Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064351.t1 | XP_013459866.1 | 100 | 101 | 0 | 0 | 1 | 101 | 1 | 101 | 3.00E-49 | 204.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064351.t1 | P55852 | 92.3 | 91 | 7 | 0 | 9 | 99 | 4 | 94 | 1.4e-42 | 173.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064351.t1 | I3SU86 | 100.0 | 101 | 0 | 0 | 1 | 101 | 1 | 101 | 2.1e-49 | 204.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064351.t1 | MTR_3g053540 | 100.000 | 101 | 0 | 0 | 1 | 101 | 1 | 101 | 1.20e-72 | 211 |
| MS.gene064351.t1 | MTR_3g053520 | 98.020 | 101 | 2 | 0 | 1 | 101 | 1 | 101 | 2.23e-71 | 207 |
| MS.gene064351.t1 | MTR_8g010480 | 59.459 | 74 | 30 | 0 | 21 | 94 | 165 | 238 | 2.35e-27 | 102 |
| MS.gene064351.t1 | MTR_8g010480 | 61.972 | 71 | 27 | 0 | 23 | 93 | 244 | 314 | 1.33e-22 | 89.4 |
| MS.gene064351.t1 | MTR_8g010480 | 55.128 | 78 | 31 | 1 | 20 | 93 | 83 | 160 | 9.56e-22 | 87.0 |
| MS.gene064351.t1 | MTR_8g010480 | 43.678 | 87 | 46 | 2 | 15 | 100 | 2 | 86 | 5.60e-16 | 71.6 |
| MS.gene064351.t1 | MTR_8g010490 | 46.237 | 93 | 49 | 1 | 3 | 95 | 10 | 101 | 1.60e-26 | 97.1 |
| MS.gene064351.t1 | MTR_8g010490 | 52.632 | 76 | 36 | 0 | 23 | 98 | 108 | 183 | 7.15e-22 | 85.1 |
| MS.gene064351.t1 | MTR_8g085340 | 38.710 | 93 | 56 | 1 | 10 | 101 | 14 | 106 | 2.91e-18 | 74.3 |
| MS.gene064351.t1 | MTR_8g085320 | 33.333 | 99 | 65 | 1 | 1 | 98 | 1 | 99 | 8.80e-18 | 72.4 |
| MS.gene064351.t1 | MTR_3g053640 | 50.000 | 70 | 35 | 0 | 20 | 89 | 82 | 151 | 1.19e-15 | 70.9 |
| MS.gene064351.t1 | MTR_3g053640 | 51.562 | 64 | 31 | 0 | 29 | 92 | 15 | 78 | 1.71e-15 | 70.5 |
| MS.gene064351.t1 | MTR_0007s0030 | 64.103 | 39 | 14 | 0 | 48 | 86 | 1 | 39 | 1.53e-14 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064351.t1 | AT4G26840 | 90.000 | 90 | 9 | 0 | 7 | 96 | 2 | 91 | 3.86e-57 | 171 |
| MS.gene064351.t1 | AT5G55160 | 90.426 | 94 | 6 | 2 | 5 | 98 | 2 | 92 | 4.53e-57 | 171 |
| MS.gene064351.t1 | AT5G55160 | 79.439 | 107 | 6 | 3 | 5 | 98 | 2 | 105 | 1.64e-53 | 163 |
| MS.gene064351.t1 | AT5G55856 | 49.438 | 89 | 45 | 0 | 10 | 98 | 2 | 90 | 1.38e-26 | 94.4 |
| MS.gene064351.t1 | AT5G55170 | 51.685 | 89 | 41 | 1 | 12 | 98 | 5 | 93 | 1.03e-25 | 92.8 |
| MS.gene064351.t1 | AT5G55855 | 47.674 | 86 | 45 | 0 | 13 | 98 | 5 | 90 | 2.13e-24 | 89.0 |
| MS.gene064351.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 9.67e-23 | 85.1 |
| MS.gene064351.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 9.67e-23 | 85.1 |
| MS.gene064351.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 9.67e-23 | 85.1 |
| MS.gene064351.t1 | AT5G55170 | 48.315 | 89 | 40 | 2 | 12 | 98 | 5 | 89 | 2.83e-21 | 81.3 |
| MS.gene064351.t1 | AT2G32765 | 37.778 | 90 | 55 | 1 | 10 | 98 | 14 | 103 | 1.98e-20 | 79.0 |
| MS.gene064351.t1 | AT5G55170 | 49.296 | 71 | 34 | 1 | 12 | 80 | 5 | 75 | 7.39e-18 | 72.4 |
| MS.gene064351.t1 | AT5G48700 | 42.222 | 90 | 50 | 2 | 11 | 98 | 19 | 108 | 9.23e-18 | 72.4 |
| MS.gene064351.t1 | AT5G48710 | 39.437 | 71 | 42 | 1 | 12 | 81 | 17 | 87 | 5.73e-14 | 62.4 |
Find 30 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGGAATGAAGTGTTCTTT+AGG | 0.336414 | 3.1:-40570488 | MS.gene064351:CDS |
| GATGTGAGCACCACCTGCTT+CGG | 0.338312 | 3.1:+40572722 | None:intergenic |
| TTCTTGTCTTCCTCGGTGTT+GGG | 0.340524 | 3.1:+40572747 | None:intergenic |
| ATGTGAGCACCACCTGCTTC+GGG | 0.344186 | 3.1:+40572723 | None:intergenic |
| CTTCTTGTCTTCCTCGGTGT+TGG | 0.351501 | 3.1:+40572746 | None:intergenic |
| TCGTTAACACAAACCTCATC+TGG | 0.369553 | 3.1:+40570348 | None:intergenic |
| GAACCTGGCCCTTGACTTTG+AGG | 0.387240 | 3.1:+40572697 | None:intergenic |
| TTCGGGCTTCTTGTCTTCCT+CGG | 0.415650 | 3.1:+40572740 | None:intergenic |
| GAAGACAAGAAGCCCGAAGC+AGG | 0.445397 | 3.1:-40572735 | MS.gene064351:CDS |
| AAGTGTTCTTTAGGATCAAA+AGG | 0.453788 | 3.1:-40570479 | MS.gene064351:CDS |
| CGGAAACTGAAGATGTCGTC+AGG | 0.500483 | 3.1:-40572780 | None:intergenic |
| GTCTTCCTCGGTGTTGGGAG+CGG | 0.500639 | 3.1:+40572752 | None:intergenic |
| TTGCAGCTGGAAATGGAAGA+TGG | 0.502872 | 3.1:-40570246 | MS.gene064351:intron |
| CGTTAACACAAACCTCATCT+GGG | 0.533016 | 3.1:+40570349 | None:intergenic |
| GACGCCATGCTTCATCAGAC+AGG | 0.558207 | 3.1:-40570213 | MS.gene064351:CDS |
| CATCTGGGGTCTGCTCTGCA+CGG | 0.560850 | 3.1:+40570364 | None:intergenic |
| TGCAGCTGGAAATGGAAGAT+GGG | 0.572615 | 3.1:-40570245 | MS.gene064351:intron |
| CAACCTCAAAGTCAAGGGCC+AGG | 0.579447 | 3.1:-40572700 | MS.gene064351:intron |
| ACCTCCTGTCTGATGAAGCA+TGG | 0.580486 | 3.1:+40570209 | None:intergenic |
| CCCATCAAATAGAAAAGCAA+TGG | 0.583133 | 3.1:+40570395 | None:intergenic |
| TCACATCAACCTCAAAGTCA+AGG | 0.600994 | 3.1:-40572706 | MS.gene064351:CDS |
| CACATCAACCTCAAAGTCAA+GGG | 0.612548 | 3.1:-40572705 | MS.gene064351:CDS |
| GACAAGAAGCCCGAAGCAGG+TGG | 0.627526 | 3.1:-40572732 | MS.gene064351:CDS |
| GCCATGCTTCATCAGACAGG+AGG | 0.629302 | 3.1:-40570210 | MS.gene064351:CDS |
| TGCAGAGCAGACCCCAGATG+AGG | 0.644394 | 3.1:-40570361 | MS.gene064351:intron |
| TTACTGTGATCGTCAGTCTG+TGG | 0.670146 | 3.1:-40570427 | MS.gene064351:CDS |
| GCAGCTGGAAATGGAAGATG+GGG | 0.677394 | 3.1:-40570244 | MS.gene064351:intron |
| CTGGGGTCTGCTCTGCACGG+AGG | 0.678982 | 3.1:+40570367 | None:intergenic |
| GTTAACACAAACCTCATCTG+GGG | 0.716440 | 3.1:+40570350 | None:intergenic |
| TGCAGCCGCTCCCAACACCG+AGG | 0.722402 | 3.1:-40572757 | MS.gene064351:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAACATGTTTAAATTAA+TGG | - | chr3.1:40571960-40571979 | MS.gene064351:intron | 10.0% |
| !! | AAAAAATGTGTAAAAAAGAA+AGG | + | chr3.1:40570550-40570569 | None:intergenic | 15.0% |
| !! | AAATTAAATAAGATTGTTCT+AGG | - | chr3.1:40570723-40570742 | MS.gene064351:intron | 15.0% |
| !!! | AAATTATTGAGAATTTTTTC+TGG | - | chr3.1:40571197-40571216 | MS.gene064351:intron | 15.0% |
| !!! | AATTATTGAGAATTTTTTCT+GGG | - | chr3.1:40571198-40571217 | MS.gene064351:intron | 15.0% |
| !!! | ATTCAATCGTTAATTTTTTT+AGG | - | chr3.1:40570352-40570371 | MS.gene064351:intron | 15.0% |
| !!! | ATTTTAATATGTTTTAGGAT+GGG | - | chr3.1:40572459-40572478 | MS.gene064351:intron | 15.0% |
| !!! | TATTTTATTGAATTTGTGTT+GGG | - | chr3.1:40571600-40571619 | MS.gene064351:intron | 15.0% |
| !!! | TTATTTTATTGAATTTGTGT+TGG | - | chr3.1:40571599-40571618 | MS.gene064351:intron | 15.0% |
| !!! | TTCAATCGTTAATTTTTTTA+GGG | - | chr3.1:40570353-40570372 | MS.gene064351:intron | 15.0% |
| !!! | TTTTTACATGTTTAGATTAA+CGG | - | chr3.1:40571442-40571461 | MS.gene064351:intron | 15.0% |
| !! | AAAAACAAAAACCCTAAAAT+CGG | + | chr3.1:40570308-40570327 | None:intergenic | 20.0% |
| !! | AAATAGCAATCAAATTAAAC+CGG | + | chr3.1:40571377-40571396 | None:intergenic | 20.0% |
| !! | ACAAGATAACAATATCATAT+AGG | + | chr3.1:40572248-40572267 | None:intergenic | 20.0% |
| !!! | ACACATTTTTTTTTTAGATC+TGG | - | chr3.1:40570559-40570578 | MS.gene064351:intron | 20.0% |
| !!! | AGGAGTATTAATTTTATCAT+GGG | - | chr3.1:40570503-40570522 | MS.gene064351:intron | 20.0% |
| !!! | AGTTATAACATTTTCAGAAA+TGG | - | chr3.1:40572323-40572342 | MS.gene064351:intron | 20.0% |
| !!! | GATTTTAATATGTTTTAGGA+TGG | - | chr3.1:40572458-40572477 | MS.gene064351:intron | 20.0% |
| !!! | GTATATGATTTGTTGAAAAT+AGG | - | chr3.1:40571918-40571937 | MS.gene064351:intron | 20.0% |
| !!! | TTGGGATTTTAATATGTTTT+AGG | - | chr3.1:40572454-40572473 | MS.gene064351:intron | 20.0% |
| !!! | TTTGTAAGGAATTTTTGTTT+TGG | - | chr3.1:40571637-40571656 | MS.gene064351:intron | 20.0% |
| !!! | TTTTTATTGAATTTGTGTGT+TGG | - | chr3.1:40572108-40572127 | MS.gene064351:intron | 20.0% |
| ! | AATACTCCTCTTTAATCTAA+TGG | + | chr3.1:40570492-40570511 | None:intergenic | 25.0% |
| ! | AGAACTGTAAATTTCAATCA+TGG | + | chr3.1:40571103-40571122 | None:intergenic | 25.0% |
| ! | CCTTACAAATTGTGTATAAA+CGG | + | chr3.1:40571626-40571645 | None:intergenic | 25.0% |
| ! | GCAAATTTATTGTGTTAACT+TGG | - | chr3.1:40570622-40570641 | MS.gene064351:intron | 25.0% |
| ! | TATCATTCTTAGTCAAAGAA+AGG | - | chr3.1:40570866-40570885 | MS.gene064351:intron | 25.0% |
| ! | TGTTAGAACAACAAACTTTA+AGG | + | chr3.1:40570819-40570838 | None:intergenic | 25.0% |
| !! | AATGATGATGATGATGATAA+TGG | - | chr3.1:40570946-40570965 | MS.gene064351:intron | 25.0% |
| !! | AGAGTTATGTATGCTAATTT+TGG | - | chr3.1:40572435-40572454 | MS.gene064351:intron | 25.0% |
| !! | GAGTTATGTATGCTAATTTT+GGG | - | chr3.1:40572436-40572455 | MS.gene064351:intron | 25.0% |
| !! | GGTAAAGTTTTACATTTATC+TGG | - | chr3.1:40570887-40570906 | MS.gene064351:intron | 25.0% |
| !!! | GAGGAGTATTAATTTTATCA+TGG | - | chr3.1:40570502-40570521 | MS.gene064351:intron | 25.0% |
| AAAAACACCATCAAGATGTT+TGG | + | chr3.1:40572090-40572109 | None:intergenic | 30.0% | |
| AAAAATAACTTTCCCATGGT+GGG | - | chr3.1:40571320-40571339 | MS.gene064351:intron | 30.0% | |
| AAAGCAAAATTGTTGATGTG+AGG | + | chr3.1:40570757-40570776 | None:intergenic | 30.0% | |
| AACAATCACAAACACAACAA+AGG | + | chr3.1:40570388-40570407 | None:intergenic | 30.0% | |
| AAGCAAAATTGTTGATGTGA+GGG | + | chr3.1:40570756-40570775 | None:intergenic | 30.0% | |
| AGTGATTCATGTTGAAATCA+CGG | - | chr3.1:40571031-40571050 | MS.gene064351:intron | 30.0% | |
| CAAATATTGATGTTGCGTTA+TGG | + | chr3.1:40571711-40571730 | None:intergenic | 30.0% | |
| CCGTTTATACACAATTTGTA+AGG | - | chr3.1:40571623-40571642 | MS.gene064351:intron | 30.0% | |
| CTGTTTACATACCATATGTT+AGG | - | chr3.1:40572132-40572151 | MS.gene064351:intron | 30.0% | |
| GATAACAGAAACCCAAAAAA+GGG | + | chr3.1:40571782-40571801 | None:intergenic | 30.0% | |
| TATTTGCAAAATCCTTAACG+CGG | - | chr3.1:40571725-40571744 | MS.gene064351:intron | 30.0% | |
| TGATAACAGAAACCCAAAAA+AGG | + | chr3.1:40571783-40571802 | None:intergenic | 30.0% | |
| TGATTCTGATAAGAACTACA+CGG | + | chr3.1:40571511-40571530 | None:intergenic | 30.0% | |
| TTTCAGCCATTAGATTAAAG+AGG | - | chr3.1:40570483-40570502 | MS.gene064351:CDS | 30.0% | |
| ! | ACCATATGTTAGGACTTTTT+GGG | - | chr3.1:40572142-40572161 | MS.gene064351:intron | 30.0% |
| ! | CACATCAACAATTTTGCTTT+TGG | - | chr3.1:40570757-40570776 | MS.gene064351:intron | 30.0% |
| ! | CTTGTTTAAAACCTTGGTTA+GGG | - | chr3.1:40571755-40571774 | MS.gene064351:intron | 30.0% |
| ! | GATTGTTTGTTGAAGAACTA+GGG | - | chr3.1:40570401-40570420 | MS.gene064351:CDS | 30.0% |
| ! | GTTTCTGTTATTAGTTTCGT+TGG | - | chr3.1:40572164-40572183 | MS.gene064351:intron | 30.0% |
| ! | TACCATATGTTAGGACTTTT+TGG | - | chr3.1:40572141-40572160 | MS.gene064351:intron | 30.0% |
| ! | TGAAAATATTTTGTTGCAGC+TGG | - | chr3.1:40572706-40572725 | MS.gene064351:CDS | 30.0% |
| ! | TGATTGTTTGTTGAAGAACT+AGG | - | chr3.1:40570400-40570419 | MS.gene064351:CDS | 30.0% |
| !! | AAGTGTTCTTTAGGATCAAA+AGG | - | chr3.1:40572486-40572505 | MS.gene064351:intron | 30.0% |
| !! | CCATTGCTTTTCTATTTGAT+GGG | - | chr3.1:40572570-40572589 | MS.gene064351:intron | 30.0% |
| !!! | GGAAAGTTATTTTTGTCCAT+TGG | + | chr3.1:40571314-40571333 | None:intergenic | 30.0% |
| AAAACAAATCAGATCTGGAG+CGG | - | chr3.1:40570842-40570861 | MS.gene064351:intron | 35.0% | |
| AAGCTATTCTGATCAGTGTA+TGG | - | chr3.1:40571141-40571160 | MS.gene064351:intron | 35.0% | |
| AATCCAAACATAACTGAGAC+TGG | - | chr3.1:40571564-40571583 | MS.gene064351:intron | 35.0% | |
| ACCCAAAAAGTCCTAACATA+TGG | + | chr3.1:40572146-40572165 | None:intergenic | 35.0% | |
| ACGATATGGTTGAAGAACTA+GGG | - | chr3.1:40571880-40571899 | MS.gene064351:intron | 35.0% | |
| AGCAATCAAATTAAACCGGT+GGG | + | chr3.1:40571373-40571392 | None:intergenic | 35.0% | |
| AGTTATGTTTGGATTGACGA+TGG | + | chr3.1:40571559-40571578 | None:intergenic | 35.0% | |
| CAAAAATAACTTTCCCATGG+TGG | - | chr3.1:40571319-40571338 | MS.gene064351:intron | 35.0% | |
| CACACAAAACAAATCAGATC+TGG | - | chr3.1:40570837-40570856 | MS.gene064351:intron | 35.0% | |
| CATCAAGATGTTTGGATTGA+AGG | + | chr3.1:40572082-40572101 | None:intergenic | 35.0% | |
| CCCATCAAATAGAAAAGCAA+TGG | + | chr3.1:40572573-40572592 | None:intergenic | 35.0% | |
| CTTCAATCCAAACATCTTGA+TGG | - | chr3.1:40572080-40572099 | MS.gene064351:intron | 35.0% | |
| GAAAAAAACTTTCCCATGGT+GGG | + | chr3.1:40570467-40570486 | None:intergenic | 35.0% | |
| GCAGTTCTTATCAAATCACT+TGG | - | chr3.1:40572033-40572052 | MS.gene064351:intron | 35.0% | |
| GCGTTCATGTAAAAACATGT+TGG | - | chr3.1:40572290-40572309 | MS.gene064351:intron | 35.0% | |
| GGACAAAAATAACTTTCCCA+TGG | - | chr3.1:40571316-40571335 | MS.gene064351:intron | 35.0% | |
| TACGATATGGTTGAAGAACT+AGG | - | chr3.1:40571879-40571898 | MS.gene064351:intron | 35.0% | |
| TAGCAATCAAATTAAACCGG+TGG | + | chr3.1:40571374-40571393 | None:intergenic | 35.0% | |
| TAGTTCTTATCAGAATCACC+TGG | - | chr3.1:40571513-40571532 | MS.gene064351:intron | 35.0% | |
| TGAAAAAAACTTTCCCATGG+TGG | + | chr3.1:40570468-40570487 | None:intergenic | 35.0% | |
| TGAGTTTCACAAAATCACTG+CGG | - | chr3.1:40571465-40571484 | MS.gene064351:intron | 35.0% | |
| TGATGTCTACAAACTTCTGA+CGG | + | chr3.1:40572401-40572420 | None:intergenic | 35.0% | |
| ! | AACTTGTTTCCTGTACGATA+TGG | - | chr3.1:40571866-40571885 | MS.gene064351:intron | 35.0% |
| ! | ATGGGAATGAAGTGTTCTTT+AGG | - | chr3.1:40572477-40572496 | MS.gene064351:intron | 35.0% |
| ! | CATGTTCAACTTGTTCTTTC+AGG | - | chr3.1:40570595-40570614 | MS.gene064351:intron | 35.0% |
| ! | CCTTGTTTAAAACCTTGGTT+AGG | - | chr3.1:40571754-40571773 | MS.gene064351:intron | 35.0% |
| ! | CTTTTGGTCACTGAGATTTT+TGG | - | chr3.1:40570773-40570792 | MS.gene064351:intron | 35.0% |
| ! | TATTTTGTTGCAGCTGGAAA+TGG | - | chr3.1:40572712-40572731 | MS.gene064351:CDS | 35.0% |
| ! | TTTTGTCCATTGGATCAACA+AGG | + | chr3.1:40571304-40571323 | None:intergenic | 35.0% |
| !! | CACCAGAGATTGATTTTGTT+GGG | - | chr3.1:40571008-40571027 | MS.gene064351:intron | 35.0% |
| !! | GCCATTGCTTTTCTATTTGA+TGG | - | chr3.1:40572569-40572588 | MS.gene064351:intron | 35.0% |
| !! | TTGTTTTACTCATGGTTGAG+AGG | - | chr3.1:40571221-40571240 | MS.gene064351:intron | 35.0% |
| !! | TTTCTGGGTTGTTTTACTCA+TGG | - | chr3.1:40571213-40571232 | MS.gene064351:intron | 35.0% |
| !!! | ACCAAGGTTTTAAACAAGGT+CGG | + | chr3.1:40571753-40571772 | None:intergenic | 35.0% |
| !!! | CCTAACCAAGGTTTTAAACA+AGG | + | chr3.1:40571757-40571776 | None:intergenic | 35.0% |
| !!! | GGTGGCATTTTGATTTAATG+AGG | - | chr3.1:40572001-40572020 | MS.gene064351:intron | 35.0% |
| !!! | TGGAAACGATGCATTGATTT+TGG | - | chr3.1:40571657-40571676 | MS.gene064351:intron | 35.0% |
| AAACCGGTGGGATTTAGTAT+GGG | + | chr3.1:40571361-40571380 | None:intergenic | 40.0% | |
| ACACCAGTCTCAGTTATGTT+TGG | + | chr3.1:40571570-40571589 | None:intergenic | 40.0% | |
| AGTGTTCCTTGTTGATCCAA+TGG | - | chr3.1:40571295-40571314 | MS.gene064351:intron | 40.0% | |
| ATCAGTGTATGGAGAGATGA+GGG | - | chr3.1:40571152-40571171 | MS.gene064351:intron | 40.0% | |
| CAAGATGTTTGGATTGAAGG+TGG | + | chr3.1:40572079-40572098 | None:intergenic | 40.0% | |
| CACATCAACCTCAAAGTCAA+GGG | - | chr3.1:40570260-40570279 | MS.gene064351:intron | 40.0% | |
| CCAACAAAATCAATCTCTGG+TGG | + | chr3.1:40571010-40571029 | None:intergenic | 40.0% | |
| CGTTAACACAAACCTCATCT+GGG | + | chr3.1:40572619-40572638 | None:intergenic | 40.0% | |
| CTCCCAACAAAATCAATCTC+TGG | + | chr3.1:40571013-40571032 | None:intergenic | 40.0% | |
| GAACTAGGGTTAATCTCACT+AGG | - | chr3.1:40571894-40571913 | MS.gene064351:intron | 40.0% | |
| GGCTGAAAAAAACTTTCCCA+TGG | + | chr3.1:40570471-40570490 | None:intergenic | 40.0% | |
| GTTAACACAAACCTCATCTG+GGG | + | chr3.1:40572618-40572637 | None:intergenic | 40.0% | |
| GTTCTTCAACCATATCGTAC+AGG | + | chr3.1:40571878-40571897 | None:intergenic | 40.0% | |
| GTTTGGATTGAAGGTGGAAT+TGG | + | chr3.1:40572073-40572092 | None:intergenic | 40.0% | |
| GTTTGGATTGACGATGGAAT+TGG | + | chr3.1:40571553-40571572 | None:intergenic | 40.0% | |
| TAAACCGGTGGGATTTAGTA+TGG | + | chr3.1:40571362-40571381 | None:intergenic | 40.0% | |
| TCACATCAACCTCAAAGTCA+AGG | - | chr3.1:40570259-40570278 | MS.gene064351:intron | 40.0% | |
| TCGTTAACACAAACCTCATC+TGG | + | chr3.1:40572620-40572639 | None:intergenic | 40.0% | |
| TCTCTGGTGGGATTTAGTAT+GGG | - | chr3.1:40570426-40570445 | MS.gene064351:CDS | 40.0% | |
| TGGTGAACTTGACAAACTCA+CGG | - | chr3.1:40571980-40571999 | MS.gene064351:intron | 40.0% | |
| TTCTCTGGTGGGATTTAGTA+TGG | - | chr3.1:40570425-40570444 | MS.gene064351:CDS | 40.0% | |
| TTGAAGAACTAGGGTTTCTC+TGG | - | chr3.1:40570410-40570429 | MS.gene064351:CDS | 40.0% | |
| TTTCCCATACTAAATCCCAC+CGG | - | chr3.1:40571355-40571374 | MS.gene064351:intron | 40.0% | |
| ! | TGTCTCTTGCTCCGATTTTA+GGG | - | chr3.1:40570294-40570313 | MS.gene064351:intron | 40.0% |
| ! | TTGTCTCTTGCTCCGATTTT+AGG | - | chr3.1:40570293-40570312 | MS.gene064351:intron | 40.0% |
| !! | CCACCAGAGATTGATTTTGT+TGG | - | chr3.1:40571007-40571026 | MS.gene064351:intron | 40.0% |
| !!! | CAAGGTTTTAAACAAGGTCG+GGG | + | chr3.1:40571751-40571770 | None:intergenic | 40.0% |
| !!! | CCAAGGTTTTAAACAAGGTC+GGG | + | chr3.1:40571752-40571771 | None:intergenic | 40.0% |
| !!! | GTCACTGAGATTTTTGGCAA+TGG | - | chr3.1:40570779-40570798 | MS.gene064351:intron | 40.0% |
| !!! | TTGGTTAGGGTCCCTTTTTT+GGG | - | chr3.1:40571768-40571787 | MS.gene064351:intron | 40.0% |
| AAGAACTAGGGTTTCTCTGG+TGG | - | chr3.1:40570413-40570432 | MS.gene064351:CDS | 45.0% | |
| AGAACTAGGGTTTCTCTGGT+GGG | - | chr3.1:40570414-40570433 | MS.gene064351:CDS | 45.0% | |
| CAAAAAAGGGACCCTAACCA+AGG | + | chr3.1:40571769-40571788 | None:intergenic | 45.0% | |
| GATCAGTGTATGGAGAGATG+AGG | - | chr3.1:40571151-40571170 | MS.gene064351:intron | 45.0% | |
| GGTGGGATTTAGTATGGGAA+AGG | - | chr3.1:40570431-40570450 | MS.gene064351:CDS | 45.0% | |
| GGTGGGATTTAGTATGGGAA+AGG | + | chr3.1:40570450-40570431 | None:intergenic | 45.0% | |
| TGAACTTGACAAACTCACGG+TGG | - | chr3.1:40571983-40572002 | MS.gene064351:intron | 45.0% | |
| TGCAGCTGGAAATGGAAGAT+GGG | - | chr3.1:40572720-40572739 | MS.gene064351:CDS | 45.0% | |
| TTACTGTGATCGTCAGTCTG+TGG | - | chr3.1:40572538-40572557 | MS.gene064351:intron | 45.0% | |
| TTGCAGCTGGAAATGGAAGA+TGG | - | chr3.1:40572719-40572738 | MS.gene064351:CDS | 45.0% | |
| TTGGCAAAATCACAGTGACC+AGG | + | chr3.1:40571534-40571553 | None:intergenic | 45.0% | |
| ! | CCCGACCTTGTTTAAAACCT+TGG | - | chr3.1:40571749-40571768 | MS.gene064351:intron | 45.0% |
| !! | TTCTTGTCTTCCTCGGTGTT+GGG | + | chr3.1:40570221-40570240 | None:intergenic | 45.0% |
| !!! | CTTGGTTAGGGTCCCTTTTT+TGG | - | chr3.1:40571767-40571786 | MS.gene064351:intron | 45.0% |
| ACCTCCTGTCTGATGAAGCA+TGG | + | chr3.1:40572759-40572778 | None:intergenic | 50.0% | |
| GAGCAAGAGACAAACGAACC+TGG | + | chr3.1:40570286-40570305 | None:intergenic | 50.0% | |
| GCAGCTGGAAATGGAAGATG+GGG | - | chr3.1:40572721-40572740 | MS.gene064351:CDS | 50.0% | |
| TTCGGGCTTCTTGTCTTCCT+CGG | + | chr3.1:40570228-40570247 | None:intergenic | 50.0% | |
| ! | AGGAGAGTTGTTTCCCACCA+TGG | - | chr3.1:40570451-40570470 | MS.gene064351:CDS | 50.0% |
| ! | AGGAGAGTTGTTTCCCACCA+TGG | + | chr3.1:40570470-40570451 | None:intergenic | 50.0% |
| ! | CTTCTTGTCTTCCTCGGTGT+TGG | + | chr3.1:40570222-40570241 | None:intergenic | 50.0% |
| ! | GGAGAGTTGTTTCCCACCAT+GGG | - | chr3.1:40570452-40570471 | MS.gene064351:CDS | 50.0% |
| ! | GGAGAGTTGTTTCCCACCAT+GGG | + | chr3.1:40570471-40570452 | None:intergenic | 50.0% |
| ATGTGAGCACCACCTGCTTC+GGG | + | chr3.1:40570245-40570264 | None:intergenic | 55.0% | |
| CAACCTCAAAGTCAAGGGCC+AGG | - | chr3.1:40570265-40570284 | MS.gene064351:intron | 55.0% | |
| GAACCTGGCCCTTGACTTTG+AGG | + | chr3.1:40570271-40570290 | None:intergenic | 55.0% | |
| GAAGACAAGAAGCCCGAAGC+AGG | - | chr3.1:40570230-40570249 | MS.gene064351:CDS | 55.0% | |
| GACGCCATGCTTCATCAGAC+AGG | - | chr3.1:40572752-40572771 | MS.gene064351:CDS | 55.0% | |
| GATGTGAGCACCACCTGCTT+CGG | + | chr3.1:40570246-40570265 | None:intergenic | 55.0% | |
| GCCATGCTTCATCAGACAGG+AGG | - | chr3.1:40572755-40572774 | MS.gene064351:CDS | 55.0% | |
| GACAAGAAGCCCGAAGCAGG+TGG | - | chr3.1:40570233-40570252 | MS.gene064351:CDS | 60.0% | |
| TGCAGAGCAGACCCCAGATG+AGG | - | chr3.1:40572604-40572623 | MS.gene064351:intron | 60.0% | |
| ! | CATCTGGGGTCTGCTCTGCA+CGG | + | chr3.1:40572604-40572623 | None:intergenic | 60.0% |
| !! | GTCTTCCTCGGTGTTGGGAG+CGG | + | chr3.1:40570216-40570235 | None:intergenic | 60.0% |
| ACAAGGTCGGGGCCGCGTTA+AGG | + | chr3.1:40571740-40571759 | None:intergenic | 65.0% | |
| CTGGGGTCTGCTCTGCACGG+AGG | + | chr3.1:40572601-40572620 | None:intergenic | 70.0% | |
| TGCAGCCGCTCCCAACACCG+AGG | - | chr3.1:40570208-40570227 | MS.gene064351:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 40570197 | 40572790 | 40570197 | ID=MS.gene064351 |
| chr3.1 | mRNA | 40570197 | 40572790 | 40570197 | ID=MS.gene064351.t1;Parent=MS.gene064351 |
| chr3.1 | exon | 40572701 | 40572790 | 40572701 | ID=MS.gene064351.t1.exon1;Parent=MS.gene064351.t1 |
| chr3.1 | CDS | 40572701 | 40572790 | 40572701 | ID=cds.MS.gene064351.t1;Parent=MS.gene064351.t1 |
| chr3.1 | exon | 40570362 | 40570511 | 40570362 | ID=MS.gene064351.t1.exon2;Parent=MS.gene064351.t1 |
| chr3.1 | CDS | 40570362 | 40570511 | 40570362 | ID=cds.MS.gene064351.t1;Parent=MS.gene064351.t1 |
| chr3.1 | exon | 40570197 | 40570262 | 40570197 | ID=MS.gene064351.t1.exon3;Parent=MS.gene064351.t1 |
| chr3.1 | CDS | 40570197 | 40570262 | 40570197 | ID=cds.MS.gene064351.t1;Parent=MS.gene064351.t1 |
| Gene Sequence |
| Protein sequence |
