Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000324.t1 | XP_003620976.1 | 98.1 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 5.80E-51 | 210.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000324.t1 | Q39236 | 91.3 | 104 | 9 | 0 | 1 | 104 | 1 | 104 | 2.7e-49 | 196.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000324.t1 | B7FH46 | 98.1 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 4.2e-51 | 210.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78402 | MS.gene000324 | PPI |
| MS.gene000324 | MS.gene82237 | PPI |
| MS.gene87064 | MS.gene000324 | PPI |
| MS.gene48819 | MS.gene000324 | PPI |
| MS.gene76728 | MS.gene000324 | PPI |
| MS.gene31113 | MS.gene000324 | PPI |
| MS.gene052074 | MS.gene000324 | PPI |
| MS.gene000324 | MS.gene45536 | PPI |
| MS.gene42075 | MS.gene000324 | PPI |
| MS.gene87743 | MS.gene000324 | PPI |
| MS.gene77045 | MS.gene000324 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000324.t1 | MTR_7g005540 | 98.113 | 106 | 2 | 0 | 1 | 106 | 1 | 106 | 3.48e-75 | 219 |
| MS.gene000324.t1 | MTR_5g066740 | 87.500 | 104 | 13 | 0 | 1 | 104 | 7 | 110 | 4.16e-66 | 196 |
| MS.gene000324.t1 | MTR_7g005540 | 100.000 | 60 | 0 | 0 | 1 | 60 | 1 | 60 | 2.72e-37 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene000324.t1 | AT4G24440 | 91.346 | 104 | 9 | 0 | 1 | 104 | 1 | 104 | 1.51e-69 | 205 |
| MS.gene000324.t1 | AT4G24440 | 91.346 | 104 | 9 | 0 | 1 | 104 | 1 | 104 | 1.51e-69 | 205 |
Find 23 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTCCTGAGATTGCGATTC+AGG | 0.222867 | 7.1:-88394194 | MS.gene000324:CDS |
| AATGTGCCTCACTGAGACTT+TGG | 0.433161 | 7.1:-88394242 | MS.gene000324:CDS |
| ATTGTGATTAGACAATTATC+TGG | 0.433788 | 7.1:+88390732 | None:intergenic |
| GTAGTCTATGACTGAAGCTC+TGG | 0.460011 | 7.1:-88394055 | MS.gene000324:intron |
| TTAGGGCAGCCTTGTGTGCA+AGG | 0.462107 | 7.1:+88390775 | None:intergenic |
| ATTGAAAGAGAAGATACAAA+AGG | 0.468041 | 7.1:-88390817 | MS.gene000324:CDS |
| GGTTCTCGTTCAGTTTGATA+AGG | 0.472558 | 7.1:-88394173 | MS.gene000324:intron |
| CAAAGCATCTTGTAAGATGA+AGG | 0.489651 | 7.1:+88391358 | None:intergenic |
| TAACCCGTCCAACATTCTCT+TGG | 0.494051 | 7.1:+88391318 | None:intergenic |
| CACTGAGACTTTGGACGAGA+TGG | 0.495885 | 7.1:-88394233 | MS.gene000324:CDS |
| AGAACCTGAATCGCAATCTC+AGG | 0.497392 | 7.1:+88394190 | None:intergenic |
| TAAAAGCAAGGTCTCTATCA+AGG | 0.505886 | 7.1:-88394022 | MS.gene000324:intron |
| AGATGATAGCCTTGCACACA+AGG | 0.527665 | 7.1:-88390784 | MS.gene000324:CDS |
| TGTTGGACGGGTTAAAATAG+TGG | 0.534469 | 7.1:-88391309 | MS.gene000324:CDS |
| AGACAATTATCTGGCGTGAA+AGG | 0.536018 | 7.1:+88390741 | None:intergenic |
| CTTTATCGTAGGTCGACAAT+CGG | 0.550857 | 7.1:-88394265 | MS.gene000324:CDS |
| GAAGACAACCAAGAGAATGT+TGG | 0.561206 | 7.1:-88391326 | MS.gene000324:CDS |
| TTGGACGAGATGGTTCAGAA+TGG | 0.589806 | 7.1:-88394223 | MS.gene000324:CDS |
| CAACCAAGAGAATGTTGGAC+GGG | 0.592439 | 7.1:-88391321 | MS.gene000324:CDS |
| GGAAACACAAGTTAAAAGCA+AGG | 0.611187 | 7.1:-88394034 | MS.gene000324:CDS |
| ACAACCAAGAGAATGTTGGA+CGG | 0.645466 | 7.1:-88391322 | MS.gene000324:CDS |
| CGACGTTCGAACTTTATCGT+AGG | 0.648273 | 7.1:-88394276 | MS.gene000324:CDS |
| TCTCGTCCAAAGTCTCAGTG+AGG | 0.751939 | 7.1:+88394236 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTATTGAATAAATTCTT+TGG | - | chr7.1:88392148-88392167 | MS.gene000324:intron | 10.0% |
| !! | ATTTATTGAATAAATTCTTT+GGG | - | chr7.1:88392149-88392168 | MS.gene000324:intron | 10.0% |
| !! | TATGTTATTATAGATTTAAA+AGG | - | chr7.1:88393871-88393890 | MS.gene000324:intron | 10.0% |
| !!! | ACAGTTTTTTTTTTTTTTTT+TGG | + | chr7.1:88393998-88394017 | None:intergenic | 10.0% |
| !! | TAAAAAAATTCTACGTAATA+GGG | - | chr7.1:88393117-88393136 | MS.gene000324:intron | 15.0% |
| !! | TTAAAAAAATTCTACGTAAT+AGG | - | chr7.1:88393116-88393135 | MS.gene000324:intron | 15.0% |
| !! | TTTATTGAATAAATTCTTTG+GGG | - | chr7.1:88392150-88392169 | MS.gene000324:intron | 15.0% |
| !! | TTTGATGTGTAATTAAAATT+TGG | + | chr7.1:88391672-88391691 | None:intergenic | 15.0% |
| !!! | AAACAAATTTATTTTTCTCT+GGG | - | chr7.1:88394049-88394068 | MS.gene000324:CDS | 15.0% |
| !!! | AAACATAAAAAGATGTTTTA+AGG | + | chr7.1:88393458-88393477 | None:intergenic | 15.0% |
| !!! | TAAACAAATTTATTTTTCTC+TGG | - | chr7.1:88394048-88394067 | MS.gene000324:CDS | 15.0% |
| !!! | TACCTTTTTACTTAATTTTT+TGG | - | chr7.1:88392755-88392774 | MS.gene000324:intron | 15.0% |
| !! | AATAATAACATGAAGATTGA+AGG | + | chr7.1:88393897-88393916 | None:intergenic | 20.0% |
| !! | AGCCAAAAAATTAAGTAAAA+AGG | + | chr7.1:88392760-88392779 | None:intergenic | 20.0% |
| !! | ATAATCATGAGTAAAAAGTA+TGG | + | chr7.1:88392849-88392868 | None:intergenic | 20.0% |
| !! | ATTAAGTAAAAAGGTAATTG+TGG | + | chr7.1:88392751-88392770 | None:intergenic | 20.0% |
| !! | TAGTACAAAATGTTGTTAAA+TGG | + | chr7.1:88393163-88393182 | None:intergenic | 20.0% |
| !! | TATTTGCATTATCTTCTATT+TGG | - | chr7.1:88392578-88392597 | MS.gene000324:intron | 20.0% |
| !! | TTAAGTAAAAAGGTAATTGT+GGG | + | chr7.1:88392750-88392769 | None:intergenic | 20.0% |
| !! | TTACATTTAGAAATTCCTTA+TGG | - | chr7.1:88392516-88392535 | MS.gene000324:intron | 20.0% |
| !!! | CTTATTATTTTAATTGCATG+TGG | - | chr7.1:88390925-88390944 | MS.gene000324:intron | 20.0% |
| !!! | TAAAATTTGGTTTAAGACAT+TGG | + | chr7.1:88391659-88391678 | None:intergenic | 20.0% |
| !!! | TTCATTCAAGGTTTAATTTT+TGG | - | chr7.1:88392612-88392631 | MS.gene000324:intron | 20.0% |
| !!! | TTTTTACCTTTCAATTCAAT+GGG | - | chr7.1:88391534-88391553 | MS.gene000324:intron | 20.0% |
| ! | ATAACAGTCATATATGTCAA+TGG | + | chr7.1:88392877-88392896 | None:intergenic | 25.0% |
| ! | ATGACATGTTTCAGTATAAA+GGG | + | chr7.1:88391837-88391856 | None:intergenic | 25.0% |
| ! | ATTCAGTTACAAATCCTATT+TGG | + | chr7.1:88392121-88392140 | None:intergenic | 25.0% |
| ! | ATTGAAAGAGAAGATACAAA+AGG | - | chr7.1:88394191-88394210 | MS.gene000324:CDS | 25.0% |
| ! | ATTGTGATTAGACAATTATC+TGG | + | chr7.1:88394279-88394298 | None:intergenic | 25.0% |
| ! | ATTGTTAAGATTGTCTAGTA+GGG | - | chr7.1:88391074-88391093 | MS.gene000324:intron | 25.0% |
| ! | CTATAATTCACCATCAAATT+TGG | + | chr7.1:88392076-88392095 | None:intergenic | 25.0% |
| ! | GTTTGTACTAGGAATAAATA+TGG | + | chr7.1:88392341-88392360 | None:intergenic | 25.0% |
| ! | TACAAAATGTTGTTAAATGG+AGG | + | chr7.1:88393160-88393179 | None:intergenic | 25.0% |
| ! | TAGAATTGTCTGATAAAAAC+TGG | - | chr7.1:88392093-88392112 | MS.gene000324:intron | 25.0% |
| ! | TAGTCATCGTTATAAATGTA+TGG | - | chr7.1:88394094-88394113 | MS.gene000324:intron | 25.0% |
| ! | TATTGTTAAGATTGTCTAGT+AGG | - | chr7.1:88391073-88391092 | MS.gene000324:intron | 25.0% |
| ! | TCGTTATAAATGTATGGTTA+TGG | - | chr7.1:88394100-88394119 | MS.gene000324:intron | 25.0% |
| ! | TGTTGAAAAACCAAATTTGA+TGG | - | chr7.1:88392063-88392082 | MS.gene000324:intron | 25.0% |
| ! | TTACATTGAGAATATCACTT+GGG | - | chr7.1:88393929-88393948 | MS.gene000324:intron | 25.0% |
| !! | ACATCAAATAACAATTTTCC+GGG | - | chr7.1:88391684-88391703 | MS.gene000324:intron | 25.0% |
| !! | ATAGAAGATTAATTTGACTG+TGG | - | chr7.1:88393374-88393393 | MS.gene000324:intron | 25.0% |
| !! | ATCTTTTGTTAGATAGTGTA+AGG | - | chr7.1:88391020-88391039 | MS.gene000324:intron | 25.0% |
| !! | CACATCAAATAACAATTTTC+CGG | - | chr7.1:88391683-88391702 | MS.gene000324:intron | 25.0% |
| !! | CTTTTTACCTTTCAATTCAA+TGG | - | chr7.1:88391533-88391552 | MS.gene000324:intron | 25.0% |
| !! | TAGAAGATTAATTTGACTGT+GGG | - | chr7.1:88393375-88393394 | MS.gene000324:intron | 25.0% |
| !! | TCTCATAGTTTGGAATAAAT+CGG | + | chr7.1:88391568-88391587 | None:intergenic | 25.0% |
| !! | TTCATCTCATTAGTTTGAAT+TGG | + | chr7.1:88391256-88391275 | None:intergenic | 25.0% |
| !!! | AAAAAGATGTTTTAAGGTGT+TGG | + | chr7.1:88393452-88393471 | None:intergenic | 25.0% |
| !!! | AAAAGATGTTTTAAGGTGTT+GGG | + | chr7.1:88393451-88393470 | None:intergenic | 25.0% |
| !!! | TTTTCAAGAGATTCTTAAAC+CGG | + | chr7.1:88391788-88391807 | None:intergenic | 25.0% |
| !!! | TTTTTTCCATCTCTTTTTGA+GGG | - | chr7.1:88392933-88392952 | MS.gene000324:intron | 25.0% |
| AATGAGATGAAGTTTACCTA+GGG | - | chr7.1:88391265-88391284 | MS.gene000324:intron | 30.0% | |
| ACACAGAACTAAAATTACAC+AGG | - | chr7.1:88392209-88392228 | MS.gene000324:intron | 30.0% | |
| ACTATACCACTATAATGTAG+CGG | + | chr7.1:88393224-88393243 | None:intergenic | 30.0% | |
| ATACAACTGTTAACACACAA+AGG | + | chr7.1:88391910-88391929 | None:intergenic | 30.0% | |
| ATTTAGAAATTCCTTATGGC+GGG | - | chr7.1:88392520-88392539 | MS.gene000324:intron | 30.0% | |
| ATTTGTTTACATAGAGCTCA+TGG | + | chr7.1:88394037-88394056 | None:intergenic | 30.0% | |
| CATTGAGCAACAAATATACA+AGG | + | chr7.1:88391146-88391165 | None:intergenic | 30.0% | |
| CATTTAGAAATTCCTTATGG+CGG | - | chr7.1:88392519-88392538 | MS.gene000324:intron | 30.0% | |
| GAAACTAAGTAGACTATTGT+TGG | - | chr7.1:88392964-88392983 | MS.gene000324:intron | 30.0% | |
| GAAAGTTTGTGAATGAGTTT+CGG | + | chr7.1:88391748-88391767 | None:intergenic | 30.0% | |
| GAGATTTAAAGAGATTGAGT+TGG | - | chr7.1:88392713-88392732 | MS.gene000324:intron | 30.0% | |
| GATAAAAACTGGTACCAAAT+AGG | - | chr7.1:88392104-88392123 | MS.gene000324:intron | 30.0% | |
| GATGACATGTTTCAGTATAA+AGG | + | chr7.1:88391838-88391857 | None:intergenic | 30.0% | |
| GATTGAGCCAAAAATATACA+AGG | + | chr7.1:88391178-88391197 | None:intergenic | 30.0% | |
| GGAAGTCATGACAAAAAAAA+TGG | + | chr7.1:88392828-88392847 | None:intergenic | 30.0% | |
| GGTTTAAGAATCTCTTGAAA+AGG | - | chr7.1:88391787-88391806 | MS.gene000324:intron | 30.0% | |
| GTTACATTGAGAATATCACT+TGG | - | chr7.1:88393928-88393947 | MS.gene000324:intron | 30.0% | |
| GTTATTGTAGAATTATTGCG+TGG | + | chr7.1:88392300-88392319 | None:intergenic | 30.0% | |
| TAAAATCAAAGTCGAGGATA+TGG | + | chr7.1:88391629-88391648 | None:intergenic | 30.0% | |
| TAATAACATAGTGTAGATGC+TGG | + | chr7.1:88393861-88393880 | None:intergenic | 30.0% | |
| TAATGAGATGAAGTTTACCT+AGG | - | chr7.1:88391264-88391283 | MS.gene000324:intron | 30.0% | |
| TCATGAAGAAATACTATGCA+AGG | + | chr7.1:88392471-88392490 | None:intergenic | 30.0% | |
| TGGAAGAACATGAAAAAATG+AGG | + | chr7.1:88391717-88391736 | None:intergenic | 30.0% | |
| TGTGCAGTTAGTATCTATTA+TGG | + | chr7.1:88392405-88392424 | None:intergenic | 30.0% | |
| TTGTACTAAATAACGTATCG+TGG | - | chr7.1:88393175-88393194 | MS.gene000324:intron | 30.0% | |
| TTGTTAAATAGCAGCTATAG+TGG | + | chr7.1:88393248-88393267 | None:intergenic | 30.0% | |
| TTGTTAAATGGAGGATATAG+TGG | + | chr7.1:88393151-88393170 | None:intergenic | 30.0% | |
| TTTATTCCAAACTATGAGAG+AGG | - | chr7.1:88391569-88391588 | MS.gene000324:intron | 30.0% | |
| TTTCTATCGTATTGTCAACA+AGG | - | chr7.1:88393760-88393779 | MS.gene000324:intron | 30.0% | |
| ! | ACACAAAGGTATATTGTAGA+GGG | + | chr7.1:88391896-88391915 | None:intergenic | 30.0% |
| ! | ACAGATTTTGTGACAATGTT+TGG | - | chr7.1:88393626-88393645 | MS.gene000324:intron | 30.0% |
| ! | AGAAAAACTGAAACTGACTT+TGG | + | chr7.1:88392447-88392466 | None:intergenic | 30.0% |
| ! | GCATATTTTCTGTTTGTACT+AGG | + | chr7.1:88392352-88392371 | None:intergenic | 30.0% |
| ! | GTGTTCTTTATTTATCAGCA+TGG | + | chr7.1:88391948-88391967 | None:intergenic | 30.0% |
| !! | ATCTTTGTTCTAGAGTCATT+AGG | + | chr7.1:88394135-88394154 | None:intergenic | 30.0% |
| !! | GTATCAGTTTTTCAATCCAA+TGG | - | chr7.1:88391496-88391515 | MS.gene000324:intron | 30.0% |
| !! | TACTGAGCCTTGTATATTTT+TGG | - | chr7.1:88391168-88391187 | MS.gene000324:intron | 30.0% |
| !!! | AGTGTAAGGTGTTGATTTTT+TGG | - | chr7.1:88391034-88391053 | MS.gene000324:intron | 30.0% |
| !!! | ATTTTTTGGCTCTAAACATG+AGG | - | chr7.1:88392769-88392788 | MS.gene000324:intron | 30.0% |
| !!! | GTTTTTTCCATCTCTTTTTG+AGG | - | chr7.1:88392932-88392951 | MS.gene000324:intron | 30.0% |
| AAAAAATGAGGAAGAGAACC+CGG | + | chr7.1:88391705-88391724 | None:intergenic | 35.0% | |
| AACGTATCGTGGAACAATAA+CGG | - | chr7.1:88393186-88393205 | MS.gene000324:intron | 35.0% | |
| AAGAATCTCTTGAAAAGGTG+TGG | - | chr7.1:88391792-88391811 | MS.gene000324:intron | 35.0% | |
| ACAATTCAAGTCCACAAATC+AGG | - | chr7.1:88391966-88391985 | MS.gene000324:intron | 35.0% | |
| AGAATTATTGCGTGGTTAAC+TGG | + | chr7.1:88392292-88392311 | None:intergenic | 35.0% | |
| ATGAGATCGTATAGTGCAAA+AGG | + | chr7.1:88392912-88392931 | None:intergenic | 35.0% | |
| CAAATTCCGCTACATTATAG+TGG | - | chr7.1:88393215-88393234 | MS.gene000324:intron | 35.0% | |
| CAGTTTGATAAGGTAGGTTT+CGG | - | chr7.1:88390845-88390864 | MS.gene000324:intron | 35.0% | |
| CCAACTTTACGAATCTCTAA+AGG | + | chr7.1:88391870-88391889 | None:intergenic | 35.0% | |
| CCACAAATCAGGATCAAATA+GGG | - | chr7.1:88391977-88391996 | MS.gene000324:intron | 35.0% | |
| GAACACTCAGAGTAAAGAAA+AGG | + | chr7.1:88393564-88393583 | None:intergenic | 35.0% | |
| GCATAGTATTTCTTCATGAG+AGG | - | chr7.1:88392472-88392491 | MS.gene000324:intron | 35.0% | |
| GGAAACACAAGTTAAAAGCA+AGG | - | chr7.1:88390974-88390993 | MS.gene000324:intron | 35.0% | |
| GTCGCATTTCAGTTTAAGTA+TGG | - | chr7.1:88391287-88391306 | MS.gene000324:intron | 35.0% | |
| TAAAAGCAAGGTCTCTATCA+AGG | - | chr7.1:88390986-88391005 | MS.gene000324:intron | 35.0% | |
| TAAACATGAGGTTCATTTGC+CGG | - | chr7.1:88392781-88392800 | MS.gene000324:intron | 35.0% | |
| TAAAGATGCCTAACTTGAGA+GGG | + | chr7.1:88392549-88392568 | None:intergenic | 35.0% | |
| TAGACTATTGTTGGATAGCA+AGG | - | chr7.1:88392973-88392992 | MS.gene000324:intron | 35.0% | |
| TCCAAGTAAAATCAAAGTCG+AGG | + | chr7.1:88391635-88391654 | None:intergenic | 35.0% | |
| TCCACAAATCAGGATCAAAT+AGG | - | chr7.1:88391976-88391995 | MS.gene000324:intron | 35.0% | |
| TGTGTGTTAACAGTTGTATC+TGG | - | chr7.1:88391911-88391930 | MS.gene000324:intron | 35.0% | |
| TTAAAGATGCCTAACTTGAG+AGG | + | chr7.1:88392550-88392569 | None:intergenic | 35.0% | |
| TTAAGATTGTCTAGTAGGGA+TGG | - | chr7.1:88391078-88391097 | MS.gene000324:intron | 35.0% | |
| TTACCTTTCAATTCAATGGG+TGG | - | chr7.1:88391537-88391556 | MS.gene000324:intron | 35.0% | |
| ! | ACTTTTACATGAACAAGCCA+TGG | + | chr7.1:88393033-88393052 | None:intergenic | 35.0% |
| ! | CAAAGCATCTTGTAAGATGA+AGG | + | chr7.1:88393653-88393672 | None:intergenic | 35.0% |
| ! | CACACAAAGGTATATTGTAG+AGG | + | chr7.1:88391897-88391916 | None:intergenic | 35.0% |
| ! | CCTTTAGAGATTCGTAAAGT+TGG | - | chr7.1:88391867-88391886 | MS.gene000324:intron | 35.0% |
| ! | CTTTTCACTTTCCAATCACA+GGG | - | chr7.1:88393589-88393608 | MS.gene000324:intron | 35.0% |
| ! | GAAAGGAGAGTTCTCTTTTA+GGG | + | chr7.1:88394253-88394272 | None:intergenic | 35.0% |
| ! | GAATCTCTAAAGGCTGAAAT+AGG | + | chr7.1:88391860-88391879 | None:intergenic | 35.0% |
| ! | TCTCATTAGTTTGAATTGGC+TGG | + | chr7.1:88391252-88391271 | None:intergenic | 35.0% |
| ! | TCTTTTCACTTTCCAATCAC+AGG | - | chr7.1:88393588-88393607 | MS.gene000324:intron | 35.0% |
| ! | TGAAAGGAGAGTTCTCTTTT+AGG | + | chr7.1:88394254-88394273 | None:intergenic | 35.0% |
| !! | TCCTCGACTTTGATTTTACT+TGG | - | chr7.1:88391631-88391650 | MS.gene000324:intron | 35.0% |
| !!! | AAGGTGTTGATTTTTTGGTG+AGG | - | chr7.1:88391039-88391058 | MS.gene000324:intron | 35.0% |
| AAACATGAGGTTCATTTGCC+GGG | - | chr7.1:88392782-88392801 | MS.gene000324:intron | 40.0% | |
| ACAACCAAGAGAATGTTGGA+CGG | - | chr7.1:88393686-88393705 | MS.gene000324:intron | 40.0% | |
| ACATCTCCTCTCTCATAGTT+TGG | + | chr7.1:88391578-88391597 | None:intergenic | 40.0% | |
| AGACAATTATCTGGCGTGAA+AGG | + | chr7.1:88394270-88394289 | None:intergenic | 40.0% | |
| AGTTTGTGAATGAGTTTCGG+AGG | + | chr7.1:88391745-88391764 | None:intergenic | 40.0% | |
| ATATGACCAAACTGCATACC+CGG | + | chr7.1:88392803-88392822 | None:intergenic | 40.0% | |
| ATTGCGTGGTTAACTGGAAT+AGG | + | chr7.1:88392286-88392305 | None:intergenic | 40.0% | |
| ATTGTGAACTGTCTCTGACT+TGG | + | chr7.1:88392184-88392203 | None:intergenic | 40.0% | |
| CAACCACCCATTGAATTGAA+AGG | + | chr7.1:88391543-88391562 | None:intergenic | 40.0% | |
| CTCGTTCAGTTTGATAAGGT+AGG | - | chr7.1:88390839-88390858 | MS.gene000324:intron | 40.0% | |
| CTTTATCGTAGGTCGACAAT+CGG | - | chr7.1:88390743-88390762 | MS.gene000324:CDS | 40.0% | |
| GAAGACAACCAAGAGAATGT+TGG | - | chr7.1:88393682-88393701 | MS.gene000324:intron | 40.0% | |
| GAGAAGAAACGCTTCATTCA+AGG | - | chr7.1:88392600-88392619 | MS.gene000324:intron | 40.0% | |
| GAGACTACATGTTTCGTTTC+TGG | - | chr7.1:88390880-88390899 | MS.gene000324:intron | 40.0% | |
| GATAAGGTAGGTTTCGGAAT+TGG | - | chr7.1:88390851-88390870 | MS.gene000324:intron | 40.0% | |
| GGTTCTCGTTCAGTTTGATA+AGG | - | chr7.1:88390835-88390854 | MS.gene000324:intron | 40.0% | |
| TGAGAATATCACTTGGGAAC+TGG | - | chr7.1:88393935-88393954 | MS.gene000324:intron | 40.0% | |
| TTAAACTGAAATGCGACCCT+AGG | + | chr7.1:88391284-88391303 | None:intergenic | 40.0% | |
| TTGTGAACTGTCTCTGACTT+GGG | + | chr7.1:88392183-88392202 | None:intergenic | 40.0% | |
| TTTCTCTGGGCAAACATCTA+TGG | - | chr7.1:88394062-88394081 | MS.gene000324:intron | 40.0% | |
| ! | ACATGTTTCGTTTCTGGATC+TGG | - | chr7.1:88390886-88390905 | MS.gene000324:intron | 40.0% |
| ! | CCCTATTTGATCCTGATTTG+TGG | + | chr7.1:88391980-88391999 | None:intergenic | 40.0% |
| ! | GGATTAGTGAAACACAGTCA+CGG | - | chr7.1:88392230-88392249 | MS.gene000324:intron | 40.0% |
| ! | TCTCATGATGATGACAACCA+TGG | - | chr7.1:88393013-88393032 | MS.gene000324:intron | 40.0% |
| !! | TGTTGGACGGGTTAAAATAG+TGG | - | chr7.1:88393699-88393718 | MS.gene000324:intron | 40.0% |
| !!! | TTTTTTGGTGAGGTGAAGCA+TGG | - | chr7.1:88391049-88391068 | MS.gene000324:intron | 40.0% |
| AATCAGAGAGACGAAGGGTT+TGG | - | chr7.1:88391194-88391213 | MS.gene000324:intron | 45.0% | |
| AATGAGTTTCGGAGGATGGA+TGG | + | chr7.1:88391737-88391756 | None:intergenic | 45.0% | |
| AATGTGCCTCACTGAGACTT+TGG | - | chr7.1:88390766-88390785 | MS.gene000324:CDS | 45.0% | |
| ACAAGGAGCTTATCATCTGC+TGG | - | chr7.1:88393777-88393796 | MS.gene000324:intron | 45.0% | |
| AGAACCTGAATCGCAATCTC+AGG | + | chr7.1:88390821-88390840 | None:intergenic | 45.0% | |
| AGCAAAAGTGACACAGCCAT+TGG | + | chr7.1:88391515-88391534 | None:intergenic | 45.0% | |
| AGCACGCCAACAACATGAAA+CGG | + | chr7.1:88393404-88393423 | None:intergenic | 45.0% | |
| ATGGTCTAACCACCAATCCA+TGG | + | chr7.1:88393805-88393824 | None:intergenic | 45.0% | |
| CAACCAAGAGAATGTTGGAC+GGG | - | chr7.1:88393687-88393706 | MS.gene000324:intron | 45.0% | |
| CGACGTTCGAACTTTATCGT+AGG | - | chr7.1:88390732-88390751 | MS.gene000324:CDS | 45.0% | |
| CTTATCATCTGCTGGTACCA+TGG | - | chr7.1:88393785-88393804 | MS.gene000324:intron | 45.0% | |
| GTAGTCTATGACTGAAGCTC+TGG | - | chr7.1:88390953-88390972 | MS.gene000324:intron | 45.0% | |
| TAACCCGTCCAACATTCTCT+TGG | + | chr7.1:88393693-88393712 | None:intergenic | 45.0% | |
| TAGTCCTGAGATTGCGATTC+AGG | - | chr7.1:88390814-88390833 | MS.gene000324:CDS | 45.0% | |
| TATGCAGATGTCCCTGTGAT+TGG | + | chr7.1:88393603-88393622 | None:intergenic | 45.0% | |
| TCTGATCACGCTCATTGTTC+CGG | - | chr7.1:88391766-88391785 | MS.gene000324:intron | 45.0% | |
| TGGTGGTTAGACCATAGTGA+CGG | - | chr7.1:88393810-88393829 | MS.gene000324:intron | 45.0% | |
| TGTGAATGAGTTTCGGAGGA+TGG | + | chr7.1:88391741-88391760 | None:intergenic | 45.0% | |
| TGTGTGTGGACACTTGTTTG+AGG | - | chr7.1:88391347-88391366 | MS.gene000324:CDS | 45.0% | |
| TTGGACGAGATGGTTCAGAA+TGG | - | chr7.1:88390785-88390804 | MS.gene000324:CDS | 45.0% | |
| ! | AGATGATAGCCTTGCACACA+AGG | - | chr7.1:88394224-88394243 | MS.gene000324:CDS | 45.0% |
| ! | CTCTTGAAAAGGTGTGGCAT+TGG | - | chr7.1:88391798-88391817 | MS.gene000324:intron | 45.0% |
| ! | TAGGTTTCGGAATTGGTGCT+AGG | - | chr7.1:88390858-88390877 | MS.gene000324:intron | 45.0% |
| !! | ACAAAGCTCTAGAACCCTTG+TGG | + | chr7.1:88392259-88392278 | None:intergenic | 45.0% |
| !! | CAGACGTAACTTGTTACGAG+TGG | - | chr7.1:88391375-88391394 | MS.gene000324:CDS | 45.0% |
| !! | CCATCTCTTTTTGAGGGAGT+GGG | - | chr7.1:88392939-88392958 | MS.gene000324:intron | 45.0% |
| !! | TCCATCTCTTTTTGAGGGAG+TGG | - | chr7.1:88392938-88392957 | MS.gene000324:intron | 45.0% |
| !! | TTAGACCATAGTGACGGATG+TGG | - | chr7.1:88393816-88393835 | MS.gene000324:intron | 45.0% |
| ACACAGTCACGGTTTCCACA+AGG | - | chr7.1:88392241-88392260 | MS.gene000324:intron | 50.0% | |
| AGAGATACGCACACTGTGTG+TGG | - | chr7.1:88391333-88391352 | MS.gene000324:CDS | 50.0% | |
| ATGTGGCCTTCAGTTCTTGC+AGG | - | chr7.1:88393833-88393852 | MS.gene000324:intron | 50.0% | |
| CACAGTCACGGTTTCCACAA+GGG | - | chr7.1:88392242-88392261 | MS.gene000324:intron | 50.0% | |
| CACTGAGACTTTGGACGAGA+TGG | - | chr7.1:88390775-88390794 | MS.gene000324:CDS | 50.0% | |
| CATCTGCTGGTACCATGGAT+TGG | - | chr7.1:88393790-88393809 | MS.gene000324:intron | 50.0% | |
| CATTTGCCGGGTATGCAGTT+TGG | - | chr7.1:88392794-88392813 | MS.gene000324:intron | 50.0% | |
| CCCACTCCCTCAAAAAGAGA+TGG | + | chr7.1:88392942-88392961 | None:intergenic | 50.0% | |
| CTGGTTCCTGCAAGAACTGA+AGG | + | chr7.1:88393842-88393861 | None:intergenic | 50.0% | |
| GGCTCAATCAGAGAGACGAA+GGG | - | chr7.1:88391189-88391208 | MS.gene000324:intron | 50.0% | |
| TCTCGTCCAAAGTCTCAGTG+AGG | + | chr7.1:88390775-88390794 | None:intergenic | 50.0% | |
| TGGCTCAATCAGAGAGACGA+AGG | - | chr7.1:88391188-88391207 | MS.gene000324:intron | 50.0% | |
| TTGGCGTGCTTAGTAGCTTG+TGG | - | chr7.1:88393414-88393433 | MS.gene000324:intron | 50.0% | |
| ! | TGGCGTGCTTAGTAGCTTGT+GGG | - | chr7.1:88393415-88393434 | MS.gene000324:intron | 50.0% |
| AGAGAGACGAAGGGTTTGGC+TGG | - | chr7.1:88391198-88391217 | MS.gene000324:intron | 55.0% | |
| GAAGGCCACATCCGTCACTA+TGG | + | chr7.1:88393824-88393843 | None:intergenic | 55.0% | |
| GCGGGATACCCTCTCAAGTT+AGG | - | chr7.1:88392538-88392557 | MS.gene000324:intron | 55.0% | |
| ! | GGGCTGCCGTTTCATGTTGT+TGG | - | chr7.1:88393395-88393414 | MS.gene000324:intron | 55.0% |
| ! | TTAGGGCAGCCTTGTGTGCA+AGG | + | chr7.1:88394236-88394255 | None:intergenic | 55.0% |
| !! | CTGCTGGTACCATGGATTGG+TGG | - | chr7.1:88393793-88393812 | MS.gene000324:intron | 55.0% |
| !! | TGAGAGGGTATCCCGCCATA+AGG | + | chr7.1:88392534-88392553 | None:intergenic | 55.0% |
| !! | TGGTAAGTGAGAGCACCCTC+AGG | - | chr7.1:88391218-88391237 | MS.gene000324:intron | 55.0% |
| TGGCTGGCAGTGTGACCTGA+GGG | + | chr7.1:88391236-88391255 | None:intergenic | 60.0% | |
| TTGGCTGGCAGTGTGACCTG+AGG | + | chr7.1:88391237-88391256 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 88390728 | 88394302 | 88390728 | ID=MS.gene000324 |
| chr7.1 | mRNA | 88390728 | 88394302 | 88390728 | ID=MS.gene000324.t1;Parent=MS.gene000324 |
| chr7.1 | exon | 88394174 | 88394302 | 88394174 | ID=MS.gene000324.t1.exon1;Parent=MS.gene000324.t1 |
| chr7.1 | CDS | 88394174 | 88394302 | 88394174 | ID=cds.MS.gene000324.t1;Parent=MS.gene000324.t1 |
| chr7.1 | exon | 88394023 | 88394073 | 88394023 | ID=MS.gene000324.t1.exon2;Parent=MS.gene000324.t1 |
| chr7.1 | CDS | 88394023 | 88394073 | 88394023 | ID=cds.MS.gene000324.t1;Parent=MS.gene000324.t1 |
| chr7.1 | exon | 88391288 | 88391420 | 88391288 | ID=MS.gene000324.t1.exon3;Parent=MS.gene000324.t1 |
| chr7.1 | CDS | 88391288 | 88391420 | 88391288 | ID=cds.MS.gene000324.t1;Parent=MS.gene000324.t1 |
| chr7.1 | exon | 88390728 | 88390843 | 88390728 | ID=MS.gene000324.t1.exon4;Parent=MS.gene000324.t1 |
| chr7.1 | CDS | 88390728 | 88390843 | 88390728 | ID=cds.MS.gene000324.t1;Parent=MS.gene000324.t1 |
| Gene Sequence |
| Protein sequence |
