Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064353.t1 | XP_013459866.1 | 99 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 8.70E-49 | 202.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064353.t1 | P55852 | 93.4 | 91 | 6 | 0 | 9 | 99 | 4 | 94 | 8.0e-43 | 174.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064353.t1 | I3SU86 | 99.0 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 6.2e-49 | 202.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene064353 | 0.854397 | 1.27E-61 | -1.69E-46 |
| MS.gene049159 | MS.gene064353 | 0.849131 | 3.94E-60 | -1.69E-46 |
| MS.gene049254 | MS.gene064353 | 0.813643 | 2.31E-51 | -1.69E-46 |
| MS.gene049343 | MS.gene064353 | 0.815254 | 1.02E-51 | -1.69E-46 |
| MS.gene049368 | MS.gene064353 | 0.813844 | 2.08E-51 | -1.69E-46 |
| MS.gene049501 | MS.gene064353 | 0.804058 | 2.59E-49 | -1.69E-46 |
| MS.gene049647 | MS.gene064353 | 0.804671 | 1.93E-49 | -1.69E-46 |
| MS.gene049821 | MS.gene064353 | 0.804955 | 1.68E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene064353 | 0.817462 | 3.26E-52 | -1.69E-46 |
| MS.gene050156 | MS.gene064353 | 0.800784 | 1.23E-48 | -1.69E-46 |
| MS.gene050442 | MS.gene064353 | 0.810843 | 9.42E-51 | -1.69E-46 |
| MS.gene05045 | MS.gene064353 | 0.810079 | 1.38E-50 | -1.69E-46 |
| MS.gene050719 | MS.gene064353 | 0.808275 | 3.35E-50 | -1.69E-46 |
| MS.gene050721 | MS.gene064353 | 0.805017 | 1.64E-49 | -1.69E-46 |
| MS.gene050724 | MS.gene064353 | 0.819011 | 1.45E-52 | -1.69E-46 |
| MS.gene050815 | MS.gene064353 | 0.817001 | 4.13E-52 | -1.69E-46 |
| MS.gene050826 | MS.gene064353 | 0.819877 | 9.22E-53 | -1.69E-46 |
| MS.gene050844 | MS.gene064353 | 0.819448 | 1.16E-52 | -1.69E-46 |
| MS.gene050953 | MS.gene064353 | 0.80454 | 2.06E-49 | -1.69E-46 |
| MS.gene051243 | MS.gene064353 | 0.809732 | 1.64E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene064353 | 0.818046 | 2.40E-52 | -1.69E-46 |
| MS.gene05134 | MS.gene064353 | 0.802127 | 6.50E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene064353 | 0.81158 | 6.52E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene064353 | 0.806205 | 9.21E-50 | -1.69E-46 |
| MS.gene051975 | MS.gene064353 | 0.817714 | 2.86E-52 | -1.69E-46 |
| MS.gene052012 | MS.gene064353 | 0.861735 | 8.33E-64 | -1.69E-46 |
| MS.gene052516 | MS.gene064353 | 0.812005 | 5.27E-51 | -1.69E-46 |
| MS.gene052519 | MS.gene064353 | 0.832351 | 9.94E-56 | -1.69E-46 |
| MS.gene052611 | MS.gene064353 | 0.801688 | 8.00E-49 | -1.69E-46 |
| MS.gene052773 | MS.gene064353 | 0.836231 | 1.06E-56 | -1.69E-46 |
| MS.gene052863 | MS.gene064353 | 0.841893 | 3.60E-58 | -1.69E-46 |
| MS.gene053008 | MS.gene064353 | 0.860646 | 1.79E-63 | -1.69E-46 |
| MS.gene053166 | MS.gene064353 | 0.814898 | 1.22E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene064353 | 0.825754 | 3.94E-54 | -1.69E-46 |
| MS.gene05364 | MS.gene064353 | 0.813284 | 2.77E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene064353 | 0.832958 | 7.02E-56 | -1.69E-46 |
| MS.gene054236 | MS.gene064353 | 0.817232 | 3.67E-52 | -1.69E-46 |
| MS.gene054472 | MS.gene064353 | 0.818527 | 1.87E-52 | -1.69E-46 |
| MS.gene054559 | MS.gene064353 | 0.816563 | 5.19E-52 | -1.69E-46 |
| MS.gene054651 | MS.gene064353 | 0.807754 | 4.33E-50 | -1.69E-46 |
| MS.gene054657 | MS.gene064353 | 0.818455 | 1.94E-52 | -1.69E-46 |
| MS.gene054658 | MS.gene064353 | 0.803337 | 3.66E-49 | -1.69E-46 |
| MS.gene05468 | MS.gene064353 | 0.805873 | 1.08E-49 | -1.69E-46 |
| MS.gene05510 | MS.gene064353 | 0.827816 | 1.27E-54 | -1.69E-46 |
| MS.gene05517 | MS.gene064353 | 0.825383 | 4.83E-54 | -1.69E-46 |
| MS.gene055310 | MS.gene064353 | 0.801618 | 8.27E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene064353 | 0.803172 | 3.96E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene064353 | 0.810215 | 1.29E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene064353 | 0.866883 | 2.06E-65 | -1.69E-46 |
| MS.gene055818 | MS.gene064353 | 0.856919 | 2.32E-62 | -1.69E-46 |
| MS.gene055926 | MS.gene064353 | 0.822457 | 2.34E-53 | -1.69E-46 |
| MS.gene05604 | MS.gene064353 | 0.841366 | 4.97E-58 | -1.69E-46 |
| MS.gene056215 | MS.gene064353 | 0.817567 | 3.08E-52 | -1.69E-46 |
| MS.gene056366 | MS.gene064353 | 0.835241 | 1.88E-56 | -1.69E-46 |
| MS.gene056506 | MS.gene064353 | 0.805202 | 1.50E-49 | -1.69E-46 |
| MS.gene056595 | MS.gene064353 | 0.842126 | 3.13E-58 | -1.69E-46 |
| MS.gene056699 | MS.gene064353 | 0.815675 | 8.19E-52 | -1.69E-46 |
| MS.gene056986 | MS.gene064353 | 0.813012 | 3.17E-51 | -1.69E-46 |
| MS.gene057026 | MS.gene064353 | 0.822862 | 1.89E-53 | -1.69E-46 |
| MS.gene057034 | MS.gene064353 | 0.833656 | 4.71E-56 | -1.69E-46 |
| MS.gene057060 | MS.gene064353 | 0.805292 | 1.43E-49 | -1.69E-46 |
| MS.gene057140 | MS.gene064353 | 0.816582 | 5.14E-52 | -1.69E-46 |
| MS.gene057208 | MS.gene064353 | 0.844758 | 6.20E-59 | -1.69E-46 |
| MS.gene057444 | MS.gene064353 | 0.814423 | 1.55E-51 | -1.69E-46 |
| MS.gene057693 | MS.gene064353 | 0.811835 | 5.74E-51 | -1.69E-46 |
| MS.gene057855 | MS.gene064353 | 0.800729 | 1.26E-48 | -1.69E-46 |
| MS.gene057915 | MS.gene064353 | 0.803977 | 2.69E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene064353 | 0.819399 | 1.19E-52 | -1.69E-46 |
| MS.gene058010 | MS.gene064353 | 0.821502 | 3.90E-53 | -1.69E-46 |
| MS.gene058146 | MS.gene064353 | 0.812058 | 5.13E-51 | -1.69E-46 |
| MS.gene05847 | MS.gene064353 | 0.810096 | 1.37E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene064353 | 0.804057 | 2.59E-49 | -1.69E-46 |
| MS.gene058636 | MS.gene064353 | 0.803868 | 2.84E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene064353 | 0.805916 | 1.06E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene064353 | 0.838616 | 2.59E-57 | -1.69E-46 |
| MS.gene059151 | MS.gene064353 | 0.820579 | 6.37E-53 | -1.69E-46 |
| MS.gene059283 | MS.gene064353 | 0.804751 | 1.86E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene064353 | 0.835828 | 1.34E-56 | -1.69E-46 |
| MS.gene060296 | MS.gene064353 | 0.826545 | 2.56E-54 | -1.69E-46 |
| MS.gene060322 | MS.gene064353 | 0.831744 | 1.40E-55 | -1.69E-46 |
| MS.gene060429 | MS.gene064353 | 0.813932 | 1.99E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene064353 | 0.868465 | 6.40E-66 | -1.69E-46 |
| MS.gene060637 | MS.gene064353 | 0.8052 | 1.50E-49 | -1.69E-46 |
| MS.gene060803 | MS.gene064353 | 0.853927 | 1.73E-61 | -1.69E-46 |
| MS.gene060907 | MS.gene064353 | 0.800482 | 1.41E-48 | -1.69E-46 |
| MS.gene060935 | MS.gene064353 | 0.806632 | 7.49E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene064353 | 0.822938 | 1.81E-53 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064353.t1 | MTR_3g053540 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 3.13e-72 | 209 |
| MS.gene064353.t1 | MTR_3g053520 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 6.60e-72 | 209 |
| MS.gene064353.t1 | MTR_8g010480 | 60.811 | 74 | 29 | 0 | 21 | 94 | 165 | 238 | 9.53e-28 | 102 |
| MS.gene064353.t1 | MTR_8g010480 | 61.972 | 71 | 27 | 0 | 23 | 93 | 244 | 314 | 1.64e-22 | 89.0 |
| MS.gene064353.t1 | MTR_8g010480 | 55.844 | 77 | 30 | 1 | 21 | 93 | 84 | 160 | 1.20e-21 | 86.7 |
| MS.gene064353.t1 | MTR_8g010480 | 44.828 | 87 | 45 | 2 | 15 | 100 | 2 | 86 | 2.62e-16 | 72.4 |
| MS.gene064353.t1 | MTR_8g010490 | 46.237 | 93 | 49 | 1 | 3 | 95 | 10 | 101 | 2.47e-26 | 96.3 |
| MS.gene064353.t1 | MTR_8g010490 | 52.632 | 76 | 36 | 0 | 23 | 98 | 108 | 183 | 8.14e-22 | 84.7 |
| MS.gene064353.t1 | MTR_8g085340 | 38.710 | 93 | 56 | 1 | 10 | 101 | 14 | 106 | 1.69e-18 | 74.7 |
| MS.gene064353.t1 | MTR_8g085320 | 33.333 | 99 | 65 | 1 | 1 | 98 | 1 | 99 | 5.82e-18 | 72.8 |
| MS.gene064353.t1 | MTR_3g053640 | 50.000 | 70 | 35 | 0 | 20 | 89 | 82 | 151 | 1.15e-15 | 71.2 |
| MS.gene064353.t1 | MTR_3g053640 | 51.562 | 64 | 31 | 0 | 29 | 92 | 15 | 78 | 2.70e-15 | 70.1 |
| MS.gene064353.t1 | MTR_0007s0030 | 66.667 | 39 | 13 | 0 | 48 | 86 | 1 | 39 | 5.92e-15 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene064353.t1 | AT5G55160 | 91.489 | 94 | 5 | 2 | 5 | 98 | 2 | 92 | 1.34e-57 | 172 |
| MS.gene064353.t1 | AT4G26840 | 91.111 | 90 | 8 | 0 | 7 | 96 | 2 | 91 | 1.35e-57 | 172 |
| MS.gene064353.t1 | AT5G55160 | 80.374 | 107 | 5 | 3 | 5 | 98 | 2 | 105 | 4.91e-54 | 164 |
| MS.gene064353.t1 | AT5G55856 | 49.438 | 89 | 45 | 0 | 10 | 98 | 2 | 90 | 1.01e-26 | 94.7 |
| MS.gene064353.t1 | AT5G55170 | 50.562 | 89 | 42 | 1 | 12 | 98 | 5 | 93 | 2.52e-25 | 91.7 |
| MS.gene064353.t1 | AT5G55855 | 46.512 | 86 | 46 | 0 | 13 | 98 | 5 | 90 | 6.87e-24 | 87.4 |
| MS.gene064353.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 6.53e-23 | 85.5 |
| MS.gene064353.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 6.53e-23 | 85.5 |
| MS.gene064353.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 6.53e-23 | 85.5 |
| MS.gene064353.t1 | AT5G55170 | 47.191 | 89 | 41 | 2 | 12 | 98 | 5 | 89 | 7.07e-21 | 80.1 |
| MS.gene064353.t1 | AT2G32765 | 43.421 | 76 | 43 | 0 | 23 | 98 | 28 | 103 | 7.67e-21 | 80.1 |
| MS.gene064353.t1 | AT5G48700 | 42.222 | 90 | 50 | 2 | 11 | 98 | 19 | 108 | 6.59e-18 | 72.8 |
| MS.gene064353.t1 | AT5G55170 | 47.887 | 71 | 35 | 1 | 12 | 80 | 5 | 75 | 2.17e-17 | 71.2 |
| MS.gene064353.t1 | AT5G48710 | 39.437 | 71 | 42 | 1 | 12 | 81 | 17 | 87 | 3.71e-14 | 62.8 |
Find 26 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTGTCTTCCTCAGTGTT+GGG | 0.315048 | 3.1:+40545573 | None:intergenic |
| GATGTGAGCACCACCTGCTT+CGG | 0.338312 | 3.1:+40545548 | None:intergenic |
| ATGTGAGCACCACCTGCTTC+GGG | 0.344186 | 3.1:+40545549 | None:intergenic |
| CTTCTTGTCTTCCTCAGTGT+TGG | 0.350298 | 3.1:+40545572 | None:intergenic |
| TTTCAGTTGGAGATGGAAGA+TGG | 0.431884 | 3.1:-40543506 | MS.gene064353:intron |
| TTCAGTTGGAGATGGAAGAT+GGG | 0.463188 | 3.1:-40543505 | MS.gene064353:intron |
| TCATATTCACGAACCTCATC+GGG | 0.477321 | 3.1:+40543615 | None:intergenic |
| GAAGACAAGAAGCCCGAAGC+AGG | 0.484807 | 3.1:-40545561 | MS.gene064353:CDS |
| GTCATATTCACGAACCTCAT+CGG | 0.504722 | 3.1:+40543614 | None:intergenic |
| GAGATTCTGAAGATGTCGTC+AGG | 0.514599 | 3.1:-40545606 | None:intergenic |
| CAACCTCAAGGTCAAGGGTC+AGG | 0.516757 | 3.1:-40545526 | MS.gene064353:intron |
| TGTCTTGTTTCAGTTGGAGA+TGG | 0.529171 | 3.1:-40543513 | MS.gene064353:intron |
| GATGCCATGCTTCATCAGAC+AGG | 0.571646 | 3.1:-40543473 | MS.gene064353:CDS |
| GAACCTGACCCTTGACCTTG+AGG | 0.575367 | 3.1:+40545523 | None:intergenic |
| CCCATCAAAGAGAAAAGCGA+TGG | 0.577412 | 3.1:+40543662 | None:intergenic |
| ACCTCCTGTCTGATGAAGCA+TGG | 0.580486 | 3.1:+40543469 | None:intergenic |
| TCACATCAACCTCAAGGTCA+AGG | 0.582181 | 3.1:-40545532 | MS.gene064353:CDS |
| CACATCAACCTCAAGGTCAA+GGG | 0.593562 | 3.1:-40545531 | MS.gene064353:CDS |
| GCCATGCTTCATCAGACAGG+AGG | 0.612346 | 3.1:-40543470 | MS.gene064353:CDS |
| GACAAGAAGCCCGAAGCAGG+TGG | 0.627526 | 3.1:-40545558 | MS.gene064353:CDS |
| CATCGGGAGTCTGCTCAGCA+CGG | 0.629541 | 3.1:+40543631 | None:intergenic |
| TGGTGCTCACATCAACCTCA+AGG | 0.636973 | 3.1:-40545538 | MS.gene064353:CDS |
| TGCTGAGCAGACTCCCGATG+AGG | 0.643397 | 3.1:-40543628 | MS.gene064353:intron |
| TCAGTTGGAGATGGAAGATG+GGG | 0.647712 | 3.1:-40543504 | MS.gene064353:intron |
| TTACTGTGATCGTCAGTCTG+TGG | 0.670146 | 3.1:-40543694 | MS.gene064353:CDS |
| TGCAGCTGCTCCCAACACTG+AGG | 0.716752 | 3.1:-40545583 | MS.gene064353:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGAAATTTTCAATTTTTA+GGG | - | chr3.1:40543585-40543604 | MS.gene064353:intron | 10.0% |
| !!! | TTTTGAAATTTTCAATTTTT+AGG | - | chr3.1:40543584-40543603 | MS.gene064353:intron | 10.0% |
| !! | AAGCTACAATATAAAATTTA+AGG | + | chr3.1:40544948-40544967 | None:intergenic | 15.0% |
| !! | TATAGAGTATAAAATGAATT+TGG | - | chr3.1:40544027-40544046 | MS.gene064353:intron | 15.0% |
| !!! | TTTTTTTTTTTTTGGATTCA+TGG | - | chr3.1:40543765-40543784 | MS.gene064353:intron | 15.0% |
| !! | AAAAAATAATTAGAGATGTG+GGG | + | chr3.1:40544815-40544834 | None:intergenic | 20.0% |
| !! | AATAAATCAAGTGTGAAAAA+AGG | - | chr3.1:40544227-40544246 | MS.gene064353:intron | 20.0% |
| !! | AGAAAAAATAATTAGAGATG+TGG | + | chr3.1:40544817-40544836 | None:intergenic | 20.0% |
| !! | AGAGATATAATTGATCTAAA+AGG | + | chr3.1:40544998-40545017 | None:intergenic | 20.0% |
| !! | GAAAAAATAATTAGAGATGT+GGG | + | chr3.1:40544816-40544835 | None:intergenic | 20.0% |
| !! | TATATCTCTATACTCAAAAT+TGG | - | chr3.1:40545009-40545028 | MS.gene064353:intron | 20.0% |
| !!! | AATGTGTTTCTTTTTAATGT+CGG | - | chr3.1:40544855-40544874 | MS.gene064353:intron | 20.0% |
| !!! | ATATTTTCTTACTATGCTTT+AGG | - | chr3.1:40543822-40543841 | MS.gene064353:intron | 20.0% |
| !!! | TATCTTTTCATGTTTTCATT+AGG | - | chr3.1:40544484-40544503 | MS.gene064353:intron | 20.0% |
| !!! | TCATTTTATACTCTATAAGT+TGG | + | chr3.1:40544024-40544043 | None:intergenic | 20.0% |
| !!! | TCTTTTTTAATAATGTACGT+TGG | - | chr3.1:40544264-40544283 | MS.gene064353:intron | 20.0% |
| !!! | TGGTTATCTAAATTTTATAG+TGG | - | chr3.1:40544611-40544630 | MS.gene064353:intron | 20.0% |
| !!! | TTATATCTTTGTATCTGTTT+TGG | - | chr3.1:40544591-40544610 | MS.gene064353:intron | 20.0% |
| !!! | TTTTTGTTTCTATTGTTTGA+TGG | - | chr3.1:40544968-40544987 | MS.gene064353:intron | 20.0% |
| ! | ACTTCAAAAAACTATGTTAG+TGG | - | chr3.1:40544345-40544364 | MS.gene064353:intron | 25.0% |
| ! | AGATTATGAACACACAAATA+AGG | + | chr3.1:40543877-40543896 | None:intergenic | 25.0% |
| ! | ATAGAAATTAATTCCCTCTT+TGG | + | chr3.1:40544132-40544151 | None:intergenic | 25.0% |
| ! | CTATGAATTATTGTTCATTC+GGG | - | chr3.1:40544405-40544424 | MS.gene064353:intron | 25.0% |
| ! | GATTATGAACACACAAATAA+GGG | + | chr3.1:40543876-40543895 | None:intergenic | 25.0% |
| ! | GCTATGAATTATTGTTCATT+CGG | - | chr3.1:40544404-40544423 | MS.gene064353:intron | 25.0% |
| ! | TCCACAAAGTTTAAATCAAA+CGG | + | chr3.1:40543614-40543633 | None:intergenic | 25.0% |
| ! | TTGATTTAAACTTTGTGGAT+CGG | - | chr3.1:40543615-40543634 | MS.gene064353:intron | 25.0% |
| ! | TTGGAATTATATGCTAATCT+TGG | - | chr3.1:40545253-40545272 | MS.gene064353:intron | 25.0% |
| !! | AAATTTTATAGTGGCACTAT+TGG | - | chr3.1:40544620-40544639 | MS.gene064353:intron | 25.0% |
| !! | AATAAGATCTTTTACCAAAG+AGG | - | chr3.1:40544115-40544134 | MS.gene064353:intron | 25.0% |
| !! | ATAAGATCTTTTACCAAAGA+GGG | - | chr3.1:40544116-40544135 | MS.gene064353:intron | 25.0% |
| !! | GTTTTCATTAGGATATCTTT+TGG | - | chr3.1:40544495-40544514 | MS.gene064353:intron | 25.0% |
| !! | TATTGTTTGTTGAAGCATTA+GGG | - | chr3.1:40543698-40543717 | MS.gene064353:CDS | 25.0% |
| !! | TATTTTCATGCCATAAAACA+TGG | + | chr3.1:40545518-40545537 | None:intergenic | 25.0% |
| !! | TTATTGTTTGTTGAAGCATT+AGG | - | chr3.1:40543697-40543716 | MS.gene064353:CDS | 25.0% |
| !!! | AAAATATGTCTTGTTTCAGT+TGG | - | chr3.1:40545532-40545551 | MS.gene064353:CDS | 25.0% |
| !!! | CTATGTTAGTGGTTATTTTT+TGG | - | chr3.1:40544356-40544375 | MS.gene064353:intron | 25.0% |
| !!! | TTTTCTAAAGAGTTTTACTC+TGG | - | chr3.1:40545052-40545071 | MS.gene064353:intron | 25.0% |
| !!! | TTTTGATTTGATCGTTTGAT+AGG | - | chr3.1:40543730-40543749 | MS.gene064353:CDS | 25.0% |
| AAAAGTGGAACCAAAAGATT+TGG | + | chr3.1:40544437-40544456 | None:intergenic | 30.0% | |
| AAATCAAGTGTGAAAAAAGG+AGG | - | chr3.1:40544230-40544249 | MS.gene064353:intron | 30.0% | |
| ACTGTTGTAAATTGGTTACA+TGG | - | chr3.1:40545184-40545203 | MS.gene064353:intron | 30.0% | |
| CAATATCAATTGGAGAGAAT+GGG | - | chr3.1:40544743-40544762 | MS.gene064353:intron | 30.0% | |
| CTCGATAATAACACTTTCAA+TGG | + | chr3.1:40545093-40545112 | None:intergenic | 30.0% | |
| GGATACATGAAACTAAACAT+TGG | - | chr3.1:40545234-40545253 | MS.gene064353:intron | 30.0% | |
| TCTTGGTTACTATCGTAAAT+TGG | - | chr3.1:40545213-40545232 | MS.gene064353:intron | 30.0% | |
| TCTTGGTTACTGTTGTAAAT+TGG | - | chr3.1:40545176-40545195 | MS.gene064353:intron | 30.0% | |
| TGATATGGAAACATTAGGTT+AGG | - | chr3.1:40544460-40544479 | MS.gene064353:intron | 30.0% | |
| TGATGTTTAATTAGAGAGCA+GGG | - | chr3.1:40544663-40544682 | MS.gene064353:intron | 30.0% | |
| TGGTTTCTTCAGAAAAACAT+AGG | - | chr3.1:40544640-40544659 | MS.gene064353:intron | 30.0% | |
| ! | AGTTTTCATATCATCAGTCT+TGG | - | chr3.1:40545159-40545178 | MS.gene064353:intron | 30.0% |
| ! | CAGTTGTGTTTCATCTTTTA+TGG | - | chr3.1:40544766-40544785 | MS.gene064353:intron | 30.0% |
| ! | TATAAGTTTGGCTTACAAAG+AGG | - | chr3.1:40544920-40544939 | MS.gene064353:intron | 30.0% |
| ! | TCCGTTTGATTTAAACTTTG+TGG | - | chr3.1:40543610-40543629 | MS.gene064353:intron | 30.0% |
| ! | TGGGATATATGTATTGCTTT+TGG | - | chr3.1:40544316-40544335 | MS.gene064353:intron | 30.0% |
| ! | TGTTTCTTCCTTCGATTTTA+GGG | - | chr3.1:40543554-40543573 | MS.gene064353:intron | 30.0% |
| !! | TCTTACTATGCTTTAGGATT+TGG | - | chr3.1:40543828-40543847 | MS.gene064353:intron | 30.0% |
| !! | TTGTTTCTTCCTTCGATTTT+AGG | - | chr3.1:40543553-40543572 | MS.gene064353:intron | 30.0% |
| !!! | AAATCTTTTGGTTCCACTTT+TGG | - | chr3.1:40544436-40544455 | MS.gene064353:intron | 30.0% |
| !!! | AATCTTTTGGTTCCACTTTT+GGG | - | chr3.1:40544437-40544456 | MS.gene064353:intron | 30.0% |
| !!! | GATTTTTAACTTCGGTTACT+TGG | - | chr3.1:40543639-40543658 | MS.gene064353:CDS | 30.0% |
| AAACGAAACCCTAAAATCGA+AGG | + | chr3.1:40543565-40543584 | None:intergenic | 35.0% | |
| AAACGTGCAAACATGAAATG+TGG | + | chr3.1:40544523-40544542 | None:intergenic | 35.0% | |
| ATACAGATTGCAGACATGAA+GGG | + | chr3.1:40544903-40544922 | None:intergenic | 35.0% | |
| ATATTGCAAGGGAACACTTT+CGG | + | chr3.1:40544729-40544748 | None:intergenic | 35.0% | |
| CTCTCCAATTGATATTGCAA+GGG | + | chr3.1:40544740-40544759 | None:intergenic | 35.0% | |
| GCAATATCAATTGGAGAGAA+TGG | - | chr3.1:40544742-40544761 | MS.gene064353:intron | 35.0% | |
| GTCTGCAATCTGTATAAGTT+TGG | - | chr3.1:40544908-40544927 | MS.gene064353:intron | 35.0% | |
| GTGATGTTTAATTAGAGAGC+AGG | - | chr3.1:40544662-40544681 | MS.gene064353:intron | 35.0% | |
| TATACAGATTGCAGACATGA+AGG | + | chr3.1:40544904-40544923 | None:intergenic | 35.0% | |
| TCTCTCCAATTGATATTGCA+AGG | + | chr3.1:40544741-40544760 | None:intergenic | 35.0% | |
| TGTTCCCTTGCAATATCAAT+TGG | - | chr3.1:40544733-40544752 | MS.gene064353:intron | 35.0% | |
| TTGGACATTTCAAAGTGAAC+TGG | - | chr3.1:40545028-40545047 | MS.gene064353:intron | 35.0% | |
| TTGGGTGATATGGAAACATT+AGG | - | chr3.1:40544455-40544474 | MS.gene064353:intron | 35.0% | |
| ! | AAAGAGTTTTACTCTGGTGT+TGG | - | chr3.1:40545058-40545077 | MS.gene064353:intron | 35.0% |
| ! | ATGCTAATCTTGGTCTGTTT+TGG | - | chr3.1:40545263-40545282 | MS.gene064353:intron | 35.0% |
| ! | TGGTATCTTGTTGATGAGTT+GGG | - | chr3.1:40544297-40544316 | MS.gene064353:intron | 35.0% |
| ! | TGTCTGACATCCATGTTTTA+TGG | - | chr3.1:40545505-40545524 | MS.gene064353:intron | 35.0% |
| !! | ATGGTAACGAAGTGTTTTTC+AGG | - | chr3.1:40545296-40545315 | MS.gene064353:intron | 35.0% |
| !! | TTTGAGATTGTTTTCGTCGT+TGG | + | chr3.1:40544185-40544204 | None:intergenic | 35.0% |
| !! | TTTTACTCTGGTGTTGGATT+TGG | - | chr3.1:40545064-40545083 | MS.gene064353:intron | 35.0% |
| !!! | AAGTGTTTTTCAGGATCAAG+AGG | - | chr3.1:40545305-40545324 | MS.gene064353:intron | 35.0% |
| !!! | GGATCGGTGATTTTTAACTT+CGG | - | chr3.1:40543631-40543650 | MS.gene064353:CDS | 35.0% |
| GTCATATTCACGAACCTCAT+CGG | + | chr3.1:40545440-40545459 | None:intergenic | 40.0% | |
| GTTTCCATATCACCCAAAAG+TGG | + | chr3.1:40544452-40544471 | None:intergenic | 40.0% | |
| TCATATTCACGAACCTCATC+GGG | + | chr3.1:40545439-40545458 | None:intergenic | 40.0% | |
| TGTACGTTGGAATGCTTATG+TGG | - | chr3.1:40544277-40544296 | MS.gene064353:intron | 40.0% | |
| TTCAGTTGGAGATGGAAGAT+GGG | - | chr3.1:40545546-40545565 | MS.gene064353:CDS | 40.0% | |
| TTCTTGTCTTCCTCAGTGTT+GGG | + | chr3.1:40543481-40543500 | None:intergenic | 40.0% | |
| TTTCAGTTGGAGATGGAAGA+TGG | - | chr3.1:40545545-40545564 | MS.gene064353:CDS | 40.0% | |
| ! | GTGGTATCTTGTTGATGAGT+TGG | - | chr3.1:40544296-40544315 | MS.gene064353:intron | 40.0% |
| ! | TGGTTACATGGAACTAGTCT+TGG | - | chr3.1:40545196-40545215 | MS.gene064353:intron | 40.0% |
| !! | CCATCGCTTTTCTCTTTGAT+GGG | - | chr3.1:40545389-40545408 | MS.gene064353:intron | 40.0% |
| !! | CTGTTTTGGATGTTGTAGGA+TGG | - | chr3.1:40545277-40545296 | MS.gene064353:intron | 40.0% |
| !! | TCCATCGCTTTTCTCTTTGA+TGG | - | chr3.1:40545388-40545407 | MS.gene064353:intron | 40.0% |
| !! | TGGTCTGTTTTGGATGTTGT+AGG | - | chr3.1:40545273-40545292 | MS.gene064353:intron | 40.0% |
| !! | TGTCTTGTTTCAGTTGGAGA+TGG | - | chr3.1:40545538-40545557 | MS.gene064353:CDS | 40.0% |
| AGAGCAGGGATAGTGTGTAT+CGG | - | chr3.1:40544677-40544696 | MS.gene064353:intron | 45.0% | |
| CACATCAACCTCAAGGTCAA+GGG | - | chr3.1:40543520-40543539 | MS.gene064353:intron | 45.0% | |
| CCCATCAAAGAGAAAAGCGA+TGG | + | chr3.1:40545392-40545411 | None:intergenic | 45.0% | |
| CTTCTTGTCTTCCTCAGTGT+TGG | + | chr3.1:40543482-40543501 | None:intergenic | 45.0% | |
| TCACATCAACCTCAAGGTCA+AGG | - | chr3.1:40543519-40543538 | MS.gene064353:intron | 45.0% | |
| TCAGTTGGAGATGGAAGATG+GGG | - | chr3.1:40545547-40545566 | MS.gene064353:CDS | 45.0% | |
| TGGTTTCATACACTGTCGTG+TGG | + | chr3.1:40544004-40544023 | None:intergenic | 45.0% | |
| TTACTGTGATCGTCAGTCTG+TGG | - | chr3.1:40545357-40545376 | MS.gene064353:intron | 45.0% | |
| ! | CGGGTGATAGCCAAATCTTT+TGG | - | chr3.1:40544424-40544443 | MS.gene064353:intron | 45.0% |
| ! | TACTCTGGTGTTGGATTTGG+TGG | - | chr3.1:40545067-40545086 | MS.gene064353:intron | 45.0% |
| !! | GGTTCCACTTTTGGGTGATA+TGG | - | chr3.1:40544445-40544464 | MS.gene064353:intron | 45.0% |
| !! | AATTATTATCAAAATATATT+TGG | + | chr3.1:40545486-40545505 | None:intergenic | 5.0% |
| !!! | ATTAAAGTTTTTTTTTTTTT+TGG | - | chr3.1:40543757-40543776 | MS.gene064353:CDS | 5.0% |
| ACCTCCTGTCTGATGAAGCA+TGG | + | chr3.1:40545585-40545604 | None:intergenic | 50.0% | |
| GATGCCATGCTTCATCAGAC+AGG | - | chr3.1:40545578-40545597 | MS.gene064353:CDS | 50.0% | |
| TGGTGCTCACATCAACCTCA+AGG | - | chr3.1:40543513-40543532 | MS.gene064353:intron | 50.0% | |
| ATGTGAGCACCACCTGCTTC+GGG | + | chr3.1:40543505-40543524 | None:intergenic | 55.0% | |
| CAACCTCAAGGTCAAGGGTC+AGG | - | chr3.1:40543525-40543544 | MS.gene064353:intron | 55.0% | |
| GAACCTGACCCTTGACCTTG+AGG | + | chr3.1:40543531-40543550 | None:intergenic | 55.0% | |
| GAAGACAAGAAGCCCGAAGC+AGG | - | chr3.1:40543490-40543509 | MS.gene064353:CDS | 55.0% | |
| GATGTGAGCACCACCTGCTT+CGG | + | chr3.1:40543506-40543525 | None:intergenic | 55.0% | |
| GCCATGCTTCATCAGACAGG+AGG | - | chr3.1:40545581-40545600 | MS.gene064353:CDS | 55.0% | |
| CATCGGGAGTCTGCTCAGCA+CGG | + | chr3.1:40545423-40545442 | None:intergenic | 60.0% | |
| GACAAGAAGCCCGAAGCAGG+TGG | - | chr3.1:40543493-40543512 | MS.gene064353:CDS | 60.0% | |
| TGCAGCTGCTCCCAACACTG+AGG | - | chr3.1:40543468-40543487 | MS.gene064353:CDS | 60.0% | |
| TGCTGAGCAGACTCCCGATG+AGG | - | chr3.1:40545423-40545442 | MS.gene064353:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 40543457 | 40545616 | 40543457 | ID=MS.gene064353 |
| chr3.1 | mRNA | 40543457 | 40545616 | 40543457 | ID=MS.gene064353.t1;Parent=MS.gene064353 |
| chr3.1 | exon | 40545527 | 40545616 | 40545527 | ID=MS.gene064353.t1.exon1;Parent=MS.gene064353.t1 |
| chr3.1 | CDS | 40545527 | 40545616 | 40545527 | ID=cds.MS.gene064353.t1;Parent=MS.gene064353.t1 |
| chr3.1 | exon | 40543629 | 40543778 | 40543629 | ID=MS.gene064353.t1.exon2;Parent=MS.gene064353.t1 |
| chr3.1 | CDS | 40543629 | 40543778 | 40543629 | ID=cds.MS.gene064353.t1;Parent=MS.gene064353.t1 |
| chr3.1 | exon | 40543457 | 40543522 | 40543457 | ID=MS.gene064353.t1.exon3;Parent=MS.gene064353.t1 |
| chr3.1 | CDS | 40543457 | 40543522 | 40543457 | ID=cds.MS.gene064353.t1;Parent=MS.gene064353.t1 |
| Gene Sequence |
| Protein sequence |
