Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043643.t1 | XP_013459865.1 | 99 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 1.90E-48 | 201.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043643.t1 | P55852 | 93.4 | 91 | 6 | 0 | 9 | 99 | 4 | 94 | 1.0e-42 | 173.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043643.t1 | A0A072UWX4 | 99.0 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 1.4e-48 | 201.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043643.t1 | MTR_3g053540 | 98.020 | 101 | 2 | 0 | 1 | 101 | 1 | 101 | 2.36e-71 | 207 |
| MS.gene043643.t1 | MTR_3g053520 | 99.010 | 101 | 1 | 0 | 1 | 101 | 1 | 101 | 2.72e-71 | 207 |
| MS.gene043643.t1 | MTR_8g010480 | 60.811 | 74 | 29 | 0 | 21 | 94 | 165 | 238 | 1.05e-27 | 102 |
| MS.gene043643.t1 | MTR_8g010480 | 61.972 | 71 | 27 | 0 | 23 | 93 | 244 | 314 | 1.76e-22 | 89.0 |
| MS.gene043643.t1 | MTR_8g010480 | 55.128 | 78 | 31 | 1 | 20 | 93 | 83 | 160 | 1.36e-21 | 86.7 |
| MS.gene043643.t1 | MTR_8g010480 | 44.828 | 87 | 45 | 2 | 15 | 100 | 2 | 86 | 2.14e-16 | 72.8 |
| MS.gene043643.t1 | MTR_8g010490 | 46.237 | 93 | 49 | 1 | 3 | 95 | 10 | 101 | 5.73e-26 | 95.5 |
| MS.gene043643.t1 | MTR_8g010490 | 52.632 | 76 | 36 | 0 | 23 | 98 | 108 | 183 | 8.96e-22 | 84.7 |
| MS.gene043643.t1 | MTR_8g085340 | 39.130 | 92 | 55 | 1 | 11 | 101 | 15 | 106 | 2.94e-18 | 74.3 |
| MS.gene043643.t1 | MTR_8g085320 | 33.333 | 99 | 65 | 1 | 1 | 98 | 1 | 99 | 2.39e-17 | 71.2 |
| MS.gene043643.t1 | MTR_3g053640 | 50.000 | 70 | 35 | 0 | 20 | 89 | 82 | 151 | 9.67e-16 | 71.2 |
| MS.gene043643.t1 | MTR_3g053640 | 51.562 | 64 | 31 | 0 | 29 | 92 | 15 | 78 | 2.43e-15 | 70.1 |
| MS.gene043643.t1 | MTR_0007s0030 | 66.667 | 39 | 13 | 0 | 48 | 86 | 1 | 39 | 6.60e-15 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene043643.t1 | AT5G55160 | 91.489 | 94 | 5 | 2 | 5 | 98 | 2 | 92 | 1.51e-57 | 172 |
| MS.gene043643.t1 | AT4G26840 | 91.111 | 90 | 8 | 0 | 7 | 96 | 2 | 91 | 3.07e-57 | 172 |
| MS.gene043643.t1 | AT5G55160 | 80.374 | 107 | 5 | 3 | 5 | 98 | 2 | 105 | 5.31e-54 | 164 |
| MS.gene043643.t1 | AT5G55856 | 51.163 | 86 | 42 | 0 | 13 | 98 | 5 | 90 | 1.35e-26 | 94.4 |
| MS.gene043643.t1 | AT5G55170 | 50.562 | 89 | 42 | 1 | 12 | 98 | 5 | 93 | 3.24e-25 | 91.3 |
| MS.gene043643.t1 | AT5G55855 | 46.512 | 86 | 46 | 0 | 13 | 98 | 5 | 90 | 8.36e-24 | 87.4 |
| MS.gene043643.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 6.75e-23 | 85.5 |
| MS.gene043643.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 6.75e-23 | 85.5 |
| MS.gene043643.t1 | AT5G48710 | 46.591 | 88 | 46 | 1 | 12 | 98 | 17 | 104 | 6.75e-23 | 85.5 |
| MS.gene043643.t1 | AT5G55170 | 47.191 | 89 | 41 | 2 | 12 | 98 | 5 | 89 | 7.55e-21 | 80.1 |
| MS.gene043643.t1 | AT2G32765 | 43.421 | 76 | 43 | 0 | 23 | 98 | 28 | 103 | 8.55e-21 | 80.1 |
| MS.gene043643.t1 | AT5G48700 | 42.222 | 90 | 50 | 2 | 11 | 98 | 19 | 108 | 6.52e-18 | 72.8 |
| MS.gene043643.t1 | AT5G55170 | 47.887 | 71 | 35 | 1 | 12 | 80 | 5 | 75 | 2.50e-17 | 71.2 |
| MS.gene043643.t1 | AT5G48710 | 39.437 | 71 | 42 | 1 | 12 | 81 | 17 | 87 | 3.92e-14 | 62.8 |
Find 25 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTGAGCACCACCAGCTTC+TGG | 0.265597 | 3.2:-44870007 | None:intergenic |
| CTTCTTGTCTTCCTCAATGT+TGG | 0.304732 | 3.2:-44869984 | None:intergenic |
| TTCTTGTCTTCCTCAATGTT+GGG | 0.309100 | 3.2:-44869983 | None:intergenic |
| TTTCAGTTGGAGATGGAAGA+TGG | 0.431884 | 3.2:+44872041 | MS.gene043643:intron |
| TCATATTCACGAACCTCATC+GGG | 0.477321 | 3.2:-44871929 | None:intergenic |
| AAGATTCTCAAGATGTCGTC+AGG | 0.499126 | 3.2:+44869950 | None:intergenic |
| GTCATATTCACGAACCTCAT+CGG | 0.504722 | 3.2:-44871930 | None:intergenic |
| CAACCTCAAGGTCAAGGGTC+AGG | 0.516757 | 3.2:+44870030 | MS.gene043643:CDS |
| GAAGACAAGAAGCCAGAAGC+TGG | 0.521656 | 3.2:+44869995 | MS.gene043643:CDS |
| TGTCCTGTTTCAGTTGGAGA+TGG | 0.533449 | 3.2:+44872034 | MS.gene043643:intron |
| TTCAGTTGGAGATGGAAGAT+GGG | 0.544422 | 3.2:+44872042 | MS.gene043643:intron |
| GACGCCATGCTTCATCAGAC+AGG | 0.556706 | 3.2:+44872074 | MS.gene043643:CDS |
| GAACCTGACCCTTGACCTTG+AGG | 0.575367 | 3.2:-44870033 | None:intergenic |
| CCCATCAAAGAGAAAAGCAA+TGG | 0.577412 | 3.2:-44871882 | None:intergenic |
| ACCTCCTGTCTGATGAAGCA+TGG | 0.580486 | 3.2:-44872078 | None:intergenic |
| TCACATCAACCTCAAGGTCA+AGG | 0.582181 | 3.2:+44870024 | MS.gene043643:CDS |
| TGCAGCTGCTCCCAACATTG+AGG | 0.590382 | 3.2:+44869973 | MS.gene043643:CDS |
| CACATCAACCTCAAGGTCAA+GGG | 0.593562 | 3.2:+44870025 | MS.gene043643:CDS |
| TGGTGCTCACATCAACCTCA+AGG | 0.628444 | 3.2:+44870018 | MS.gene043643:CDS |
| GCCATGCTTCATCAGACAGG+AGG | 0.629302 | 3.2:+44872077 | MS.gene043643:CDS |
| CATCGGGAGTCTGCTCAGCA+CGG | 0.629541 | 3.2:-44871913 | None:intergenic |
| TGCTGAGCAGACTCCCGATG+AGG | 0.643397 | 3.2:+44871916 | MS.gene043643:CDS |
| TCAGTTGGAGATGGAAGATG+GGG | 0.647712 | 3.2:+44872043 | MS.gene043643:intron |
| TTACTGTGATCGTCAGTCTG+TGG | 0.670146 | 3.2:+44871850 | MS.gene043643:CDS |
| GACAAGAAGCCAGAAGCTGG+TGG | 0.675369 | 3.2:+44869998 | MS.gene043643:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGAAATTTTCAATTTTTA+GGG | + | chr3.2:44870090-44870109 | MS.gene043643:intron | 10.0% |
| !!! | TTTTGAAATTTTCAATTTTT+AGG | + | chr3.2:44870089-44870108 | MS.gene043643:intron | 10.0% |
| !! | AAGCTACAATATAAAATTTA+AGG | - | chr3.2:44871437-44871456 | None:intergenic | 15.0% |
| !! | ACATGATTTATTATGTAAAA+TGG | - | chr3.2:44870715-44870734 | None:intergenic | 15.0% |
| !! | TATAGAGTATAAAATGAATT+TGG | + | chr3.2:44870521-44870540 | MS.gene043643:intron | 15.0% |
| !!! | AATATTTTTTACTATGCTTT+AGG | + | chr3.2:44870315-44870334 | MS.gene043643:intron | 15.0% |
| !!! | TTTTTTTTTTTTTGGATTCA+TGG | + | chr3.2:44870259-44870278 | MS.gene043643:intron | 15.0% |
| !! | AAAAAATAATTAGAGATGTG+GGG | - | chr3.2:44871304-44871323 | None:intergenic | 20.0% |
| !! | AGAAAAAATAATTAGAGATG+TGG | - | chr3.2:44871306-44871325 | None:intergenic | 20.0% |
| !! | AGAGATATAATTGATCTAAA+AGG | - | chr3.2:44871488-44871507 | None:intergenic | 20.0% |
| !! | GAAAAAATAATTAGAGATGT+GGG | - | chr3.2:44871305-44871324 | None:intergenic | 20.0% |
| !! | TATATCTCTATACTCAAAAT+TGG | + | chr3.2:44871499-44871518 | MS.gene043643:intron | 20.0% |
| !! | TTGCAACTAATAATTGATAT+GGG | - | chr3.2:44870644-44870663 | None:intergenic | 20.0% |
| !! | TTTGCAACTAATAATTGATA+TGG | - | chr3.2:44870645-44870664 | None:intergenic | 20.0% |
| !!! | AATGTGTTTCTTTTTAATGT+CGG | + | chr3.2:44871344-44871363 | MS.gene043643:intron | 20.0% |
| !!! | TATCTTTTCATGTTTTCATT+AGG | + | chr3.2:44870975-44870994 | MS.gene043643:intron | 20.0% |
| !!! | TCATTTTATACTCTATAAGT+TGG | - | chr3.2:44870518-44870537 | None:intergenic | 20.0% |
| !!! | TCTTTTTTAATAATGAATGC+TGG | + | chr3.2:44870759-44870778 | MS.gene043643:intron | 20.0% |
| !!! | TGGTTATCTAAATTTTATAG+TGG | + | chr3.2:44871102-44871121 | MS.gene043643:intron | 20.0% |
| !!! | TTATATCTTTGTATCTGTTT+TGG | + | chr3.2:44871082-44871101 | MS.gene043643:intron | 20.0% |
| !!! | TTTTTGTTTCTATTGTTTGA+TGG | + | chr3.2:44871458-44871477 | MS.gene043643:intron | 20.0% |
| ! | ACTTCAAAAAACTATGTTAG+TGG | + | chr3.2:44870840-44870859 | MS.gene043643:intron | 25.0% |
| ! | AGATTATGAACACACAAATA+AGG | - | chr3.2:44870370-44870389 | None:intergenic | 25.0% |
| ! | CTATGAATTATTGTTCATTC+GGG | + | chr3.2:44870901-44870920 | MS.gene043643:intron | 25.0% |
| ! | GATTATGAACACACAAATAA+GGG | - | chr3.2:44870369-44870388 | None:intergenic | 25.0% |
| ! | GCTATGAATTATTGTTCATT+CGG | + | chr3.2:44870900-44870919 | MS.gene043643:intron | 25.0% |
| ! | TTGATTAAAACTTTGTGGAT+CGG | + | chr3.2:44870120-44870139 | MS.gene043643:intron | 25.0% |
| ! | TTGGAATTATATGCTAATCT+TGG | + | chr3.2:44871746-44871765 | MS.gene043643:intron | 25.0% |
| !! | AAATTTTATAGTGGCACTAT+TGG | + | chr3.2:44871111-44871130 | MS.gene043643:intron | 25.0% |
| !! | AATAAGATCTTTTACCAAAG+AGG | + | chr3.2:44870610-44870629 | MS.gene043643:intron | 25.0% |
| !! | ATAAGATCTTTTACCAAAGA+GGG | + | chr3.2:44870611-44870630 | MS.gene043643:intron | 25.0% |
| !! | GTTTTCATTAGGATATCTTT+TGG | + | chr3.2:44870986-44871005 | MS.gene043643:intron | 25.0% |
| !! | TATTGTTTGTTGAAGCATTA+GGG | + | chr3.2:44870190-44870209 | MS.gene043643:intron | 25.0% |
| !! | TTATTGTTTGTTGAAGCATT+AGG | + | chr3.2:44870189-44870208 | MS.gene043643:intron | 25.0% |
| !!! | TCCACAAAGTTTTAATCAAA+CGG | - | chr3.2:44870119-44870138 | None:intergenic | 25.0% |
| !!! | TTTTACTATGCTTTAGGATT+TGG | + | chr3.2:44870321-44870340 | MS.gene043643:intron | 25.0% |
| !!! | TTTTCTAAAGAGTTTTACTC+TGG | + | chr3.2:44871542-44871561 | MS.gene043643:intron | 25.0% |
| !!! | TTTTGATTTGATCGTTTGAT+AGG | + | chr3.2:44870222-44870241 | MS.gene043643:intron | 25.0% |
| AAAAGTGGAACCAAAAGATT+TGG | - | chr3.2:44870933-44870952 | None:intergenic | 30.0% | |
| AAATTTCAAAAACGAAACCC+TGG | - | chr3.2:44870080-44870099 | None:intergenic | 30.0% | |
| ACTGTTGTAAATTGGTTACA+TGG | + | chr3.2:44871674-44871693 | MS.gene043643:intron | 30.0% | |
| CAATATCAATTGGAGAGAAT+GGG | + | chr3.2:44871232-44871251 | MS.gene043643:intron | 30.0% | |
| CTCGATAATAACACTTTCAA+TGG | - | chr3.2:44871583-44871602 | None:intergenic | 30.0% | |
| GGATACATGAAACTAAACAT+TGG | + | chr3.2:44871727-44871746 | MS.gene043643:intron | 30.0% | |
| TAAATATGTCCTGTTTCAGT+TGG | + | chr3.2:44872028-44872047 | MS.gene043643:intron | 30.0% | |
| TAAATCATGTGTGAAGAAAG+AGG | + | chr3.2:44870725-44870744 | MS.gene043643:intron | 30.0% | |
| TCCGTTTGATTAAAACTTTG+TGG | + | chr3.2:44870115-44870134 | MS.gene043643:intron | 30.0% | |
| TCTTGGTTACTGTTGTAAAT+TGG | + | chr3.2:44871666-44871685 | MS.gene043643:intron | 30.0% | |
| TGATGTTTAATTAGAGAGCA+GGG | + | chr3.2:44871152-44871171 | MS.gene043643:intron | 30.0% | |
| ! | AGTTTTCATATCATCAGTCT+TGG | + | chr3.2:44871649-44871668 | MS.gene043643:intron | 30.0% |
| ! | ATTGGTTTCTTCAGAAAAAC+AGG | + | chr3.2:44871129-44871148 | MS.gene043643:intron | 30.0% |
| ! | CAGTTGTGTTTCATCTTTTA+TGG | + | chr3.2:44871255-44871274 | MS.gene043643:intron | 30.0% |
| ! | TATAAGTTTGGCTTACAAAG+AGG | + | chr3.2:44871409-44871428 | MS.gene043643:intron | 30.0% |
| ! | TGGGATATATGTATTGCTTT+TGG | + | chr3.2:44870811-44870830 | MS.gene043643:intron | 30.0% |
| ! | TTTGAGATTGATTTCGTCTT+TGG | - | chr3.2:44870681-44870700 | None:intergenic | 30.0% |
| !!! | AAATCTTTTGGTTCCACTTT+TGG | + | chr3.2:44870932-44870951 | MS.gene043643:intron | 30.0% |
| !!! | AATCTTTTGGTTCCACTTTT+GGG | + | chr3.2:44870933-44870952 | MS.gene043643:intron | 30.0% |
| !!! | GATTTTTAACTTCGGTTACT+TGG | + | chr3.2:44870144-44870163 | MS.gene043643:intron | 30.0% |
| AAACGTGCAAACATGAAAAG+TGG | - | chr3.2:44871014-44871033 | None:intergenic | 35.0% | |
| ATACAGATTGCAGACATGAA+GGG | - | chr3.2:44871392-44871411 | None:intergenic | 35.0% | |
| ATATTGCAAGGGAACACTTT+CGG | - | chr3.2:44871218-44871237 | None:intergenic | 35.0% | |
| CTCTCCAATTGATATTGCAA+GGG | - | chr3.2:44871229-44871248 | None:intergenic | 35.0% | |
| GCAATATCAATTGGAGAGAA+TGG | + | chr3.2:44871231-44871250 | MS.gene043643:intron | 35.0% | |
| GTCTGCAATCTGTATAAGTT+TGG | + | chr3.2:44871397-44871416 | MS.gene043643:intron | 35.0% | |
| GTGATGTTTAATTAGAGAGC+AGG | + | chr3.2:44871151-44871170 | MS.gene043643:intron | 35.0% | |
| TATACAGATTGCAGACATGA+AGG | - | chr3.2:44871393-44871412 | None:intergenic | 35.0% | |
| TATGGGATTAATTCCCTCTT+TGG | - | chr3.2:44870627-44870646 | None:intergenic | 35.0% | |
| TCTCTCCAATTGATATTGCA+AGG | - | chr3.2:44871230-44871249 | None:intergenic | 35.0% | |
| TCTTGGTTACTGTCGTAAAT+TGG | + | chr3.2:44871703-44871722 | MS.gene043643:intron | 35.0% | |
| TGTTCCCTTGCAATATCAAT+TGG | + | chr3.2:44871222-44871241 | MS.gene043643:intron | 35.0% | |
| TTCTTGTCTTCCTCAATGTT+GGG | - | chr3.2:44869986-44870005 | None:intergenic | 35.0% | |
| TTGGACATTTCAAAGTGAAC+TGG | + | chr3.2:44871518-44871537 | MS.gene043643:intron | 35.0% | |
| TTGGGTGATATGGAAACATT+AGG | + | chr3.2:44870951-44870970 | MS.gene043643:intron | 35.0% | |
| ! | AAAGAGTTTTACTCTGGTGT+TGG | + | chr3.2:44871548-44871567 | MS.gene043643:intron | 35.0% |
| ! | ATGCTAATCTTGGTCTGTTT+TGG | + | chr3.2:44871756-44871775 | MS.gene043643:intron | 35.0% |
| ! | GTTTCTTGTTTCGATTTCCA+GGG | + | chr3.2:44870060-44870079 | MS.gene043643:intron | 35.0% |
| ! | TGGTATCTTGTTGATGAGTT+GGG | + | chr3.2:44870792-44870811 | MS.gene043643:intron | 35.0% |
| ! | TGTTTCTTGTTTCGATTTCC+AGG | + | chr3.2:44870059-44870078 | MS.gene043643:intron | 35.0% |
| !! | ATGGTAACGAAGTGTTTTTC+AGG | + | chr3.2:44871789-44871808 | MS.gene043643:CDS | 35.0% |
| !! | CCATTGCTTTTCTCTTTGAT+GGG | + | chr3.2:44871882-44871901 | MS.gene043643:CDS | 35.0% |
| !! | TCCATTGCTTTTCTCTTTGA+TGG | + | chr3.2:44871881-44871900 | MS.gene043643:CDS | 35.0% |
| !! | TTTTACTCTGGTGTTGGATT+TGG | + | chr3.2:44871554-44871573 | MS.gene043643:intron | 35.0% |
| !!! | AAGTGTTTTTCAGGATCAAG+AGG | + | chr3.2:44871798-44871817 | MS.gene043643:CDS | 35.0% |
| !!! | GGATCGGTGATTTTTAACTT+CGG | + | chr3.2:44870136-44870155 | MS.gene043643:intron | 35.0% |
| CCCATCAAAGAGAAAAGCAA+TGG | - | chr3.2:44871885-44871904 | None:intergenic | 40.0% | |
| CTTCTTGTCTTCCTCAATGT+TGG | - | chr3.2:44869987-44870006 | None:intergenic | 40.0% | |
| GTCATATTCACGAACCTCAT+CGG | - | chr3.2:44871933-44871952 | None:intergenic | 40.0% | |
| GTTTCCATATCACCCAAAAG+TGG | - | chr3.2:44870948-44870967 | None:intergenic | 40.0% | |
| TCATATTCACGAACCTCATC+GGG | - | chr3.2:44871932-44871951 | None:intergenic | 40.0% | |
| TGAATGCTGGAATGCTTATG+TGG | + | chr3.2:44870772-44870791 | MS.gene043643:intron | 40.0% | |
| TGGTTACTGTCGTAAATTGG+TGG | + | chr3.2:44871706-44871725 | MS.gene043643:intron | 40.0% | |
| TTCAGTTGGAGATGGAAGAT+GGG | + | chr3.2:44872042-44872061 | MS.gene043643:intron | 40.0% | |
| TTTCAGTTGGAGATGGAAGA+TGG | + | chr3.2:44872041-44872060 | MS.gene043643:intron | 40.0% | |
| ! | GTGGTATCTTGTTGATGAGT+TGG | + | chr3.2:44870791-44870810 | MS.gene043643:intron | 40.0% |
| ! | TGGTTACATGGAACTAGTCT+TGG | + | chr3.2:44871686-44871705 | MS.gene043643:intron | 40.0% |
| !! | CTGTTTTGGATGTTGTAGGA+TGG | + | chr3.2:44871770-44871789 | MS.gene043643:intron | 40.0% |
| !! | TGGTCTGTTTTGGATGTTGT+AGG | + | chr3.2:44871766-44871785 | MS.gene043643:intron | 40.0% |
| AGAGCAGGGATAGTGTGTAT+CGG | + | chr3.2:44871166-44871185 | MS.gene043643:intron | 45.0% | |
| CACATCAACCTCAAGGTCAA+GGG | + | chr3.2:44870025-44870044 | MS.gene043643:CDS | 45.0% | |
| CTTCCATCTCCAACTGAAAC+AGG | - | chr3.2:44872040-44872059 | None:intergenic | 45.0% | |
| TCACATCAACCTCAAGGTCA+AGG | + | chr3.2:44870024-44870043 | MS.gene043643:CDS | 45.0% | |
| TCAGTTGGAGATGGAAGATG+GGG | + | chr3.2:44872043-44872062 | MS.gene043643:intron | 45.0% | |
| TGGTTTCATACACTGTCGTG+TGG | - | chr3.2:44870498-44870517 | None:intergenic | 45.0% | |
| TGTCCTGTTTCAGTTGGAGA+TGG | + | chr3.2:44872034-44872053 | MS.gene043643:intron | 45.0% | |
| TTACTGTGATCGTCAGTCTG+TGG | + | chr3.2:44871850-44871869 | MS.gene043643:CDS | 45.0% | |
| ! | CGGGTGATAGCCAAATCTTT+TGG | + | chr3.2:44870920-44870939 | MS.gene043643:intron | 45.0% |
| ! | TACTCTGGTGTTGGATTTGG+TGG | + | chr3.2:44871557-44871576 | MS.gene043643:intron | 45.0% |
| !! | GGTTCCACTTTTGGGTGATA+TGG | + | chr3.2:44870941-44870960 | MS.gene043643:intron | 45.0% |
| !! | TATTATCAAAAAAATATATT+TGG | - | chr3.2:44871979-44871998 | None:intergenic | 5.0% |
| !!! | TAAAGTTTTTTTTTTTTTTT+TGG | + | chr3.2:44870251-44870270 | MS.gene043643:intron | 5.0% |
| ACCTCCTGTCTGATGAAGCA+TGG | - | chr3.2:44872081-44872100 | None:intergenic | 50.0% | |
| GAAGACAAGAAGCCAGAAGC+TGG | + | chr3.2:44869995-44870014 | MS.gene043643:CDS | 50.0% | |
| TGGTGCTCACATCAACCTCA+AGG | + | chr3.2:44870018-44870037 | MS.gene043643:CDS | 50.0% | |
| ATGTGAGCACCACCAGCTTC+TGG | - | chr3.2:44870010-44870029 | None:intergenic | 55.0% | |
| CAACCTCAAGGTCAAGGGTC+AGG | + | chr3.2:44870030-44870049 | MS.gene043643:CDS | 55.0% | |
| GAACCTGACCCTTGACCTTG+AGG | - | chr3.2:44870036-44870055 | None:intergenic | 55.0% | |
| GACAAGAAGCCAGAAGCTGG+TGG | + | chr3.2:44869998-44870017 | MS.gene043643:CDS | 55.0% | |
| GACGCCATGCTTCATCAGAC+AGG | + | chr3.2:44872074-44872093 | MS.gene043643:CDS | 55.0% | |
| GCCATGCTTCATCAGACAGG+AGG | + | chr3.2:44872077-44872096 | MS.gene043643:CDS | 55.0% | |
| TGCAGCTGCTCCCAACATTG+AGG | + | chr3.2:44869973-44869992 | MS.gene043643:CDS | 55.0% | |
| CATCGGGAGTCTGCTCAGCA+CGG | - | chr3.2:44871916-44871935 | None:intergenic | 60.0% | |
| TGCTGAGCAGACTCCCGATG+AGG | + | chr3.2:44871916-44871935 | MS.gene043643:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 44869962 | 44872112 | 44869962 | ID=MS.gene043643 |
| chr3.2 | mRNA | 44869962 | 44872112 | 44869962 | ID=MS.gene043643.t1;Parent=MS.gene043643 |
| chr3.2 | exon | 44869962 | 44870051 | 44869962 | ID=MS.gene043643.t1.exon1;Parent=MS.gene043643.t1 |
| chr3.2 | CDS | 44869962 | 44870051 | 44869962 | ID=cds.MS.gene043643.t1;Parent=MS.gene043643.t1 |
| chr3.2 | exon | 44871788 | 44871937 | 44871788 | ID=MS.gene043643.t1.exon2;Parent=MS.gene043643.t1 |
| chr3.2 | CDS | 44871788 | 44871937 | 44871788 | ID=cds.MS.gene043643.t1;Parent=MS.gene043643.t1 |
| chr3.2 | exon | 44872047 | 44872112 | 44872047 | ID=MS.gene043643.t1.exon3;Parent=MS.gene043643.t1 |
| chr3.2 | CDS | 44872047 | 44872112 | 44872047 | ID=cds.MS.gene043643.t1;Parent=MS.gene043643.t1 |
| Gene Sequence |
| Protein sequence |
