20.0%
!!! TTTTTTAAATGCAGATTTTG+TGG - chr1_3:7339272-7339291 Msa0100890:CDS 20.0%
!! ATTCATACAATAAGTAATCT+GGG + chr1_3:7340342-7340361 None:intergenic 20.0%
!! TATAAAGTAATACTACACAT+TGG + chr1_3:7340399-7340418 None:intergenic 20.0%
!!! CATTATTGAGTTGAGTTATA+GGG - chr1_3:7334159-7334178 Msa0100890:three_prime_UTR 25.0%
! AATGATGTATACTTGAACTT+GGG + chr1_3:7334344-7334363 None:intergenic 25.0%
! AAATGATGTATACTTGAACT+TGG + chr1_3:7334345-7334364 None:intergenic 25.0%
! GGGTAGCATAATTAATTAAT+TGG + chr1_3:7334378-7334397 None:intergenic 25.0%
! TTTATTGTGTTAGACATGTT+TGG - chr1_3:7334558-7334577 Msa0100890:exon 25.0%
! AATGGAATGAAACAAAAAGT+AGG + chr1_3:7334604-7334623 None:intergenic 25.0%
! GTTCAAATTCTACTATGTTA+CGG - chr1_3:7334806-7334825 Msa0100890:CDS 25.0%
! TACAATGCAATGTCAAATAA+CGG + chr1_3:7334834-7334853 None:intergenic 25.0%
! TGACAAAATTTGTATGTATC+AGG - chr1_3:7335525-7335544 Msa0100890:intron 25.0%
!! TGTTTCTGTATCTGATAAAT+GGG + chr1_3:7335561-7335580 None:intergenic 25.0%
!! ATGTTTCTGTATCTGATAAA+TGG + chr1_3:7335562-7335581 None:intergenic 25.0%
! TTAAAATTTGATAGGAGTGA+CGG - chr1_3:7335860-7335879 Msa0100890:intron 25.0%
! AAAGTTCATATATTCATCAG+AGG + chr1_3:7336413-7336432 None:intergenic 25.0%
! ATAAACAAAATCATTCAGAG+AGG + chr1_3:7336470-7336489 None:intergenic 25.0%
!!! TCATTGATCTAGTTTGTTTA+TGG - chr1_3:7336671-7336690 Msa0100890:CDS 25.0%
! TTTAACAAAATTAGCAGAAG+TGG - chr1_3:7336722-7336741 Msa0100890:CDS 25.0%
! AACTTGATAAGCAGAAAAAT+GGG + chr1_3:7336810-7336829 None:intergenic 25.0%
! AAACTTGATAAGCAGAAAAA+TGG + chr1_3:7336811-7336830 None:intergenic 25.0%
!!! TTATCAAGTTTTGCTTTGTT+TGG - chr1_3:7336820-7336839 Msa0100890:intron 25.0%
! ATGCAAACTTATAGAAGATT+TGG + chr1_3:7337442-7337461 None:intergenic 25.0%
! TTCTATAAGTTTGCATATAG+TGG - chr1_3:7337446-7337465 Msa0100890:CDS 25.0%
! AAAAGATTGATCATCCATAT+TGG + chr1_3:7337499-7337518 None:intergenic 25.0%
! ATATAGAGCAATGCAATATT+TGG + chr1_3:7337774-7337793 None:intergenic 25.0%
! AATATTGCATTGCTCTATAT+AGG - chr1_3:7337774-7337793 Msa0100890:intron 25.0%
! ATTGCATATCATAGAAAGTA+AGG + chr1_3:7337899-7337918 None:intergenic 25.0%
!! AAAATACTGTGAATGTTTTC+AGG - chr1_3:7338291-7338310 Msa0100890:intron 25.0%
!! TAAATGTTATGGATTGATGT+TGG - chr1_3:7338548-7338567 Msa0100890:intron 25.0%
!! AAATGTTATGGATTGATGTT+GGG - chr1_3:7338549-7338568 Msa0100890:intron 25.0%
! AAAAACTTAAAAGTTGTGCT+GGG + chr1_3:7338628-7338647 None:intergenic 25.0%
! AAAAAACTTAAAAGTTGTGC+TGG + chr1_3:7338629-7338648 None:intergenic 25.0%
! TATAGGAATTTATTTCAGCA+TGG - chr1_3:7339030-7339049 Msa0100890:CDS 25.0%
! TTTAAAAAAAGGGGTCATTT+GGG + chr1_3:7340311-7340330 None:intergenic 25.0%
!! GAACCTTTGTTTAAAAAAAG+GGG + chr1_3:7340320-7340339 None:intergenic 25.0%
!! GGAACCTTTGTTTAAAAAAA+GGG + chr1_3:7340321-7340340 None:intergenic 25.0%
! GATTCATACAATAAGTAATC+TGG + chr1_3:7340343-7340362 None:intergenic 25.0%
!! GCATTATTGAGTTGAGTTAT+AGG - chr1_3:7334158-7334177 Msa0100890:three_prime_UTR 30.0%
ATGATGTATACTTGAACTTG+GGG + chr1_3:7334343-7334362 None:intergenic 30.0%
! AGACAATGTTGTTTGATGAA+TGG + chr1_3:7334622-7334641 None:intergenic 30.0%
AGAATATTGTTCCAGAGATA+TGG + chr1_3:7334864-7334883 None:intergenic 30.0%
AACAGTCAATTATCAAAGTG+CGG + chr1_3:7334962-7334981 None:intergenic 30.0%
!! AAATTCACTAGACTTGCTTT+TGG - chr1_3:7335022-7335041 Msa0100890:CDS 30.0%
TGGGTTAATTAACATAAGAG+AGG + chr1_3:7335053-7335072 None:intergenic 30.0%
ACATCTCTGAACAAAAAAGA+CGG + chr1_3:7335164-7335183 None:intergenic 30.0%
!! CATTTCTAGTATCACGAAAA+AGG - chr1_3:7335248-7335267 Msa0100890:CDS 30.0%
! GTGTTGACAAATCTCAAAAA+GGG + chr1_3:7335316-7335335 None:intergenic 30.0%
!! AGTGTTGACAAATCTCAAAA+AGG + chr1_3:7335317-7335336 None:intergenic 30.0%
ATATTAGATTCCTCCAACAA+AGG + chr1_3:7335914-7335933 None:intergenic 30.0%
TTTGTTGGAGGAATCTAATA+TGG - chr1_3:7335913-7335932 Msa0100890:intron 30.0%
TTGTTGGAGGAATCTAATAT+GGG - chr1_3:7335914-7335933 Msa0100890:intron 30.0%
AAAATCCTGCAACAATTGAA+GGG - chr1_3:7335963-7335982 Msa0100890:intron 30.0%
ATTTGAAAATTGCAGTGAGA+TGG - chr1_3:7336302-7336321 Msa0100890:intron 30.0%
ATTCTCTGAATTTACTTGTG+AGG + chr1_3:7336334-7336353 None:intergenic 30.0%
! CTAAATACTAGTCTCTTTAG+AGG - chr1_3:7336515-7336534 Msa0100890:intron 30.0%
!! ACATGTATTTTGTTTGCACT+TGG - chr1_3:7336618-7336637 Msa0100890:CDS 30.0%
! TGCATATTTCTGCATAAGAT+AGG - chr1_3:7336750-7336769 Msa0100890:intron 30.0%
ACTTGATAAGCAGAAAAATG+GGG + chr1_3:7336809-7336828 None:intergenic 30.0%
! GCAATAATTTATTGGCTACA+AGG - chr1_3:7337014-7337033 Msa0100890:CDS 30.0%
!!! AGAGTTGCATTTTGATTATC+AGG - chr1_3:7337100-7337119 Msa0100890:CDS 30.0%
ATAATTGTTACAGTCAATGC+AGG - chr1_3:7337173-7337192 Msa0100890:CDS 30.0%
CTTATTACTTCCAAGAACAA+CGG + chr1_3:7337256-7337275 None:intergenic 30.0%
AGATTATCAGATGGTATACA+GGG - chr1_3:7337414-7337433 Msa0100890:CDS 30.0%
!! CATGATAACTAACTTTTTCC+TGG + chr1_3:7337691-7337710 None:intergenic 30.0%
GTTATCATGATCTTTCTCAT+AGG - chr1_3:7337702-7337721 Msa0100890:intron 30.0%
ATTTGGTAAAACTAGCAAAC+AGG + chr1_3:7337747-7337766 None:intergenic 30.0%
TCTGGTCAGTATAAATGTTA+TGG - chr1_3:7338537-7338556 Msa0100890:intron 30.0%
ACCAAATACTAGTCCTTATA+AGG - chr1_3:7338585-7338604 Msa0100890:intron 30.0%
! TCCTTATAAGGACTAGTATT+TGG + chr1_3:7338589-7338608 None:intergenic 30.0%
! CCTCAACAATTTTCCTTATA+AGG + chr1_3:7338601-7338620 None:intergenic 30.0%
CCTTATAAGGAAAATTGTTG+AGG - chr1_3:7338598-7338617 Msa0100890:intron 30.0%
!! TAAATTTTAGGGGTTCAAAC+TGG - chr1_3:7339107-7339126 Msa0100890:CDS 30.0%
AACTTAGATGATGAATCAGA+TGG - chr1_3:7339824-7339843 Msa0100890:intron 30.0%
AACCATTATACACACATTGA+GGG + chr1_3:7340151-7340170 None:intergenic 30.0%
!!! TTTTTTTTCTTCCCGCTATT+TGG - chr1_3:7340214-7340233 Msa0100890:intron 30.0%
AAACATTCTACACCAAATAG+CGG + chr1_3:7340229-7340248 None:intergenic 30.0%
!!! CTATTTGGTGTAGAATGTTT+TGG - chr1_3:7340229-7340248 Msa0100890:intron 30.0%
GTTTAAAAAAAGGGGTCATT+TGG + chr1_3:7340312-7340331 None:intergenic 30.0%
!!! TGACCCCTTTTTTTAAACAA+AGG - chr1_3:7340314-7340333 Msa0100890:intron 30.0%
! GGGAACCTTTGTTTAAAAAA+AGG + chr1_3:7340322-7340341 None:intergenic 30.0%
AAGTAATACTACACATTGGA+AGG + chr1_3:7340395-7340414 None:intergenic 30.0%
TTCTTAATCTGAGAAGCTTC+TGG + chr1_3:7334247-7334266 None:intergenic 35.0%
TGATGTATACTTGAACTTGG+GGG + chr1_3:7334342-7334361 None:intergenic 35.0%
ACTCTGTCTGTCTTTATGTT+TGG - chr1_3:7334500-7334519 Msa0100890:three_prime_UTR 35.0%
TGATTCTTAGATCCTTAGAC+CGG - chr1_3:7334690-7334709 Msa0100890:CDS 35.0%
TCTTGTGAAAACTCAGTATC+CGG + chr1_3:7334712-7334731 None:intergenic 35.0%
TGTACTGAATACCATATCTC+TGG - chr1_3:7334850-7334869 Msa0100890:CDS 35.0%
ATGCAAAAATGAGACAGTGT+GGG + chr1_3:7335072-7335091 None:intergenic 35.0%
AATGCAAAAATGAGACAGTG+TGG + chr1_3:7335073-7335092 None:intergenic 35.0%
! TTTCCGAGTATTGTGTTTCA+CGG + chr1_3:7335444-7335463 None:intergenic 35.0%
TTTGTATGTATCAGGCTTGA+AGG - chr1_3:7335533-7335552 Msa0100890:intron 35.0%
GAAACATCTCAAAGTAACGT+AGG - chr1_3:7335575-7335594 Msa0100890:intron 35.0%
AAATATTCATCGACAGATGC+TGG + chr1_3:7335737-7335756 None:intergenic 35.0%
AGCATCTGTCGATGAATATT+TGG - chr1_3:7335736-7335755 Msa0100890:intron 35.0%
CAGTAGATTGTTCCATTTCT+GGG + chr1_3:7335796-7335815 None:intergenic 35.0%
TCAGTAGATTGTTCCATTTC+TGG + chr1_3:7335797-7335816 None:intergenic 35.0%
AATGGAACAATCTACTGATG+CGG - chr1_3:7335799-7335818 Msa0100890:intron 35.0%
AGTTCTTCTGCTATGTTACT+AGG + chr1_3:7335887-7335906 None:intergenic 35.0%
! AGAAGAACTTTTGCCTTTGT+TGG - chr1_3:7335898-7335917 Msa0100890:intron 35.0%
CTAATATGGGTCATCAAGAA+AGG - chr1_3:7335927-7335946 Msa0100890:intron 35.0%
GAAAATCCTGCAACAATTGA+AGG - chr1_3:7335962-7335981 Msa0100890:intron 35.0%
AAATCCTGCAACAATTGAAG+GGG - chr1_3:7335964-7335983 Msa0100890:intron 35.0%
ACAATTGAAGGGGAGAAAAA+TGG - chr1_3:7335974-7335993 Msa0100890:intron 35.0%
GATCAATCAAAAGAGACTAG+AGG + chr1_3:7336185-7336204 None:intergenic 35.0%
TTTCAAATTCCTTAACAGCC+TGG + chr1_3:7336290-7336309 None:intergenic 35.0%
ACAAAATCATTCAGAGAGGA+GGG + chr1_3:7336466-7336485 None:intergenic 35.0%
AACAAAATCATTCAGAGAGG+AGG + chr1_3:7336467-7336486 None:intergenic 35.0%
! ACTAAAAGTGTATTCAAGCC+TGG + chr1_3:7336550-7336569 None:intergenic 35.0%
GTACTGTGCTCTTCTTTAAT+TGG + chr1_3:7336600-7336619 None:intergenic 35.0%
TTGATAAGCAGAAAAATGGG+GGG + chr1_3:7336807-7336826 None:intergenic 35.0%
CTTGATAAGCAGAAAAATGG+GGG + chr1_3:7336808-7336827 None:intergenic 35.0%
!!! TCAAGTTTTGCTTTGTTTGG+AGG - chr1_3:7336823-7336842 Msa0100890:intron 35.0%
GTTTGGAGGTTTCAAAATTG+TGG - chr1_3:7336837-7336856 Msa0100890:CDS 35.0%
TGAGTCCATGATGTAATATC+AGG + chr1_3:7336913-7336932 None:intergenic 35.0%
GATATTACATCATGGACTCA+AGG - chr1_3:7336913-7336932 Msa0100890:intron 35.0%
!! CTACAAGGTTTTAGTCATGT+AGG - chr1_3:7337029-7337048 Msa0100890:CDS 35.0%
GTGTAATGGCATTATCTACT+TGG - chr1_3:7337066-7337085 Msa0100890:CDS 35.0%
AACTTCAAGCAACGCAAAAA+TGG - chr1_3:7337296-7337315 Msa0100890:CDS 35.0%
GAGATTATCAGATGGTATAC+AGG - chr1_3:7337413-7337432 Msa0100890:CDS 35.0%
GATTATCAGATGGTATACAG+GGG - chr1_3:7337415-7337434 Msa0100890:CDS 35.0%
! TTTGCATATAGTGGAAAACG+TGG - chr1_3:7337455-7337474 Msa0100890:CDS 35.0%
GATTGATCATCCATATTGGA+CGG + chr1_3:7337495-7337514 None:intergenic 35.0%
!! GATAACTAACTTTTTCCTGG+AGG + chr1_3:7337688-7337707 None:intergenic 35.0%
! TGCAGTTACTGTGATTGTTT+TGG - chr1_3:7337945-7337964 Msa0100890:intron 35.0%
TGGTAACAGAGTAGAATTTC+AGG - chr1_3:7338010-7338029 Msa0100890:intron 35.0%
!!! CCTAATTTTTTAAGGCTAGC+AGG + chr1_3:7338169-7338188 None:intergenic 35.0%
!! CCTGCTAGCCTTAAAAAATT+AGG - chr1_3:7338166-7338185 Msa0100890:intron 35.0%
!!! TATTTTGATGTGACCTTTGC+AGG - chr1_3:7338192-7338211 Msa0100890:intron 35.0%
ATATTCACATCTTCCTGCAA+AGG + chr1_3:7338208-7338227 None:intergenic 35.0%
AGATGTGAATATGACAACAC+CGG - chr1_3:7338216-7338235 Msa0100890:intron 35.0%
AAAGAGGTTGCAATTGCAAA+AGG - chr1_3:7338254-7338273 Msa0100890:intron 35.0%
ATTTGTCAAAAGGCTAACGT+TGG - chr1_3:7338394-7338413 Msa0100890:CDS 35.0%
GATGGATGTATGAATGTCTT+TGG - chr1_3:7338439-7338458 Msa0100890:CDS 35.0%
!! ACACAGTTTAACTTGTTGTC+TGG - chr1_3:7338519-7338538 Msa0100890:intron 35.0%
ACATATGGTCCACATGTTAT+AGG - chr1_3:7339013-7339032 Msa0100890:CDS 35.0%
TGAGAGACTAAACTGAAAGT+TGG - chr1_3:7339141-7339160 Msa0100890:intron 35.0%
!! CTGAAAGTTGGTGTGAATTA+CGG - chr1_3:7339153-7339172 Msa0100890:intron 35.0%
TATAGTTGACATCCACATGA+GGG - chr1_3:7339203-7339222 Msa0100890:intron 35.0%
! AAATGCAGATTTTGTGGCAA+TGG - chr1_3:7339278-7339297 Msa0100890:CDS 35.0%
AACATGCTTCTAGCAATGAA+AGG - chr1_3:7339301-7339320 Msa0100890:CDS 35.0%
ACATGCTTCTAGCAATGAAA+GGG - chr1_3:7339302-7339321 Msa0100890:CDS 35.0%
AGAGCAACATTGTTGAAGAA+GGG - chr1_3:7339325-7339344 Msa0100890:CDS 35.0%
ACAAATGCAAAAAGGCCAAT+CGG + chr1_3:7339550-7339569 None:intergenic 35.0%
!!! GCGTGGTTTTTTAGAAGATT+TGG + chr1_3:7339624-7339643 None:intergenic 35.0%
CTTCATCTACAGAAAATGAG+TGG - chr1_3:7339699-7339718 Msa0100890:intron 35.0%
TGAAACACCTGATGTATTGA+AGG - chr1_3:7339871-7339890 Msa0100890:intron 35.0%
TTTGCTTTCACAGACTTGAT+GGG + chr1_3:7339908-7339927 None:intergenic 35.0%
ATTTGCTTTCACAGACTTGA+TGG + chr1_3:7339909-7339928 None:intergenic 35.0%
!! GATTCTAAAGTCCTTTGCAA+TGG - chr1_3:7340067-7340086 Msa0100890:intron 35.0%
CAACCATTATACACACATTG+AGG + chr1_3:7340152-7340171 None:intergenic 35.0%
CTCAATGTGTGTATAATGGT+TGG - chr1_3:7340150-7340169 Msa0100890:intron 35.0%
AACATTCTACACCAAATAGC+GGG + chr1_3:7340228-7340247 None:intergenic 35.0%
AAATAGATTGAAGAAGAGGG+AGG + chr1_3:7340276-7340295 None:intergenic 35.0%
TCCCTCTTCTTCAATCTATT+TGG - chr1_3:7340275-7340294 Msa0100890:intron 35.0%
GCCAAATAGATTGAAGAAGA+GGG + chr1_3:7340279-7340298 None:intergenic 35.0%
TGCCAAATAGATTGAAGAAG+AGG + chr1_3:7340280-7340299 None:intergenic 35.0%
CTTCAATCTATTTGGCAAAC+AGG - chr1_3:7340283-7340302 Msa0100890:intron 35.0%
!! ATACAGAATCTGTTCTGAGA+AGG + chr1_3:7340452-7340471 None:intergenic 35.0%
GTTATAGGGAAATCGAATCG+AGG - chr1_3:7334173-7334192 Msa0100890:three_prime_UTR 40.0%
GTGAACAGTTCTTCTTCTGA+TGG - chr1_3:7334216-7334235 Msa0100890:three_prime_UTR 40.0%
! TTCATCAGAAGGATTGGTGA+TGG + chr1_3:7334317-7334336 None:intergenic 40.0%
GATGTATACTTGAACTTGGG+GGG + chr1_3:7334341-7334360 None:intergenic 40.0%
TGTCAAGAACCCCAATCAAA+GGG + chr1_3:7334402-7334421 None:intergenic 40.0%
AAAACTCAGTATCCGGTCTA+AGG + chr1_3:7334705-7334724 None:intergenic 40.0%
TTAATCAATGTTGTCCGTCG+TGG - chr1_3:7334763-7334782 Msa0100890:CDS 40.0%
!! CTATTTTTCGGAATCCACGA+CGG + chr1_3:7334780-7334799 None:intergenic 40.0%
AACACAGCACTGTCAAATAG+TGG + chr1_3:7334899-7334918 None:intergenic 40.0%
GCTGTGTTCATGTACTTAAG+AGG - chr1_3:7334911-7334930 Msa0100890:CDS 40.0%
! ACTGTTGTGAGAGACTTGTT+TGG - chr1_3:7334976-7334995 Msa0100890:CDS 40.0%
ATTAGGCGTTTGTGCATTGT+CGG - chr1_3:7335106-7335125 Msa0100890:intron 40.0%
CTTGTCGTCTTCTTCATTTC+AGG - chr1_3:7335285-7335304 Msa0100890:CDS 40.0%
GTGAAACACAATACTCGGAA+AGG - chr1_3:7335443-7335462 Msa0100890:intron 40.0%
GCAACTGTTATAAACACCTC+TGG + chr1_3:7335662-7335681 None:intergenic 40.0%
TGGATACATTTGATCGTCCA+CGG + chr1_3:7335768-7335787 None:intergenic 40.0%
AACAATCTACTGATGCGGTT+GGG - chr1_3:7335804-7335823 Msa0100890:intron 40.0%
GTCATCATCACTAACTGAGT+CGG - chr1_3:7335826-7335845 Msa0100890:intron 40.0%
! AGAACTTTTGCCTTTGTTGG+AGG - chr1_3:7335901-7335920 Msa0100890:intron 40.0%
! GGAGAAAAATGGTGCTGAAT+TGG - chr1_3:7335985-7336004 Msa0100890:intron 40.0%
! TCTCAAGAGCGCATAAACTT+AGG - chr1_3:7336010-7336029 Msa0100890:intron 40.0%
ATAAACTTAGGCTCGAGTTC+AGG - chr1_3:7336022-7336041 Msa0100890:intron 40.0%
AATTTCAAGCTTCAGTGTGC+AGG - chr1_3:7336210-7336229 Msa0100890:intron 40.0%
ATAGGATCAGGCATCAATTG+AGG + chr1_3:7336267-7336286 None:intergenic 40.0%
AATTCCTTAACAGCCTGGAT+AGG + chr1_3:7336285-7336304 None:intergenic 40.0%
TCAGAGAATATCCCACAAGA+TGG - chr1_3:7336345-7336364 Msa0100890:intron 40.0%
TTACCTCAGAACCATCTTGT+GGG + chr1_3:7336359-7336378 None:intergenic 40.0%
ATTACCTCAGAACCATCTTG+TGG + chr1_3:7336360-7336379 None:intergenic 40.0%
! CTTTAGAGGTTAATGACTCC+AGG - chr1_3:7336529-7336548 Msa0100890:intron 40.0%
CGAGTCCTGATATTACATCA+TGG - chr1_3:7336905-7336924 Msa0100890:intron 40.0%
ACATCATGGACTCAAGGTTA+AGG - chr1_3:7336919-7336938 Msa0100890:intron 40.0%
CATCATGGACTCAAGGTTAA+GGG - chr1_3:7336920-7336939 Msa0100890:intron 40.0%
!! CAAGGTTAAGGGCATTTCTA+AGG - chr1_3:7336931-7336950 Msa0100890:intron 40.0%
ATGAGACTACAGTGGTGTAA+TGG - chr1_3:7337052-7337071 Msa0100890:CDS 40.0%
TACGGATGCCATGATACTTT+AGG + chr1_3:7337203-7337222 None:intergenic 40.0%
TTTAAATGCAACCCAATGCC+TGG + chr1_3:7337345-7337364 None:intergenic 40.0%
ACAGGTGTGAGATTATCAGA+TGG - chr1_3:7337405-7337424 Msa0100890:CDS 40.0%
! CTACTGAAGCATCAGTTTCA+TGG + chr1_3:7337542-7337561 None:intergenic 40.0%
TTCTGTCAAGATAGGAGACT+CGG + chr1_3:7337583-7337602 None:intergenic 40.0%
! TCGATGGATTCTGTCAAGAT+AGG + chr1_3:7337591-7337610 None:intergenic 40.0%
AGAATCCATCGACCTATATC+CGG - chr1_3:7337599-7337618 Msa0100890:intron 40.0%
AAATGCACCTGATAAGAGGA+GGG - chr1_3:7337623-7337642 Msa0100890:intron 40.0%
TTGAATTCCTCAGCATCTGT+GGG + chr1_3:7337654-7337673 None:intergenic 40.0%
!! ACAAGTACTGATGATGCCAA+TGG - chr1_3:7337803-7337822 Msa0100890:intron 40.0%
TTCTTACAGTTGCACGTCTT+AGG + chr1_3:7337830-7337849 None:intergenic 40.0%
!!! TACTGTGATTGTTTTGGTGC+TGG - chr1_3:7337951-7337970 Msa0100890:intron 40.0%
! AGCAAATGCTTGTGGATTAC+GGG + chr1_3:7338069-7338088 None:intergenic 40.0%
! GAGCAAATGCTTGTGGATTA+CGG + chr1_3:7338070-7338089 None:intergenic 40.0%
AATGTCTTTGGCAAGAGAGA+AGG - chr1_3:7338451-7338470 Msa0100890:intron 40.0%
! TGTTATGGATTGATGTTGGG+AGG - chr1_3:7338552-7338571 Msa0100890:intron 40.0%
TACTGGCAGCATAAAGCAAA+GGG + chr1_3:7338754-7338773 None:intergenic 40.0%
TTACTGGCAGCATAAAGCAA+AGG + chr1_3:7338755-7338774 None:intergenic 40.0%
GTATAGTTGACATCCACATG+AGG - chr1_3:7339202-7339221 Msa0100890:intron 40.0%
ATAGTTGACATCCACATGAG+GGG - chr1_3:7339204-7339223 Msa0100890:intron 40.0%
GAGAGCAACATTGTTGAAGA+AGG - chr1_3:7339324-7339343 Msa0100890:CDS 40.0%
CAACATTGTTGAAGAAGGGT+TGG - chr1_3:7339329-7339348 Msa0100890:CDS 40.0%
TGGATGACAAACTGCACAAA+AGG - chr1_3:7339349-7339368 Msa0100890:CDS 40.0%
GGCAGAAAATTGTGACAATC+AGG - chr1_3:7339370-7339389 Msa0100890:intron 40.0%
!! CATTGCAACAATGGTGTTAC+AGG + chr1_3:7339429-7339448 None:intergenic 40.0%
!! TACTCAGAGCATTGCAACAA+TGG + chr1_3:7339438-7339457 None:intergenic 40.0%
TTGGCTGGACAAATGCAAAA+AGG + chr1_3:7339558-7339577 None:intergenic 40.0%
! TTTTTGCATTTGTCCAGCCA+AGG - chr1_3:7339557-7339576 Msa0100890:intron 40.0%
TCTGTAGATGAAGAACGTGT+AGG + chr1_3:7339692-7339711 None:intergenic 40.0%
!! CATCTATTGGAGAGTTGGTA+TGG + chr1_3:7339737-7339756 None:intergenic 40.0%
TACCAACTCTCCAATAGATG+CGG - chr1_3:7339737-7339756 Msa0100890:intron 40.0%
ATCATCTAAGTTAGCGCTTG+GGG + chr1_3:7339816-7339835 None:intergenic 40.0%
CATCATCTAAGTTAGCGCTT+GGG + chr1_3:7339817-7339836 None:intergenic 40.0%
TCATCATCTAAGTTAGCGCT+TGG + chr1_3:7339818-7339837 None:intergenic 40.0%
GAAGCTTCCTTCAATACATC+AGG + chr1_3:7339881-7339900 None:intergenic 40.0%
! GGAGAAACTCTCTTTTGGAT+TGG + chr1_3:7339935-7339954 None:intergenic 40.0%
TTGATCCAATCCGAAGTAGA+TGG + chr1_3:7339967-7339986 None:intergenic 40.0%
AATCCTCATTGCCATTGCAA+AGG + chr1_3:7340081-7340100 None:intergenic 40.0%
TTGCAATGGCAATGAGGATT+CGG - chr1_3:7340081-7340100 Msa0100890:intron 40.0%
! GAGGGCAATATTTTGCTTTC+AGG + chr1_3:7340133-7340152 None:intergenic 40.0%
TGCCCTCAATGTGTGTATAA+TGG - chr1_3:7340146-7340165 Msa0100890:intron 40.0%
ATAATGGTTGGCATCTTGTC+TGG - chr1_3:7340162-7340181 Msa0100890:intron 40.0%
TGCTGTTCCATATGCTCAAA+TGG - chr1_3:7340498-7340517 Msa0100890:five_prime_UTR 40.0%
ATTGAGAGTTGAGGAGAGAG+AGG + chr1_3:7334284-7334303 None:intergenic 45.0%
!! ATCAGAAGGATTGGTGATGG+CGG + chr1_3:7334314-7334333 None:intergenic 45.0%
TCAAGAACCCCAATCAAAGG+GGG + chr1_3:7334400-7334419 None:intergenic 45.0%
GTCAAGAACCCCAATCAAAG+GGG + chr1_3:7334401-7334420 None:intergenic 45.0%
GTGTCAAGAACCCCAATCAA+AGG + chr1_3:7334403-7334422 None:intergenic 45.0%
! TTTTACGCACTTGTGCGTTG+TGG - chr1_3:7334934-7334953 Msa0100890:CDS 45.0%
GTCTCCAATAAAGCCTGTCA+AGG - chr1_3:7335339-7335358 Msa0100890:CDS 45.0%
! GAAGCCTTGACAGGCTTTAT+TGG + chr1_3:7335346-7335365 None:intergenic 45.0%
! GAGTATTGTGTTTCACGGTG+GGG + chr1_3:7335439-7335458 None:intergenic 45.0%
! CGAGTATTGTGTTTCACGGT+GGG + chr1_3:7335440-7335459 None:intergenic 45.0%
CCACCGTGAAACACAATACT+CGG - chr1_3:7335438-7335457 Msa0100890:intron 45.0%
AACGTAGGAGACAACAGTCT+TGG - chr1_3:7335590-7335609 Msa0100890:intron 45.0%
GTTATAAACACCTCTGGCAG+TGG + chr1_3:7335656-7335675 None:intergenic 45.0%
TATTCATCGACAGATGCTGG+AGG + chr1_3:7335734-7335753 None:intergenic 45.0%
TGAATATTTGGCTGATCCCG+TGG - chr1_3:7335748-7335767 Msa0100890:intron 45.0%
GGATACATTTGATCGTCCAC+GGG + chr1_3:7335767-7335786 None:intergenic 45.0%
GTATCCAGTCAACCCAGAAA+TGG - chr1_3:7335781-7335800 Msa0100890:intron 45.0%
! TGTTCCATTTCTGGGTTGAC+TGG + chr1_3:7335788-7335807 None:intergenic 45.0%
GAACAATCTACTGATGCGGT+TGG - chr1_3:7335803-7335822 Msa0100890:intron 45.0%
TTCTCCCCTTCAATTGTTGC+AGG + chr1_3:7335971-7335990 None:intergenic 45.0%
TTACCTGGGGAAGTGAATCA+TGG + chr1_3:7336075-7336094 None:intergenic 45.0%
AGCAAGAGCTTAGTTACCTG+GGG + chr1_3:7336088-7336107 None:intergenic 45.0%
CAGCAAGAGCTTAGTTACCT+GGG + chr1_3:7336089-7336108 None:intergenic 45.0%
ACAGCAAGAGCTTAGTTACC+TGG + chr1_3:7336090-7336109 None:intergenic 45.0%
ATTGATGCCTGATCCTATCC+AGG - chr1_3:7336269-7336288 Msa0100890:intron 45.0%
TTAACAGCCTGGATAGGATC+AGG + chr1_3:7336279-7336298 None:intergenic 45.0%
TGATCCTATCCAGGCTGTTA+AGG - chr1_3:7336278-7336297 Msa0100890:intron 45.0%
! TATCCCACAAGATGGTTCTG+AGG - chr1_3:7336353-7336372 Msa0100890:intron 45.0%
ATGGCCATTTGCATGCATCA+TGG - chr1_3:7336690-7336709 Msa0100890:CDS 45.0%
CATGTAGGATGAGACTACAG+TGG - chr1_3:7337044-7337063 Msa0100890:CDS 45.0%
!! CAGGCTAGCCTAAAGTATCA+TGG - chr1_3:7337192-7337211 Msa0100890:CDS 45.0%
CAAATTGTAGGCAGCGTCTA+CGG + chr1_3:7337221-7337240 None:intergenic 45.0%
GTAGACGCTGCCTACAATTT+GGG - chr1_3:7337220-7337239 Msa0100890:CDS 45.0%
TAGACGCTGCCTACAATTTG+GGG - chr1_3:7337221-7337240 Msa0100890:CDS 45.0%
AAGCAGCTTCCCCAAATTGT+AGG + chr1_3:7337233-7337252 None:intergenic 45.0%
GTAGTTGAAGCACAACTAGG+TGG + chr1_3:7337387-7337406 None:intergenic 45.0%
CCTGTAGTTGAAGCACAACT+AGG + chr1_3:7337390-7337409 None:intergenic 45.0%
CCTAGTTGTGCTTCAACTAC+AGG - chr1_3:7337387-7337406 Msa0100890:CDS 45.0%
ATCCTCAACTCCGTCCAATA+TGG - chr1_3:7337482-7337501 Msa0100890:CDS 45.0%
ATCCATATTGGACGGAGTTG+AGG + chr1_3:7337487-7337506 None:intergenic 45.0%
ATTTGCCGGATATAGGTCGA+TGG + chr1_3:7337607-7337626 None:intergenic 45.0%
CTCTTATCAGGTGCATTTGC+CGG + chr1_3:7337621-7337640 None:intergenic 45.0%
CAAATGCACCTGATAAGAGG+AGG - chr1_3:7337622-7337641 Msa0100890:intron 45.0%
TGAATTCCTCAGCATCTGTG+GGG + chr1_3:7337653-7337672 None:intergenic 45.0%
GTTGAATTCCTCAGCATCTG+TGG + chr1_3:7337655-7337674 None:intergenic 45.0%
!!! AACTTTTTCCTGGAGGTGCT+AGG + chr1_3:7337681-7337700 None:intergenic 45.0%
!! TTTGGTGCTGGAATCTTCTG+TGG - chr1_3:7337963-7337982 Msa0100890:intron 45.0%
ATCTTGGGAGCAAATGCTTG+TGG + chr1_3:7338077-7338096 None:intergenic 45.0%
GCTGCACATGGTACAATCTT+GGG + chr1_3:7338092-7338111 None:intergenic 45.0%
AGCTGCACATGGTACAATCT+TGG + chr1_3:7338093-7338112 None:intergenic 45.0%
ACTTAAAAGTTGTGCTGGGC+TGG + chr1_3:7338624-7338643 None:intergenic 45.0%
!! TAGGGTTTGAGTTGAGGTTC+TGG + chr1_3:7338672-7338691 None:intergenic 45.0%
TCTAGCATTCTACCTGGACT+TGG + chr1_3:7338702-7338721 None:intergenic 45.0%
TCCAGGTAGAATGCTAGAGA+TGG - chr1_3:7338704-7338723 Msa0100890:CDS 45.0%
ACCATCTCTAGCATTCTACC+TGG + chr1_3:7338708-7338727 None:intergenic 45.0%
!! GCAAAGGGGTGTCATTTGTA+TGG + chr1_3:7338739-7338758 None:intergenic 45.0%
ACTGGCAGCATAAAGCAAAG+GGG + chr1_3:7338753-7338772 None:intergenic 45.0%
GCTGCCAGTAATAATCTCTG+CGG - chr1_3:7338764-7338783 Msa0100890:CDS 45.0%
TGCACCGCAGAGATTATTAC+TGG + chr1_3:7338771-7338790 None:intergenic 45.0%
! TAATCTCTGCGGTGCACTTT+TGG - chr1_3:7338775-7338794 Msa0100890:CDS 45.0%
!! ACAATGGTGTTACAGGTGAG+AGG + chr1_3:7339422-7339441 None:intergenic 45.0%
! GTCCTTTCATTTGTGCCGAT+TGG - chr1_3:7339532-7339551 Msa0100890:intron 45.0%
TAAAAAACCACGCAGCAGTC+TGG - chr1_3:7339631-7339650 Msa0100890:intron 45.0%
!! CTATTGGAGAGTTGGTATGG+TGG + chr1_3:7339734-7339753 None:intergenic 45.0%
TACCGCATCTATTGGAGAGT+TGG + chr1_3:7339742-7339761 None:intergenic 45.0%
AAGTTAGCGCTTGGGGTAAT+CGG + chr1_3:7339809-7339828 None:intergenic 45.0%
! GTGGAGGAGAAACTCTCTTT+TGG + chr1_3:7339940-7339959 None:intergenic 45.0%
!! GACTTTAGAATCAGCGCAAG+GGG + chr1_3:7340059-7340078 None:intergenic 45.0%
!! GGACTTTAGAATCAGCGCAA+GGG + chr1_3:7340060-7340079 None:intergenic 45.0%
!! AGGACTTTAGAATCAGCGCA+AGG + chr1_3:7340061-7340080 None:intergenic 45.0%
AGTCCTTTGCAATGGCAATG+AGG - chr1_3:7340075-7340094 Msa0100890:intron 45.0%
TGCAATGGCAATGAGGATTC+GGG - chr1_3:7340082-7340101 Msa0100890:intron 45.0%
CGAGACTCCATTTGAGCATA+TGG + chr1_3:7340508-7340527 None:intergenic 45.0%
ATGGAGTCTCGTCCTTTAAG+AGG - chr1_3:7340517-7340536 Msa0100890:five_prime_UTR 45.0%
! TGGAGTCTCGTCCTTTAAGA+GGG - chr1_3:7340518-7340537 Msa0100890:five_prime_UTR 45.0%
ATCGAGGACGAGTATGATGC+AGG - chr1_3:7334189-7334208 Msa0100890:three_prime_UTR 50.0%
TCGAGGACGAGTATGATGCA+GGG - chr1_3:7334190-7334209 Msa0100890:three_prime_UTR 50.0%
GGGGGATTCATCAGAAGGAT+TGG + chr1_3:7334323-7334342 None:intergenic 50.0%
ACTTGGGGGGATTCATCAGA+AGG + chr1_3:7334328-7334347 None:intergenic 50.0%
TATGCTACCCCCCCTTTGAT+TGG - chr1_3:7334388-7334407 Msa0100890:three_prime_UTR 50.0%
ATGCTACCCCCCCTTTGATT+GGG - chr1_3:7334389-7334408 Msa0100890:three_prime_UTR 50.0%
AAGAACCCCAATCAAAGGGG+GGG + chr1_3:7334398-7334417 None:intergenic 50.0%
CAAGAACCCCAATCAAAGGG+GGG + chr1_3:7334399-7334418 None:intergenic 50.0%
AAGGCTTCTCATGCGACACA+TGG - chr1_3:7335358-7335377 Msa0100890:CDS 50.0%
AGGCTTCTCATGCGACACAT+GGG - chr1_3:7335359-7335378 Msa0100890:CDS 50.0%
CATGCGACACATGGGTTTCT+CGG - chr1_3:7335367-7335386 Msa0100890:CDS 50.0%
GGAGACTTGAATACGAGAGG+TGG + chr1_3:7335403-7335422 None:intergenic 50.0%
! CCGAGTATTGTGTTTCACGG+TGG + chr1_3:7335441-7335460 None:intergenic 50.0%
GGGCATTCGCATCATTCTTG+AGG + chr1_3:7335700-7335719 None:intergenic 50.0%
TTGCCATGATTCACTTCCCC+AGG - chr1_3:7336069-7336088 Msa0100890:intron 50.0%
CCTGCCATGATGCATGCAAA+TGG + chr1_3:7336697-7336716 None:intergenic 50.0%
CCATTTGCATGCATCATGGC+AGG - chr1_3:7336694-7336713 Msa0100890:CDS 50.0%
CGTAGACGCTGCCTACAATT+TGG - chr1_3:7337219-7337238 Msa0100890:CDS 50.0%
GAAGCTGCTTCCGTTGTTCT+TGG - chr1_3:7337243-7337262 Msa0100890:CDS 50.0%
TTTCCAAGCCACCAGGCATT+GGG - chr1_3:7337331-7337350 Msa0100890:CDS 50.0%
AAATGCAACCCAATGCCTGG+TGG + chr1_3:7337342-7337361 None:intergenic 50.0%
CAGGTGCATTTGCCGGATAT+AGG + chr1_3:7337614-7337633 None:intergenic 50.0%
CGGCAAATGCACCTGATAAG+AGG - chr1_3:7337619-7337638 Msa0100890:intron 50.0%
!!! TTTTCCTGGAGGTGCTAGGA+TGG + chr1_3:7337677-7337696 None:intergenic 50.0%
GTTGCACGTCTTAGGTCCAT+TGG + chr1_3:7337822-7337841 None:intergenic 50.0%
AGTGGAACATCAGCTGCACA+TGG + chr1_3:7338104-7338123 None:intergenic 50.0%
! CTTTTGTGCCTAGCTGATGC+CGG + chr1_3:7338238-7338257 None:intergenic 50.0%
GCATCAGCTAGGCACAAAAG+AGG - chr1_3:7338238-7338257 Msa0100890:intron 50.0%
TCGACTGGATGTCGATGTGA+TGG - chr1_3:7338421-7338440 Msa0100890:CDS 50.0%
!! TTCTACCTGGACTTGGTGGT+GGG + chr1_3:7338695-7338714 None:intergenic 50.0%
!! ATTCTACCTGGACTTGGTGG+TGG + chr1_3:7338696-7338715 None:intergenic 50.0%
AGCATTCTACCTGGACTTGG+TGG + chr1_3:7338699-7338718 None:intergenic 50.0%
!! GGTGCACTTTTGGAAGTGGT+GGG - chr1_3:7338785-7338804 Msa0100890:CDS 50.0%
! ACAGGTGAGAGGTGATTTGC+TGG + chr1_3:7339411-7339430 None:intergenic 50.0%
GGCCAATCGGCACAAATGAA+AGG + chr1_3:7339537-7339556 None:intergenic 50.0%
CTGGCGAATACCGCATCTAT+TGG + chr1_3:7339750-7339769 None:intergenic 50.0%
TGCGGTATTCGCCAGTTATC+TGG - chr1_3:7339755-7339774 Msa0100890:intron 50.0%
GCGGTATTCGCCAGTTATCT+GGG - chr1_3:7339756-7339775 Msa0100890:intron 50.0%
CGGTATTCGCCAGTTATCTG+GGG - chr1_3:7339757-7339776 Msa0100890:intron 50.0%
GGTATTCGCCAGTTATCTGG+GGG - chr1_3:7339758-7339777 Msa0100890:intron 50.0%
CTCCACAGAGCCATCTACTT+CGG - chr1_3:7339954-7339973 Msa0100890:intron 50.0%
! ATCCGAAGTAGATGGCTCTG+TGG + chr1_3:7339959-7339978 None:intergenic 50.0%
CAGAGCCATCTACTTCGGAT+TGG - chr1_3:7339959-7339978 Msa0100890:intron 50.0%
ATTGGATCAAGCTCCTCAGG+TGG - chr1_3:7339977-7339996 Msa0100890:intron 50.0%
TCCTCAGGTGGCTTGAAAAG+TGG - chr1_3:7339989-7340008 Msa0100890:intron 50.0%
!! AGAGGGAGGTGTCACAGAAA+TGG + chr1_3:7340262-7340281 None:intergenic 50.0%
! GTCTCGTCCTTTAAGAGGGA+TGG - chr1_3:7340522-7340541 Msa0100890:five_prime_UTR 50.0%
AACACGGCCATCCCTCTTAA+AGG + chr1_3:7340532-7340551 None:intergenic 50.0%
!! AGAAGGATTGGTGATGGCGG+TGG + chr1_3:7334311-7334330 None:intergenic 55.0%
TGCTACCCCCCCTTTGATTG+GGG - chr1_3:7334390-7334409 Msa0100890:three_prime_UTR 55.0%
GCGTTTGTGCATTGTCGGAC+TGG - chr1_3:7335111-7335130 Msa0100890:intron 55.0%
GTCGCATGAGAAGCCTTGAC+AGG + chr1_3:7335355-7335374 None:intergenic 55.0%
CGCGGAGACTTGAATACGAG+AGG + chr1_3:7335406-7335425 None:intergenic 55.0%
TGCTGGAGGACTGCAGCTTT+GGG + chr1_3:7335720-7335739 None:intergenic 55.0%
ATGCTGGAGGACTGCAGCTT+TGG + chr1_3:7335721-7335740 None:intergenic 55.0%
GTGACAGTTTCCAAGCCACC+AGG - chr1_3:7337324-7337343 Msa0100890:CDS 55.0%
GTTTCCAAGCCACCAGGCAT+TGG - chr1_3:7337330-7337349 Msa0100890:CDS 55.0%
TCAACCATCCTAGCACCTCC+AGG - chr1_3:7337670-7337689 Msa0100890:intron 55.0%
GCTGGAATCTTCTGTGGCGA+CGG - chr1_3:7337969-7337988 Msa0100890:intron 55.0%
TGACAACACCGGCATCAGCT+AGG - chr1_3:7338227-7338246 Msa0100890:intron 55.0%
GCTAACGTTGGATGCTCGAC+TGG - chr1_3:7338406-7338425 Msa0100890:CDS 55.0%
!! GGTGGGTAGGGTTTGAGTTG+AGG + chr1_3:7338678-7338697 None:intergenic 55.0%
!! CTGCGGTGCACTTTTGGAAG+TGG - chr1_3:7338781-7338800 Msa0100890:CDS 55.0%
!! CGGTGCACTTTTGGAAGTGG+TGG - chr1_3:7338784-7338803 Msa0100890:CDS 55.0%
ACATCCACATGAGGGGAGAG+TGG - chr1_3:7339211-7339230 Msa0100890:intron 55.0%
CATCCACATGAGGGGAGAGT+GGG - chr1_3:7339212-7339231 Msa0100890:intron 55.0%
TTTGTCCAGCCAAGGCAAGC+AGG - chr1_3:7339565-7339584 Msa0100890:intron 55.0%
TTGTCCAGCCAAGGCAAGCA+GGG - chr1_3:7339566-7339585 Msa0100890:intron 55.0%
ACTTTGCACCCTGCTTGCCT+TGG + chr1_3:7339577-7339596 None:intergenic 55.0%
GAAGAGAGCCCCCAGATAAC+TGG + chr1_3:7339769-7339788 None:intergenic 55.0%
TATCTGGGGGCTCTCTTCGT+TGG - chr1_3:7339771-7339790 Msa0100890:intron 55.0%
! CGAAGTAGATGGCTCTGTGG+AGG + chr1_3:7339956-7339975 None:intergenic 55.0%
! CGGATTGGATCAAGCTCCTC+AGG - chr1_3:7339974-7339993 Msa0100890:intron 55.0%
!!! GCCACTTTTCAAGCCACCTG+AGG + chr1_3:7339993-7340012 None:intergenic 55.0%
CAGGTGGCTTGAAAAGTGGC+AGG - chr1_3:7339993-7340012 Msa0100890:intron 55.0%
GAATCAGCGCAAGGGGTCAA+CGG + chr1_3:7340052-7340071 None:intergenic 55.0%
! GGTGGCGGCATTGAGAGTTG+AGG + chr1_3:7334293-7334312 None:intergenic 60.0%
!! AGGATTGGTGATGGCGGTGG+CGG + chr1_3:7334308-7334327 None:intergenic 60.0%
TTCTCAGCAGCCACTGCCAG+AGG - chr1_3:7335643-7335662 Msa0100890:intron 60.0%
CAACCCAATGCCTGGTGGCT+TGG + chr1_3:7337337-7337356 None:intergenic 60.0%
GGGCGTACCCTCCTCTTATC+AGG + chr1_3:7337633-7337652 None:intergenic 60.0%
GGTTGTGCTTGCGAAGGCTG+TGG - chr1_3:7337990-7338009 Msa0100890:intron 60.0%
!! CCTGGACTTGGTGGTGGGTA+GGG + chr1_3:7338690-7338709 None:intergenic 60.0%
!! ACCTGGACTTGGTGGTGGGT+AGG + chr1_3:7338691-7338710 None:intergenic 60.0%
GAATGTGCCAGACTGCTGCG+TGG + chr1_3:7339641-7339660 None:intergenic 60.0%
!! CGGTGGGGAGCACTGATACG+CGG + chr1_3:7335424-7335443 None:intergenic 65.0%
GGTACGCCCCACAGATGCTG+AGG - chr1_3:7337644-7337663 Msa0100890:intron 65.0%
GGCGACGGTTGTGCTTGCGA+AGG - chr1_3:7337984-7338003 Msa0100890:intron 65.0%
CCCTACCCACCACCAAGTCC+AGG - chr1_3:7338687-7338706 Msa0100890:CDS 65.0%
GCACCCACTCTCCCCTCATG+TGG + chr1_3:7339218-7339237 None:intergenic 65.0%
TGCACCCTGCTTGCCTTGGC+TGG + chr1_3:7339573-7339592 None:intergenic 65.0%
GGGGTCAACGGCGGGAATGA+AGG + chr1_3:7340040-7340059 None:intergenic 65.0%
TCAGCGCAAGGGGTCAACGG+CGG + chr1_3:7340049-7340068 None:intergenic 65.0%
GGGGGCTCTCTTCGTTGGCG+CGG - chr1_3:7339776-7339795 Msa0100890:intron 70.0%
CAGCGCAAGGGGTCAACGGC+GGG + chr1_3:7340048-7340067 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 7334133 7340558 7334133 ID=Msa0100890;Name=Msa0100890
chr1_3 mRNA 7334133 7340558 7334133 ID=Msa0100890-mRNA-1;Parent=Msa0100890;Name=Msa0100890-mRNA-1;_AED=0.06;_eAED=0.06;_QI=102|1|1|1|0.9|1|11|429|875
chr1_3 exon 7334133 7335117 7334133 ID=Msa0100890-mRNA-1:exon:2902;Parent=Msa0100890-mRNA-1
chr1_3 exon 7335237 7335405 7335237 ID=Msa0100890-mRNA-1:exon:2901;Parent=Msa0100890-mRNA-1
chr1_3 exon 7336219 7336285 7336219 ID=Msa0100890-mRNA-1:exon:2900;Parent=Msa0100890-mRNA-1
chr1_3 exon 7336379 7336477 7336379 ID=Msa0100890-mRNA-1:exon:2899;Parent=Msa0100890-mRNA-1
chr1_3 exon 7336558 7336741 7336558 ID=Msa0100890-mRNA-1:exon:2898;Parent=Msa0100890-mRNA-1
chr1_3 exon 7336824 7336895 7336824 ID=Msa0100890-mRNA-1:exon:2897;Parent=Msa0100890-mRNA-1
chr1_3 exon 7336994 7337505 7336994 ID=Msa0100890-mRNA-1:exon:2896;Parent=Msa0100890-mRNA-1
chr1_3 exon 7338317 7338466 7338317 ID=Msa0100890-mRNA-1:exon:2895;Parent=Msa0100890-mRNA-1
chr1_3 exon 7338601 7339144 7338601 ID=Msa0100890-mRNA-1:exon:2894;Parent=Msa0100890-mRNA-1
chr1_3 exon 7339227 7339384 7339227 ID=Msa0100890-mRNA-1:exon:2893;Parent=Msa0100890-mRNA-1
chr1_3 exon 7340340 7340558 7340340 ID=Msa0100890-mRNA-1:exon:2892;Parent=Msa0100890-mRNA-1
chr1_3 five_prime_UTR 7340457 7340558 7340457 ID=Msa0100890-mRNA-1:five_prime_utr;Parent=Msa0100890-mRNA-1
chr1_3 CDS 7340340 7340456 7340340 ID=Msa0100890-mRNA-1:cds;Parent=Msa0100890-mRNA-1
chr1_3 CDS 7339227 7339384 7339227 ID=Msa0100890-mRNA-1:cds;Parent=Msa0100890-mRNA-1
chr1_3 CDS 7338601 7339144 7338601 ID=Msa0100890-mRNA-1:cds;Parent=Msa0100890-mRNA-1
chr1_3 CDS 7338317 7338466 7338317 ID=Msa0100890-mRNA-1:cds;Parent=Msa0100890-mRNA-1
chr1_3 CDS 7336994 7337505 7336994 ID=Msa0100890-mRNA-1:cds;Parent=Msa0100890-mRNA-1
chr1_3 CDS 7336824 7336895 7336824 ID=Msa0100890-mRNA-1:cds;Parent=Msa0100890-mRNA-1
chr1_3 CDS 7336558 7336741 7336558 ID=Msa0100890-mRNA-1:cds;Parent=Msa0100890-mRNA-1
chr1_3 CDS 7336379 7336477 7336379 ID=Msa0100890-mRNA-1:cds;Parent=Msa0100890-mRNA-1
chr1_3 CDS 7336219 7336285 7336219 ID=Msa0100890-mRNA-1:cds;Parent=Msa0100890-mRNA-1
chr1_3 CDS 7335237 7335405 7335237 ID=Msa0100890-mRNA-1:cds;Parent=Msa0100890-mRNA-1
chr1_3 CDS 7334562 7335117 7334562 ID=Msa0100890-mRNA-1:cds;Parent=Msa0100890-mRNA-1
chr1_3 three_prime_UTR 7334133 7334561 7334133 ID=Msa0100890-mRNA-1:three_prime_utr;Parent=Msa0100890-mRNA-1
Gene Sequence

>Msa0100890

ATGGATTCTCCAGAAGCTTCTCAGATTAAGAACATTTCTTCTTCTTCCTCTCTCTCCTCAACTCTCAATGCCGCCACCGCCATCACCAATCCTTCTGATGAATCCCCCCAAGTTCAAGAATCTCCCTTTTTGAGATTTGTCAACACTCTGTCTCCAATAAAGCCTGTCAAGGCTTCTCATGCGACACATGGGTTTCTCGGACTCAATTCTCCACCTCTCGTATTCAAGTCTCCGCGTATCAGTGCTCCCCACCGTGAAACACAATACTCGGAAAGGCTTGAAGGTACCCATTTATCAGATACAGAAACATCTCAAAGTAACGTAGGAGACAACAGTCTTGGTGAAGCTCGTATTGATTTGAAGAAATTGAATTCTCAGCAGCCACTGCCAGAGGTGTTTATAACAGTTGCTCAAAAAAATTTTGACCTCAAGAATGATGCGAATGCCCAAAGCTGCAGTCCTCCAGCATCTGTCGATGAATATTTGGCTGATCCCGTGGACGATCAAATGTATCCAGTCAACCCAGAAATGGAACAATCTACTGATGCGGTTGGGTCATCATCACTAACTGAGTCGGAGAAAGTTATATTAAAATTTGATAGGAGTGACGGTCCTAGTAACATAGCAGAAGAACTTTTGCCTTTGTTGGAGGAATCTAATATGGGTCATCAAGAAAGGACAACATATGTTGAAAATCCTGCAACAATTGAAGGGGAGAAAAATGGTGCTGAATTGGTTTCTCAAGAGCGCATAAACTTAGGCTCGAGTTCAGGTGCAGATGTTTTTGATAAACAATATTGCCATGATTCACTTCCCCAGTGTGCAGGAAATGATCAACAGCATCAAAGTGACTGTGCACCTCAATTGATGCCTGATCCTATCCAGGCTGTTAAGGAATTTGAAAATTGCAGTGAGATGGTGTCATCCTCACAAGTAAATTCAGAGAATATCCCACAAGATGGTTCTGAGTCAATGCAGGCTAGCCTAAAGTATCATGGCATCCGTAGACGCTGCCTACAATTTGGGGAAGCTGCTTCCGTTGTTCTTGGAAGTAATAAGTCTCATGTGAAATTGAATACAACTTCAAGCAACGCAAAAATGGTTTCTGTGACAGTTTCCAAGCCACCAGGCATTGGGTTGCATTTAAATAGCATTATAAATGCAATGCCACCTAGTTGTGCTTCAACTACAGGTGTGAGATTATCAGATGGTATACAGGGGTCCAAATCTTCTATAAGTTTGCATATAGTGGAAAACGTGGCAAGATCCTCAACTCCGTCCAATATGGATGATCAATCTTTTATTGATACTAAGAATGAGAGCCATGAAACTGATGCTTCAGTAGTTGCAGATTCTTTCATTTCCGAGTCTCCTATCTTGACAGAATCCATCGACCTATATCCGGCAAATGCACCTGATAAGAGGAGGGTACGCCCCACAGATGCTGAGGAATTCAACCATCCTAGCACCTCCAGGAAAAAGAAGAAAACAAGTACTGATGATGCCAATGGACCTAAGACGTGCAACTGTAAGAAGAGTAAATGTTTGAAACTTTACTGTGATTGTTTTGGTGCTGGAATCTTCTGTGGCGACGGTTGTGCTTGCGAAGGCTGTGGTAACAGAGTAGAATTTCAGGATAAAGTTGTTGAAACAAAACAGCAAATTGAATCCCGTAATCCACAAGCATTTGCTCCCAAGATTGTACCATGTGCAGCTGATGTTCCACTGAATAATATGGAAGATGTGAATATGACAACACCGGCATCAGCTAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAAAGTGTACAAAAAAATACTGTGAATGTTTTCAGGCTAACGTTGGATGCTCGACTGGATGTCGATGTGATGGATGTATGAATGTCTTTGGCAAGAGAGAAGATTTTGTGGCAATGGAACATGCTTCTAGCAATGAAAGGGAGAGCAACATTGTTGAAGAAGGGTTGGATGACAAACTGCACAAAAGGCAGAAAATTGTGACAATCAGGACAGACTTGTTACGACCAGCAAATCACCTCTCACCTGTAACACCATTGTTGCAATGCTCTGACCAAGGCAAGCAGGGTGCAAAGTCTAGACATACTTCTGCAAATTTGACCAAATCTTCTAAAAAACCACGCAGCAGTCTGGCACATTCGAAGTCGAATGATTCTCAAAAGAATGCACCTACACGTTCTTCATCTACAGAAAATGAGTGGATAGATCTTCCACCATACCAACTCTCCAATAGATGCGGTATTCGCCAGTTATCTGGGGGCTCTCTTCGTTGGCGCGGTAGTTCACCGATTACCCCAAGCGCTAACTTAGATGATGAATCAGATGGTAAGCTCTTTGACATTATAGAAGATGAAACACCTGATGTATTGAAGGAAGCTTCAACTCCCATCAAGTCTGTGAAAGCAAATTCTCCAATCCAAAAGAGAGTTTCTCCTCCACAGAGCCATCTACTTCGGATTGGATCAAGCTCCTCAGGTGGCTTGAAAAGTGGCAGGAAATTTATATTGCAATCTGTTCCTTCATTCCCGCCGTTGACCCCTTGCGCTGATTCTAAAGTCCTTTGCAATGGCAATGAGGATTCGGGTAACAGCACAGATAAAGTGACATAA
Protein sequence

>Msa0100890

MDSPEASQIKNISSSSSLSSTLNAATAITNPSDESPQVQESPFLRFVNTLSPIKPVKASHATHGFLGLNSPPLVFKSPRISAPHRETQYSERLEGTHLSDTETSQSNVGDNSLGEARIDLKKLNSQQPLPEVFITVAQKNFDLKNDANAQSCSPPASVDEYLADPVDDQMYPVNPEMEQSTDAVGSSSLTESEKVILKFDRSDGPSNIAEELLPLLEESNMGHQERTTYVENPATIEGEKNGAELVSQERINLGSSSGADVFDKQYCHDSLPQCAGNDQQHQSDCAPQLMPDPIQAVKEFENCSEMVSSSQVNSENIPQDGSESMQASLKYHGIRRRCLQFGEAASVVLGSNKSHVKLNTTSSNAKMVSVTVSKPPGIGLHLNSIINAMPPSCASTTGVRLSDGIQGSKSSISLHIVENVARSSTPSNMDDQSFIDTKNESHETDASVVADSFISESPILTESIDLYPANAPDKRRVRPTDAEEFNHPSTSRKKKKTSTDDANGPKTCNCKKSKCLKLYCDCFGAGIFCGDGCACEGCGNRVEFQDKVVETKQQIESRNPQAFAPKIVPCAADVPLNNMEDVNMTTPASARHKRGCNCKRSKCTKKYCECFQANVGCSTGCRCDGCMNVFGKREDFVAMEHASSNERESNIVEEGLDDKLHKRQKIVTIRTDLLRPANHLSPVTPLLQCSDQGKQGAKSRHTSANLTKSSKKPRSSLAHSKSNDSQKNAPTRSSSTENEWIDLPPYQLSNRCGIRQLSGGSLRWRGSSPITPSANLDDESDGKLFDIIEDETPDVLKEASTPIKSVKANSPIQKRVSPPQSHLLRIGSSSSGGLKSGRKFILQSVPSFPPLTPCADSKVLCNGNEDSGNSTDKVT*