Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035828.t1 | XP_013459866.1 | 99 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 8.70E-49 | 202.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035828.t1 | P55852 | 93.4 | 91 | 6 | 0 | 9 | 99 | 4 | 94 | 8.0e-43 | 174.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035828.t1 | I3SU86 | 99.0 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 6.2e-49 | 202.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035828.t1 | MTR_3g053540 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 3.13e-72 | 209 |
| MS.gene035828.t1 | MTR_3g053520 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 6.60e-72 | 209 |
| MS.gene035828.t1 | MTR_8g010480 | 60.811 | 74 | 29 | 0 | 21 | 94 | 165 | 238 | 9.53e-28 | 102 |
| MS.gene035828.t1 | MTR_8g010480 | 61.972 | 71 | 27 | 0 | 23 | 93 | 244 | 314 | 1.64e-22 | 89.0 |
| MS.gene035828.t1 | MTR_8g010480 | 55.844 | 77 | 30 | 1 | 21 | 93 | 84 | 160 | 1.20e-21 | 86.7 |
| MS.gene035828.t1 | MTR_8g010480 | 44.828 | 87 | 45 | 2 | 15 | 100 | 2 | 86 | 2.62e-16 | 72.4 |
| MS.gene035828.t1 | MTR_8g010490 | 46.237 | 93 | 49 | 1 | 3 | 95 | 10 | 101 | 2.47e-26 | 96.3 |
| MS.gene035828.t1 | MTR_8g010490 | 52.632 | 76 | 36 | 0 | 23 | 98 | 108 | 183 | 8.14e-22 | 84.7 |
| MS.gene035828.t1 | MTR_8g085340 | 38.710 | 93 | 56 | 1 | 10 | 101 | 14 | 106 | 1.69e-18 | 74.7 |
| MS.gene035828.t1 | MTR_8g085320 | 33.333 | 99 | 65 | 1 | 1 | 98 | 1 | 99 | 5.82e-18 | 72.8 |
| MS.gene035828.t1 | MTR_3g053640 | 50.000 | 70 | 35 | 0 | 20 | 89 | 82 | 151 | 1.15e-15 | 71.2 |
| MS.gene035828.t1 | MTR_3g053640 | 51.562 | 64 | 31 | 0 | 29 | 92 | 15 | 78 | 2.70e-15 | 70.1 |
| MS.gene035828.t1 | MTR_0007s0030 | 66.667 | 39 | 13 | 0 | 48 | 86 | 1 | 39 | 5.92e-15 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035828.t1 | AT5G55160 | 91.489 | 94 | 5 | 2 | 5 | 98 | 2 | 92 | 1.34e-57 | 172 |
| MS.gene035828.t1 | AT4G26840 | 91.111 | 90 | 8 | 0 | 7 | 96 | 2 | 91 | 1.35e-57 | 172 |
| MS.gene035828.t1 | AT5G55160 | 80.374 | 107 | 5 | 3 | 5 | 98 | 2 | 105 | 4.91e-54 | 164 |
| MS.gene035828.t1 | AT5G55856 | 49.438 | 89 | 45 | 0 | 10 | 98 | 2 | 90 | 1.01e-26 | 94.7 |
| MS.gene035828.t1 | AT5G55170 | 50.562 | 89 | 42 | 1 | 12 | 98 | 5 | 93 | 2.52e-25 | 91.7 |
| MS.gene035828.t1 | AT5G55855 | 46.512 | 86 | 46 | 0 | 13 | 98 | 5 | 90 | 6.87e-24 | 87.4 |
| MS.gene035828.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 6.53e-23 | 85.5 |
| MS.gene035828.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 6.53e-23 | 85.5 |
| MS.gene035828.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 6.53e-23 | 85.5 |
| MS.gene035828.t1 | AT5G55170 | 47.191 | 89 | 41 | 2 | 12 | 98 | 5 | 89 | 7.07e-21 | 80.1 |
| MS.gene035828.t1 | AT2G32765 | 43.421 | 76 | 43 | 0 | 23 | 98 | 28 | 103 | 7.67e-21 | 80.1 |
| MS.gene035828.t1 | AT5G48700 | 42.222 | 90 | 50 | 2 | 11 | 98 | 19 | 108 | 6.59e-18 | 72.8 |
| MS.gene035828.t1 | AT5G55170 | 47.887 | 71 | 35 | 1 | 12 | 80 | 5 | 75 | 2.17e-17 | 71.2 |
| MS.gene035828.t1 | AT5G48710 | 39.437 | 71 | 42 | 1 | 12 | 81 | 17 | 87 | 3.71e-14 | 62.8 |
Find 25 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTGAGCACCACCAGCTTC+TGG | 0.265597 | 3.4:+50379708 | None:intergenic |
| TTCTTGTCTTCCTCAGTGTT+GGG | 0.315048 | 3.4:+50379732 | None:intergenic |
| CTTCTTGTCTTCCTCAGTGT+TGG | 0.344681 | 3.4:+50379731 | None:intergenic |
| TTTCAGTTGGAGATGGAAGA+TGG | 0.431884 | 3.4:-50377671 | MS.gene035828:intron |
| TTCAGTTGGAGATGGAAGAT+GGG | 0.463188 | 3.4:-50377670 | MS.gene035828:intron |
| TCATATTCACGAACCTCATC+GGG | 0.477321 | 3.4:+50377780 | None:intergenic |
| GTCATATTCACGAACCTCAT+CGG | 0.504722 | 3.4:+50377779 | None:intergenic |
| GAGATTCTGAAGATGTCGTC+AGG | 0.514599 | 3.4:-50379765 | None:intergenic |
| CAACCTCAAGGTCAAGGGTC+AGG | 0.516757 | 3.4:-50379685 | MS.gene035828:intron |
| GAAGACAAGAAGCCAGAAGC+TGG | 0.521656 | 3.4:-50379720 | MS.gene035828:CDS |
| TGTCTTGTTTCAGTTGGAGA+TGG | 0.529171 | 3.4:-50377678 | MS.gene035828:intron |
| GATGCCATGCTTCATCAGAC+AGG | 0.571646 | 3.4:-50377638 | MS.gene035828:CDS |
| GAACCTGACCCTTGACCTTG+AGG | 0.575367 | 3.4:+50379682 | None:intergenic |
| CCCATCAAAGAGAAAAGCGA+TGG | 0.577412 | 3.4:+50377827 | None:intergenic |
| ACCTCCTGTCTGATGAAGCA+TGG | 0.580486 | 3.4:+50377634 | None:intergenic |
| TCACATCAACCTCAAGGTCA+AGG | 0.582181 | 3.4:-50379691 | MS.gene035828:CDS |
| CACATCAACCTCAAGGTCAA+GGG | 0.593562 | 3.4:-50379690 | MS.gene035828:CDS |
| GCCATGCTTCATCAGACAGG+AGG | 0.612346 | 3.4:-50377635 | MS.gene035828:CDS |
| TGGTGCTCACATCAACCTCA+AGG | 0.628444 | 3.4:-50379697 | MS.gene035828:CDS |
| CATCGGGAGTCTGCTCAGCA+CGG | 0.629541 | 3.4:+50377796 | None:intergenic |
| TGCTGAGCAGACTCCCGATG+AGG | 0.643397 | 3.4:-50377793 | MS.gene035828:intron |
| TCAGTTGGAGATGGAAGATG+GGG | 0.647712 | 3.4:-50377669 | MS.gene035828:intron |
| TTACTGTGATCGTCAGTCTG+TGG | 0.670146 | 3.4:-50377859 | MS.gene035828:CDS |
| GACAAGAAGCCAGAAGCTGG+TGG | 0.675369 | 3.4:-50379717 | MS.gene035828:CDS |
| TGCAGCTGCTCCCAACACTG+AGG | 0.716752 | 3.4:-50379742 | MS.gene035828:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTAAAGTTTTTTTTTTT+TGG | - | chr3.4:50377920-50377939 | MS.gene035828:CDS | 10.0% |
| !!! | TTTGAAATTTTCAATTTTTA+GGG | - | chr3.4:50377750-50377769 | MS.gene035828:intron | 10.0% |
| !!! | TTTTGAAATTTTCAATTTTT+AGG | - | chr3.4:50377749-50377768 | MS.gene035828:intron | 10.0% |
| !! | AAGCTACAATATAAAATTTA+AGG | + | chr3.4:50379107-50379126 | None:intergenic | 15.0% |
| !! | AGATATATAATTGATCTAAA+AGG | + | chr3.4:50379157-50379176 | None:intergenic | 15.0% |
| !! | TATAGAGTATAAAATGAATT+TGG | - | chr3.4:50378190-50378209 | MS.gene035828:intron | 15.0% |
| !! | TATATATCTATACTCAAAAT+TGG | - | chr3.4:50379168-50379187 | MS.gene035828:intron | 15.0% |
| !!! | ATATTTTTTTACTATGCTTT+AGG | - | chr3.4:50377985-50378004 | MS.gene035828:intron | 15.0% |
| !! | AAAAAATAATTAGAGATGTG+GGG | + | chr3.4:50378974-50378993 | None:intergenic | 20.0% |
| !! | AATAAATCAAGTGTGAAAAA+AGG | - | chr3.4:50378391-50378410 | MS.gene035828:intron | 20.0% |
| !! | AGAAAAAATAATTAGAGATG+TGG | + | chr3.4:50378976-50378995 | None:intergenic | 20.0% |
| !! | GAAAAAATAATTAGAGATGT+GGG | + | chr3.4:50378975-50378994 | None:intergenic | 20.0% |
| !!! | AATGTGTTTCTTTTTAATGT+CGG | - | chr3.4:50379014-50379033 | MS.gene035828:intron | 20.0% |
| !!! | GTTTTTTTTTTTTGGATTCA+TGG | - | chr3.4:50377928-50377947 | MS.gene035828:intron | 20.0% |
| !!! | TATCTTTTCATGTTTTCATT+AGG | - | chr3.4:50378643-50378662 | MS.gene035828:intron | 20.0% |
| !!! | TCATTTTATACTCTATAAGT+TGG | + | chr3.4:50378187-50378206 | None:intergenic | 20.0% |
| !!! | TCTTTTTTAATAATGTATGC+TGG | - | chr3.4:50378428-50378447 | MS.gene035828:intron | 20.0% |
| !!! | TGGTTATCTAAATTTTATAG+TGG | - | chr3.4:50378770-50378789 | MS.gene035828:intron | 20.0% |
| !!! | TTATATCTTTGTATCTGTTT+TGG | - | chr3.4:50378750-50378769 | MS.gene035828:intron | 20.0% |
| !!! | TTTTTGTTTCTATTGTTTGA+TGG | - | chr3.4:50379127-50379146 | MS.gene035828:intron | 20.0% |
| ! | ACTTCAAAAAACTATGTTAG+TGG | - | chr3.4:50378509-50378528 | MS.gene035828:intron | 25.0% |
| ! | AGATTATGAACACACAAATA+AGG | + | chr3.4:50378040-50378059 | None:intergenic | 25.0% |
| ! | ATAGAAATTAATTCCCTCTT+TGG | + | chr3.4:50378296-50378315 | None:intergenic | 25.0% |
| ! | GATTATGAACACACAAATAA+GGG | + | chr3.4:50378039-50378058 | None:intergenic | 25.0% |
| ! | TCCACAAAGTTTAAATCAAA+CGG | + | chr3.4:50377779-50377798 | None:intergenic | 25.0% |
| ! | TTGATTTAAACTTTGTGGAT+CGG | - | chr3.4:50377780-50377799 | MS.gene035828:intron | 25.0% |
| ! | TTGGAATTATATGCTAATCT+TGG | - | chr3.4:50379412-50379431 | MS.gene035828:intron | 25.0% |
| !! | AAATTTTATAGTGGCACTAT+TGG | - | chr3.4:50378779-50378798 | MS.gene035828:intron | 25.0% |
| !! | AATAAGATCTTTTACCAAAG+AGG | - | chr3.4:50378279-50378298 | MS.gene035828:intron | 25.0% |
| !! | ATAAGATCTTTTACCAAAGA+GGG | - | chr3.4:50378280-50378299 | MS.gene035828:intron | 25.0% |
| !! | GTTTTCATTAGGATATCTTT+TGG | - | chr3.4:50378654-50378673 | MS.gene035828:intron | 25.0% |
| !! | TATTGTTTGTTGAAGCATTA+GGG | - | chr3.4:50377863-50377882 | MS.gene035828:CDS | 25.0% |
| !! | TATTTTCATGCCATAAAACA+TGG | + | chr3.4:50379677-50379696 | None:intergenic | 25.0% |
| !! | TTATTGTTTGTTGAAGCATT+AGG | - | chr3.4:50377862-50377881 | MS.gene035828:CDS | 25.0% |
| !!! | AAAATATGTCTTGTTTCAGT+TGG | - | chr3.4:50379691-50379710 | MS.gene035828:CDS | 25.0% |
| !!! | CTATGTTAGTGGTTATTTTT+TGG | - | chr3.4:50378520-50378539 | MS.gene035828:intron | 25.0% |
| !!! | TTTTACTATGCTTTAGGATT+TGG | - | chr3.4:50377991-50378010 | MS.gene035828:intron | 25.0% |
| !!! | TTTTCTAAAGAGTTTTACTC+TGG | - | chr3.4:50379211-50379230 | MS.gene035828:intron | 25.0% |
| AAAAGTGGAACCAAAAGATT+TGG | + | chr3.4:50378601-50378620 | None:intergenic | 30.0% | |
| AAATCAAGTGTGAAAAAAGG+AGG | - | chr3.4:50378394-50378413 | MS.gene035828:intron | 30.0% | |
| ACTGTTGTAAATTGGTTACA+TGG | - | chr3.4:50379343-50379362 | MS.gene035828:intron | 30.0% | |
| CAATATCAATTGGAGAGAAT+GGG | - | chr3.4:50378902-50378921 | MS.gene035828:intron | 30.0% | |
| CTCGATAATAACACTTTCAA+TGG | + | chr3.4:50379252-50379271 | None:intergenic | 30.0% | |
| GGATACATGAAACTAAACAT+TGG | - | chr3.4:50379393-50379412 | MS.gene035828:intron | 30.0% | |
| TCTTGGTTACTGTTGTAAAT+TGG | - | chr3.4:50379335-50379354 | MS.gene035828:intron | 30.0% | |
| TGATGTTTAATTAGAGAGCA+GGG | - | chr3.4:50378822-50378841 | MS.gene035828:intron | 30.0% | |
| TGGTTTCTTCAGAAAAACAT+AGG | - | chr3.4:50378799-50378818 | MS.gene035828:intron | 30.0% | |
| ! | AGTTTTCATATCATCAGTCT+TGG | - | chr3.4:50379318-50379337 | MS.gene035828:intron | 30.0% |
| ! | CAGTTGTGTTTCATCTTTTA+TGG | - | chr3.4:50378925-50378944 | MS.gene035828:intron | 30.0% |
| ! | GTTTCTTGTTTCGATTTCTA+GGG | - | chr3.4:50377720-50377739 | MS.gene035828:intron | 30.0% |
| ! | TATAAGTTTGGCTTACAAAG+AGG | - | chr3.4:50379079-50379098 | MS.gene035828:intron | 30.0% |
| ! | TCCGTTTGATTTAAACTTTG+TGG | - | chr3.4:50377775-50377794 | MS.gene035828:intron | 30.0% |
| ! | TGGGATATATGTATTGCTTT+TGG | - | chr3.4:50378480-50378499 | MS.gene035828:intron | 30.0% |
| ! | TGTTTCTTGTTTCGATTTCT+AGG | - | chr3.4:50377719-50377738 | MS.gene035828:intron | 30.0% |
| !!! | AAATCTTTTGGTTCCACTTT+TGG | - | chr3.4:50378600-50378619 | MS.gene035828:intron | 30.0% |
| !!! | AATCTTTTGGTTCCACTTTT+GGG | - | chr3.4:50378601-50378620 | MS.gene035828:intron | 30.0% |
| !!! | GATTTTTAACTTCGGTTACT+TGG | - | chr3.4:50377804-50377823 | MS.gene035828:CDS | 30.0% |
| AAACGTGCAAACATGAAAAG+TGG | + | chr3.4:50378682-50378701 | None:intergenic | 35.0% | |
| ATACAGATTGCAGACATGAA+GGG | + | chr3.4:50379062-50379081 | None:intergenic | 35.0% | |
| ATATTGCAAGGGAACACTTT+CGG | + | chr3.4:50378888-50378907 | None:intergenic | 35.0% | |
| CTCTCCAATTGATATTGCAA+GGG | + | chr3.4:50378899-50378918 | None:intergenic | 35.0% | |
| GCAATATCAATTGGAGAGAA+TGG | - | chr3.4:50378901-50378920 | MS.gene035828:intron | 35.0% | |
| GTCTGCAATCTGTATAAGTT+TGG | - | chr3.4:50379067-50379086 | MS.gene035828:intron | 35.0% | |
| GTGATGTTTAATTAGAGAGC+AGG | - | chr3.4:50378821-50378840 | MS.gene035828:intron | 35.0% | |
| TATACAGATTGCAGACATGA+AGG | + | chr3.4:50379063-50379082 | None:intergenic | 35.0% | |
| TCTCTCCAATTGATATTGCA+AGG | + | chr3.4:50378900-50378919 | None:intergenic | 35.0% | |
| TCTTGGTTACTGTCGTAAAT+TGG | - | chr3.4:50379372-50379391 | MS.gene035828:intron | 35.0% | |
| TGTTCCCTTGCAATATCAAT+TGG | - | chr3.4:50378892-50378911 | MS.gene035828:intron | 35.0% | |
| TTGGACATTTCAAAGTGAAC+TGG | - | chr3.4:50379187-50379206 | MS.gene035828:intron | 35.0% | |
| TTGGGTGATATGGAAACATT+AGG | - | chr3.4:50378619-50378638 | MS.gene035828:intron | 35.0% | |
| ! | AAAGAGTTTTACTCTGGTGT+TGG | - | chr3.4:50379217-50379236 | MS.gene035828:intron | 35.0% |
| ! | ATGCTAATCTTGGTCTGTTT+TGG | - | chr3.4:50379422-50379441 | MS.gene035828:intron | 35.0% |
| ! | TGAGTGATAGCCAAATCTTT+TGG | - | chr3.4:50378588-50378607 | MS.gene035828:intron | 35.0% |
| ! | TGGTATCTTGTTGATGAGTT+GGG | - | chr3.4:50378461-50378480 | MS.gene035828:intron | 35.0% |
| ! | TGTCTGACATCCATGTTTTA+TGG | - | chr3.4:50379664-50379683 | MS.gene035828:intron | 35.0% |
| !! | ATGGTAACGAAGTGTTTTTC+AGG | - | chr3.4:50379455-50379474 | MS.gene035828:intron | 35.0% |
| !! | TTTGAGATTGTTTTCGTCGT+TGG | + | chr3.4:50378349-50378368 | None:intergenic | 35.0% |
| !! | TTTTACTCTGGTGTTGGATT+TGG | - | chr3.4:50379223-50379242 | MS.gene035828:intron | 35.0% |
| !!! | AAGTGTTTTTCAGGATCAAG+AGG | - | chr3.4:50379464-50379483 | MS.gene035828:intron | 35.0% |
| !!! | GGATCGGTGATTTTTAACTT+CGG | - | chr3.4:50377796-50377815 | MS.gene035828:CDS | 35.0% |
| GTCATATTCACGAACCTCAT+CGG | + | chr3.4:50379599-50379618 | None:intergenic | 40.0% | |
| GTTTCCATATCACCCAAAAG+TGG | + | chr3.4:50378616-50378635 | None:intergenic | 40.0% | |
| TCATATTCACGAACCTCATC+GGG | + | chr3.4:50379598-50379617 | None:intergenic | 40.0% | |
| TGTATGCTGGAATGCTTATG+TGG | - | chr3.4:50378441-50378460 | MS.gene035828:intron | 40.0% | |
| TTCAGTTGGAGATGGAAGAT+GGG | - | chr3.4:50379705-50379724 | MS.gene035828:CDS | 40.0% | |
| TTCTTGTCTTCCTCAGTGTT+GGG | + | chr3.4:50377646-50377665 | None:intergenic | 40.0% | |
| TTTCAGTTGGAGATGGAAGA+TGG | - | chr3.4:50379704-50379723 | MS.gene035828:CDS | 40.0% | |
| ! | GTGGTATCTTGTTGATGAGT+TGG | - | chr3.4:50378460-50378479 | MS.gene035828:intron | 40.0% |
| ! | TGGTTACATGGAACTAGTCT+TGG | - | chr3.4:50379355-50379374 | MS.gene035828:intron | 40.0% |
| !! | CCATCGCTTTTCTCTTTGAT+GGG | - | chr3.4:50379548-50379567 | MS.gene035828:intron | 40.0% |
| !! | CTGTTTTGGATGTTGTAGGA+TGG | - | chr3.4:50379436-50379455 | MS.gene035828:intron | 40.0% |
| !! | TCCATCGCTTTTCTCTTTGA+TGG | - | chr3.4:50379547-50379566 | MS.gene035828:intron | 40.0% |
| !! | TGGTCTGTTTTGGATGTTGT+AGG | - | chr3.4:50379432-50379451 | MS.gene035828:intron | 40.0% |
| !! | TGTCTTGTTTCAGTTGGAGA+TGG | - | chr3.4:50379697-50379716 | MS.gene035828:CDS | 40.0% |
| AGAGCAGGGATAGTGTGTAT+CGG | - | chr3.4:50378836-50378855 | MS.gene035828:intron | 45.0% | |
| CACATCAACCTCAAGGTCAA+GGG | - | chr3.4:50377685-50377704 | MS.gene035828:intron | 45.0% | |
| CCCATCAAAGAGAAAAGCGA+TGG | + | chr3.4:50379551-50379570 | None:intergenic | 45.0% | |
| CTTCTTGTCTTCCTCAGTGT+TGG | + | chr3.4:50377647-50377666 | None:intergenic | 45.0% | |
| TCACATCAACCTCAAGGTCA+AGG | - | chr3.4:50377684-50377703 | MS.gene035828:intron | 45.0% | |
| TCAGTTGGAGATGGAAGATG+GGG | - | chr3.4:50379706-50379725 | MS.gene035828:CDS | 45.0% | |
| TGGTTTCATACACTGTCGTG+TGG | + | chr3.4:50378167-50378186 | None:intergenic | 45.0% | |
| TTACTGTGATCGTCAGTCTG+TGG | - | chr3.4:50379516-50379535 | MS.gene035828:intron | 45.0% | |
| ! | TACTCTGGTGTTGGATTTGG+TGG | - | chr3.4:50379226-50379245 | MS.gene035828:intron | 45.0% |
| !! | GGTTCCACTTTTGGGTGATA+TGG | - | chr3.4:50378609-50378628 | MS.gene035828:intron | 45.0% |
| !! | AATTATTATCAAAATATATT+TGG | + | chr3.4:50379645-50379664 | None:intergenic | 5.0% |
| ACCTCCTGTCTGATGAAGCA+TGG | + | chr3.4:50379744-50379763 | None:intergenic | 50.0% | |
| GAAGACAAGAAGCCAGAAGC+TGG | - | chr3.4:50377655-50377674 | MS.gene035828:CDS | 50.0% | |
| GATGCCATGCTTCATCAGAC+AGG | - | chr3.4:50379737-50379756 | MS.gene035828:CDS | 50.0% | |
| TGGTGCTCACATCAACCTCA+AGG | - | chr3.4:50377678-50377697 | MS.gene035828:intron | 50.0% | |
| ATGTGAGCACCACCAGCTTC+TGG | + | chr3.4:50377670-50377689 | None:intergenic | 55.0% | |
| CAACCTCAAGGTCAAGGGTC+AGG | - | chr3.4:50377690-50377709 | MS.gene035828:intron | 55.0% | |
| GAACCTGACCCTTGACCTTG+AGG | + | chr3.4:50377696-50377715 | None:intergenic | 55.0% | |
| GACAAGAAGCCAGAAGCTGG+TGG | - | chr3.4:50377658-50377677 | MS.gene035828:CDS | 55.0% | |
| GCCATGCTTCATCAGACAGG+AGG | - | chr3.4:50379740-50379759 | MS.gene035828:CDS | 55.0% | |
| CATCGGGAGTCTGCTCAGCA+CGG | + | chr3.4:50379582-50379601 | None:intergenic | 60.0% | |
| TGCAGCTGCTCCCAACACTG+AGG | - | chr3.4:50377633-50377652 | MS.gene035828:CDS | 60.0% | |
| TGCTGAGCAGACTCCCGATG+AGG | - | chr3.4:50379582-50379601 | MS.gene035828:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 50377622 | 50379775 | 50377622 | ID=MS.gene035828 |
| chr3.4 | mRNA | 50377622 | 50379775 | 50377622 | ID=MS.gene035828.t1;Parent=MS.gene035828 |
| chr3.4 | exon | 50379686 | 50379775 | 50379686 | ID=MS.gene035828.t1.exon1;Parent=MS.gene035828.t1 |
| chr3.4 | CDS | 50379686 | 50379775 | 50379686 | ID=cds.MS.gene035828.t1;Parent=MS.gene035828.t1 |
| chr3.4 | exon | 50377794 | 50377943 | 50377794 | ID=MS.gene035828.t1.exon2;Parent=MS.gene035828.t1 |
| chr3.4 | CDS | 50377794 | 50377943 | 50377794 | ID=cds.MS.gene035828.t1;Parent=MS.gene035828.t1 |
| chr3.4 | exon | 50377622 | 50377687 | 50377622 | ID=MS.gene035828.t1.exon3;Parent=MS.gene035828.t1 |
| chr3.4 | CDS | 50377622 | 50377687 | 50377622 | ID=cds.MS.gene035828.t1;Parent=MS.gene035828.t1 |
| Gene Sequence |
| Protein sequence |
