AlfalfaGEDB | MS.gene000876

M. sativa cultivar XinJiangDaYe / MS.gene000876

KEGG: K02905
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0019538 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0071704 GO:0110165 GO:1901564 GO:1901566 GO:1901576
PFAM: PF01779.20

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000876.t1	XP_024637125.1	96.7	61	2	0	1	61	1	61	7.60E-24	119

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000876.t1	Q9M7X7	86.9	61	8	0	1	61	1	61	1.0e-21	103.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000876.t1	I3SRL9	96.7	61	2	0	1	61	1	61	5.5e-24	119.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene99872	MS.gene000876	PPI
MS.gene043595	MS.gene000876	PPI
MS.gene043645	MS.gene000876	PPI
MS.gene043593	MS.gene000876	PPI
MS.gene064353	MS.gene000876	PPI
MS.gene035825	MS.gene000876	PPI
MS.gene73093	MS.gene000876	PPI
MS.gene043643	MS.gene000876	PPI
MS.gene035826	MS.gene000876	PPI
MS.gene064351	MS.gene000876	PPI
MS.gene035828	MS.gene000876	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000876.t1	MTR_4g121870	96.721	61	2	0	1	61	137	197	4.71e-38	124
MS.gene000876.t1	MTR_4g121877	95.082	61	3	0	1	61	1	61	4.16e-37	118

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene000876.t1	AT3G06700	86.885	61	8	0	1	61	1	61	3.03e-32	105
MS.gene000876.t1	AT3G06700	86.885	61	8	0	1	61	1	61	3.03e-32	105
MS.gene000876.t1	AT3G06700	86.885	61	8	0	1	61	1	61	3.03e-32	105
MS.gene000876.t1	AT3G06680	83.607	61	10	0	1	61	23	83	9.66e-32	105
MS.gene000876.t1	AT3G06680	83.607	61	10	0	1	61	1	61	2.47e-31	103
MS.gene000876.t1	AT3G06680	83.607	61	10	0	1	61	1	61	2.47e-31	103

Find 13 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATGGCATCAAGAAGCCAAAA+AGG	0.372719	7.2:+67875534	MS.gene000876:CDS
TCTTGTGAGCCTTGTAAGAC+TGG	0.428046	7.2:-67875511	None:intergenic
TGTGTTTCCTCGCATACCTC+TGG	0.457559	7.2:-67875698	None:intergenic
ATCACCACACTTCCACCAAA+GGG	0.482418	7.2:+67875558	MS.gene000876:CDS
CTGAGTAATACATACCCCTT+TGG	0.488635	7.2:-67875573	None:intergenic
CGCTCACAACCAGTCTTACA+AGG	0.489194	7.2:+67875502	MS.gene000876:CDS
TCTTACAAGGCTCACAAGAA+TGG	0.521704	7.2:+67875515	MS.gene000876:CDS
AGTAATACATACCCCTTTGG+TGG	0.557801	7.2:-67875570	None:intergenic
CATCACCACACTTCCACCAA+AGG	0.580490	7.2:+67875557	MS.gene000876:CDS
TAAGGAACCAGAGGTATGCG+AGG	0.651232	7.2:+67875691	MS.gene000876:CDS
CTTGTAAGACTGGTTGTGAG+CGG	0.674336	7.2:-67875501	None:intergenic
ATACCCCTTTGGTGGAAGTG+TGG	0.685351	7.2:-67875562	None:intergenic
TCACCACACTTCCACCAAAG+GGG	0.701603	7.2:+67875559	MS.gene000876:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTACTTTTATAATTGTAGA+TGG	+	chr7.2:67875656-67875675	MS.gene000876:intron	15.0%
	AGGAAACACAACAAGAAAAA+TGG	+	chr7.2:67875711-67875730	MS.gene000876:CDS	30.0%
!	AGATGGATCCAAAGTTTTTA+AGG	+	chr7.2:67875673-67875692	MS.gene000876:intron	30.0%
!	CTCTGGTTCCTTAAAAACTT+TGG	-	chr7.2:67875684-67875703	None:intergenic	35.0%
!!	CAAAGTTTTTAAGGAACCAG+AGG	+	chr7.2:67875682-67875701	MS.gene000876:CDS	35.0%
	AGTAATACATACCCCTTTGG+TGG	-	chr7.2:67875573-67875592	None:intergenic	40.0%
	ATGGCATCAAGAAGCCAAAA+AGG	+	chr7.2:67875534-67875553	MS.gene000876:CDS	40.0%
	CTGAGTAATACATACCCCTT+TGG	-	chr7.2:67875576-67875595	None:intergenic	40.0%
	TCTTACAAGGCTCACAAGAA+TGG	+	chr7.2:67875515-67875534	MS.gene000876:CDS	40.0%
	ATCACCACACTTCCACCAAA+GGG	+	chr7.2:67875558-67875577	MS.gene000876:CDS	45.0%
!	CTTGTAAGACTGGTTGTGAG+CGG	-	chr7.2:67875504-67875523	None:intergenic	45.0%
!	TCTTGTGAGCCTTGTAAGAC+TGG	-	chr7.2:67875514-67875533	None:intergenic	45.0%
!!	GAAGTGTGGTGATGCCTTTT+TGG	-	chr7.2:67875551-67875570	None:intergenic	45.0%
	ATACCCCTTTGGTGGAAGTG+TGG	-	chr7.2:67875565-67875584	None:intergenic	50.0%
	CATCACCACACTTCCACCAA+AGG	+	chr7.2:67875557-67875576	MS.gene000876:CDS	50.0%
	CGCTCACAACCAGTCTTACA+AGG	+	chr7.2:67875502-67875521	MS.gene000876:CDS	50.0%
	TCACCACACTTCCACCAAAG+GGG	+	chr7.2:67875559-67875578	MS.gene000876:CDS	50.0%
	TGTGTTTCCTCGCATACCTC+TGG	-	chr7.2:67875701-67875720	None:intergenic	50.0%
!	TAAGGAACCAGAGGTATGCG+AGG	+	chr7.2:67875691-67875710	MS.gene000876:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	67875479	67875758	67875479	ID=MS.gene000876
chr7.2	mRNA	67875479	67875758	67875479	ID=MS.gene000876.t1;Parent=MS.gene000876
chr7.2	exon	67875479	67875580	67875479	ID=MS.gene000876.t1.exon1;Parent=MS.gene000876.t1
chr7.2	CDS	67875479	67875580	67875479	ID=cds.MS.gene000876.t1;Parent=MS.gene000876.t1
chr7.2	exon	67875675	67875758	67875675	ID=MS.gene000876.t1.exon2;Parent=MS.gene000876.t1
chr7.2	CDS	67875675	67875758	67875675	ID=cds.MS.gene000876.t1;Parent=MS.gene000876.t1

Gene Sequence	>MS.gene000876 ATGGCGAAGTCGAAGAATCACACCGCTCACAACCAGTCTTACAAGGCTCACAAGAATGGCATCAAGAAGCCAAAAAGGCATCACCACACTTCCACCAAAGGGGTATGTATTACTCAGTTTTCAATTCTTTTATTGATTTTGAAATGATTGATTTCTATTGATGATTAATAATTTTATTTTACTTTTATAATTGTAGATGGATCCAAAGTTTTTAAGGAACCAGAGGTATGCGAGGAAACACAACAAGAAAAATGGTGAAATCGCTTCTGCTGAAGAGTAA
Protein sequence	>MS.gene000876.t1 MAKSKNHTAHNQSYKAHKNGIKKPKRHHHTSTKGMDPKFLRNQRYARKHNKKNGEIASAEE

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