Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043645.t1 | XP_013459866.1 | 100 | 101 | 0 | 0 | 1 | 101 | 1 | 101 | 3.00E-49 | 204.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043645.t1 | P55852 | 92.3 | 91 | 7 | 0 | 9 | 99 | 4 | 94 | 1.4e-42 | 173.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043645.t1 | I3SU86 | 100.0 | 101 | 0 | 0 | 1 | 101 | 1 | 101 | 2.1e-49 | 204.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043645.t1 | MTR_3g053540 | 100.000 | 101 | 0 | 0 | 1 | 101 | 1 | 101 | 1.20e-72 | 211 |
| MS.gene043645.t1 | MTR_3g053520 | 98.020 | 101 | 2 | 0 | 1 | 101 | 1 | 101 | 2.23e-71 | 207 |
| MS.gene043645.t1 | MTR_8g010480 | 59.459 | 74 | 30 | 0 | 21 | 94 | 165 | 238 | 2.35e-27 | 102 |
| MS.gene043645.t1 | MTR_8g010480 | 61.972 | 71 | 27 | 0 | 23 | 93 | 244 | 314 | 1.33e-22 | 89.4 |
| MS.gene043645.t1 | MTR_8g010480 | 55.128 | 78 | 31 | 1 | 20 | 93 | 83 | 160 | 9.56e-22 | 87.0 |
| MS.gene043645.t1 | MTR_8g010480 | 43.678 | 87 | 46 | 2 | 15 | 100 | 2 | 86 | 5.60e-16 | 71.6 |
| MS.gene043645.t1 | MTR_8g010490 | 46.237 | 93 | 49 | 1 | 3 | 95 | 10 | 101 | 1.60e-26 | 97.1 |
| MS.gene043645.t1 | MTR_8g010490 | 52.632 | 76 | 36 | 0 | 23 | 98 | 108 | 183 | 7.15e-22 | 85.1 |
| MS.gene043645.t1 | MTR_8g085340 | 38.710 | 93 | 56 | 1 | 10 | 101 | 14 | 106 | 2.91e-18 | 74.3 |
| MS.gene043645.t1 | MTR_8g085320 | 33.333 | 99 | 65 | 1 | 1 | 98 | 1 | 99 | 8.80e-18 | 72.4 |
| MS.gene043645.t1 | MTR_3g053640 | 50.000 | 70 | 35 | 0 | 20 | 89 | 82 | 151 | 1.19e-15 | 70.9 |
| MS.gene043645.t1 | MTR_3g053640 | 51.562 | 64 | 31 | 0 | 29 | 92 | 15 | 78 | 1.71e-15 | 70.5 |
| MS.gene043645.t1 | MTR_0007s0030 | 64.103 | 39 | 14 | 0 | 48 | 86 | 1 | 39 | 1.53e-14 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043645.t1 | AT4G26840 | 90.000 | 90 | 9 | 0 | 7 | 96 | 2 | 91 | 3.86e-57 | 171 |
| MS.gene043645.t1 | AT5G55160 | 90.426 | 94 | 6 | 2 | 5 | 98 | 2 | 92 | 4.53e-57 | 171 |
| MS.gene043645.t1 | AT5G55160 | 79.439 | 107 | 6 | 3 | 5 | 98 | 2 | 105 | 1.64e-53 | 163 |
| MS.gene043645.t1 | AT5G55856 | 49.438 | 89 | 45 | 0 | 10 | 98 | 2 | 90 | 1.38e-26 | 94.4 |
| MS.gene043645.t1 | AT5G55170 | 51.685 | 89 | 41 | 1 | 12 | 98 | 5 | 93 | 1.03e-25 | 92.8 |
| MS.gene043645.t1 | AT5G55855 | 47.674 | 86 | 45 | 0 | 13 | 98 | 5 | 90 | 2.13e-24 | 89.0 |
| MS.gene043645.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 9.67e-23 | 85.1 |
| MS.gene043645.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 9.67e-23 | 85.1 |
| MS.gene043645.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 9.67e-23 | 85.1 |
| MS.gene043645.t1 | AT5G55170 | 48.315 | 89 | 40 | 2 | 12 | 98 | 5 | 89 | 2.83e-21 | 81.3 |
| MS.gene043645.t1 | AT2G32765 | 37.778 | 90 | 55 | 1 | 10 | 98 | 14 | 103 | 1.98e-20 | 79.0 |
| MS.gene043645.t1 | AT5G55170 | 49.296 | 71 | 34 | 1 | 12 | 80 | 5 | 75 | 7.39e-18 | 72.4 |
| MS.gene043645.t1 | AT5G48700 | 42.222 | 90 | 50 | 2 | 11 | 98 | 19 | 108 | 9.23e-18 | 72.4 |
| MS.gene043645.t1 | AT5G48710 | 39.437 | 71 | 42 | 1 | 12 | 81 | 17 | 87 | 5.73e-14 | 62.4 |
Find 31 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGGAATGAAGTGTTCTTT+AGG | 0.336414 | 3.1:+39597724 | MS.gene043645:CDS |
| GATGTGAGCACCACCTGCTT+CGG | 0.338312 | 3.1:-39596139 | None:intergenic |
| TTCTTGTCTTCCTCGGTGTT+GGG | 0.340524 | 3.1:-39596114 | None:intergenic |
| ATGTGAGCACCACCTGCTTC+GGG | 0.344186 | 3.1:-39596138 | None:intergenic |
| CTTCTTGTCTTCCTCGGTGT+TGG | 0.351501 | 3.1:-39596115 | None:intergenic |
| TCGTTAACACAAACCTCATC+TGG | 0.369553 | 3.1:-39597864 | None:intergenic |
| GAACCTGGCCCTTGACTTTG+AGG | 0.387240 | 3.1:-39596164 | None:intergenic |
| TTCGGGCTTCTTGTCTTCCT+CGG | 0.415650 | 3.1:-39596121 | None:intergenic |
| GAAGACAAGAAGCCCGAAGC+AGG | 0.445397 | 3.1:+39596126 | MS.gene043645:CDS |
| CGGAAACTGAAGATGTCGTC+AGG | 0.500483 | 3.1:+39596081 | None:intergenic |
| GTCTTCCTCGGTGTTGGGAG+CGG | 0.500639 | 3.1:-39596109 | None:intergenic |
| TTGCAGCTGGAAATGGAAGA+TGG | 0.502872 | 3.1:+39597967 | MS.gene043645:intron |
| CGTTAACACAAACCTCATCT+GGG | 0.533016 | 3.1:-39597863 | None:intergenic |
| GACGCCATGCTTCATCAGAC+AGG | 0.558207 | 3.1:+39598000 | MS.gene043645:CDS |
| AAGTGTTCTTTAGGATCAAG+AGG | 0.569229 | 3.1:+39597733 | MS.gene043645:CDS |
| TGCAGCTGGAAATGGAAGAT+GGG | 0.572615 | 3.1:+39597968 | MS.gene043645:intron |
| CAACCTCAAAGTCAAGGGCC+AGG | 0.579447 | 3.1:+39596161 | MS.gene043645:CDS |
| ACCTCCTGTCTGATGAAGCA+TGG | 0.580486 | 3.1:-39598004 | None:intergenic |
| CCCATCAAATAGAAAAGCAA+TGG | 0.583133 | 3.1:-39597817 | None:intergenic |
| TCACATCAACCTCAAAGTCA+AGG | 0.600994 | 3.1:+39596155 | MS.gene043645:CDS |
| TGCGGAGCAGACCCCAGATG+AGG | 0.610800 | 3.1:+39597851 | MS.gene043645:CDS |
| CACATCAACCTCAAAGTCAA+GGG | 0.612548 | 3.1:+39596156 | MS.gene043645:CDS |
| CATCTGGGGTCTGCTCCGCA+CGG | 0.618051 | 3.1:-39597848 | None:intergenic |
| GACAAGAAGCCCGAAGCAGG+TGG | 0.627526 | 3.1:+39596129 | MS.gene043645:CDS |
| GCCATGCTTCATCAGACAGG+AGG | 0.629302 | 3.1:+39598003 | MS.gene043645:CDS |
| TTACTGTGATCGTCAGTCTG+TGG | 0.670146 | 3.1:+39597785 | MS.gene043645:CDS |
| CTGGGGTCTGCTCCGCACGG+AGG | 0.676566 | 3.1:-39597845 | None:intergenic |
| GCAGCTGGAAATGGAAGATG+GGG | 0.677394 | 3.1:+39597969 | MS.gene043645:intron |
| TGATGGGCGTCGCCTCCGTG+CGG | 0.705266 | 3.1:+39597833 | MS.gene043645:CDS |
| GTTAACACAAACCTCATCTG+GGG | 0.716440 | 3.1:-39597862 | None:intergenic |
| TGCAGCCGCTCCCAACACCG+AGG | 0.722402 | 3.1:+39596104 | MS.gene043645:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAACATGTTTAAATTAA+CGG | + | chr3.1:39597204-39597223 | MS.gene043645:intron | 10.0% |
| !!! | TTTTAAGAATAATTACATTA+TGG | + | chr3.1:39596843-39596862 | MS.gene043645:intron | 10.0% |
| !!! | TATTTTATTGAATTTGTGTT+AGG | + | chr3.1:39596549-39596568 | MS.gene043645:intron | 15.0% |
| !!! | TTTTTACATGTTTAGATTAA+CGG | + | chr3.1:39596391-39596410 | MS.gene043645:intron | 15.0% |
| !! | AACAAAAAATGAGATAACAT+AGG | - | chr3.1:39597499-39597518 | None:intergenic | 20.0% |
| !! | AGTTTGTATACATTATAAGA+TGG | + | chr3.1:39596920-39596939 | MS.gene043645:intron | 20.0% |
| !! | ATCAAATTAACCATAAATCT+AGG | - | chr3.1:39596824-39596843 | None:intergenic | 20.0% |
| !! | CCTTACAAATTGTATATAAA+CGG | - | chr3.1:39596575-39596594 | None:intergenic | 20.0% |
| !!! | AGTTATAACATTTTCAGAAA+TGG | + | chr3.1:39597566-39597585 | MS.gene043645:intron | 20.0% |
| !!! | ATTCGATCGTTAATTTTTTA+GGG | + | chr3.1:39596248-39596267 | MS.gene043645:intron | 20.0% |
| !!! | ATTTTAATATGTTCTAGGAT+GGG | + | chr3.1:39597706-39597725 | MS.gene043645:intron | 20.0% |
| !!! | GTATATGATTTGTTGAAAAT+AGG | + | chr3.1:39597161-39597180 | MS.gene043645:intron | 20.0% |
| !!! | TAGATTCAAGGTATTAATAA+CGG | + | chr3.1:39596652-39596671 | MS.gene043645:intron | 20.0% |
| !!! | TATTCGATCGTTAATTTTTT+AGG | + | chr3.1:39596247-39596266 | MS.gene043645:intron | 20.0% |
| !!! | TTTGGATTTTAATATGTTCT+AGG | + | chr3.1:39597701-39597720 | MS.gene043645:intron | 20.0% |
| !!! | TTTGTAAGGAATTTTTGTTT+TGG | + | chr3.1:39596586-39596605 | MS.gene043645:intron | 20.0% |
| !!! | TTTTTAGGAAGGAAAAAAAA+GGG | - | chr3.1:39596793-39596812 | None:intergenic | 20.0% |
| ! | AAAATTAGCATACATAACTC+TGG | - | chr3.1:39597683-39597702 | None:intergenic | 25.0% |
| ! | AACATTGAAACCTAGATTTA+TGG | + | chr3.1:39596811-39596830 | MS.gene043645:intron | 25.0% |
| ! | CAAATATTGATGTAACGTTA+TGG | - | chr3.1:39597009-39597028 | None:intergenic | 25.0% |
| ! | CCGTTTATATACAATTTGTA+AGG | + | chr3.1:39596572-39596591 | MS.gene043645:intron | 25.0% |
| ! | TAGTTCTTATCAAAATCACT+TGG | + | chr3.1:39596462-39596481 | MS.gene043645:intron | 25.0% |
| !! | AAAATATATTTTGTTGCAGC+TGG | + | chr3.1:39597954-39597973 | MS.gene043645:intron | 25.0% |
| !! | AGATTCAAGGTATTAATAAC+GGG | + | chr3.1:39596653-39596672 | MS.gene043645:intron | 25.0% |
| !! | ATCTAGGTTTCAATGTTTTT+AGG | - | chr3.1:39596808-39596827 | None:intergenic | 25.0% |
| !! | GAGTTATGTATGCTAATTTT+TGG | + | chr3.1:39597683-39597702 | MS.gene043645:intron | 25.0% |
| !!! | GATTTTAATATGTTCTAGGA+TGG | + | chr3.1:39597705-39597724 | MS.gene043645:intron | 25.0% |
| !!! | GTTTTTAGGAAGGAAAAAAA+AGG | - | chr3.1:39596794-39596813 | None:intergenic | 25.0% |
| !!! | TTTTAGGAAGGAAAAAAAAG+GGG | - | chr3.1:39596792-39596811 | None:intergenic | 25.0% |
| AAAAACACCATCAAGATGTT+TGG | - | chr3.1:39597334-39597353 | None:intergenic | 30.0% | |
| AACAAAAACCCTAAAATCGA+AGG | - | chr3.1:39596201-39596220 | None:intergenic | 30.0% | |
| AACAATCACAAACACAACAA+AGG | - | chr3.1:39596282-39596301 | None:intergenic | 30.0% | |
| AATCCAAACATAACTAAGAC+TGG | + | chr3.1:39596513-39596532 | MS.gene043645:intron | 30.0% | |
| ACGATATTGTTGAAGAACTA+GGG | + | chr3.1:39597123-39597142 | MS.gene043645:intron | 30.0% | |
| AGTCATAAAAACACGAATGT+TGG | - | chr3.1:39597933-39597952 | None:intergenic | 30.0% | |
| ATTCCAGTCTTAGTTATGTT+TGG | - | chr3.1:39596519-39596538 | None:intergenic | 30.0% | |
| GAATTGCTATGTTAGATTCA+AGG | + | chr3.1:39596640-39596659 | MS.gene043645:intron | 30.0% | |
| GATAACAGAAACCCAAAAAA+GGG | - | chr3.1:39597080-39597099 | None:intergenic | 30.0% | |
| GCGTTCATGTATAAACATAT+TGG | + | chr3.1:39597533-39597552 | MS.gene043645:intron | 30.0% | |
| GTATTGAATTTGTGTGTTAG+TGG | + | chr3.1:39597355-39597374 | MS.gene043645:intron | 30.0% | |
| TACGATATTGTTGAAGAACT+AGG | + | chr3.1:39597122-39597141 | MS.gene043645:intron | 30.0% | |
| TGATAACAGAAACCCAAAAA+AGG | - | chr3.1:39597081-39597100 | None:intergenic | 30.0% | |
| ! | GATTGTTTGTTGAAGAACTA+GGG | + | chr3.1:39596295-39596314 | MS.gene043645:intron | 30.0% |
| ! | TGATTGTTTGTTGAAGAACT+AGG | + | chr3.1:39596294-39596313 | MS.gene043645:intron | 30.0% |
| !! | CCATTGCTTTTCTATTTGAT+GGG | + | chr3.1:39597817-39597836 | MS.gene043645:CDS | 30.0% |
| !! | GTATTAATAACGGGTTTGTT+CGG | + | chr3.1:39596662-39596681 | MS.gene043645:intron | 30.0% |
| !!! | AGGTTTCAATGTTTTTAGGA+AGG | - | chr3.1:39596804-39596823 | None:intergenic | 30.0% |
| AAGGTTGTATTGTAAGCTTG+CGG | - | chr3.1:39596713-39596732 | None:intergenic | 35.0% | |
| AGTTATGTTTGGATTGACGA+TGG | - | chr3.1:39596508-39596527 | None:intergenic | 35.0% | |
| CATCAAGATGTTTGGATTGA+AGG | - | chr3.1:39597326-39597345 | None:intergenic | 35.0% | |
| CCCATCAAATAGAAAAGCAA+TGG | - | chr3.1:39597820-39597839 | None:intergenic | 35.0% | |
| CTGTTTACATACCATATGGT+AGG | + | chr3.1:39597379-39597398 | MS.gene043645:intron | 35.0% | |
| CTTCAATCCAAACATCTTGA+TGG | + | chr3.1:39597324-39597343 | MS.gene043645:intron | 35.0% | |
| GAACTAGGGTTAATATCACT+AGG | + | chr3.1:39597137-39597156 | MS.gene043645:intron | 35.0% | |
| GCAGTTCATATCAAATCACT+TGG | + | chr3.1:39597277-39597296 | MS.gene043645:intron | 35.0% | |
| GTTCTTCAACAATATCGTAC+AGG | - | chr3.1:39597121-39597140 | None:intergenic | 35.0% | |
| TATTTGCGAAATCCTTTACG+CGG | + | chr3.1:39597023-39597042 | MS.gene043645:intron | 35.0% | |
| TGGACTGTTTACATACCATA+TGG | + | chr3.1:39597375-39597394 | MS.gene043645:intron | 35.0% | |
| ! | AAAGTTCCACAGTGATTTTG+TGG | - | chr3.1:39596423-39596442 | None:intergenic | 35.0% |
| ! | ACCATATGGTAGGACTTTTT+GGG | + | chr3.1:39597389-39597408 | MS.gene043645:intron | 35.0% |
| ! | ATGGGAATGAAGTGTTCTTT+AGG | + | chr3.1:39597724-39597743 | MS.gene043645:CDS | 35.0% |
| ! | CTTGTTTAAGACCTTGGTTA+GGG | + | chr3.1:39597053-39597072 | MS.gene043645:intron | 35.0% |
| ! | TACCATATGGTAGGACTTTT+TGG | + | chr3.1:39597388-39597407 | MS.gene043645:intron | 35.0% |
| ! | TATTTTGTTGCAGCTGGAAA+TGG | + | chr3.1:39597960-39597979 | MS.gene043645:intron | 35.0% |
| ! | TGTCTCTTCCTTCGATTTTA+GGG | + | chr3.1:39596190-39596209 | MS.gene043645:intron | 35.0% |
| ! | TTGTCTCTTCCTTCGATTTT+AGG | + | chr3.1:39596189-39596208 | MS.gene043645:intron | 35.0% |
| ! | TTGTTCTCTATTGTTTTCCG+CGG | - | chr3.1:39596739-39596758 | None:intergenic | 35.0% |
| !! | AAGTGTTCTTTAGGATCAAG+AGG | + | chr3.1:39597733-39597752 | MS.gene043645:CDS | 35.0% |
| !! | GCCATTGCTTTTCTATTTGA+TGG | + | chr3.1:39597816-39597835 | MS.gene043645:CDS | 35.0% |
| !!! | TGGAAACGATGCATTGATTT+TGG | + | chr3.1:39596606-39596625 | MS.gene043645:intron | 35.0% |
| ACATAGGAGACAAGTTAGAG+TGG | - | chr3.1:39597483-39597502 | None:intergenic | 40.0% | |
| ACCAAGGTCTTAAACAAGGT+CGG | - | chr3.1:39597051-39597070 | None:intergenic | 40.0% | |
| ACCCAAAAAGTCCTACCATA+TGG | - | chr3.1:39597393-39597412 | None:intergenic | 40.0% | |
| CAAGATGTTTGGATTGAAGG+TGG | - | chr3.1:39597323-39597342 | None:intergenic | 40.0% | |
| CACATCAACCTCAAAGTCAA+GGG | + | chr3.1:39596156-39596175 | MS.gene043645:CDS | 40.0% | |
| CCTAACCAAGGTCTTAAACA+AGG | - | chr3.1:39597055-39597074 | None:intergenic | 40.0% | |
| CGTTAACACAAACCTCATCT+GGG | - | chr3.1:39597866-39597885 | None:intergenic | 40.0% | |
| GTTAACACAAACCTCATCTG+GGG | - | chr3.1:39597865-39597884 | None:intergenic | 40.0% | |
| GTTTGGATTGAAGGTGGAAT+TGG | - | chr3.1:39597317-39597336 | None:intergenic | 40.0% | |
| GTTTGGATTGACGATGGAAT+TGG | - | chr3.1:39596502-39596521 | None:intergenic | 40.0% | |
| TACAATACAACCTTAGACCG+CGG | + | chr3.1:39596719-39596738 | MS.gene043645:intron | 40.0% | |
| TCACATCAACCTCAAAGTCA+AGG | + | chr3.1:39596155-39596174 | MS.gene043645:CDS | 40.0% | |
| TCGTTAACACAAACCTCATC+TGG | - | chr3.1:39597867-39597886 | None:intergenic | 40.0% | |
| TGAGTTCCACAAAATCACTG+TGG | + | chr3.1:39596414-39596433 | MS.gene043645:intron | 40.0% | |
| TTGAAGAACTAGGGTTTCTC+TGG | + | chr3.1:39596304-39596323 | MS.gene043645:intron | 40.0% | |
| ! | CCTTGTTTAAGACCTTGGTT+AGG | + | chr3.1:39597052-39597071 | MS.gene043645:intron | 40.0% |
| ! | GGTGGCACTTTGATTTAATG+AGG | + | chr3.1:39597245-39597264 | MS.gene043645:intron | 40.0% |
| !!! | TTGGTTAGGGTCCCTTTTTT+GGG | + | chr3.1:39597066-39597085 | MS.gene043645:intron | 40.0% |
| AAGGAAGAGACAAACGAACC+TGG | - | chr3.1:39596182-39596201 | None:intergenic | 45.0% | |
| CAAAAAAGGGACCCTAACCA+AGG | - | chr3.1:39597067-39597086 | None:intergenic | 45.0% | |
| CAAGGTCTTAAACAAGGTCG+GGG | - | chr3.1:39597049-39597068 | None:intergenic | 45.0% | |
| CCAAGGTCTTAAACAAGGTC+GGG | - | chr3.1:39597050-39597069 | None:intergenic | 45.0% | |
| CGGTGAACTTGACAAACTCA+CGG | + | chr3.1:39597224-39597243 | MS.gene043645:intron | 45.0% | |
| TGAACTTGACAAACTCACGG+TGG | + | chr3.1:39597227-39597246 | MS.gene043645:intron | 45.0% | |
| TGCAGCTGGAAATGGAAGAT+GGG | + | chr3.1:39597968-39597987 | MS.gene043645:intron | 45.0% | |
| TTACTGTGATCGTCAGTCTG+TGG | + | chr3.1:39597785-39597804 | MS.gene043645:CDS | 45.0% | |
| TTGCAGCTGGAAATGGAAGA+TGG | + | chr3.1:39597967-39597986 | MS.gene043645:intron | 45.0% | |
| ! | CTATTGTTTTCCGCGGTCTA+AGG | - | chr3.1:39596732-39596751 | None:intergenic | 45.0% |
| !! | TTCTTGTCTTCCTCGGTGTT+GGG | - | chr3.1:39596117-39596136 | None:intergenic | 45.0% |
| !!! | CTTGGTTAGGGTCCCTTTTT+TGG | + | chr3.1:39597065-39597084 | MS.gene043645:intron | 45.0% |
| !!! | ATGAAAATTTTAAAAATAAA+AGG | + | chr3.1:39596364-39596383 | MS.gene043645:intron | 5.0% |
| ACCTCCTGTCTGATGAAGCA+TGG | - | chr3.1:39598007-39598026 | None:intergenic | 50.0% | |
| GCAGCTGGAAATGGAAGATG+GGG | + | chr3.1:39597969-39597988 | MS.gene043645:intron | 50.0% | |
| TTCGGGCTTCTTGTCTTCCT+CGG | - | chr3.1:39596124-39596143 | None:intergenic | 50.0% | |
| ! | CCCGACCTTGTTTAAGACCT+TGG | + | chr3.1:39597047-39597066 | MS.gene043645:intron | 50.0% |
| ! | CTTCTTGTCTTCCTCGGTGT+TGG | - | chr3.1:39596118-39596137 | None:intergenic | 50.0% |
| ! | GTTATGGATTGCAGTCGTCG+CGG | - | chr3.1:39596993-39597012 | None:intergenic | 50.0% |
| ATGTGAGCACCACCTGCTTC+GGG | - | chr3.1:39596141-39596160 | None:intergenic | 55.0% | |
| CAACCTCAAAGTCAAGGGCC+AGG | + | chr3.1:39596161-39596180 | MS.gene043645:CDS | 55.0% | |
| GAACCTGGCCCTTGACTTTG+AGG | - | chr3.1:39596167-39596186 | None:intergenic | 55.0% | |
| GAAGACAAGAAGCCCGAAGC+AGG | + | chr3.1:39596126-39596145 | MS.gene043645:CDS | 55.0% | |
| GACGCCATGCTTCATCAGAC+AGG | + | chr3.1:39598000-39598019 | MS.gene043645:CDS | 55.0% | |
| GATGTGAGCACCACCTGCTT+CGG | - | chr3.1:39596142-39596161 | None:intergenic | 55.0% | |
| GCCATGCTTCATCAGACAGG+AGG | + | chr3.1:39598003-39598022 | MS.gene043645:CDS | 55.0% | |
| GCTTGCGGCGTTCGTAATCA+CGG | - | chr3.1:39596698-39596717 | None:intergenic | 55.0% | |
| GACAAGAAGCCCGAAGCAGG+TGG | + | chr3.1:39596129-39596148 | MS.gene043645:CDS | 60.0% | |
| !! | GTCTTCCTCGGTGTTGGGAG+CGG | - | chr3.1:39596112-39596131 | None:intergenic | 60.0% |
| ACAAGGTCGGGGCCGCGTAA+AGG | - | chr3.1:39597038-39597057 | None:intergenic | 65.0% | |
| TGCGGAGCAGACCCCAGATG+AGG | + | chr3.1:39597851-39597870 | MS.gene043645:CDS | 65.0% | |
| ! | CATCTGGGGTCTGCTCCGCA+CGG | - | chr3.1:39597851-39597870 | None:intergenic | 65.0% |
| TGCAGCCGCTCCCAACACCG+AGG | + | chr3.1:39596104-39596123 | MS.gene043645:CDS | 70.0% | |
| ! | TGATGGGCGTCGCCTCCGTG+CGG | + | chr3.1:39597833-39597852 | MS.gene043645:CDS | 70.0% |
| CTGGGGTCTGCTCCGCACGG+AGG | - | chr3.1:39597848-39597867 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 39596093 | 39598038 | 39596093 | ID=MS.gene043645 |
| chr3.1 | mRNA | 39596093 | 39598038 | 39596093 | ID=MS.gene043645.t1;Parent=MS.gene043645 |
| chr3.1 | exon | 39596093 | 39596182 | 39596093 | ID=MS.gene043645.t1.exon1;Parent=MS.gene043645.t1 |
| chr3.1 | CDS | 39596093 | 39596182 | 39596093 | ID=cds.MS.gene043645.t1;Parent=MS.gene043645.t1 |
| chr3.1 | exon | 39597723 | 39597872 | 39597723 | ID=MS.gene043645.t1.exon2;Parent=MS.gene043645.t1 |
| chr3.1 | CDS | 39597723 | 39597872 | 39597723 | ID=cds.MS.gene043645.t1;Parent=MS.gene043645.t1 |
| chr3.1 | exon | 39597973 | 39598038 | 39597973 | ID=MS.gene043645.t1.exon3;Parent=MS.gene043645.t1 |
| chr3.1 | CDS | 39597973 | 39598038 | 39597973 | ID=cds.MS.gene043645.t1;Parent=MS.gene043645.t1 |
| Gene Sequence |
| Protein sequence |
