AlfalfaGEDB | MS.gene043595

M. sativa cultivar XinJiangDaYe / MS.gene043595

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515
PFAM: PF11976.11

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043595.t1	XP_013459866.1	99	101	1	0	1	101	1	101	8.70E-49	202.6

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043595.t1	P55852	93.4	91	6	0	9	99	4	94	8.0e-43	174.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043595.t1	I3SU86	99.0	101	1	0	1	101	1	101	6.2e-49	202.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene004126	MS.gene043595	PPI
MS.gene97105	MS.gene043595	PPI
MS.gene047198	MS.gene043595	PPI
MS.gene040651	MS.gene043595	PPI
MS.gene043595	MS.gene072056	PPI
MS.gene068200	MS.gene043595	PPI
MS.gene72917	MS.gene043595	PPI
MS.gene043595	MS.gene87624	PPI
MS.gene043595	MS.gene49426	PPI
MS.gene043595	MS.gene000876	PPI
MS.gene46608	MS.gene043595	PPI
MS.gene043595	MS.gene003501	PPI
MS.gene000714	MS.gene043595	PPI
MS.gene043595	MS.gene23314	PPI
MS.gene90954	MS.gene043595	PPI
MS.gene060427	MS.gene043595	PPI
MS.gene04418	MS.gene043595	PPI
MS.gene043595	MS.gene024895	PPI
MS.gene79130	MS.gene043595	PPI
MS.gene67743	MS.gene043595	PPI
MS.gene036740	MS.gene043595	PPI
MS.gene043595	MS.gene55782	PPI
MS.gene99648	MS.gene043595	PPI
MS.gene043595	MS.gene84016	PPI
MS.gene042598	MS.gene043595	PPI
MS.gene043595	MS.gene042298	PPI
MS.gene056174	MS.gene043595	PPI
MS.gene009372	MS.gene043595	PPI
MS.gene95527	MS.gene043595	PPI
MS.gene000884	MS.gene043595	PPI
MS.gene77822	MS.gene043595	PPI
MS.gene037392	MS.gene043595	PPI
MS.gene043595	MS.gene65249	PPI
MS.gene04696	MS.gene043595	PPI
MS.gene047316	MS.gene043595	PPI
MS.gene24295	MS.gene043595	PPI
MS.gene52738	MS.gene043595	PPI
MS.gene06236	MS.gene043595	PPI
MS.gene09414	MS.gene043595	PPI
MS.gene92318	MS.gene043595	PPI
MS.gene95916	MS.gene043595	PPI
MS.gene043595	MS.gene015586	PPI
MS.gene043595	MS.gene08465	PPI
MS.gene055512	MS.gene043595	PPI
MS.gene05640	MS.gene043595	PPI
MS.gene043595	MS.gene019309	PPI
MS.gene90957	MS.gene043595	PPI
MS.gene91844	MS.gene043595	PPI
MS.gene46640	MS.gene043595	PPI
MS.gene043595	MS.gene92665	PPI
MS.gene62561	MS.gene043595	PPI
MS.gene016662	MS.gene043595	PPI
MS.gene035362	MS.gene043595	PPI
MS.gene043595	MS.gene040295	PPI
MS.gene043595	MS.gene62560	PPI
MS.gene043595	MS.gene014108	PPI
MS.gene043595	MS.gene69993	PPI
MS.gene95559	MS.gene043595	PPI
MS.gene043595	MS.gene66973	PPI
MS.gene000128	MS.gene043595	PPI
MS.gene77911	MS.gene043595	PPI
MS.gene043595	MS.gene000883	PPI
MS.gene043595	MS.gene80094	PPI
MS.gene95256	MS.gene043595	PPI
MS.gene043595	MS.gene048913	PPI
MS.gene041836	MS.gene043595	PPI
MS.gene93104	MS.gene043595	PPI
MS.gene043595	MS.gene64653	PPI
MS.gene042297	MS.gene043595	PPI
MS.gene000879	MS.gene043595	PPI
MS.gene043595	MS.gene52097	PPI
MS.gene043595	MS.gene78481	PPI
MS.gene040294	MS.gene043595	PPI
MS.gene92710	MS.gene043595	PPI
MS.gene060432	MS.gene043595	PPI
MS.gene043595	MS.gene040292	PPI
MS.gene060429	MS.gene043595	PPI
MS.gene62563	MS.gene043595	PPI
MS.gene04079	MS.gene043595	PPI
MS.gene98348	MS.gene043595	PPI
MS.gene51515	MS.gene043595	PPI
MS.gene043595	MS.gene62993	PPI
MS.gene043595	MS.gene041837	PPI
MS.gene073613	MS.gene043595	PPI
MS.gene041599	MS.gene043595	PPI
MS.gene043595	MS.gene035458	PPI
MS.gene75575	MS.gene043595	PPI
MS.gene043595	MS.gene77876	PPI
MS.gene002052	MS.gene043595	PPI
MS.gene049824	MS.gene043595	PPI
MS.gene043595	MS.gene58590	PPI
MS.gene043595	MS.gene91417	PPI
MS.gene77164	MS.gene043595	PPI
MS.gene045232	MS.gene043595	PPI
MS.gene39049	MS.gene043595	PPI
MS.gene035363	MS.gene043595	PPI
MS.gene043595	MS.gene99647	PPI
MS.gene043595	MS.gene50744	PPI
MS.gene043206	MS.gene043595	PPI
MS.gene026610	MS.gene043595	PPI
MS.gene043595	MS.gene96430	PPI
MS.gene043595	MS.gene072782	PPI
MS.gene043595	MS.gene027507	PPI
MS.gene043595	MS.gene81051	PPI
MS.gene043595	MS.gene91416	PPI
MS.gene99578	MS.gene043595	PPI
MS.gene043595	MS.gene052776	PPI
MS.gene043595	MS.gene87976	PPI
MS.gene043595	MS.gene62558	PPI
MS.gene08109	MS.gene043595	PPI
MS.gene043595	MS.gene018062	PPI
MS.gene043595	MS.gene78996	PPI
MS.gene043595	MS.gene59146	PPI
MS.gene043595	MS.gene060431	PPI
MS.gene026236	MS.gene043595	PPI
MS.gene029153	MS.gene043595	PPI
MS.gene043595	MS.gene30239	PPI
MS.gene62565	MS.gene043595	PPI
MS.gene067033	MS.gene043595	PPI
MS.gene043595	MS.gene064338	PPI
MS.gene043595	MS.gene27326	PPI
MS.gene043595	MS.gene83135	PPI
MS.gene043595	MS.gene45754	PPI
MS.gene071367	MS.gene043595	PPI
MS.gene039360	MS.gene043595	PPI
MS.gene004127	MS.gene043595	PPI
MS.gene013163	MS.gene043595	PPI
MS.gene043595	MS.gene057730	PPI
MS.gene49422	MS.gene043595	PPI
MS.gene043595	MS.gene045235	PPI
MS.gene06057	MS.gene043595	PPI
MS.gene043595	MS.gene041598	PPI
MS.gene043595	MS.gene049822	PPI
MS.gene003693	MS.gene043595	PPI
MS.gene043595	MS.gene41679	PPI
MS.gene88557	MS.gene043595	PPI
MS.gene043595	MS.gene017879	PPI
MS.gene93389	MS.gene043595	PPI
MS.gene066477	MS.gene043595	PPI
MS.gene80093	MS.gene043595	PPI
MS.gene043595	MS.gene00619	PPI
MS.gene043595	MS.gene027405	PPI
MS.gene061963	MS.gene043595	PPI
MS.gene043595	MS.gene42530	PPI
MS.gene043595	MS.gene051008	PPI
MS.gene043595	MS.gene23837	PPI
MS.gene26950	MS.gene043595	PPI
MS.gene00621	MS.gene043595	PPI
MS.gene043595	MS.gene45151	PPI
MS.gene043595	MS.gene000881	PPI
MS.gene045233	MS.gene043595	PPI
MS.gene49423	MS.gene043595	PPI
MS.gene000875	MS.gene043595	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043595.t1	MTR_3g053540	99.010	101	1	0	1	101	1	101	3.13e-72	209
MS.gene043595.t1	MTR_3g053520	99.010	101	1	0	1	101	1	101	6.60e-72	209
MS.gene043595.t1	MTR_8g010480	60.811	74	29	0	21	94	165	238	9.53e-28	102
MS.gene043595.t1	MTR_8g010480	61.972	71	27	0	23	93	244	314	1.64e-22	89.0
MS.gene043595.t1	MTR_8g010480	55.844	77	30	1	21	93	84	160	1.20e-21	86.7
MS.gene043595.t1	MTR_8g010480	44.828	87	45	2	15	100	2	86	2.62e-16	72.4
MS.gene043595.t1	MTR_8g010490	46.237	93	49	1	3	95	10	101	2.47e-26	96.3
MS.gene043595.t1	MTR_8g010490	52.632	76	36	0	23	98	108	183	8.14e-22	84.7
MS.gene043595.t1	MTR_8g085340	38.710	93	56	1	10	101	14	106	1.69e-18	74.7
MS.gene043595.t1	MTR_8g085320	33.333	99	65	1	1	98	1	99	5.82e-18	72.8
MS.gene043595.t1	MTR_3g053640	50.000	70	35	0	20	89	82	151	1.15e-15	71.2
MS.gene043595.t1	MTR_3g053640	51.562	64	31	0	29	92	15	78	2.70e-15	70.1
MS.gene043595.t1	MTR_0007s0030	66.667	39	13	0	48	86	1	39	5.92e-15	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene043595.t1	AT5G55160	91.489	94	5	2	5	98	2	92	1.34e-57	172
MS.gene043595.t1	AT4G26840	91.111	90	8	0	7	96	2	91	1.35e-57	172
MS.gene043595.t1	AT5G55160	80.374	107	5	3	5	98	2	105	4.91e-54	164
MS.gene043595.t1	AT5G55856	49.438	89	45	0	10	98	2	90	1.01e-26	94.7
MS.gene043595.t1	AT5G55170	50.562	89	42	1	12	98	5	93	2.52e-25	91.7
MS.gene043595.t1	AT5G55855	46.512	86	46	0	13	98	5	90	6.87e-24	87.4
MS.gene043595.t1	AT5G48710	46.591	88	46	1	12	98	17	104	6.53e-23	85.5
MS.gene043595.t1	AT5G48710	46.591	88	46	1	12	98	17	104	6.53e-23	85.5
MS.gene043595.t1	AT5G48710	46.591	88	46	1	12	98	17	104	6.53e-23	85.5
MS.gene043595.t1	AT5G55170	47.191	89	41	2	12	98	5	89	7.07e-21	80.1
MS.gene043595.t1	AT2G32765	43.421	76	43	0	23	98	28	103	7.67e-21	80.1
MS.gene043595.t1	AT5G48700	42.222	90	50	2	11	98	19	108	6.59e-18	72.8
MS.gene043595.t1	AT5G55170	47.887	71	35	1	12	80	5	75	2.17e-17	71.2
MS.gene043595.t1	AT5G48710	39.437	71	42	1	12	81	17	87	3.71e-14	62.8

Find 30 sgRNAs with CRISPR-Local

Find 158 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCTTGTCTTCCTCGGTGTT+GGG	0.209412	3.2:+45527474	None:intergenic
CTTCTTGTCTTCCTCGGTGT+TGG	0.353475	3.2:+45527473	None:intergenic
ATGGTAACGAAGTGTTCTTC+AGG	0.397067	3.2:-45525241	MS.gene043595:CDS
CTCTGGCTTCTTGTCTTCCT+CGG	0.403241	3.2:+45527467	None:intergenic
ATGTGAGCACCACCTGCCTC+TGG	0.431832	3.2:+45527450	None:intergenic
TTTCAGTTGGAGATGGAAGA+TGG	0.431884	3.2:-45524994	MS.gene043595:intron
TTCAGTTGGAGATGGAAGAT+GGG	0.463188	3.2:-45524993	MS.gene043595:intron
TCTTGTCTTCCTCGGTGTTG+GGG	0.468967	3.2:+45527475	None:intergenic
GAAGACAAGAAGCCAGAGGC+AGG	0.476752	3.2:-45527462	MS.gene043595:CDS
TCATATTCACGAACCTCATC+GGG	0.477321	3.2:+45525101	None:intergenic
GTCATATTCACGAACCTCAT+CGG	0.504722	3.2:+45525100	None:intergenic
GAGATTCTGAAGATGTCGTC+AGG	0.514599	3.2:-45527507	None:intergenic
CAACCTCAAGGTCAAGGGTC+AGG	0.516757	3.2:-45527427	MS.gene043595:intron
TGTCTTGTTTCAGTTGGAGA+TGG	0.524433	3.2:-45525001	MS.gene043595:intron
GACGCCATGCTTCATCAGAC+AGG	0.556706	3.2:-45524961	MS.gene043595:CDS
GAACCTGACCCTTGACCTTG+AGG	0.575367	3.2:+45527424	None:intergenic
CCCGTCAAAGAGAAAAGCAA+TGG	0.577412	3.2:+45525148	None:intergenic
CTTGTCTTCCTCGGTGTTGG+GGG	0.578362	3.2:+45527476	None:intergenic
ACCTCCTGTCTGATGAAGCA+TGG	0.580486	3.2:+45524957	None:intergenic
TCACATCAACCTCAAGGTCA+AGG	0.582181	3.2:-45527433	MS.gene043595:CDS
CACATCAACCTCAAGGTCAA+GGG	0.593562	3.2:-45527432	MS.gene043595:CDS
GACAAGAAGCCAGAGGCAGG+TGG	0.624082	3.2:-45527459	MS.gene043595:CDS
AAGTGTTCTTCAGGATCAAG+AGG	0.628651	3.2:-45525232	MS.gene043595:CDS
GCCATGCTTCATCAGACAGG+AGG	0.629302	3.2:-45524958	MS.gene043595:CDS
CATCGGGAGTCTGCTCAGCA+CGG	0.629541	3.2:+45525117	None:intergenic
CGAGGAAGACAAGAAGCCAG+AGG	0.636710	3.2:-45527466	MS.gene043595:CDS
TGGTGCTCACATCAACCTCA+AGG	0.636973	3.2:-45527439	MS.gene043595:CDS
TGCTGAGCAGACTCCCGATG+AGG	0.643397	3.2:-45525114	MS.gene043595:intron
TCAGTTGGAGATGGAAGATG+GGG	0.647712	3.2:-45524992	MS.gene043595:intron
TTACTGTGATCGTCAGTCTG+TGG	0.670146	3.2:-45525180	MS.gene043595:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAGTTTTATTTTTTTATTCA+TGG	-	chr3.2:45525241-45525260	MS.gene043595:CDS	10.0%
!!!	TTATTTTTAACTATGATTTT+TGG	-	chr3.2:45525299-45525318	MS.gene043595:intron	10.0%
!!!	TTTGAAATTTTCAATTTTTA+GGG	-	chr3.2:45525073-45525092	MS.gene043595:intron	10.0%
!!!	TTTTGAAATTTTCAATTTTT+AGG	-	chr3.2:45525072-45525091	MS.gene043595:intron	10.0%
!!	AAATAAATAATTAGAGATGT+GGG	+	chr3.2:45526184-45526203	None:intergenic	15.0%
!!	AAGCTACAATATAAAATTTA+AGG	+	chr3.2:45526319-45526338	None:intergenic	15.0%
!!!	CTATTTATCTTTTCATTATT+TGG	-	chr3.2:45525373-45525392	MS.gene043595:intron	15.0%
!!!	TTATTTTATACACAATAAGT+TGG	+	chr3.2:45525539-45525558	None:intergenic	15.0%
!!!	TTTGTTGTGTTTTATTTTTA+TGG	-	chr3.2:45525573-45525592	MS.gene043595:intron	15.0%
!!	AATAAATAATTAGAGATGTG+GGG	+	chr3.2:45526183-45526202	None:intergenic	20.0%
!!	GAAATAAATAATTAGAGATG+TGG	+	chr3.2:45526185-45526204	None:intergenic	20.0%
!!	TCCACAAAATTTAAATCAAA+CGG	+	chr3.2:45525102-45525121	None:intergenic	20.0%
!!!	AAATTTTATAGTGTCACTAT+TGG	-	chr3.2:45525988-45526007	MS.gene043595:intron	20.0%
!!!	TATGTAAGTGGTTATTTTTT+GGG	-	chr3.2:45525765-45525784	MS.gene043595:intron	20.0%
!!!	TCATTTTGACTGTAAAAAAA+AGG	+	chr3.2:45526781-45526800	None:intergenic	20.0%
!!!	TTATAACTTTGTATCTGTTT+TGG	-	chr3.2:45525959-45525978	MS.gene043595:intron	20.0%
!!!	TTGATTTAAATTTTGTGGAT+CGG	-	chr3.2:45525103-45525122	MS.gene043595:intron	20.0%
!!!	TTTAACTATGATTTTTGGTT+TGG	-	chr3.2:45525304-45525323	MS.gene043595:intron	20.0%
!	ACTTCAAAAAACTATGTAAG+TGG	-	chr3.2:45525753-45525772	MS.gene043595:intron	25.0%
!	AGATTATGAACACAGAAATA+AGG	+	chr3.2:45525353-45525372	None:intergenic	25.0%
!	GATTATGAACACAGAAATAA+GGG	+	chr3.2:45525352-45525371	None:intergenic	25.0%
!	TTGGAATTATATGCTAATCT+TGG	-	chr3.2:45527156-45527175	MS.gene043595:intron	25.0%
!!	TCTAAGATTATAGACATGAA+AGG	+	chr3.2:45525928-45525947	None:intergenic	25.0%
!!	TTTTCATTATTTGGTCTGTT+TGG	-	chr3.2:45525382-45525401	MS.gene043595:intron	25.0%
!!!	AAAGCTTTTAGTTCCAATTT+TGG	-	chr3.2:45525845-45525864	MS.gene043595:intron	25.0%
!!!	AAGCTTTTAGTTCCAATTTT+GGG	-	chr3.2:45525846-45525865	MS.gene043595:intron	25.0%
!!!	CATTGATTTGATTGTTTAGT+AGG	-	chr3.2:45525210-45525229	MS.gene043595:CDS	25.0%
!!!	CTATGTAAGTGGTTATTTTT+TGG	-	chr3.2:45525764-45525783	MS.gene043595:intron	25.0%
!!!	GATTTTTAACTTCTGTTACT+TGG	-	chr3.2:45525127-45525146	MS.gene043595:CDS	25.0%
!!!	TCCGTTTGATTTAAATTTTG+TGG	-	chr3.2:45525098-45525117	MS.gene043595:intron	25.0%
!!!	TTGTGACATTGTTTTAAGAA+AGG	+	chr3.2:45525644-45525663	None:intergenic	25.0%
	AAAACCCAGTTCACTTTAAA+AGG	+	chr3.2:45526363-45526382	None:intergenic	30.0%
	ACAGTCAAAATGAAGAAGAA+AGG	-	chr3.2:45526788-45526807	MS.gene043595:intron	30.0%
	CAATATCAATTGGAGAGAAT+GGG	-	chr3.2:45526111-45526130	MS.gene043595:intron	30.0%
	CAGTCAAAATGAAGAAGAAA+GGG	-	chr3.2:45526789-45526808	MS.gene043595:intron	30.0%
	CTCGATAATAACACTTTCAA+CGG	+	chr3.2:45526420-45526439	None:intergenic	30.0%
	GGATACATGAAACTAAACAT+TGG	-	chr3.2:45527137-45527156	MS.gene043595:intron	30.0%
	GTAAACTTATAGTGTCACAA+TGG	-	chr3.2:45525680-45525699	MS.gene043595:intron	30.0%
!	AGTTTTCATATCATCAGTCT+TGG	-	chr3.2:45526486-45526505	MS.gene043595:intron	30.0%
!	CAGTTGTGTTTCATCTTTTA+TGG	-	chr3.2:45526134-45526153	MS.gene043595:intron	30.0%
!	CATTGTTTGTTGAAGCTTTA+GGG	-	chr3.2:45525184-45525203	MS.gene043595:CDS	30.0%
!	GCTATGAATTGTTGTTCAAA+TGG	-	chr3.2:45525813-45525832	MS.gene043595:intron	30.0%
!	TCATTGTTTGTTGAAGCTTT+AGG	-	chr3.2:45525183-45525202	MS.gene043595:CDS	30.0%
!	TGGGATATATGTATTGCTTT+TGG	-	chr3.2:45525724-45525743	MS.gene043595:intron	30.0%
!	TGTTTTCATGCCATAAAACA+TGG	+	chr3.2:45527419-45527438	None:intergenic	30.0%
!	TTTAAGTTTGGCTTACAAAG+AGG	-	chr3.2:45526291-45526310	MS.gene043595:intron	30.0%
!!	AAAACATGTCTTGTTTCAGT+TGG	-	chr3.2:45527433-45527452	MS.gene043595:CDS	30.0%
!!	TTTTCTAAAGGGTTTTACTC+TGG	-	chr3.2:45526379-45526398	MS.gene043595:intron	30.0%
!!!	ATGCTAATCTTGGTTTGTTT+TGG	-	chr3.2:45527166-45527185	MS.gene043595:intron	30.0%
!!!	ATTGTTTTAAGAAAGGAGCT+TGG	+	chr3.2:45525637-45525656	None:intergenic	30.0%
!!!	TCTGCAATCTGTTTTAAGTT+TGG	-	chr3.2:45526279-45526298	MS.gene043595:intron	30.0%
!!!	TTTGCCTTTTAAAGTGAACT+GGG	-	chr3.2:45526356-45526375	MS.gene043595:intron	30.0%
	AAAACAGATTGCAGACATGA+AGG	+	chr3.2:45526274-45526293	None:intergenic	35.0%
	AAACAGATTGCAGACATGAA+GGG	+	chr3.2:45526273-45526292	None:intergenic	35.0%
	AACCAACATAGTTGTCAAAG+CGG	+	chr3.2:45527104-45527123	None:intergenic	35.0%
	ACTGTCGTAAATTGGATACA+TGG	-	chr3.2:45526511-45526530	MS.gene043595:intron	35.0%
	ATATTGCAAGGGAACACTTT+CGG	+	chr3.2:45526097-45526116	None:intergenic	35.0%
	ATGACGTTTAATTAGAGAGC+AGG	-	chr3.2:45526030-45526049	MS.gene043595:intron	35.0%
	CTCTCCAATTGATATTGCAA+GGG	+	chr3.2:45526108-45526127	None:intergenic	35.0%
	GATTAGAGATCTAGAGATCT+AGG	-	chr3.2:45526827-45526846	MS.gene043595:intron	35.0%
	GCAATATCAATTGGAGAGAA+TGG	-	chr3.2:45526110-45526129	MS.gene043595:intron	35.0%
	GTTTCCATATAGCCCAAAAT+TGG	+	chr3.2:45525861-45525880	None:intergenic	35.0%
	GTTTCTTCCTTCGATTTCTA+GGG	-	chr3.2:45525043-45525062	MS.gene043595:intron	35.0%
	TCTCTCCAATTGATATTGCA+AGG	+	chr3.2:45526109-45526128	None:intergenic	35.0%
	TCTTGGTTACTGTCGTAAAT+TGG	-	chr3.2:45526503-45526522	MS.gene043595:intron	35.0%
	TGACGTTTAATTAGAGAGCA+GGG	-	chr3.2:45526031-45526050	MS.gene043595:intron	35.0%
	TGTTCCCTTGCAATATCAAT+TGG	-	chr3.2:45526101-45526120	MS.gene043595:intron	35.0%
	TGTTTCTTCCTTCGATTTCT+AGG	-	chr3.2:45525042-45525061	MS.gene043595:intron	35.0%
!	AAGTGAACTGGGTTTTCTAA+AGG	-	chr3.2:45526367-45526386	MS.gene043595:intron	35.0%
!	AGAACAGAGATGAGATTTTG+TGG	+	chr3.2:45526747-45526766	None:intergenic	35.0%
!	AGTGAACTGGGTTTTCTAAA+GGG	-	chr3.2:45526368-45526387	MS.gene043595:intron	35.0%
!	AGTTCCAATTTTGGGCTATA+TGG	-	chr3.2:45525854-45525873	MS.gene043595:intron	35.0%
!	GAACGTATGAAACCAACTTT+TGG	-	chr3.2:45525459-45525478	MS.gene043595:intron	35.0%
!	TATGAAACCAACTTTTGGCA+TGG	-	chr3.2:45525464-45525483	MS.gene043595:intron	35.0%
!	TGTTGGTTACTGTCGTAAAT+TGG	-	chr3.2:45527116-45527135	MS.gene043595:intron	35.0%
!!	TCCATTGCTTTTCTCTTTGA+CGG	-	chr3.2:45527291-45527310	MS.gene043595:intron	35.0%
!!	TTTTACTCTGGTGTTGGAAT+TGG	-	chr3.2:45526391-45526410	MS.gene043595:intron	35.0%
!!!	GTTTGCCTTTTAAAGTGAAC+TGG	-	chr3.2:45526355-45526374	MS.gene043595:intron	35.0%
!!!	TGGTTTGTTTTGGATGTTGT+AGG	-	chr3.2:45527176-45527195	MS.gene043595:intron	35.0%
!!!	TTGTTTTGGATGTTGTAGGA+TGG	-	chr3.2:45527180-45527199	MS.gene043595:intron	35.0%
	AACGAAACCCTAGAAATCGA+AGG	+	chr3.2:45525053-45525072	None:intergenic	40.0%
	AAGTGTTCTTCAGGATCAAG+AGG	-	chr3.2:45527208-45527227	MS.gene043595:intron	40.0%
	ACTGGCTAACATAGTTGAGT+TGG	-	chr3.2:45525704-45525723	MS.gene043595:intron	40.0%
	CTGGCTAACATAGTTGAGTT+GGG	-	chr3.2:45525705-45525724	MS.gene043595:intron	40.0%
	GTCATATTCACGAACCTCAT+CGG	+	chr3.2:45527343-45527362	None:intergenic	40.0%
	GTTACCTCTGTTGTCAATAG+CGG	-	chr3.2:45526545-45526564	MS.gene043595:intron	40.0%
	TAAGCACTTGTTCCATCGTT+TGG	-	chr3.2:45525434-45525453	MS.gene043595:intron	40.0%
	TCATACGTTCTTCCAAACGA+TGG	+	chr3.2:45525449-45525468	None:intergenic	40.0%
	TCATATTCACGAACCTCATC+GGG	+	chr3.2:45527342-45527361	None:intergenic	40.0%
	TGAAGACGATCTAGAGATCT+AGG	-	chr3.2:45526867-45526886	MS.gene043595:intron	40.0%
	TGCCATAAAACATGGATGTC+AGG	+	chr3.2:45527411-45527430	None:intergenic	40.0%
	TTATAGTGTCACAATGGCAC+TGG	-	chr3.2:45525686-45525705	MS.gene043595:intron	40.0%
	TTCAGTTGGAGATGGAAGAT+GGG	-	chr3.2:45527447-45527466	MS.gene043595:CDS	40.0%
	TTCCGCTTTGACAACTATGT+TGG	-	chr3.2:45527099-45527118	MS.gene043595:intron	40.0%
	TTTCAGTTGGAGATGGAAGA+TGG	-	chr3.2:45527446-45527465	MS.gene043595:CDS	40.0%
!	AAAGGGTTTTACTCTGGTGT+TGG	-	chr3.2:45526385-45526404	MS.gene043595:intron	40.0%
!	ATGGTAACGAAGTGTTCTTC+AGG	-	chr3.2:45527199-45527218	MS.gene043595:intron	40.0%
!	TGCCTGACATCCATGTTTTA+TGG	-	chr3.2:45527406-45527425	MS.gene043595:intron	40.0%
!	TGGATACATGGAACTAGTCT+TGG	-	chr3.2:45526523-45526542	MS.gene043595:intron	40.0%
!!	CCATTGCTTTTCTCTTTGAC+GGG	-	chr3.2:45527292-45527311	MS.gene043595:intron	40.0%
!!	TGTCTTGTTTCAGTTGGAGA+TGG	-	chr3.2:45527439-45527458	MS.gene043595:CDS	40.0%
	AGAGCAGGGATAGTGTGTAT+CGG	-	chr3.2:45526045-45526064	MS.gene043595:intron	45.0%
	AGGCAAAAGCGGAACAAAAG+CGG	-	chr3.2:45526633-45526652	MS.gene043595:intron	45.0%
	CACATCAACCTCAAGGTCAA+GGG	-	chr3.2:45525008-45525027	MS.gene043595:intron	45.0%
	CCCGTCAAAGAGAAAAGCAA+TGG	+	chr3.2:45527295-45527314	None:intergenic	45.0%
	CCTATGACCATGCCAAAAGT+TGG	+	chr3.2:45525474-45525493	None:intergenic	45.0%
	TAGACCGCTATTGACAACAG+AGG	+	chr3.2:45526552-45526571	None:intergenic	45.0%
	TAGTTGTCAAAGCGGAAACG+CGG	+	chr3.2:45527096-45527115	None:intergenic	45.0%
	TCACATCAACCTCAAGGTCA+AGG	-	chr3.2:45525007-45525026	MS.gene043595:intron	45.0%
	TCAGTTGGAGATGGAAGATG+GGG	-	chr3.2:45527448-45527467	MS.gene043595:CDS	45.0%
	TTACTGTGATCGTCAGTCTG+TGG	-	chr3.2:45527260-45527279	MS.gene043595:intron	45.0%
	TTGTCAATAGCGGTCTAACG+CGG	-	chr3.2:45526555-45526574	MS.gene043595:intron	45.0%
!	CCAACTTTTGGCATGGTCAT+AGG	-	chr3.2:45525471-45525490	MS.gene043595:intron	45.0%
!	TACTCTGGTGTTGGAATTGG+AGG	-	chr3.2:45526394-45526413	MS.gene043595:intron	45.0%
!!	TTCTTGTCTTCCTCGGTGTT+GGG	+	chr3.2:45524969-45524988	None:intergenic	45.0%
!!	AATTATTATCAAAATATATT+TGG	+	chr3.2:45527387-45527406	None:intergenic	5.0%
	ACCTCCTGTCTGATGAAGCA+TGG	+	chr3.2:45527486-45527505	None:intergenic	50.0%
	GGCAAAAGCGGAACAAAAGC+GGG	-	chr3.2:45526634-45526653	MS.gene043595:intron	50.0%
	TGGTGCTCACATCAACCTCA+AGG	-	chr3.2:45525001-45525020	MS.gene043595:intron	50.0%
!	CTCTGGCTTCTTGTCTTCCT+CGG	+	chr3.2:45524976-45524995	None:intergenic	50.0%
!	CTTCTTGTCTTCCTCGGTGT+TGG	+	chr3.2:45524970-45524989	None:intergenic	50.0%
!!	TCTTGTCTTCCTCGGTGTTG+GGG	+	chr3.2:45524968-45524987	None:intergenic	50.0%
	AGTCGCGCGTTAGGCAAAAG+CGG	-	chr3.2:45526622-45526641	MS.gene043595:intron	55.0%
	CAACCTCAAGGTCAAGGGTC+AGG	-	chr3.2:45525013-45525032	MS.gene043595:intron	55.0%
	CGAGGAAGACAAGAAGCCAG+AGG	-	chr3.2:45524974-45524993	MS.gene043595:CDS	55.0%
	GAACAAAAGCGGGTCAACGC+GGG	-	chr3.2:45526644-45526663	MS.gene043595:intron	55.0%
	GAACCTGACCCTTGACCTTG+AGG	+	chr3.2:45525019-45525038	None:intergenic	55.0%
	GAAGACAAGAAGCCAGAGGC+AGG	-	chr3.2:45524978-45524997	MS.gene043595:CDS	55.0%
	GACGCCATGCTTCATCAGAC+AGG	-	chr3.2:45527479-45527498	MS.gene043595:CDS	55.0%
	GCCATGCTTCATCAGACAGG+AGG	-	chr3.2:45527482-45527501	MS.gene043595:CDS	55.0%
	GGAACAAAAGCGGGTCAACG+CGG	-	chr3.2:45526643-45526662	MS.gene043595:intron	55.0%
	GGCCACCCCAAAAATTGACG+CGG	+	chr3.2:45527065-45527084	None:intergenic	55.0%
!	ACCGCGCCGCGTCAATTTTT+GGG	-	chr3.2:45527056-45527075	MS.gene043595:intron	55.0%
!	CTTTTGCCTAACGCGCGACT+CGG	+	chr3.2:45526622-45526641	None:intergenic	55.0%
!	TACCGCGCCGCGTCAATTTT+TGG	-	chr3.2:45527055-45527074	MS.gene043595:intron	55.0%
!!	CTTGTCTTCCTCGGTGTTGG+GGG	+	chr3.2:45524967-45524986	None:intergenic	55.0%
	AATTGACGCGGCGCGGTAAG+CGG	+	chr3.2:45527053-45527072	None:intergenic	60.0%
	ATGTGAGCACCACCTGCCTC+TGG	+	chr3.2:45524993-45525012	None:intergenic	60.0%
	CATCGGGAGTCTGCTCAGCA+CGG	+	chr3.2:45527326-45527345	None:intergenic	60.0%
	CCCCAAAAATTGACGCGGCG+CGG	+	chr3.2:45527060-45527079	None:intergenic	60.0%
	GACAAGAAGCCAGAGGCAGG+TGG	-	chr3.2:45524981-45525000	MS.gene043595:CDS	60.0%
	GGCAAAAAGCGGGTCAACGC+GGG	-	chr3.2:45526665-45526684	MS.gene043595:intron	60.0%
	GGGCAAAAAGCGGGTCAACG+CGG	-	chr3.2:45526664-45526683	MS.gene043595:intron	60.0%
	GGGTCAACGCGGGCAAAAAG+CGG	-	chr3.2:45526654-45526673	MS.gene043595:intron	60.0%
	GGTCAACGCGGGCAAAAAGC+GGG	-	chr3.2:45526655-45526674	MS.gene043595:intron	60.0%
	TGCTGAGCAGACTCCCGATG+AGG	-	chr3.2:45527326-45527345	MS.gene043595:intron	60.0%
!	CCGCGCCGCGTCAATTTTTG+GGG	-	chr3.2:45527057-45527076	MS.gene043595:intron	60.0%
!	GCGGGCGCTTTTACATGACG+CGG	+	chr3.2:45527023-45527042	None:intergenic	60.0%
!!	CGCCGCGTCAATTTTTGGGG+TGG	-	chr3.2:45527060-45527079	MS.gene043595:intron	60.0%
	ACGCTACCGAGTCGCGCGTT+AGG	-	chr3.2:45526613-45526632	MS.gene043595:intron	65.0%
	ATTGACGCGGCGCGGTAAGC+GGG	+	chr3.2:45527052-45527071	None:intergenic	65.0%
	CGGTAGCGTTCTGACGCGCT+AGG	+	chr3.2:45526602-45526621	None:intergenic	65.0%
	GTCAAAGCGGAAACGCGGCG+CGG	+	chr3.2:45527091-45527110	None:intergenic	65.0%
	GGTCTAACGCGGCGCGATCG+CGG	-	chr3.2:45526566-45526585	MS.gene043595:intron	70.0%
	TGCAGCTGCCCCCAACACCG+AGG	-	chr3.2:45524956-45524975	MS.gene043595:CDS	70.0%
!	AGCGGAAACGCGGCGCGGCG+CGG	+	chr3.2:45527086-45527105	None:intergenic	80.0%
!	CGCGGTAAGCGGGCGCGACG+CGG	+	chr3.2:45527042-45527061	None:intergenic	80.0%
!	GCGGTAAGCGGGCGCGACGC+GGG	+	chr3.2:45527041-45527060	None:intergenic	80.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	45524945	45527517	45524945	ID=MS.gene043595
chr3.2	mRNA	45524945	45527517	45524945	ID=MS.gene043595.t1;Parent=MS.gene043595
chr3.2	exon	45527428	45527517	45527428	ID=MS.gene043595.t1.exon1;Parent=MS.gene043595.t1
chr3.2	CDS	45527428	45527517	45527428	ID=cds.MS.gene043595.t1;Parent=MS.gene043595.t1
chr3.2	exon	45525115	45525264	45525115	ID=MS.gene043595.t1.exon2;Parent=MS.gene043595.t1
chr3.2	CDS	45525115	45525264	45525115	ID=cds.MS.gene043595.t1;Parent=MS.gene043595.t1
chr3.2	exon	45524945	45525010	45524945	ID=MS.gene043595.t1.exon3;Parent=MS.gene043595.t1
chr3.2	CDS	45524945	45525010	45524945	ID=cds.MS.gene043595.t1;Parent=MS.gene043595.t1

Gene Sequence

>MS.gene043595

ATGTCGTCAGGTGCAGCTGCCCCCAACACCGAGGAAGACAAGAAGCCAGAGGCAGGTGGTGCTCACATCAACCTCAAGGTCAAGGGTCAGGTTCGTTTGTTTCTTCCTTCGATTTCTAGGGTTTCGTTTTTGAAATTTTCAATTTTTAGGGTTTCCGTTTGATTTAAATTTTGTGGATCGGTGATTTTTAACTTCTGTTACTTGGCTTATGATATATAAATTTCGTTTGTGTTGTTTATCATTGTTTGTTGAAGCTTTAGGGTTTCATTGATTTGATTGTTTAGTAGGTTTGATTAAAGTTTTATTTTTTTATTCATGGATCGAGTTTTTTTCTTAATAAATTTAATTTTGATATTATTTTTAACTATGATTTTTGGTTTGGAATTTAATTTCATTGTTCTGAACCCTTATTTCTGTGTTCATAATCTCTATTTATCTTTTCATTATTTGGTCTGTTTGGATTGACTTATTTGAGTTTATATACTGCTATAAGCACTTGTTCCATCGTTTGGAAGAACGTATGAAACCAACTTTTGGCATGGTCATAGGTGTTTTCAACTTTTTTCTTTAAGATCAAACAAGTCTATGAAACCAACTTATTGTGTATAAAATAACAGTTTGACTTTATTTTGTTGTGTTTTATTTTTATGGAAGTAGCTTGTTCATAAGTGCTTATATAAGTTGTTTTACCAAGCTCCTTTCTTAAAACAATGTCACAAGTGCTTATAGTAGTATGTAAACTTATAGTGTCACAATGGCACTGGCTAACATAGTTGAGTTGGGATATATGTATTGCTTTTGGTAAGAAACTTCAAAAAACTATGTAAGTGGTTATTTTTTGGGTTTCTGTTTTGATTAAACTTCATATGCTATGAATTGTTGTTCAAATGGATGATAGTTAAAGCTTTTAGTTCCAATTTTGGGCTATATGGAAACATTTGATATCTTTTCACGTTTGCACGTTTCATTGTTTGTTGCATCCTTTCATGTCTATAATCTTAGATCTTGCTTGTTTTATAACTTTGTATCTGTTTTGGTTATCTAAATTTTATAGTGTCACTATTGGTTTCTTCAGATAAAAATAGATGACGTTTAATTAGAGAGCAGGGATAGTGTGTATCGGTGTTGTGCTATGATCAATGCATTCTTCCGAAAGTGTTCCCTTGCAATATCAATTGGAGAGAATGGGCAGTTGTGTTTCATCTTTTATGGTTGAAAATCACAACAATCATTTTCCCCACATCTCTAATTATTTATTTCTAAAAAAGTAATGCATGAATGTGTTTTTTTTTTTCAATGTCAGAATGTTTCACTGTTTTGTGCATCCCTTCATGTCTGCAATCTGTTTTAAGTTTGGCTTACAAAGAGGTTCCTTAAATTTTATATTGTAGCTTTTTTTTTGTTTCTATAGTTTGCCTTTTAAAGTGAACTGGGTTTTCTAAAGGGTTTTACTCTGGTGTTGGAATTGGAGGCCGTTGAAAGTGTTATTATCGAGATAAATATCAAAAACATAAGTTACACTTTAAATTCTTGATATGAGTAGTTTTCATATCATCAGTCTTGGTTACTGTCGTAAATTGGATACATGGAACTAGTCTTGGTTACCTCTGTTGTCAATAGCGGTCTAACGCGGCGCGATCGCGGCTGAAAACAGCCTAGCGCGTCAGAACGCTACCGAGTCGCGCGTTAGGCAAAAGCGGAACAAAAGCGGGTCAACGCGGGCAAAAAGCGGGTCAACGCGGGCAAAAAGCGGGTCAACGCGGGCAAAAAGCGGGTCAACAAAAAAATCTCATCAGAAACCACAAAATCTCATCTCTGTTCTCTGTTAATCATCCTTTTTTTTACAGTCAAAATGAAGAAGAAAGGGAAGAAGTGAAAGATTGATTAGAGATCTAGAGATCTAGGAATTAATATGATCAAGATGAAGACGATCTAGAGATCTAGGAATTAATATGATCAAGATGAAGTCTAAATGTGAATGCAAAATAAAATTTTCTCATCTATATTAATACTAAATATATTTTTTTCATACTTTTTTAGTACTTAATTAATAATATAATATTTAGTTTTAGTGTCCGCGTCATGTAAAAGCGCCCGCGTCGCGCCCGCTTACCGCGCCGCGTCAATTTTTGGGGTGGCCGCGCCGCGCCGCGTTTCCGCTTTGACAACTATGTTGGTTACTGTCGTAAATTGGATACATGAAACTAAACATTGGAATTATATGCTAATCTTGGTTTGTTTTGGATGTTGTAGGATGGTAACGAAGTGTTCTTCAGGATCAAGAGGAACACTCAATTGAAAAAGCTTATGAATGCTTACTGTGATCGTCAGTCTGTGGATTTCAACTCCATTGCTTTTCTCTTTGACGGGCGTCGTCTCCGTGCTGAGCAGACTCCCGATGAGGTTCGTGAATATGACATCTTCACTACTTTATCTCTACCAAATATATTTTGATAATAATTGCCTGACATCCATGTTTTATGGCATGAAAACATGTCTTGTTTCAGTTGGAGATGGAAGATGGGGATGAAATTGACGCCATGCTTCATCAGACAGGAGGTTCTGTTGTCTGA

Protein sequence

>MS.gene043595.t1

MSSGAAAPNTEEDKKPEAGGAHINLKVKGQDGNEVFFRIKRNTQLKKLMNAYCDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSVV