AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001264

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001264.t1 MTR_2g099175 95.833 336 11 1 1 333 1 336 0.0 677
MS.gene001264.t1 MTR_7g086870 44.702 302 153 4 33 332 22 311 8.93e-81 248
MS.gene001264.t1 MTR_7g086820 40.924 303 168 4 33 333 20 313 5.00e-76 236
MS.gene001264.t1 MTR_7g093370 38.988 336 183 8 5 332 50 371 5.79e-75 235
MS.gene001264.t1 MTR_1g054205 41.748 309 167 7 32 332 23 326 2.23e-74 232
MS.gene001264.t1 MTR_5g022870 39.458 332 180 8 4 332 3 316 1.03e-70 223
MS.gene001264.t1 MTR_2g040000 38.485 330 190 5 12 333 8 332 6.08e-70 221
MS.gene001264.t1 MTR_8g075100 38.614 303 174 6 33 332 26 319 2.57e-69 219
MS.gene001264.t1 MTR_2g029820 37.427 342 192 7 1 332 1 330 2.85e-69 220
MS.gene001264.t1 MTR_2g029815 37.758 339 191 8 3 333 5 331 3.54e-69 220
MS.gene001264.t1 MTR_2g088770 38.390 323 187 6 15 332 10 325 5.08e-69 219
MS.gene001264.t1 MTR_6g027440 40.264 303 171 4 32 332 20 314 2.25e-68 217
MS.gene001264.t1 MTR_4g114210 39.871 311 175 5 28 332 16 320 4.59e-67 213
MS.gene001264.t1 MTR_2g008710 37.798 336 191 6 2 332 3 325 4.71e-67 213
MS.gene001264.t1 MTR_4g125940 37.942 311 181 5 30 333 25 330 8.19e-67 213
MS.gene001264.t1 MTR_2g078610 38.182 330 169 7 32 328 75 402 4.81e-66 213
MS.gene001264.t1 MTR_4g046713 38.390 323 189 4 15 332 9 326 5.13e-66 211
MS.gene001264.t1 MTR_7g107520 36.228 334 194 6 3 332 2 320 1.06e-65 210
MS.gene001264.t1 MTR_3g105790 39.264 326 182 6 11 332 9 322 1.99e-65 209
MS.gene001264.t1 MTR_2g029830 37.500 312 177 7 32 333 27 330 4.05e-65 209
MS.gene001264.t1 MTR_2g067440 37.538 325 175 6 32 328 59 383 4.44e-65 210
MS.gene001264.t1 MTR_2g077990 37.500 328 174 6 32 328 75 402 8.47e-65 210
MS.gene001264.t1 MTR_1g101830 36.890 328 188 7 9 332 10 322 1.23e-64 207
MS.gene001264.t1 MTR_4g125940 40.580 276 152 5 65 333 5 275 1.88e-64 205
MS.gene001264.t1 MTR_2g028980 36.336 333 187 8 11 333 14 331 2.43e-64 207
MS.gene001264.t1 MTR_5g014100 39.286 308 171 6 36 332 29 331 3.63e-64 206
MS.gene001264.t1 MTR_4g133800 40.468 299 167 6 37 333 45 334 5.01e-64 206
MS.gene001264.t1 MTR_2g029850 35.976 328 198 6 12 332 8 330 8.66e-64 206
MS.gene001264.t1 MTR_5g017850 39.216 306 176 5 32 332 26 326 1.16e-63 205
MS.gene001264.t1 MTR_8g076820 37.126 334 177 9 14 332 15 330 1.39e-63 205
MS.gene001264.t1 MTR_3g092990 37.015 335 193 6 3 332 5 326 2.60e-63 204
MS.gene001264.t1 MTR_5g017860 39.542 306 175 5 32 332 26 326 4.01e-63 203
MS.gene001264.t1 MTR_1g086320 37.879 330 193 7 11 332 8 333 4.20e-63 204
MS.gene001264.t1 MTR_5g021060 38.284 303 176 6 36 332 33 330 5.97e-63 203
MS.gene001264.t1 MTR_3g094650 37.338 308 174 6 32 332 27 322 9.42e-63 202
MS.gene001264.t1 MTR_5g049280 37.888 322 171 11 28 332 28 337 3.63e-62 201
MS.gene001264.t1 MTR_2g029800 35.045 331 197 7 12 332 8 330 9.78e-62 201
MS.gene001264.t1 MTR_5g083860 35.866 329 189 7 11 332 12 325 1.03e-61 200
MS.gene001264.t1 MTR_2g029860 35.691 311 182 6 32 332 28 330 1.04e-61 201
MS.gene001264.t1 MTR_1g025980 38.333 300 172 7 33 328 24 314 1.67e-61 199
MS.gene001264.t1 MTR_2g029740 34.545 330 204 6 11 333 7 331 3.18e-61 199
MS.gene001264.t1 MTR_7g026990 37.542 301 170 5 37 332 35 322 5.75e-61 198
MS.gene001264.t1 MTR_1g086490 37.838 333 196 5 11 332 8 340 1.01e-60 197
MS.gene001264.t1 MTR_2g029750 34.412 340 207 6 1 333 1 331 1.40e-60 197
MS.gene001264.t1 MTR_2g008160 40.514 311 169 7 30 332 21 323 8.69e-60 195
MS.gene001264.t1 MTR_4g029170 37.785 307 172 7 33 332 27 321 1.24e-59 194
MS.gene001264.t1 MTR_7g029030 33.728 338 200 7 1 332 1 320 1.64e-59 194
MS.gene001264.t1 MTR_2g029560 37.143 280 164 5 60 332 51 325 2.53e-59 194
MS.gene001264.t1 MTR_1g038680 37.785 307 179 7 34 332 30 332 4.44e-59 193
MS.gene001264.t1 MTR_2g078280 36.792 318 170 6 32 318 75 392 5.99e-59 194
MS.gene001264.t1 MTR_3g072190 35.207 338 193 6 1 332 1 318 9.52e-59 192
MS.gene001264.t1 MTR_4g087965 36.036 333 199 7 5 328 15 342 1.29e-58 192
MS.gene001264.t1 MTR_4g132490 35.417 336 200 6 5 332 1 327 1.98e-58 191
MS.gene001264.t1 MTR_5g074860 38.436 307 166 9 33 329 29 322 2.04e-58 191
MS.gene001264.t1 MTR_1g077000 35.522 335 199 4 1 332 7 327 3.31e-58 191
MS.gene001264.t1 MTR_2g029830 39.245 265 143 7 79 333 6 262 3.36e-58 189
MS.gene001264.t1 MTR_3g094630 36.585 328 185 7 12 332 11 322 4.02e-58 190
MS.gene001264.t1 MTR_4g029200 35.897 312 180 6 29 332 39 338 5.64e-58 191
MS.gene001264.t1 MTR_4g083710 36.012 336 190 9 7 332 4 324 7.90e-58 190
MS.gene001264.t1 MTR_3g094670 36.280 328 186 7 12 332 11 322 9.08e-58 189
MS.gene001264.t1 MTR_1g090760 33.824 340 209 6 1 333 1 331 1.14e-57 189
MS.gene001264.t1 MTR_2g029730 37.500 280 163 4 60 332 52 326 1.16e-57 190
MS.gene001264.t1 MTR_7g072510 32.934 334 197 7 4 332 1 312 4.55e-57 187
MS.gene001264.t1 MTR_3g466200 34.663 326 193 6 13 332 9 320 8.42e-57 187
MS.gene001264.t1 MTR_4g029180 37.171 304 172 6 36 332 30 321 8.65e-57 187
MS.gene001264.t1 MTR_4g031140 34.426 305 187 5 33 332 28 324 8.76e-57 187
MS.gene001264.t1 MTR_1g022970 37.134 307 181 5 33 332 46 347 1.72e-56 187
MS.gene001264.t1 MTR_2g084010 34.756 328 192 7 11 332 7 318 2.16e-56 186
MS.gene001264.t1 MTR_0147s0010 36.422 313 171 6 33 328 77 378 2.88e-56 187
MS.gene001264.t1 MTR_4g030890 35.667 300 180 5 38 332 105 396 3.42e-56 188
MS.gene001264.t1 MTR_1g009750 33.140 344 202 7 1 332 1 328 4.16e-56 185
MS.gene001264.t1 MTR_2g029910 33.828 337 211 6 5 333 1 333 6.64e-56 186
MS.gene001264.t1 MTR_2g084080 33.033 333 202 5 5 332 1 317 6.90e-56 184
MS.gene001264.t1 MTR_5g074970 36.156 307 181 5 32 332 29 326 7.99e-56 184
MS.gene001264.t1 MTR_0155s0040 33.433 335 200 6 1 332 1 315 8.53e-56 184
MS.gene001264.t1 MTR_3g467600 36.637 333 181 10 11 332 11 324 8.61e-56 184
MS.gene001264.t1 MTR_3g092990 35.821 335 186 7 3 332 5 315 8.68e-56 184
MS.gene001264.t1 MTR_2g084020 34.146 328 194 7 11 332 7 318 1.65e-55 183
MS.gene001264.t1 MTR_6g043460 34.940 332 195 6 11 333 10 329 1.89e-55 184
MS.gene001264.t1 MTR_2g084110 34.451 328 192 7 11 332 7 317 2.03e-55 183
MS.gene001264.t1 MTR_5g016010 33.657 309 184 5 32 328 26 325 2.98e-55 183
MS.gene001264.t1 MTR_4g127670 35.831 307 185 5 32 332 23 323 4.26e-55 182
MS.gene001264.t1 MTR_4g122640 36.877 301 177 5 38 332 43 336 9.63e-55 182
MS.gene001264.t1 MTR_2g437770 37.624 303 175 6 33 332 50 341 9.85e-55 182
MS.gene001264.t1 MTR_2g084000 35.061 328 195 8 11 332 4 319 1.50e-54 181
MS.gene001264.t1 MTR_4g029190 37.500 296 170 6 42 332 55 340 1.56e-54 182
MS.gene001264.t1 MTR_2g008730 34.132 334 178 6 4 332 5 301 2.75e-54 180
MS.gene001264.t1 MTR_5g074740 34.743 331 193 9 13 333 5 322 8.96e-54 179
MS.gene001264.t1 MTR_2g084090 33.951 324 195 7 15 332 8 318 2.19e-53 178
MS.gene001264.t1 MTR_5g074760 34.018 341 193 11 3 333 4 322 2.75e-53 178
MS.gene001264.t1 MTR_6g043240 32.934 334 204 7 6 332 11 331 9.10e-53 177
MS.gene001264.t1 MTR_4g132110 34.385 317 191 5 24 333 23 329 1.61e-52 176
MS.gene001264.t1 MTR_1g066640 33.550 307 193 4 30 332 24 323 2.61e-52 175
MS.gene001264.t1 MTR_4g074995 34.740 308 172 8 32 332 23 308 3.10e-52 175
MS.gene001264.t1 MTR_3g466180 36.601 306 177 6 32 332 30 323 3.38e-52 175
MS.gene001264.t1 MTR_1g115900 32.628 331 208 6 7 332 1 321 4.71e-52 175
MS.gene001264.t1 MTR_1g066710 32.248 307 197 4 30 332 24 323 5.06e-52 175
MS.gene001264.t1 MTR_5g074710 35.256 312 179 9 32 333 24 322 5.23e-52 174
MS.gene001264.t1 MTR_2g067450 35.714 308 176 5 32 328 10 306 7.20e-52 174
MS.gene001264.t1 MTR_1g066380 32.787 305 194 4 32 332 26 323 8.18e-51 171
MS.gene001264.t1 MTR_1g066680 33.225 307 193 5 30 332 24 322 1.91e-50 171
MS.gene001264.t1 MTR_4g132110 33.851 322 191 6 24 333 23 334 2.22e-50 171
MS.gene001264.t1 MTR_6g043280 32.727 330 202 6 11 332 15 332 2.52e-50 171
MS.gene001264.t1 MTR_7g072480 32.923 325 197 6 13 332 8 316 7.28e-50 169
MS.gene001264.t1 MTR_0286s0010 36.688 308 182 7 32 332 33 334 1.12e-49 169
MS.gene001264.t1 MTR_6g008075 36.688 308 182 7 32 332 33 334 1.12e-49 169
MS.gene001264.t1 MTR_4g074990 32.934 334 187 9 7 332 1 305 1.84e-49 167
MS.gene001264.t1 MTR_4g095450 33.115 305 186 6 32 328 26 320 2.42e-49 167
MS.gene001264.t1 MTR_3g072190 36.122 263 149 5 76 332 2 251 1.46e-48 163
MS.gene001264.t1 MTR_5g033470 32.154 311 200 4 30 332 70 377 3.99e-48 166
MS.gene001264.t1 MTR_8g062780 31.818 330 211 6 11 332 1 324 3.61e-47 162
MS.gene001264.t1 MTR_3g105790 39.357 249 142 4 88 332 3 246 5.42e-47 159
MS.gene001264.t1 MTR_1g009750 30.769 338 201 8 1 332 1 311 9.15e-47 160
MS.gene001264.t1 MTR_4g074980 32.326 331 182 9 7 332 1 294 2.70e-46 159
MS.gene001264.t1 MTR_2g008160 36.013 311 148 7 30 332 21 288 1.54e-44 154
MS.gene001264.t1 MTR_1g066380 33.846 260 161 4 77 332 3 255 1.82e-42 148
MS.gene001264.t1 MTR_5g074860 33.550 307 142 9 33 329 29 283 1.28e-40 144
MS.gene001264.t1 MTR_4g074980 34.940 249 149 6 7 250 1 241 6.05e-40 141
MS.gene001264.t1 MTR_2g008160 42.775 173 98 1 30 201 21 193 1.11e-36 131
MS.gene001264.t1 MTR_2g029880 35.025 197 109 3 140 332 7 188 2.55e-33 122
MS.gene001264.t1 MTR_2g078560 32.143 224 124 4 135 330 95 318 1.62e-31 120
MS.gene001264.t1 MTR_5g074700 32.051 234 129 8 105 333 7 215 5.16e-30 114
MS.gene001264.t1 MTR_2g077980 30.370 270 154 5 93 328 11 280 2.37e-29 114
MS.gene001264.t1 MTR_3g072210 31.472 197 117 6 141 332 55 238 2.29e-23 97.1
MS.gene001264.t1 MTR_5g058120 33.133 166 95 2 163 328 6 155 5.92e-23 96.3
MS.gene001264.t1 MTR_7g086790 32.653 196 106 6 80 273 17 188 1.74e-22 93.6
MS.gene001264.t1 MTR_3g072260 41.221 131 70 2 9 136 6 132 4.83e-20 85.5
MS.gene001264.t1 MTR_7g072490 29.365 252 107 7 79 325 2 187 1.64e-19 85.9
MS.gene001264.t1 MTR_6g048160 58.462 65 26 1 72 136 22 85 2.95e-18 79.0
MS.gene001264.t1 MTR_3g462850 33.548 155 83 8 188 332 5 149 6.55e-18 79.7
MS.gene001264.t1 MTR_4g114220 46.237 93 41 3 49 139 17 102 1.16e-16 76.3
MS.gene001264.t1 MTR_7g086810 33.913 115 53 1 33 147 6 97 6.47e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001264.t1 AT5G24070 63.690 336 114 3 4 332 1 335 5.80e-158 446
MS.gene001264.t1 AT2G43480 66.007 303 100 2 32 332 34 335 7.25e-157 442
MS.gene001264.t1 AT5G22410 41.049 324 178 6 11 331 11 324 5.51e-75 234
MS.gene001264.t1 AT5G17820 40.924 303 165 3 32 332 23 313 1.27e-74 233
MS.gene001264.t1 AT3G03670 40.984 305 171 3 32 332 22 321 2.11e-73 230
MS.gene001264.t1 AT5G17820 40.924 303 165 3 32 332 76 366 3.25e-73 231
MS.gene001264.t1 AT5G06730 37.764 331 190 6 9 332 13 334 1.68e-71 226
MS.gene001264.t1 AT5G06720 37.386 329 190 6 11 332 14 333 2.47e-70 222
MS.gene001264.t1 AT5G15180 39.803 304 173 4 33 332 32 329 2.54e-70 222
MS.gene001264.t1 AT2G41480 42.671 307 162 6 33 332 29 328 3.54e-69 219
MS.gene001264.t1 AT1G34510 39.672 305 164 6 32 332 21 309 1.47e-68 217
MS.gene001264.t1 AT5G51890 39.755 327 181 6 11 332 7 322 1.19e-67 215
MS.gene001264.t1 AT5G39580 40.123 324 185 6 11 332 3 319 1.23e-67 215
MS.gene001264.t1 AT5G19880 39.701 335 169 10 12 332 14 329 1.27e-67 215
MS.gene001264.t1 AT5G66390 39.144 327 186 7 12 332 14 333 1.90e-67 215
MS.gene001264.t1 AT4G26010 39.344 305 167 5 32 333 21 310 2.21e-67 214
MS.gene001264.t1 AT1G05260 38.961 308 180 5 30 333 23 326 3.84e-67 214
MS.gene001264.t1 AT4G11290 38.511 309 180 4 30 332 22 326 4.81e-67 214
MS.gene001264.t1 AT4G26010 39.344 305 167 5 32 333 49 338 6.16e-67 214
MS.gene001264.t1 AT5G42180 40.000 300 169 6 33 329 23 314 1.52e-66 212
MS.gene001264.t1 AT5G19890 37.879 330 184 8 11 333 13 328 1.55e-66 212
MS.gene001264.t1 AT3G32980 37.461 323 185 7 20 333 21 335 8.39e-66 211
MS.gene001264.t1 AT5G64120 38.838 327 188 6 11 332 9 328 1.84e-65 209
MS.gene001264.t1 AT4G36430 36.196 326 193 6 13 332 14 330 4.59e-65 209
MS.gene001264.t1 AT1G05240 37.255 306 180 4 33 332 26 325 5.82e-65 208
MS.gene001264.t1 AT1G05250 37.255 306 180 4 33 332 26 325 5.82e-65 208
MS.gene001264.t1 AT4G33870 35.758 330 178 4 33 328 68 397 1.14e-64 210
MS.gene001264.t1 AT3G50990 36.556 331 191 7 9 332 23 341 1.18e-64 208
MS.gene001264.t1 AT3G01190 38.511 309 182 3 26 332 19 321 6.95e-64 205
MS.gene001264.t1 AT2G18140 35.484 341 207 8 1 333 1 336 1.19e-63 205
MS.gene001264.t1 AT3G21770 36.721 305 185 4 28 328 24 324 2.91e-63 204
MS.gene001264.t1 AT2G39040 40.777 309 172 7 32 332 45 350 8.73e-63 203
MS.gene001264.t1 AT3G49110 36.747 332 192 8 11 333 15 337 1.07e-62 203
MS.gene001264.t1 AT1G30870 40.656 305 166 6 33 332 51 345 2.07e-62 202
MS.gene001264.t1 AT5G14130 34.731 334 193 7 10 332 11 330 2.86e-62 201
MS.gene001264.t1 AT2G18150 35.224 335 200 8 11 333 8 337 2.94e-62 202
MS.gene001264.t1 AT5G14130 34.731 334 193 7 10 332 52 371 9.00e-62 201
MS.gene001264.t1 AT3G49120 36.747 332 192 9 11 333 14 336 9.50e-62 201
MS.gene001264.t1 AT1G68850 34.503 342 207 8 1 332 1 335 3.25e-61 199
MS.gene001264.t1 AT2G24800 37.785 307 178 6 32 332 30 329 7.84e-61 197
MS.gene001264.t1 AT4G31760 35.621 306 185 5 32 332 28 326 6.10e-60 195
MS.gene001264.t1 AT5G05340 34.839 310 183 5 30 332 27 324 2.41e-59 194
MS.gene001264.t1 AT2G38380 35.366 328 193 7 16 332 14 333 2.61e-59 194
MS.gene001264.t1 AT1G14550 36.013 311 179 6 30 332 23 321 1.76e-58 191
MS.gene001264.t1 AT5G58400 36.615 325 189 6 14 332 12 325 2.14e-58 191
MS.gene001264.t1 AT5G64110 37.377 305 182 3 31 332 32 330 2.61e-58 191
MS.gene001264.t1 AT2G22420 35.621 306 184 5 33 333 23 320 3.43e-58 191
MS.gene001264.t1 AT2G38390 35.385 325 197 6 16 332 14 333 5.16e-58 191
MS.gene001264.t1 AT4G08770 39.362 282 157 7 60 332 51 327 5.78e-58 191
MS.gene001264.t1 AT1G49570 37.582 306 180 6 32 330 47 348 6.02e-58 191
MS.gene001264.t1 AT2G18980 34.769 325 199 6 14 332 6 323 1.17e-57 189
MS.gene001264.t1 AT4G25980 35.329 334 195 4 5 332 8 326 4.85e-57 188
MS.gene001264.t1 AT4G37530 35.738 305 183 5 32 328 26 325 4.99e-57 188
MS.gene001264.t1 AT5G64100 38.462 299 171 5 38 332 42 331 5.56e-57 188
MS.gene001264.t1 AT1G14540 35.583 326 188 8 13 332 6 315 1.68e-56 186
MS.gene001264.t1 AT4G21960 35.015 337 198 6 4 333 6 328 1.91e-56 186
MS.gene001264.t1 AT1G71695 34.286 315 184 9 28 332 38 339 2.63e-56 187
MS.gene001264.t1 AT1G44970 34.604 341 206 6 4 332 11 346 2.74e-56 186
MS.gene001264.t1 AT4G08780 36.452 310 183 7 32 332 23 327 6.18e-56 186
MS.gene001264.t1 AT2G35380 36.202 337 195 9 7 332 8 335 6.83e-56 185
MS.gene001264.t1 AT5G58390 34.921 315 185 5 26 332 14 316 7.74e-56 184
MS.gene001264.t1 AT4G33420 36.964 303 174 4 33 332 37 325 7.38e-55 182
MS.gene001264.t1 AT4G30170 34.853 307 187 6 32 332 26 325 1.53e-54 181
MS.gene001264.t1 AT4G33420 36.964 303 174 4 33 332 84 372 1.98e-54 182
MS.gene001264.t1 AT4G37520 35.410 305 184 5 32 328 26 325 2.29e-54 181
MS.gene001264.t1 AT2G34060 36.102 313 185 7 28 329 35 343 1.73e-53 179
MS.gene001264.t1 AT4G16270 38.562 306 175 7 33 332 50 348 3.96e-53 178
MS.gene001264.t1 AT4G17690 35.669 314 185 7 27 333 20 323 1.45e-52 176
MS.gene001264.t1 AT1G77100 35.119 336 194 8 4 332 1 319 2.08e-52 176
MS.gene001264.t1 AT3G17070 33.775 302 190 4 33 328 38 335 3.14e-52 176
MS.gene001264.t1 AT4G37520 35.410 305 181 6 32 328 26 322 3.87e-52 175
MS.gene001264.t1 AT5G67400 33.231 325 204 5 12 328 6 325 5.18e-51 172
MS.gene001264.t1 AT3G49960 33.770 305 189 5 32 328 26 325 1.28e-50 171
MS.gene001264.t1 AT2G37130 32.353 306 195 5 32 332 29 327 1.98e-48 166
MS.gene001264.t1 AT5G47000 33.739 329 202 7 10 332 12 330 3.36e-48 165
MS.gene001264.t1 AT2G37130 32.450 302 192 5 36 332 2 296 1.39e-47 162
MS.gene001264.t1 AT4G37530 36.782 261 151 6 32 284 26 280 4.55e-47 160
MS.gene001264.t1 AT1G24110 34.451 328 189 10 20 332 6 322 1.56e-45 158
MS.gene001264.t1 AT3G17070 34.231 260 160 5 75 328 18 272 8.26e-43 149
MS.gene001264.t1 AT2G35380 36.546 249 144 6 93 332 4 247 5.05e-41 144
MS.gene001264.t1 AT5G40150 31.833 311 197 5 28 332 27 328 7.52e-41 145
MS.gene001264.t1 AT3G28200 30.421 309 199 5 30 332 18 316 5.48e-40 143
MS.gene001264.t1 AT2G24800 43.902 164 89 2 32 193 30 192 7.49e-39 138
MS.gene001264.t1 AT5G39580 40.404 198 112 3 38 230 30 226 1.92e-36 131
MS.gene001264.t1 AT4G25980 34.934 229 139 3 13 235 55 279 2.77e-35 130
MS.gene001264.t1 AT3G42570 34.653 101 63 2 98 195 49 149 1.59e-11 62.0

Find 0 sgRNAs with CRISPR-Local

Find 139 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTATAAAATAAAATAAAA+TGG - 14719:4623-4642 None:intergenic 0.0%
!! ATTATAAAATAAAATAAAAT+GGG - 14719:4622-4641 None:intergenic 0.0%
!!! TTTTATTTTATTTTATAATT+TGG + 14719:4623-4642 MS.gene001264:intron 0.0%
!! TTCATTTATAATGTTTAGAA+TGG - 14719:4938-4957 None:intergenic 15.0%
!! ACTCTATATACTAAGTTAAA+TGG - 14719:4878-4897 None:intergenic 20.0%
!! TAGCTTAAAAAGTTGAAAAA+TGG - 14719:4672-4691 None:intergenic 20.0%
!!! GAATATATTTTAGTTTCAGA+GGG - 14719:4787-4806 None:intergenic 20.0%
!!! TGAATATATTTTAGTTTCAG+AGG - 14719:4788-4807 None:intergenic 20.0%
!!! TTGAGATAAGATTTTATTTG+CGG - 14719:5241-5260 None:intergenic 20.0%
!!! TTTAGAATGGTAAGTTTAAA+TGG - 14719:4925-4944 None:intergenic 20.0%
! ATAAAATCTTATCTCAAGGT+AGG + 14719:5244-5263 MS.gene001264:intron 25.0%
! ATCGATCAACAATTACTATT+TGG + 14719:5802-5821 MS.gene001264:CDS 25.0%
! ATTTGAGAATTAATGTCAAC+AGG + 14719:5293-5312 MS.gene001264:intron 25.0%
! GCAAATAAAATCTTATCTCA+AGG + 14719:5240-5259 MS.gene001264:intron 25.0%
! GTTGACATTAATTCTCAAAT+CGG - 14719:5293-5312 None:intergenic 25.0%
! TAAAATCTTATCTCAAGGTA+GGG + 14719:5245-5264 MS.gene001264:intron 25.0%
! TCAGAGAATCATACTATAAA+AGG + 14719:5752-5771 MS.gene001264:CDS 25.0%
! TCTAGCATACTTTAAATCAA+GGG + 14719:5419-5438 MS.gene001264:CDS 25.0%
!! ACCAACAATATGTTCTAAAT+GGG + 14719:5509-5528 MS.gene001264:intron 25.0%
!! TACCAACAATATGTTCTAAA+TGG + 14719:5508-5527 MS.gene001264:intron 25.0%
!!! AAAGTTTTAACAGGAAATCA+AGG + 14719:5919-5938 MS.gene001264:CDS 25.0%
!!! GGAAATATCAAAGTTTTAAC+AGG + 14719:5910-5929 MS.gene001264:CDS 25.0%
AAAATCTTATCTCAAGGTAG+GGG + 14719:5246-5265 MS.gene001264:intron 30.0%
ACATACATTGACAAAACAGT+CGG - 14719:4598-4617 None:intergenic 30.0%
ACTGCAAAAGCTATTATTAG+TGG - 14719:4408-4427 None:intergenic 30.0%
ATAGGACTATGAACAACTAA+AGG + 14719:4740-4759 MS.gene001264:intron 30.0%
CTAGCATACTTTAAATCAAG+GGG + 14719:5420-5439 MS.gene001264:CDS 30.0%
CTCTAGCATACTTTAAATCA+AGG + 14719:5418-5437 MS.gene001264:CDS 30.0%
CTGCAAAAGCTATTATTAGT+GGG - 14719:4407-4426 None:intergenic 30.0%
CTGTATAATTACAATGGTAC+TGG + 14719:5601-5620 MS.gene001264:CDS 30.0%
CTTAGTATATAGAGTTCATG+AGG + 14719:4883-4902 MS.gene001264:intron 30.0%
TAAGAAAGATACATACTGTG+AGG + 14719:4690-4709 MS.gene001264:intron 30.0%
TTAGATATGACAACACTCTT+AGG + 14719:5453-5472 MS.gene001264:CDS 30.0%
TTTGTCCTTTCTTTGTTCTT+GGG - 14719:5684-5703 None:intergenic 30.0%
! AAACTTAAATCGTTGTTTCG+TGG + 14719:4982-5001 MS.gene001264:intron 30.0%
! ACCCATTTAGAACATATTGT+TGG - 14719:5513-5532 None:intergenic 30.0%
! GAAACAACGATTTAAGTTTC+AGG - 14719:4981-5000 None:intergenic 30.0%
! GATATTTCCCATTTTGAACA+TGG - 14719:5899-5918 None:intergenic 30.0%
!! AGATAAGATTTTATTTGCGG+AGG - 14719:5238-5257 None:intergenic 30.0%
!! ATAAGATTTTATTTGCGGAG+GGG - 14719:5236-5255 None:intergenic 30.0%
!! GATAAGATTTTATTTGCGGA+GGG - 14719:5237-5256 None:intergenic 30.0%
ACTATGAACAACTAAAGGAC+AGG + 14719:4745-4764 MS.gene001264:intron 35.0%
ATACTTTAAATCAAGGGGAC+TGG + 14719:5425-5444 MS.gene001264:CDS 35.0%
CTTTGTCCTTTCTTTGTTCT+TGG - 14719:5685-5704 None:intergenic 35.0%
GACAGGCTGTATAATTACAA+TGG + 14719:5595-5614 MS.gene001264:CDS 35.0%
GAGGATTTGTACTAATTGAC+AGG + 14719:5083-5102 MS.gene001264:CDS 35.0%
GATACATACTGTGAGGTTAA+TGG + 14719:4697-4716 MS.gene001264:intron 35.0%
GCTCAATCCATGTTCAAAAT+GGG + 14719:5889-5908 MS.gene001264:CDS 35.0%
TATGACAACACTCTTAGGTA+AGG + 14719:5458-5477 MS.gene001264:intron 35.0%
TGCATGTTTCATATCAACAC+AGG + 14719:5532-5551 MS.gene001264:intron 35.0%
TGCTCAATCCATGTTCAAAA+TGG + 14719:5888-5907 MS.gene001264:CDS 35.0%
TTGTCCTTTCTTTGTTCTTG+GGG - 14719:5683-5702 None:intergenic 35.0%
TTTAACAGGAAATCAAGGAG+AGG + 14719:5924-5943 MS.gene001264:CDS 35.0%
! AATGGTTGAAGGGAACTTTT+AGG + 14719:4715-4734 MS.gene001264:intron 35.0%
! ATGTAATCTTTTCCAGAGTC+TGG - 14719:5730-5749 None:intergenic 35.0%
! CTGCTGGATTTGAAGATTTT+AGG + 14719:5857-5876 MS.gene001264:CDS 35.0%
! GTTCATGAGGTTTAAAGCAT+AGG + 14719:4896-4915 MS.gene001264:intron 35.0%
! TATTTGTGTATCGACAACTC+CGG - 14719:5954-5973 None:intergenic 35.0%
! TGTAATCTTTTCCAGAGTCT+GGG - 14719:5729-5748 None:intergenic 35.0%
!! GAAGGGAACTTTTAGGTAAT+AGG + 14719:4722-4741 MS.gene001264:intron 35.0%
AAATCCAGCAGCAAATTCCT+CGG - 14719:5848-5867 None:intergenic 40.0%
ACTGTGAGGTTAATGGTTGA+AGG + 14719:4704-4723 MS.gene001264:intron 40.0%
ATATACTCCATCTTGCAGCT+AGG + 14719:5155-5174 MS.gene001264:CDS 40.0%
ATTGTAGCCACATTGTTGAC+AGG + 14719:5578-5597 MS.gene001264:CDS 40.0%
CAATGTGGCTACAATGTGTT+TGG - 14719:5573-5592 None:intergenic 40.0%
CTGTGAGGTTAATGGTTGAA+GGG + 14719:4705-4724 MS.gene001264:intron 40.0%
GAAAAGTAGCATCCATGCTT+GGG - 14719:5636-5655 None:intergenic 40.0%
GAGAATTAATGTCAACAGGC+CGG + 14719:5297-5316 MS.gene001264:intron 40.0%
GATCCCAATGAATCTTCACT+TGG - 14719:4533-4552 None:intergenic 40.0%
GCACCAAGTGAAGATTCATT+GGG + 14719:4527-4546 MS.gene001264:CDS 40.0%
GCATCAATACTGCTTGATGA+AGG + 14719:5019-5038 MS.gene001264:CDS 40.0%
GTAAACCAAGCGTAGTAACT+TGG - 14719:4574-4593 None:intergenic 40.0%
TAGTGATGCCATTGCAACTT+TGG - 14719:4471-4490 None:intergenic 40.0%
TATACAGCCTGTCAACAATG+TGG - 14719:5588-5607 None:intergenic 40.0%
TATACTCCATCTTGCAGCTA+GGG + 14719:5156-5175 MS.gene001264:CDS 40.0%
TCCTTTCTTCCTGTGAAAAC+TGG - 14719:5336-5355 None:intergenic 40.0%
TGACAGGATCAAAACTGTTC+TGG + 14719:5099-5118 MS.gene001264:CDS 40.0%
TGTCCTTTCTTTGTTCTTGG+GGG - 14719:5682-5701 None:intergenic 40.0%
! AAATCGTTGTTTCGTGGCAT+AGG + 14719:4988-5007 MS.gene001264:intron 40.0%
! AATCGTTGTTTCGTGGCATA+GGG + 14719:4989-5008 MS.gene001264:intron 40.0%
! GTAATTGTTGATCGATTCCC+AGG - 14719:5798-5817 None:intergenic 40.0%
! GTTTTCACAGGAAGAAAGGA+TGG + 14719:5336-5355 MS.gene001264:CDS 40.0%
! TCCAGTTTTCACAGGAAGAA+AGG + 14719:5332-5351 MS.gene001264:CDS 40.0%
!! AAAAAAGAGCACCACAGAAC+CGG + 14719:5053-5072 MS.gene001264:CDS 40.0%
!! AATGAATCTTCACTTGGTGC+CGG - 14719:4527-4546 None:intergenic 40.0%
!! TACTTTTCGAGACACGTTGA+GGG + 14719:5648-5667 MS.gene001264:CDS 40.0%
!!! GGTGCTCTTTTTTCTGGATT+TGG - 14719:5046-5065 None:intergenic 40.0%
!!! TTCTGTGGTGCTCTTTTTTC+TGG - 14719:5052-5071 None:intergenic 40.0%
AAGATGGAGTATATCAGCGC+AGG - 14719:5149-5168 None:intergenic 45.0%
AGCTAGGGATGCTGCTAAAA+TGG + 14719:5171-5190 MS.gene001264:CDS 45.0%
CCTGTGAAAACTGGATAACC+TGG - 14719:5327-5346 None:intergenic 45.0%
CGAAAAGTAGCATCCATGCT+TGG - 14719:5637-5656 None:intergenic 45.0%
CTCCAAAGCCAAAGTTGCAA+TGG + 14719:4460-4479 MS.gene001264:CDS 45.0%
CTGGGTTTAGGTATACCAGT+GGG - 14719:5711-5730 None:intergenic 45.0%
GGCACCAAGTGAAGATTCAT+TGG + 14719:4526-4545 MS.gene001264:CDS 45.0%
GTATACCTAAACCCAGACTC+TGG + 14719:5715-5734 MS.gene001264:CDS 45.0%
TACTGCCAAGTTACTACGCT+TGG + 14719:4566-4585 MS.gene001264:CDS 45.0%
TAGAGATTCCTGCCATGAGA+TGG - 14719:5403-5422 None:intergenic 45.0%
TCTGGGTTTAGGTATACCAG+TGG - 14719:5712-5731 None:intergenic 45.0%
TGACACTAAAGAGATCACCG+AGG + 14719:5828-5847 MS.gene001264:CDS 45.0%
TGTCCCCCAAGAACAAAGAA+AGG + 14719:5676-5695 MS.gene001264:CDS 45.0%
! CCAGGTTATCCAGTTTTCAC+AGG + 14719:5324-5343 MS.gene001264:CDS 45.0%
! CTTTTCCAGAGTCTGGGTTT+AGG - 14719:5723-5742 None:intergenic 45.0%
! TGCCATTGCAACTTTGGCTT+TGG - 14719:4465-4484 None:intergenic 45.0%
!! AAAAAGAGCACCACAGAACC+GGG + 14719:5054-5073 MS.gene001264:CDS 45.0%
!! ACTTTTCGAGACACGTTGAG+GGG + 14719:5649-5668 MS.gene001264:CDS 45.0%
!! CTACTTTTCGAGACACGTTG+AGG + 14719:5647-5666 MS.gene001264:CDS 45.0%
!! TTATAAAATAAAATAAAATG+GGG - 14719:4621-4640 None:intergenic 5.0%
AACTGGATAACCTGGTGCAC+CGG - 14719:5319-5338 None:intergenic 50.0%
ATCACCATCCATCTCATGGC+AGG + 14719:5392-5411 MS.gene001264:CDS 50.0%
ATTTGCGGAGGGGATACTGA+AGG - 14719:5226-5245 None:intergenic 50.0%
GATTCCTGCCATGAGATGGA+TGG - 14719:5399-5418 None:intergenic 50.0%
TGCCATCACCATCCATCTCA+TGG + 14719:5388-5407 MS.gene001264:CDS 50.0%
TGCCATGAGATGGATGGTGA+TGG - 14719:5393-5412 None:intergenic 50.0%
TGGAAACTCAGACCCAAGCA+TGG + 14719:5621-5640 MS.gene001264:CDS 50.0%
! AACACAGGAGCACACACACT+AGG + 14719:5547-5566 MS.gene001264:intron 50.0%
! GAAATCAAGGAGAGGTACGC+CGG + 14719:5932-5951 MS.gene001264:CDS 50.0%
!! AAAAGAGCACCACAGAACCG+GGG + 14719:5055-5074 MS.gene001264:CDS 50.0%
!! ATCACCGAGGAATTTGCTGC+TGG + 14719:5841-5860 MS.gene001264:CDS 50.0%
!! ATGAGATGGATGGTGATGGC+AGG - 14719:5389-5408 None:intergenic 50.0%
CAGCATCCCTAGCTGCAAGA+TGG - 14719:5165-5184 None:intergenic 55.0%
CAGCGCAGGAGACAATTCCA+GGG - 14719:5135-5154 None:intergenic 55.0%
CTGCGCAATGAAGCTGTCCT+GGG + 14719:5778-5797 MS.gene001264:CDS 55.0%
GAAAGGACAAAGCGACCCAC+TGG + 14719:5693-5712 MS.gene001264:CDS 55.0%
GTACAAATCCTCCAAGCCCC+CGG - 14719:5075-5094 None:intergenic 55.0%
TCAGCGCAGGAGACAATTCC+AGG - 14719:5136-5155 None:intergenic 55.0%
! GCAGTGTTGAGCTTGTGCCA+TGG + 14719:4423-4442 MS.gene001264:CDS 55.0%
!! AAAGAGCACCACAGAACCGG+GGG + 14719:5056-5075 MS.gene001264:CDS 55.0%
!! GTTCTGGAATCACGATGCCC+TGG + 14719:5115-5134 MS.gene001264:CDS 55.0%
CAATGTATGCCGCGACGCAG+AGG + 14719:4494-4513 MS.gene001264:CDS 60.0%
CCAGGACAGCTTCATTGCGC+AGG - 14719:5780-5799 None:intergenic 60.0%
CCTGCGCAATGAAGCTGTCC+TGG + 14719:5777-5796 MS.gene001264:CDS 60.0%
GGACATACACCTCTGCGTCG+CGG - 14719:4506-4525 None:intergenic 60.0%
! GCGACGCAGAGGTGTATGTC+CGG + 14719:4505-4524 MS.gene001264:CDS 60.0%
GAGCTGCTGCTGCTGCTCCA+TGG - 14719:4443-4462 None:intergenic 65.0%
TGTCAACAGGCCGGTGCACC+AGG + 14719:5306-5325 MS.gene001264:intron 65.0%
CCACAGAACCGGGGGCTTGG+AGG + 14719:5064-5083 MS.gene001264:CDS 70.0%
CCTCCAAGCCCCCGGTTCTG+TGG - 14719:5067-5086 None:intergenic 70.0%
GCACCACAGAACCGGGGGCT+TGG + 14719:5061-5080 MS.gene001264:CDS 70.0%


Chromosome Type Strat End Strand Name
14719 gene 4378 5978 4378 ID=MS.gene001264
14719 mRNA 4378 5978 4378 ID=MS.gene001264.t1;Parent=MS.gene001264
14719 exon 4378 4611 4378 ID=MS.gene001264.t1.exon1;Parent=MS.gene001264.t1
14719 CDS 4378 4611 4378 ID=cds.MS.gene001264.t1;Parent=MS.gene001264.t1
14719 exon 5010 5192 5010 ID=MS.gene001264.t1.exon2;Parent=MS.gene001264.t1
14719 CDS 5010 5192 5010 ID=cds.MS.gene001264.t1;Parent=MS.gene001264.t1
14719 exon 5315 5474 5315 ID=MS.gene001264.t1.exon3;Parent=MS.gene001264.t1
14719 CDS 5315 5474 5315 ID=cds.MS.gene001264.t1;Parent=MS.gene001264.t1
14719 exon 5554 5978 5554 ID=MS.gene001264.t1.exon4;Parent=MS.gene001264.t1
14719 CDS 5554 5978 5554 ID=cds.MS.gene001264.t1;Parent=MS.gene001264.t1
Gene Sequence

>MS.gene001264

ATGGGTAGACTTATGTATGTGGCTTTCCCACTAATAATAGCTTTTGCAGTGTTGAGCTTGTGCCATGGAGCAGCAGCAGCAGCTCCAAAGCCAAAGTTGCAATGGCATCACTATCACAATGTATGCCGCGACGCAGAGGTGTATGTCCGGCACCAAGTGAAGATTCATTGGGATCAAGACAAAAGCATTACTGCCAAGTTACTACGCTTGGTTTACACCGACTGTTTTGTCAATGTATGTCCCCATTTTATTTTATTTTATAATTTGGTACTAGCTAATCTTCTCTTTTTTCCATTTTTCAACTTTTTAAGCTAAGAAAGATACATACTGTGAGGTTAATGGTTGAAGGGAACTTTTAGGTAATAGGACTATGAACAACTAAAGGACAGGTTACAAAAACAGCAGACCCTCTGAAACTAAAATATATTCAAGTTGCACTCAGAAATATATAGTCGAAACTCGAACACTCTTTGTTGTACAATCTAAATTCAGTTGTTCCATTTAACTTAGTATATAGAGTTCATGAGGTTTAAAGCATAGGATTCCATTTAAACTTACCATTCTAAACATTATAAATGAATAAAATTTGTTTTTCTTTCTCCTGAAACTTAAATCGTTGTTTCGTGGCATAGGGTTGTGATGCATCAATACTGCTTGATGAAGGACCAAATCCAGAAAAAAGAGCACCACAGAACCGGGGGCTTGGAGGATTTGTACTAATTGACAGGATCAAAACTGTTCTGGAATCACGATGCCCTGGAATTGTCTCCTGCGCTGATATACTCCATCTTGCAGCTAGGGATGCTGCTAAAATGGTATTCTTTCAACTAGTCTACTTACAATTTCCTTCAGTATCCCCTCCGCAAATAAAATCTTATCTCAAGGTAGGGGTAAAAGTTAAAAAAACAGTAACCGATTTGAGAATTAATGTCAACAGGCCGGTGCACCAGGTTATCCAGTTTTCACAGGAAGAAAGGATGGCATGAAATCAGATGCTGCATCAGTAGACCTGCCATCACCATCCATCTCATGGCAGGAATCTCTAGCATACTTTAAATCAAGGGGACTGGACGTATTAGATATGACAACACTCTTAGGTAAGGCAAGATTACAATCAAAAAGAAATTACATACCAACAATATGTTCTAAATGGGTGCATGTTTCATATCAACACAGGAGCACACACACTAGGCCAAACACATTGTAGCCACATTGTTGACAGGCTGTATAATTACAATGGTACTGGAAACTCAGACCCAAGCATGGATGCTACTTTTCGAGACACGTTGAGGGGACTTTGTCCCCCAAGAACAAAGAAAGGACAAAGCGACCCACTGGTATACCTAAACCCAGACTCTGGAAAAGATTACATCTTCAGAGAATCATACTATAAAAGGATCCTGCGCAATGAAGCTGTCCTGGGAATCGATCAACAATTACTATTTGGTGATGACACTAAAGAGATCACCGAGGAATTTGCTGCTGGATTTGAAGATTTTAGGAGATCTTTTGCTCAATCCATGTTCAAAATGGGAAATATCAAAGTTTTAACAGGAAATCAAGGAGAGGTACGCCGGAGTTGTCGATACACAAATAAGTGA
Protein sequence

>MS.gene001264.t1

MGRLMYVAFPLIIAFAVLSLCHGAAAAAPKPKLQWHHYHNVCRDAEVYVRHQVKIHWDQDKSITAKLLRLVYTDCFVNGCDASILLDEGPNPEKRAPQNRGLGGFVLIDRIKTVLESRCPGIVSCADILHLAARDAAKMAGAPGYPVFTGRKDGMKSDAASVDLPSPSISWQESLAYFKSRGLDVLDMTTLLGAHTLGQTHCSHIVDRLYNYNGTGNSDPSMDATFRDTLRGLCPPRTKKGQSDPLVYLNPDSGKDYIFRESYYKRILRNEAVLGIDQQLLFGDDTKEITEEFAAGFEDFRRSFAQSMFKMGNIKVLTGNQGEVRRSCRYTNK