Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99872.t1 | XP_013459866.1 | 100 | 101 | 0 | 0 | 1 | 101 | 1 | 101 | 3.00E-49 | 204.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99872.t1 | P55852 | 92.3 | 91 | 7 | 0 | 9 | 99 | 4 | 94 | 1.4e-42 | 173.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99872.t1 | I3SU86 | 100.0 | 101 | 0 | 0 | 1 | 101 | 1 | 101 | 2.1e-49 | 204.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99872.t1 | MTR_3g053540 | 100.000 | 101 | 0 | 0 | 1 | 101 | 1 | 101 | 1.20e-72 | 211 |
| MS.gene99872.t1 | MTR_3g053520 | 98.020 | 101 | 2 | 0 | 1 | 101 | 1 | 101 | 2.23e-71 | 207 |
| MS.gene99872.t1 | MTR_8g010480 | 59.459 | 74 | 30 | 0 | 21 | 94 | 165 | 238 | 2.35e-27 | 102 |
| MS.gene99872.t1 | MTR_8g010480 | 61.972 | 71 | 27 | 0 | 23 | 93 | 244 | 314 | 1.33e-22 | 89.4 |
| MS.gene99872.t1 | MTR_8g010480 | 55.128 | 78 | 31 | 1 | 20 | 93 | 83 | 160 | 9.56e-22 | 87.0 |
| MS.gene99872.t1 | MTR_8g010480 | 43.678 | 87 | 46 | 2 | 15 | 100 | 2 | 86 | 5.60e-16 | 71.6 |
| MS.gene99872.t1 | MTR_8g010490 | 46.237 | 93 | 49 | 1 | 3 | 95 | 10 | 101 | 1.60e-26 | 97.1 |
| MS.gene99872.t1 | MTR_8g010490 | 52.632 | 76 | 36 | 0 | 23 | 98 | 108 | 183 | 7.15e-22 | 85.1 |
| MS.gene99872.t1 | MTR_8g085340 | 38.710 | 93 | 56 | 1 | 10 | 101 | 14 | 106 | 2.91e-18 | 74.3 |
| MS.gene99872.t1 | MTR_8g085320 | 33.333 | 99 | 65 | 1 | 1 | 98 | 1 | 99 | 8.80e-18 | 72.4 |
| MS.gene99872.t1 | MTR_3g053640 | 50.000 | 70 | 35 | 0 | 20 | 89 | 82 | 151 | 1.19e-15 | 70.9 |
| MS.gene99872.t1 | MTR_3g053640 | 51.562 | 64 | 31 | 0 | 29 | 92 | 15 | 78 | 1.71e-15 | 70.5 |
| MS.gene99872.t1 | MTR_0007s0030 | 64.103 | 39 | 14 | 0 | 48 | 86 | 1 | 39 | 1.53e-14 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99872.t1 | AT4G26840 | 90.000 | 90 | 9 | 0 | 7 | 96 | 2 | 91 | 3.86e-57 | 171 |
| MS.gene99872.t1 | AT5G55160 | 90.426 | 94 | 6 | 2 | 5 | 98 | 2 | 92 | 4.53e-57 | 171 |
| MS.gene99872.t1 | AT5G55160 | 79.439 | 107 | 6 | 3 | 5 | 98 | 2 | 105 | 1.64e-53 | 163 |
| MS.gene99872.t1 | AT5G55856 | 49.438 | 89 | 45 | 0 | 10 | 98 | 2 | 90 | 1.38e-26 | 94.4 |
| MS.gene99872.t1 | AT5G55170 | 51.685 | 89 | 41 | 1 | 12 | 98 | 5 | 93 | 1.03e-25 | 92.8 |
| MS.gene99872.t1 | AT5G55855 | 47.674 | 86 | 45 | 0 | 13 | 98 | 5 | 90 | 2.13e-24 | 89.0 |
| MS.gene99872.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 9.67e-23 | 85.1 |
| MS.gene99872.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 9.67e-23 | 85.1 |
| MS.gene99872.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 9.67e-23 | 85.1 |
| MS.gene99872.t1 | AT5G55170 | 48.315 | 89 | 40 | 2 | 12 | 98 | 5 | 89 | 2.83e-21 | 81.3 |
| MS.gene99872.t1 | AT2G32765 | 37.778 | 90 | 55 | 1 | 10 | 98 | 14 | 103 | 1.98e-20 | 79.0 |
| MS.gene99872.t1 | AT5G55170 | 49.296 | 71 | 34 | 1 | 12 | 80 | 5 | 75 | 7.39e-18 | 72.4 |
| MS.gene99872.t1 | AT5G48700 | 42.222 | 90 | 50 | 2 | 11 | 98 | 19 | 108 | 9.23e-18 | 72.4 |
| MS.gene99872.t1 | AT5G48710 | 39.437 | 71 | 42 | 1 | 12 | 81 | 17 | 87 | 5.73e-14 | 62.4 |
Find 31 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGGGAATGAAGTGTTCTTT+AGG | 0.336414 | 3.1:+39633889 | MS.gene99872:CDS |
| GATGTGAGCACCACCTGCTT+CGG | 0.338312 | 3.1:-39632304 | None:intergenic |
| TTCTTGTCTTCCTCGGTGTT+GGG | 0.340524 | 3.1:-39632279 | None:intergenic |
| ATGTGAGCACCACCTGCTTC+GGG | 0.344186 | 3.1:-39632303 | None:intergenic |
| CTTCTTGTCTTCCTCGGTGT+TGG | 0.351501 | 3.1:-39632280 | None:intergenic |
| TCGTTAACACAAACCTCATC+TGG | 0.369553 | 3.1:-39634029 | None:intergenic |
| GAACCTGGCCCTTGACTTTG+AGG | 0.387240 | 3.1:-39632329 | None:intergenic |
| TTCGGGCTTCTTGTCTTCCT+CGG | 0.415650 | 3.1:-39632286 | None:intergenic |
| GAAGACAAGAAGCCCGAAGC+AGG | 0.445397 | 3.1:+39632291 | MS.gene99872:CDS |
| CGGAAACTGAAGATGTCGTC+AGG | 0.500483 | 3.1:+39632246 | None:intergenic |
| GTCTTCCTCGGTGTTGGGAG+CGG | 0.500639 | 3.1:-39632274 | None:intergenic |
| TTGCAGCTGGAAATGGAAGA+TGG | 0.502872 | 3.1:+39634132 | MS.gene99872:intron |
| CGTTAACACAAACCTCATCT+GGG | 0.533016 | 3.1:-39634028 | None:intergenic |
| GACGCCATGCTTCATCAGAC+AGG | 0.558207 | 3.1:+39634165 | MS.gene99872:CDS |
| AAGTGTTCTTTAGGATCAAG+AGG | 0.569229 | 3.1:+39633898 | MS.gene99872:CDS |
| TGCAGCTGGAAATGGAAGAT+GGG | 0.572615 | 3.1:+39634133 | MS.gene99872:intron |
| CAACCTCAAAGTCAAGGGCC+AGG | 0.579447 | 3.1:+39632326 | MS.gene99872:CDS |
| ACCTCCTGTCTGATGAAGCA+TGG | 0.580486 | 3.1:-39634169 | None:intergenic |
| CCCATCAAATAGAAAAGCAA+TGG | 0.583133 | 3.1:-39633982 | None:intergenic |
| TCACATCAACCTCAAAGTCA+AGG | 0.600994 | 3.1:+39632320 | MS.gene99872:CDS |
| TGCGGAGCAGACCCCAGATG+AGG | 0.610800 | 3.1:+39634016 | MS.gene99872:CDS |
| CACATCAACCTCAAAGTCAA+GGG | 0.612548 | 3.1:+39632321 | MS.gene99872:CDS |
| CATCTGGGGTCTGCTCCGCA+CGG | 0.618051 | 3.1:-39634013 | None:intergenic |
| GACAAGAAGCCCGAAGCAGG+TGG | 0.627526 | 3.1:+39632294 | MS.gene99872:CDS |
| GCCATGCTTCATCAGACAGG+AGG | 0.629302 | 3.1:+39634168 | MS.gene99872:CDS |
| TTACTGTGATCGTCAGTCTG+TGG | 0.670146 | 3.1:+39633950 | MS.gene99872:CDS |
| CTGGGGTCTGCTCCGCACGG+AGG | 0.676566 | 3.1:-39634010 | None:intergenic |
| GCAGCTGGAAATGGAAGATG+GGG | 0.677394 | 3.1:+39634134 | MS.gene99872:intron |
| TGATGGGCGTCGCCTCCGTG+CGG | 0.705266 | 3.1:+39633998 | MS.gene99872:CDS |
| GTTAACACAAACCTCATCTG+GGG | 0.716440 | 3.1:-39634027 | None:intergenic |
| TGCAGCCGCTCCCAACACCG+AGG | 0.722402 | 3.1:+39632269 | MS.gene99872:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAAACATGTTTAAATTAA+CGG | + | chr3.1:39633369-39633388 | MS.gene99872:intron | 10.0% |
| !!! | TTTTAAGAATAATTACATTA+TGG | + | chr3.1:39633008-39633027 | MS.gene99872:intron | 10.0% |
| !!! | TATTTTATTGAATTTGTGTT+AGG | + | chr3.1:39632714-39632733 | MS.gene99872:intron | 15.0% |
| !!! | TTTTTACATGTTTAGATTAA+CGG | + | chr3.1:39632556-39632575 | MS.gene99872:intron | 15.0% |
| !! | AACAAAAAATGAGATAACAT+AGG | - | chr3.1:39633664-39633683 | None:intergenic | 20.0% |
| !! | AGTTTGTATACATTATAAGA+TGG | + | chr3.1:39633085-39633104 | MS.gene99872:intron | 20.0% |
| !! | ATCAAATTAACCATAAATCT+AGG | - | chr3.1:39632989-39633008 | None:intergenic | 20.0% |
| !! | CCTTACAAATTGTATATAAA+CGG | - | chr3.1:39632740-39632759 | None:intergenic | 20.0% |
| !!! | AGTTATAACATTTTCAGAAA+TGG | + | chr3.1:39633731-39633750 | MS.gene99872:intron | 20.0% |
| !!! | ATTCGATCGTTAATTTTTTA+GGG | + | chr3.1:39632413-39632432 | MS.gene99872:intron | 20.0% |
| !!! | ATTTTAATATGTTCTAGGAT+GGG | + | chr3.1:39633871-39633890 | MS.gene99872:intron | 20.0% |
| !!! | GTATATGATTTGTTGAAAAT+AGG | + | chr3.1:39633326-39633345 | MS.gene99872:intron | 20.0% |
| !!! | TAGATTCAAGGTATTAATAA+CGG | + | chr3.1:39632817-39632836 | MS.gene99872:intron | 20.0% |
| !!! | TATTCGATCGTTAATTTTTT+AGG | + | chr3.1:39632412-39632431 | MS.gene99872:intron | 20.0% |
| !!! | TTTGGATTTTAATATGTTCT+AGG | + | chr3.1:39633866-39633885 | MS.gene99872:intron | 20.0% |
| !!! | TTTGTAAGGAATTTTTGTTT+TGG | + | chr3.1:39632751-39632770 | MS.gene99872:intron | 20.0% |
| !!! | TTTTTAGGAAGGAAAAAAAA+GGG | - | chr3.1:39632958-39632977 | None:intergenic | 20.0% |
| ! | AAAATTAGCATACATAACTC+TGG | - | chr3.1:39633848-39633867 | None:intergenic | 25.0% |
| ! | AACATTGAAACCTAGATTTA+TGG | + | chr3.1:39632976-39632995 | MS.gene99872:intron | 25.0% |
| ! | CAAATATTGATGTAACGTTA+TGG | - | chr3.1:39633174-39633193 | None:intergenic | 25.0% |
| ! | CCGTTTATATACAATTTGTA+AGG | + | chr3.1:39632737-39632756 | MS.gene99872:intron | 25.0% |
| ! | TAGTTCTTATCAAAATCACT+TGG | + | chr3.1:39632627-39632646 | MS.gene99872:intron | 25.0% |
| !! | AAAATATATTTTGTTGCAGC+TGG | + | chr3.1:39634119-39634138 | MS.gene99872:intron | 25.0% |
| !! | AGATTCAAGGTATTAATAAC+GGG | + | chr3.1:39632818-39632837 | MS.gene99872:intron | 25.0% |
| !! | ATCTAGGTTTCAATGTTTTT+AGG | - | chr3.1:39632973-39632992 | None:intergenic | 25.0% |
| !! | GAGTTATGTATGCTAATTTT+TGG | + | chr3.1:39633848-39633867 | MS.gene99872:intron | 25.0% |
| !!! | GATTTTAATATGTTCTAGGA+TGG | + | chr3.1:39633870-39633889 | MS.gene99872:intron | 25.0% |
| !!! | GTTTTTAGGAAGGAAAAAAA+AGG | - | chr3.1:39632959-39632978 | None:intergenic | 25.0% |
| !!! | TTTTAGGAAGGAAAAAAAAG+GGG | - | chr3.1:39632957-39632976 | None:intergenic | 25.0% |
| AAAAACACCATCAAGATGTT+TGG | - | chr3.1:39633499-39633518 | None:intergenic | 30.0% | |
| AACAAAAACCCTAAAATCGA+AGG | - | chr3.1:39632366-39632385 | None:intergenic | 30.0% | |
| AACAATCACAAACACAACAA+AGG | - | chr3.1:39632447-39632466 | None:intergenic | 30.0% | |
| AATCCAAACATAACTAAGAC+TGG | + | chr3.1:39632678-39632697 | MS.gene99872:intron | 30.0% | |
| ACGATATTGTTGAAGAACTA+GGG | + | chr3.1:39633288-39633307 | MS.gene99872:intron | 30.0% | |
| AGTCATAAAAACACGAATGT+TGG | - | chr3.1:39634098-39634117 | None:intergenic | 30.0% | |
| ATTCCAGTCTTAGTTATGTT+TGG | - | chr3.1:39632684-39632703 | None:intergenic | 30.0% | |
| GAATTGCTATGTTAGATTCA+AGG | + | chr3.1:39632805-39632824 | MS.gene99872:intron | 30.0% | |
| GATAACAGAAACCCAAAAAA+GGG | - | chr3.1:39633245-39633264 | None:intergenic | 30.0% | |
| GCGTTCATGTATAAACATAT+TGG | + | chr3.1:39633698-39633717 | MS.gene99872:intron | 30.0% | |
| GTATTGAATTTGTGTGTTAG+TGG | + | chr3.1:39633520-39633539 | MS.gene99872:intron | 30.0% | |
| TACGATATTGTTGAAGAACT+AGG | + | chr3.1:39633287-39633306 | MS.gene99872:intron | 30.0% | |
| TGATAACAGAAACCCAAAAA+AGG | - | chr3.1:39633246-39633265 | None:intergenic | 30.0% | |
| ! | GATTGTTTGTTGAAGAACTA+GGG | + | chr3.1:39632460-39632479 | MS.gene99872:intron | 30.0% |
| ! | TGATTGTTTGTTGAAGAACT+AGG | + | chr3.1:39632459-39632478 | MS.gene99872:intron | 30.0% |
| !! | CCATTGCTTTTCTATTTGAT+GGG | + | chr3.1:39633982-39634001 | MS.gene99872:CDS | 30.0% |
| !! | GTATTAATAACGGGTTTGTT+CGG | + | chr3.1:39632827-39632846 | MS.gene99872:intron | 30.0% |
| !!! | AGGTTTCAATGTTTTTAGGA+AGG | - | chr3.1:39632969-39632988 | None:intergenic | 30.0% |
| AAGGTTGTATTGTAAGCTTG+CGG | - | chr3.1:39632878-39632897 | None:intergenic | 35.0% | |
| AGTTATGTTTGGATTGACGA+TGG | - | chr3.1:39632673-39632692 | None:intergenic | 35.0% | |
| CATCAAGATGTTTGGATTGA+AGG | - | chr3.1:39633491-39633510 | None:intergenic | 35.0% | |
| CCCATCAAATAGAAAAGCAA+TGG | - | chr3.1:39633985-39634004 | None:intergenic | 35.0% | |
| CTGTTTACATACCATATGGT+AGG | + | chr3.1:39633544-39633563 | MS.gene99872:intron | 35.0% | |
| CTTCAATCCAAACATCTTGA+TGG | + | chr3.1:39633489-39633508 | MS.gene99872:intron | 35.0% | |
| GAACTAGGGTTAATATCACT+AGG | + | chr3.1:39633302-39633321 | MS.gene99872:intron | 35.0% | |
| GCAGTTCATATCAAATCACT+TGG | + | chr3.1:39633442-39633461 | MS.gene99872:intron | 35.0% | |
| GTTCTTCAACAATATCGTAC+AGG | - | chr3.1:39633286-39633305 | None:intergenic | 35.0% | |
| TATTTGCGAAATCCTTTACG+CGG | + | chr3.1:39633188-39633207 | MS.gene99872:intron | 35.0% | |
| TGGACTGTTTACATACCATA+TGG | + | chr3.1:39633540-39633559 | MS.gene99872:intron | 35.0% | |
| ! | AAAGTTCCACAGTGATTTTG+TGG | - | chr3.1:39632588-39632607 | None:intergenic | 35.0% |
| ! | ACCATATGGTAGGACTTTTT+GGG | + | chr3.1:39633554-39633573 | MS.gene99872:intron | 35.0% |
| ! | ATGGGAATGAAGTGTTCTTT+AGG | + | chr3.1:39633889-39633908 | MS.gene99872:CDS | 35.0% |
| ! | CTTGTTTAAGACCTTGGTTA+GGG | + | chr3.1:39633218-39633237 | MS.gene99872:intron | 35.0% |
| ! | TACCATATGGTAGGACTTTT+TGG | + | chr3.1:39633553-39633572 | MS.gene99872:intron | 35.0% |
| ! | TATTTTGTTGCAGCTGGAAA+TGG | + | chr3.1:39634125-39634144 | MS.gene99872:intron | 35.0% |
| ! | TGTCTCTTCCTTCGATTTTA+GGG | + | chr3.1:39632355-39632374 | MS.gene99872:intron | 35.0% |
| ! | TTGTCTCTTCCTTCGATTTT+AGG | + | chr3.1:39632354-39632373 | MS.gene99872:intron | 35.0% |
| ! | TTGTTCTCTATTGTTTTCCG+CGG | - | chr3.1:39632904-39632923 | None:intergenic | 35.0% |
| !! | AAGTGTTCTTTAGGATCAAG+AGG | + | chr3.1:39633898-39633917 | MS.gene99872:CDS | 35.0% |
| !! | GCCATTGCTTTTCTATTTGA+TGG | + | chr3.1:39633981-39634000 | MS.gene99872:CDS | 35.0% |
| !!! | TGGAAACGATGCATTGATTT+TGG | + | chr3.1:39632771-39632790 | MS.gene99872:intron | 35.0% |
| ACATAGGAGACAAGTTAGAG+TGG | - | chr3.1:39633648-39633667 | None:intergenic | 40.0% | |
| ACCAAGGTCTTAAACAAGGT+CGG | - | chr3.1:39633216-39633235 | None:intergenic | 40.0% | |
| ACCCAAAAAGTCCTACCATA+TGG | - | chr3.1:39633558-39633577 | None:intergenic | 40.0% | |
| CAAGATGTTTGGATTGAAGG+TGG | - | chr3.1:39633488-39633507 | None:intergenic | 40.0% | |
| CACATCAACCTCAAAGTCAA+GGG | + | chr3.1:39632321-39632340 | MS.gene99872:CDS | 40.0% | |
| CCTAACCAAGGTCTTAAACA+AGG | - | chr3.1:39633220-39633239 | None:intergenic | 40.0% | |
| CGTTAACACAAACCTCATCT+GGG | - | chr3.1:39634031-39634050 | None:intergenic | 40.0% | |
| GTTAACACAAACCTCATCTG+GGG | - | chr3.1:39634030-39634049 | None:intergenic | 40.0% | |
| GTTTGGATTGAAGGTGGAAT+TGG | - | chr3.1:39633482-39633501 | None:intergenic | 40.0% | |
| GTTTGGATTGACGATGGAAT+TGG | - | chr3.1:39632667-39632686 | None:intergenic | 40.0% | |
| TACAATACAACCTTAGACCG+CGG | + | chr3.1:39632884-39632903 | MS.gene99872:intron | 40.0% | |
| TCACATCAACCTCAAAGTCA+AGG | + | chr3.1:39632320-39632339 | MS.gene99872:CDS | 40.0% | |
| TCGTTAACACAAACCTCATC+TGG | - | chr3.1:39634032-39634051 | None:intergenic | 40.0% | |
| TGAGTTCCACAAAATCACTG+TGG | + | chr3.1:39632579-39632598 | MS.gene99872:intron | 40.0% | |
| TTGAAGAACTAGGGTTTCTC+TGG | + | chr3.1:39632469-39632488 | MS.gene99872:intron | 40.0% | |
| ! | CCTTGTTTAAGACCTTGGTT+AGG | + | chr3.1:39633217-39633236 | MS.gene99872:intron | 40.0% |
| ! | GGTGGCACTTTGATTTAATG+AGG | + | chr3.1:39633410-39633429 | MS.gene99872:intron | 40.0% |
| !!! | TTGGTTAGGGTCCCTTTTTT+GGG | + | chr3.1:39633231-39633250 | MS.gene99872:intron | 40.0% |
| AAGGAAGAGACAAACGAACC+TGG | - | chr3.1:39632347-39632366 | None:intergenic | 45.0% | |
| CAAAAAAGGGACCCTAACCA+AGG | - | chr3.1:39633232-39633251 | None:intergenic | 45.0% | |
| CAAGGTCTTAAACAAGGTCG+GGG | - | chr3.1:39633214-39633233 | None:intergenic | 45.0% | |
| CCAAGGTCTTAAACAAGGTC+GGG | - | chr3.1:39633215-39633234 | None:intergenic | 45.0% | |
| CGGTGAACTTGACAAACTCA+CGG | + | chr3.1:39633389-39633408 | MS.gene99872:intron | 45.0% | |
| TGAACTTGACAAACTCACGG+TGG | + | chr3.1:39633392-39633411 | MS.gene99872:intron | 45.0% | |
| TGCAGCTGGAAATGGAAGAT+GGG | + | chr3.1:39634133-39634152 | MS.gene99872:intron | 45.0% | |
| TTACTGTGATCGTCAGTCTG+TGG | + | chr3.1:39633950-39633969 | MS.gene99872:CDS | 45.0% | |
| TTGCAGCTGGAAATGGAAGA+TGG | + | chr3.1:39634132-39634151 | MS.gene99872:intron | 45.0% | |
| ! | CTATTGTTTTCCGCGGTCTA+AGG | - | chr3.1:39632897-39632916 | None:intergenic | 45.0% |
| !! | TTCTTGTCTTCCTCGGTGTT+GGG | - | chr3.1:39632282-39632301 | None:intergenic | 45.0% |
| !!! | CTTGGTTAGGGTCCCTTTTT+TGG | + | chr3.1:39633230-39633249 | MS.gene99872:intron | 45.0% |
| !!! | ATGAAAATTTTAAAAATAAA+AGG | + | chr3.1:39632529-39632548 | MS.gene99872:intron | 5.0% |
| ACCTCCTGTCTGATGAAGCA+TGG | - | chr3.1:39634172-39634191 | None:intergenic | 50.0% | |
| GCAGCTGGAAATGGAAGATG+GGG | + | chr3.1:39634134-39634153 | MS.gene99872:intron | 50.0% | |
| TTCGGGCTTCTTGTCTTCCT+CGG | - | chr3.1:39632289-39632308 | None:intergenic | 50.0% | |
| ! | CCCGACCTTGTTTAAGACCT+TGG | + | chr3.1:39633212-39633231 | MS.gene99872:intron | 50.0% |
| ! | CTTCTTGTCTTCCTCGGTGT+TGG | - | chr3.1:39632283-39632302 | None:intergenic | 50.0% |
| ! | GTTATGGATTGCAGTCGTCG+CGG | - | chr3.1:39633158-39633177 | None:intergenic | 50.0% |
| ATGTGAGCACCACCTGCTTC+GGG | - | chr3.1:39632306-39632325 | None:intergenic | 55.0% | |
| CAACCTCAAAGTCAAGGGCC+AGG | + | chr3.1:39632326-39632345 | MS.gene99872:CDS | 55.0% | |
| GAACCTGGCCCTTGACTTTG+AGG | - | chr3.1:39632332-39632351 | None:intergenic | 55.0% | |
| GAAGACAAGAAGCCCGAAGC+AGG | + | chr3.1:39632291-39632310 | MS.gene99872:CDS | 55.0% | |
| GACGCCATGCTTCATCAGAC+AGG | + | chr3.1:39634165-39634184 | MS.gene99872:CDS | 55.0% | |
| GATGTGAGCACCACCTGCTT+CGG | - | chr3.1:39632307-39632326 | None:intergenic | 55.0% | |
| GCCATGCTTCATCAGACAGG+AGG | + | chr3.1:39634168-39634187 | MS.gene99872:CDS | 55.0% | |
| GCTTGCGGCGTTCGTAATCA+CGG | - | chr3.1:39632863-39632882 | None:intergenic | 55.0% | |
| GACAAGAAGCCCGAAGCAGG+TGG | + | chr3.1:39632294-39632313 | MS.gene99872:CDS | 60.0% | |
| !! | GTCTTCCTCGGTGTTGGGAG+CGG | - | chr3.1:39632277-39632296 | None:intergenic | 60.0% |
| ACAAGGTCGGGGCCGCGTAA+AGG | - | chr3.1:39633203-39633222 | None:intergenic | 65.0% | |
| TGCGGAGCAGACCCCAGATG+AGG | + | chr3.1:39634016-39634035 | MS.gene99872:CDS | 65.0% | |
| ! | CATCTGGGGTCTGCTCCGCA+CGG | - | chr3.1:39634016-39634035 | None:intergenic | 65.0% |
| TGCAGCCGCTCCCAACACCG+AGG | + | chr3.1:39632269-39632288 | MS.gene99872:CDS | 70.0% | |
| ! | TGATGGGCGTCGCCTCCGTG+CGG | + | chr3.1:39633998-39634017 | MS.gene99872:CDS | 70.0% |
| CTGGGGTCTGCTCCGCACGG+AGG | - | chr3.1:39634013-39634032 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 39632258 | 39634203 | 39632258 | ID=MS.gene99872 |
| chr3.1 | mRNA | 39632258 | 39634203 | 39632258 | ID=MS.gene99872.t1;Parent=MS.gene99872 |
| chr3.1 | exon | 39632258 | 39632347 | 39632258 | ID=MS.gene99872.t1.exon1;Parent=MS.gene99872.t1 |
| chr3.1 | CDS | 39632258 | 39632347 | 39632258 | ID=cds.MS.gene99872.t1;Parent=MS.gene99872.t1 |
| chr3.1 | exon | 39633888 | 39634037 | 39633888 | ID=MS.gene99872.t1.exon2;Parent=MS.gene99872.t1 |
| chr3.1 | CDS | 39633888 | 39634037 | 39633888 | ID=cds.MS.gene99872.t1;Parent=MS.gene99872.t1 |
| chr3.1 | exon | 39634138 | 39634203 | 39634138 | ID=MS.gene99872.t1.exon3;Parent=MS.gene99872.t1 |
| chr3.1 | CDS | 39634138 | 39634203 | 39634138 | ID=cds.MS.gene99872.t1;Parent=MS.gene99872.t1 |
| Gene Sequence |
| Protein sequence |
