AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52672

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52672.t1 MTR_7g093370 96.353 329 12 0 1 329 45 373 0.0 645
MS.gene52672.t1 MTR_1g054205 76.292 329 77 1 1 329 1 328 0.0 509
MS.gene52672.t1 MTR_2g029815 61.562 320 118 2 8 327 16 330 9.10e-137 392
MS.gene52672.t1 MTR_2g029830 61.564 307 117 1 21 327 24 329 1.79e-132 381
MS.gene52672.t1 MTR_2g029820 59.935 307 122 1 21 327 25 330 2.54e-132 381
MS.gene52672.t1 MTR_2g029860 59.006 322 128 2 10 328 11 331 4.39e-130 375
MS.gene52672.t1 MTR_2g029800 57.012 328 138 2 2 327 4 330 6.09e-130 375
MS.gene52672.t1 MTR_2g028980 57.895 323 135 1 5 327 9 330 2.26e-127 368
MS.gene52672.t1 MTR_2g029850 60.065 308 122 1 21 328 25 331 5.52e-127 367
MS.gene52672.t1 MTR_2g029560 58.147 313 130 1 16 328 15 326 4.35e-126 365
MS.gene52672.t1 MTR_2g029750 58.632 307 126 1 21 327 25 330 5.72e-126 365
MS.gene52672.t1 MTR_2g029740 57.655 307 129 1 21 327 25 330 2.84e-124 360
MS.gene52672.t1 MTR_4g125940 55.183 328 142 2 2 327 5 329 4.94e-124 359
MS.gene52672.t1 MTR_2g040000 55.247 324 136 3 10 327 11 331 9.85e-122 353
MS.gene52672.t1 MTR_2g029910 55.927 329 141 3 2 327 5 332 1.91e-121 353
MS.gene52672.t1 MTR_2g029730 56.869 313 134 1 16 328 16 327 3.90e-120 350
MS.gene52672.t1 MTR_3g094650 55.108 323 132 6 8 327 10 322 2.28e-118 344
MS.gene52672.t1 MTR_3g094670 55.763 321 130 5 9 327 12 322 1.95e-114 334
MS.gene52672.t1 MTR_5g021060 53.135 303 140 2 25 327 30 330 5.19e-114 333
MS.gene52672.t1 MTR_3g094630 55.140 321 132 5 9 327 12 322 2.07e-111 327
MS.gene52672.t1 MTR_4g125940 58.696 276 109 2 54 327 2 274 5.68e-110 321
MS.gene52672.t1 MTR_8g076820 52.145 303 143 2 25 327 30 330 1.02e-109 323
MS.gene52672.t1 MTR_5g017850 52.500 320 147 4 9 327 11 326 2.52e-109 321
MS.gene52672.t1 MTR_2g029830 61.089 257 99 1 71 327 6 261 1.75e-108 318
MS.gene52672.t1 MTR_3g466200 51.220 328 146 7 3 327 4 320 4.41e-108 318
MS.gene52672.t1 MTR_5g017860 52.215 316 145 5 13 327 16 326 4.39e-106 313
MS.gene52672.t1 MTR_5g083860 49.062 320 151 5 10 327 16 325 1.08e-105 312
MS.gene52672.t1 MTR_2g084080 49.846 325 151 5 5 327 3 317 2.91e-105 311
MS.gene52672.t1 MTR_3g072190 49.231 325 148 4 10 327 4 318 3.95e-105 310
MS.gene52672.t1 MTR_2g084020 49.231 325 154 5 5 327 3 318 2.52e-102 303
MS.gene52672.t1 MTR_5g074970 48.607 323 150 6 10 327 15 326 5.84e-102 303
MS.gene52672.t1 MTR_2g084000 47.678 323 158 4 6 327 7 319 8.63e-102 302
MS.gene52672.t1 MTR_2g084110 50.000 326 149 6 5 327 3 317 1.83e-101 301
MS.gene52672.t1 MTR_4g029170 47.432 331 160 6 1 327 1 321 3.71e-101 300
MS.gene52672.t1 MTR_2g084010 49.837 307 145 3 21 327 21 318 4.98e-101 300
MS.gene52672.t1 MTR_4g083710 48.598 321 154 4 10 327 12 324 5.09e-101 300
MS.gene52672.t1 MTR_7g072510 45.768 319 163 3 9 327 4 312 7.95e-99 294
MS.gene52672.t1 MTR_2g084090 48.750 320 152 5 10 327 9 318 1.02e-98 294
MS.gene52672.t1 MTR_1g022970 48.185 303 156 1 25 327 46 347 1.01e-96 290
MS.gene52672.t1 MTR_5g074740 45.988 324 163 5 7 327 7 321 3.05e-96 288
MS.gene52672.t1 MTR_5g074760 45.679 324 164 5 7 327 7 321 3.48e-96 288
MS.gene52672.t1 MTR_4g029200 46.057 317 161 3 11 327 32 338 2.14e-95 286
MS.gene52672.t1 MTR_5g014100 48.208 307 154 3 25 327 26 331 5.85e-95 285
MS.gene52672.t1 MTR_5g074710 45.794 321 162 5 10 327 10 321 6.14e-95 285
MS.gene52672.t1 MTR_5g074860 46.154 325 159 6 9 326 9 324 7.15e-94 282
MS.gene52672.t1 MTR_4g074995 47.368 323 142 6 10 327 9 308 1.32e-93 281
MS.gene52672.t1 MTR_7g072480 47.152 316 157 3 12 327 11 316 1.36e-93 281
MS.gene52672.t1 MTR_1g115900 44.753 324 166 6 6 327 9 321 1.37e-93 281
MS.gene52672.t1 MTR_4g031140 43.827 324 171 5 10 328 8 325 6.47e-93 280
MS.gene52672.t1 MTR_4g029180 47.841 301 145 5 29 327 31 321 1.64e-92 278
MS.gene52672.t1 MTR_4g030890 45.928 307 160 4 21 327 96 396 2.84e-92 281
MS.gene52672.t1 MTR_4g122640 46.205 303 159 3 25 327 38 336 5.19e-92 278
MS.gene52672.t1 MTR_3g466180 45.912 318 162 3 10 327 16 323 2.62e-90 273
MS.gene52672.t1 MTR_3g467600 44.308 325 170 4 6 327 8 324 2.06e-89 271
MS.gene52672.t1 MTR_4g074990 44.343 327 152 5 7 327 3 305 5.04e-88 266
MS.gene52672.t1 MTR_4g046713 41.159 328 188 4 1 327 3 326 7.81e-88 266
MS.gene52672.t1 MTR_2g088770 44.237 321 171 6 10 327 10 325 1.30e-87 266
MS.gene52672.t1 MTR_3g092990 42.154 325 178 4 7 327 8 326 2.90e-87 265
MS.gene52672.t1 MTR_5g049280 41.916 334 185 7 1 327 6 337 6.67e-87 265
MS.gene52672.t1 MTR_3g072190 50.769 260 118 3 68 327 2 251 2.93e-86 260
MS.gene52672.t1 MTR_4g114210 45.338 311 155 6 23 327 19 320 4.97e-86 262
MS.gene52672.t1 MTR_7g107520 43.653 323 174 6 6 327 5 320 3.87e-85 259
MS.gene52672.t1 MTR_4g029190 44.231 312 166 4 16 327 37 340 3.57e-84 258
MS.gene52672.t1 MTR_7g086820 43.607 305 162 6 23 327 18 312 4.87e-84 256
MS.gene52672.t1 MTR_0155s0040 43.974 307 154 8 23 327 25 315 3.63e-83 254
MS.gene52672.t1 MTR_5g022870 42.587 317 170 9 12 327 11 316 1.30e-81 250
MS.gene52672.t1 MTR_2g008710 42.943 333 176 7 1 327 1 325 1.54e-81 250
MS.gene52672.t1 MTR_6g027440 43.438 320 171 8 9 327 4 314 1.06e-80 248
MS.gene52672.t1 MTR_1g077000 40.867 323 177 6 5 327 19 327 1.22e-79 246
MS.gene52672.t1 MTR_1g101830 41.358 324 179 7 5 327 9 322 1.63e-79 245
MS.gene52672.t1 MTR_2g099175 41.424 309 168 6 24 327 35 335 2.01e-79 245
MS.gene52672.t1 MTR_1g009750 42.415 323 178 5 10 327 9 328 5.36e-79 244
MS.gene52672.t1 MTR_7g026990 40.867 323 179 5 7 328 12 323 8.72e-79 243
MS.gene52672.t1 MTR_8g075100 43.092 304 162 8 25 327 26 319 1.78e-78 243
MS.gene52672.t1 MTR_4g074980 43.260 319 147 6 10 327 9 294 1.45e-77 239
MS.gene52672.t1 MTR_3g092990 40.308 325 173 5 7 327 8 315 1.90e-76 237
MS.gene52672.t1 MTR_7g029030 41.195 318 176 5 12 327 12 320 1.83e-75 235
MS.gene52672.t1 MTR_1g025980 40.625 320 180 7 5 323 4 314 2.05e-74 232
MS.gene52672.t1 MTR_4g127670 42.857 308 165 4 24 327 23 323 2.18e-74 232
MS.gene52672.t1 MTR_4g087965 38.529 340 187 7 3 323 6 342 2.78e-74 233
MS.gene52672.t1 MTR_2g437770 41.503 306 164 9 25 328 50 342 4.00e-74 232
MS.gene52672.t1 MTR_4g133800 41.472 299 163 6 30 327 46 333 4.92e-74 231
MS.gene52672.t1 MTR_5g074860 41.411 326 136 7 9 327 9 286 6.49e-74 229
MS.gene52672.t1 MTR_6g043280 39.583 336 180 8 2 327 10 332 7.68e-74 231
MS.gene52672.t1 MTR_4g074980 47.619 252 121 4 10 257 9 253 1.28e-73 228
MS.gene52672.t1 MTR_2g067440 39.104 335 169 7 25 329 60 389 5.68e-73 231
MS.gene52672.t1 MTR_5g016010 39.062 320 187 5 8 323 10 325 5.11e-72 226
MS.gene52672.t1 MTR_1g086320 39.640 333 187 7 6 327 4 333 5.14e-72 226
MS.gene52672.t1 MTR_2g078610 38.739 333 170 6 25 326 76 405 5.77e-72 229
MS.gene52672.t1 MTR_2g077990 38.739 333 170 6 25 326 76 405 1.26e-71 228
MS.gene52672.t1 MTR_7g086870 40.196 306 168 7 23 327 20 311 1.29e-70 222
MS.gene52672.t1 MTR_1g038680 39.934 303 175 5 29 327 33 332 3.29e-70 222
MS.gene52672.t1 MTR_1g086490 38.824 340 187 8 6 327 4 340 4.21e-70 222
MS.gene52672.t1 MTR_4g095450 40.810 321 175 7 9 323 9 320 9.74e-70 220
MS.gene52672.t1 MTR_1g090760 36.890 328 203 3 2 327 5 330 3.51e-69 219
MS.gene52672.t1 MTR_6g043240 40.836 311 167 7 20 328 37 332 1.20e-68 218
MS.gene52672.t1 MTR_1g009750 39.564 321 173 6 10 327 9 311 4.55e-68 216
MS.gene52672.t1 MTR_2g008160 39.683 315 177 7 18 327 17 323 7.61e-68 215
MS.gene52672.t1 MTR_2g078280 38.558 319 162 6 25 312 76 391 8.11e-67 215
MS.gene52672.t1 MTR_2g008730 39.692 325 158 7 9 327 9 301 1.94e-66 211
MS.gene52672.t1 MTR_8g062780 37.695 321 195 4 9 327 7 324 3.07e-66 211
MS.gene52672.t1 MTR_5g033470 36.538 312 190 5 21 327 69 377 5.07e-65 210
MS.gene52672.t1 MTR_2g067450 39.159 309 171 6 25 326 11 309 4.67e-64 205
MS.gene52672.t1 MTR_2g029880 54.737 190 76 2 138 327 9 188 3.93e-62 197
MS.gene52672.t1 MTR_3g105790 37.888 322 189 5 9 327 9 322 3.26e-61 198
MS.gene52672.t1 MTR_1g066710 36.570 309 184 6 23 328 25 324 3.46e-61 198
MS.gene52672.t1 MTR_6g043460 39.088 307 171 8 20 323 31 324 1.32e-60 197
MS.gene52672.t1 MTR_0286s0010 35.692 325 199 6 6 327 17 334 1.88e-59 194
MS.gene52672.t1 MTR_6g008075 35.692 325 199 6 6 327 17 334 1.88e-59 194
MS.gene52672.t1 MTR_1g066680 36.102 313 187 7 19 328 21 323 3.10e-58 191
MS.gene52672.t1 MTR_0147s0010 33.540 322 177 5 25 326 77 381 8.15e-58 191
MS.gene52672.t1 MTR_1g066380 35.599 309 187 6 23 328 25 324 9.83e-58 189
MS.gene52672.t1 MTR_1g066640 35.922 309 186 6 23 328 25 324 5.34e-57 187
MS.gene52672.t1 MTR_4g132490 35.082 305 192 4 24 327 28 327 2.15e-56 186
MS.gene52672.t1 MTR_4g132110 34.653 303 184 6 25 323 32 324 8.61e-55 182
MS.gene52672.t1 MTR_4g132110 35.390 308 180 8 25 323 32 329 4.82e-54 180
MS.gene52672.t1 MTR_5g074700 41.810 232 110 5 99 327 5 214 2.92e-52 172
MS.gene52672.t1 MTR_3g072210 45.833 192 95 3 137 327 55 238 7.39e-51 169
MS.gene52672.t1 MTR_2g008160 34.921 315 157 7 18 327 17 288 1.03e-50 170
MS.gene52672.t1 MTR_1g066380 35.741 263 157 6 69 328 3 256 5.76e-46 157
MS.gene52672.t1 MTR_2g008160 44.253 174 92 3 18 191 17 185 2.51e-42 145
MS.gene52672.t1 MTR_3g105790 36.653 251 149 4 80 327 3 246 2.76e-39 139
MS.gene52672.t1 MTR_3g072260 60.909 110 42 1 24 133 25 133 2.21e-38 133
MS.gene52672.t1 MTR_7g072490 36.800 250 94 5 71 320 2 187 1.75e-35 128
MS.gene52672.t1 MTR_2g077980 30.216 278 150 7 88 326 11 283 2.38e-35 130
MS.gene52672.t1 MTR_2g078560 31.818 220 117 4 135 323 99 316 1.66e-32 123
MS.gene52672.t1 MTR_7g086790 36.316 190 98 5 72 261 17 183 7.64e-27 105
MS.gene52672.t1 MTR_5g058120 37.654 162 88 3 162 323 7 155 3.14e-25 102
MS.gene52672.t1 MTR_4g031040 34.483 174 70 3 86 259 2 131 1.03e-21 89.7
MS.gene52672.t1 MTR_3g462850 36.620 142 85 5 190 327 9 149 8.70e-21 87.4
MS.gene52672.t1 MTR_1g098320 50.000 76 36 1 248 323 47 120 8.86e-20 84.7
MS.gene52672.t1 MTR_6g048160 56.944 72 26 2 64 135 22 88 2.25e-18 79.3
MS.gene52672.t1 MTR_4g114220 49.412 85 32 2 51 135 29 102 9.74e-18 79.0
MS.gene52672.t1 MTR_5g074770 40.860 93 54 1 234 326 17 108 1.28e-17 77.8
MS.gene52672.t1 MTR_1g089005 39.496 119 64 3 25 137 15 131 1.45e-16 76.3
MS.gene52672.t1 MTR_2g029930 45.631 103 27 4 21 109 15 102 8.96e-16 72.4
MS.gene52672.t1 MTR_7g086810 32.520 123 56 1 21 143 2 97 1.29e-15 75.5
MS.gene52672.t1 MTR_7g107500 46.429 84 42 2 244 327 17 97 5.77e-14 67.4
MS.gene52672.t1 MTR_7g086785 34.722 144 74 5 71 205 4 136 1.24e-13 67.4
MS.gene52672.t1 MTR_4g012865 43.478 69 38 1 25 93 77 144 1.47e-13 67.8
MS.gene52672.t1 MTR_3g107060 26.667 255 136 8 57 308 106 312 1.85e-13 70.5
MS.gene52672.t1 MTR_3g088160 27.500 200 111 7 119 309 180 354 6.62e-13 69.3
MS.gene52672.t1 MTR_3g088160 27.500 200 111 7 119 309 180 354 7.88e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52672.t1 AT5G06720 70.606 330 92 2 4 329 7 335 2.27e-167 469
MS.gene52672.t1 AT5G06730 68.421 323 101 1 6 328 14 335 3.18e-158 447
MS.gene52672.t1 AT2G38380 55.723 332 140 5 2 327 3 333 1.96e-124 360
MS.gene52672.t1 AT5G19880 55.140 321 140 3 9 327 11 329 7.99e-124 358
MS.gene52672.t1 AT2G38390 55.519 308 135 2 21 327 27 333 9.52e-123 356
MS.gene52672.t1 AT4G08780 55.016 309 136 3 21 327 20 327 9.28e-122 354
MS.gene52672.t1 AT3G32980 55.215 326 142 4 5 327 10 334 1.49e-121 353
MS.gene52672.t1 AT4G08770 55.016 309 136 3 21 327 20 327 1.09e-119 348
MS.gene52672.t1 AT3G49110 54.462 325 140 4 10 327 13 336 2.23e-118 345
MS.gene52672.t1 AT3G49120 54.154 325 144 4 7 327 12 335 3.19e-118 345
MS.gene52672.t1 AT5G19890 54.103 329 140 5 1 327 8 327 5.16e-117 341
MS.gene52672.t1 AT5G66390 52.443 307 144 2 21 327 29 333 5.47e-115 336
MS.gene52672.t1 AT2G18150 54.153 301 136 2 29 329 40 338 2.44e-114 335
MS.gene52672.t1 AT4G36430 53.443 305 140 2 23 327 28 330 5.80e-114 333
MS.gene52672.t1 AT2G18140 53.488 301 138 2 29 329 39 337 2.38e-113 332
MS.gene52672.t1 AT3G50990 51.140 307 148 2 21 327 37 341 8.36e-110 323
MS.gene52672.t1 AT5G05340 51.948 308 136 5 22 327 27 324 5.59e-106 313
MS.gene52672.t1 AT1G44970 50.654 306 150 1 22 327 42 346 2.29e-102 304
MS.gene52672.t1 AT1G49570 49.669 302 146 4 25 323 48 346 1.76e-99 297
MS.gene52672.t1 AT2G35380 51.140 307 145 4 25 327 30 335 7.12e-99 295
MS.gene52672.t1 AT5G58390 49.379 322 150 6 9 327 5 316 5.15e-97 290
MS.gene52672.t1 AT1G14550 45.652 322 166 4 7 327 8 321 3.00e-96 288
MS.gene52672.t1 AT5G58400 47.988 323 153 7 10 327 13 325 6.55e-96 287
MS.gene52672.t1 AT1G14540 45.652 322 165 4 8 327 2 315 5.81e-93 279
MS.gene52672.t1 AT2G22420 43.168 322 171 5 6 327 10 319 1.57e-91 276
MS.gene52672.t1 AT5G17820 44.304 316 163 5 12 327 11 313 5.53e-91 274
MS.gene52672.t1 AT5G17820 44.304 316 163 5 12 327 64 366 8.28e-90 273
MS.gene52672.t1 AT3G03670 45.938 320 167 4 10 327 6 321 5.45e-89 270
MS.gene52672.t1 AT1G68850 42.598 331 180 9 5 327 7 335 5.98e-89 270
MS.gene52672.t1 AT4G16270 45.667 300 157 5 29 327 54 348 1.81e-87 266
MS.gene52672.t1 AT5G64120 47.157 299 149 6 29 327 39 328 3.34e-86 263
MS.gene52672.t1 AT3G21770 43.548 310 166 6 17 323 21 324 2.43e-85 260
MS.gene52672.t1 AT2G18980 43.692 325 171 5 7 327 7 323 4.25e-84 257
MS.gene52672.t1 AT2G41480 42.813 327 173 7 7 327 10 328 5.65e-84 257
MS.gene52672.t1 AT5G39580 47.335 319 156 9 12 327 10 319 3.04e-83 254
MS.gene52672.t1 AT4G11290 42.679 321 179 4 9 327 9 326 5.06e-83 254
MS.gene52672.t1 AT1G05260 41.796 323 177 7 10 327 9 325 3.72e-82 252
MS.gene52672.t1 AT4G30170 43.042 309 164 5 23 327 25 325 1.22e-80 248
MS.gene52672.t1 AT3G01190 41.693 319 177 6 9 327 12 321 3.12e-80 247
MS.gene52672.t1 AT5G15180 39.319 323 187 6 9 327 12 329 1.14e-79 246
MS.gene52672.t1 AT4G25980 41.562 320 175 5 13 327 14 326 5.95e-79 244
MS.gene52672.t1 AT4G37530 43.689 309 168 4 18 323 20 325 2.58e-78 243
MS.gene52672.t1 AT1G77100 42.154 325 173 6 8 327 5 319 5.45e-77 239
MS.gene52672.t1 AT5G51890 39.319 323 186 7 6 327 9 322 6.31e-77 239
MS.gene52672.t1 AT5G42180 41.066 319 177 8 9 326 8 316 6.58e-77 238
MS.gene52672.t1 AT5G14130 40.000 325 189 4 4 327 11 330 1.38e-76 238
MS.gene52672.t1 AT5G14130 40.000 325 189 4 4 327 52 371 2.94e-76 238
MS.gene52672.t1 AT3G49960 43.038 316 172 6 12 323 14 325 3.43e-76 237
MS.gene52672.t1 AT1G71695 42.903 310 166 6 20 327 39 339 1.60e-75 236
MS.gene52672.t1 AT2G39040 41.987 312 171 6 22 327 43 350 8.57e-75 234
MS.gene52672.t1 AT4G37520 41.447 304 172 4 23 323 25 325 1.30e-74 233
MS.gene52672.t1 AT4G33420 42.071 309 164 7 20 327 31 325 3.55e-74 232
MS.gene52672.t1 AT1G05240 39.799 299 169 5 29 323 30 321 5.29e-74 231
MS.gene52672.t1 AT1G05250 39.799 299 169 5 29 323 30 321 5.29e-74 231
MS.gene52672.t1 AT4G33420 42.071 309 164 7 20 327 78 372 1.46e-73 232
MS.gene52672.t1 AT5G64110 41.337 329 176 7 7 327 11 330 1.73e-73 230
MS.gene52672.t1 AT2G43480 39.185 319 178 8 16 327 26 335 2.26e-73 230
MS.gene52672.t1 AT2G35380 50.813 246 117 3 86 327 2 247 3.45e-73 226
MS.gene52672.t1 AT5G64100 41.667 300 165 6 29 327 41 331 1.65e-72 228
MS.gene52672.t1 AT2G34060 38.762 307 182 5 22 324 39 343 2.62e-72 228
MS.gene52672.t1 AT4G37520 40.789 304 171 5 23 323 25 322 5.99e-72 226
MS.gene52672.t1 AT5G67400 40.673 327 184 8 2 323 4 325 1.73e-71 225
MS.gene52672.t1 AT5G24070 39.937 318 174 9 18 328 29 336 3.97e-71 224
MS.gene52672.t1 AT4G33870 35.988 339 178 5 22 325 65 399 7.54e-71 226
MS.gene52672.t1 AT1G34510 39.117 317 175 7 13 327 9 309 2.09e-70 221
MS.gene52672.t1 AT4G37530 45.594 261 138 3 18 275 20 279 1.11e-69 219
MS.gene52672.t1 AT4G26010 40.000 320 168 9 13 327 9 309 1.80e-69 219
MS.gene52672.t1 AT4G26010 40.000 320 168 9 13 327 37 337 3.02e-69 219
MS.gene52672.t1 AT4G17690 38.487 304 179 3 25 327 26 322 1.01e-67 215
MS.gene52672.t1 AT5G22410 40.909 308 167 10 22 324 25 322 1.90e-67 214
MS.gene52672.t1 AT4G31760 39.198 324 185 6 8 327 11 326 1.65e-66 212
MS.gene52672.t1 AT1G30870 38.562 306 174 8 25 327 51 345 2.45e-66 212
MS.gene52672.t1 AT5G47000 35.577 312 194 3 17 327 25 330 2.21e-65 209
MS.gene52672.t1 AT2G24800 38.835 309 177 5 23 327 29 329 8.76e-65 207
MS.gene52672.t1 AT1G24110 35.294 323 200 6 10 327 4 322 3.51e-62 201
MS.gene52672.t1 AT3G28200 33.871 310 192 4 21 327 17 316 8.99e-61 197
MS.gene52672.t1 AT4G21960 36.304 303 179 6 25 323 31 323 9.99e-60 195
MS.gene52672.t1 AT5G40150 35.390 308 191 3 21 327 28 328 4.63e-59 193
MS.gene52672.t1 AT2G37130 33.442 308 192 5 24 327 29 327 4.44e-54 180
MS.gene52672.t1 AT2G37130 33.663 303 188 5 29 327 3 296 8.69e-54 178
MS.gene52672.t1 AT3G17070 33.856 319 178 8 25 327 38 339 8.18e-49 167
MS.gene52672.t1 AT4G25980 46.448 183 93 3 13 195 59 236 1.55e-47 162
MS.gene52672.t1 AT5G39580 48.705 193 91 6 12 202 10 196 3.32e-46 157
MS.gene52672.t1 AT2G24800 40.462 173 98 1 23 195 29 196 4.23e-35 128
MS.gene52672.t1 AT3G17070 30.796 289 170 8 53 327 4 276 4.00e-34 126
MS.gene52672.t1 AT3G42570 34.513 113 72 2 82 193 38 149 6.62e-14 68.6
MS.gene52672.t1 AT1G77490 26.515 264 151 11 59 309 106 339 1.29e-13 71.6
MS.gene52672.t1 AT1G77490 26.515 264 151 11 59 309 106 339 1.72e-13 71.2
MS.gene52672.t1 AT4G35970 29.798 198 91 7 82 275 55 208 1.66e-12 66.2

Find 60 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCTTGACTTCCCATTAA+TGG 0.180025 7.2:+16018114 None:intergenic
GGGTAATATCAGTCCATTAA+TGG 0.236886 7.2:-16018127 MS.gene52672:CDS
TGCTGAAGCTTCTGTATCTT+TGG 0.257038 7.2:-16019145 MS.gene52672:intron
TAAGCCAACAGCAGAAAATT+TGG 0.257204 7.2:+16018864 None:intergenic
TCCAATTGTAGGAAAGTTAA+TGG 0.269235 7.2:-16018084 MS.gene52672:CDS
TCCATTAACTTTCCTACAAT+TGG 0.278391 7.2:+16018083 None:intergenic
GAATATTAGCACTGTGAAAA+TGG 0.281508 7.2:+16019588 None:intergenic
TGTGTCTTGTGCTGATATTT+TGG 0.282472 7.2:-16019175 MS.gene52672:CDS
GAATTAGGTGCACATACTTT+TGG 0.305338 7.2:-16018480 MS.gene52672:intron
CAACAAAATTGTCCACAAAA+TGG 0.305817 7.2:-16018360 MS.gene52672:CDS
CATTAGTGGAAAACAATTCT+TGG 0.347221 7.2:+16018235 None:intergenic
CTGAACAACATTTCTCACTA+TGG 0.348902 7.2:+16019495 None:intergenic
CCACGAGCTGAATTATTGTT+AGG 0.354824 7.2:+16019252 None:intergenic
AGTGATCTAGTTGCATTATC+TGG 0.368131 7.2:-16018835 MS.gene52672:intron
TGCAGTCAGGAGGTCCTTCA+TGG 0.392241 7.2:-16018984 MS.gene52672:intron
CACTGAAGTTGAATAGTCTT+TGG 0.398801 7.2:+16018433 None:intergenic
TCGAAATTGTTTGGTGATGA+AGG 0.418026 7.2:+16018309 None:intergenic
GGTAATATCAGTCCATTAAT+GGG 0.424844 7.2:-16018126 MS.gene52672:CDS
CTCACTATGGAAGAAACATT+GGG 0.436946 7.2:+16019508 None:intergenic
GTTGAATTCAGTGTTGGATC+AGG 0.449005 7.2:+16018399 None:intergenic
AGAAAATTTGGCAGTGACAT+TGG 0.460032 7.2:+16018876 None:intergenic
GATTGTAGCAGCACCATTAG+TGG 0.460308 7.2:+16018221 None:intergenic
GAGAAATTAGATCCAATTGT+AGG 0.464574 7.2:-16018095 MS.gene52672:CDS
GATATTACCCATGTTAATCA+TGG 0.480311 7.2:+16018140 None:intergenic
GCTTTCAGTTGGAGCAGGAA+TGG 0.491093 7.2:+16018903 None:intergenic
GCTAAGCTTTCAGTTGGAGC+AGG 0.495793 7.2:+16018898 None:intergenic
TAGTTGTTGTCGAAATTGTT+TGG 0.499968 7.2:+16018300 None:intergenic
ACATTGGCTAAGCTTTCAGT+TGG 0.500974 7.2:+16018892 None:intergenic
TCTCACTATGGAAGAAACAT+TGG 0.503003 7.2:+16019507 None:intergenic
AAATCAAGGTCTTCTTCAAA+CGG 0.509165 7.2:-16018259 MS.gene52672:CDS
CCTTCATGGAATGTACTACT+TGG 0.512650 7.2:-16018970 MS.gene52672:CDS
CTATTCAACTTCAGTGGCAC+AGG 0.520255 7.2:-16018426 MS.gene52672:CDS
GAGCATGTGATGGATTAAGA+AGG 0.529837 7.2:+16019563 None:intergenic
GGTCTGTTTGCAAACCAATC+TGG 0.532827 7.2:-16018937 MS.gene52672:CDS
TGTTCAGTCCATGATTAACA+TGG 0.539490 7.2:-16018148 MS.gene52672:CDS
CATGAAACTGAAGACGGGTT+AGG 0.549547 7.2:+16019437 None:intergenic
GTACTACTTGGCAGAAGGGA+TGG 0.553719 7.2:-16018958 MS.gene52672:CDS
CGAAATTGTTTGGTGATGAA+GGG 0.556805 7.2:+16018310 None:intergenic
AATTGTCCACAAAATGGAAG+TGG 0.563268 7.2:-16018354 MS.gene52672:CDS
GAATGTACTACTTGGCAGAA+GGG 0.569042 7.2:-16018962 MS.gene52672:CDS
CATGTGATGGATTAAGAAGG+AGG 0.571412 7.2:+16019566 None:intergenic
GAGGTTAGTTGAGCATGTGA+TGG 0.579020 7.2:+16019553 None:intergenic
AGATATGTTGAATTCAGTGT+TGG 0.579335 7.2:+16018393 None:intergenic
GGAATGTACTACTTGGCAGA+AGG 0.583445 7.2:-16018963 MS.gene52672:CDS
GTTCAGTCCATGATTAACAT+GGG 0.587414 7.2:-16018147 MS.gene52672:CDS
GCTTGCAAAGTTGTTAACAA+TGG 0.593422 7.2:+16018197 None:intergenic
GCAATCATGAAACTGAAGAC+GGG 0.594589 7.2:+16019432 None:intergenic
AGTCCATTAATGGGAAGTCA+AGG 0.598007 7.2:-16018117 MS.gene52672:CDS
AGCAATCATGAAACTGAAGA+CGG 0.599227 7.2:+16019431 None:intergenic
TGGATGTGTTGGCACCAGAT+TGG 0.602779 7.2:+16018923 None:intergenic
CCAAGTAGTACATTCCATGA+AGG 0.604615 7.2:+16018970 None:intergenic
GTTAATCATGGACTGAACAA+AGG 0.607469 7.2:+16018152 None:intergenic
CAAAGACTATTCAACTTCAG+TGG 0.618577 7.2:-16018432 MS.gene52672:CDS
CTGAAGACGGGTTAGGCTCG+CGG 0.619803 7.2:+16019444 None:intergenic
CCTAACAATAATTCAGCTCG+TGG 0.620664 7.2:-16019252 MS.gene52672:CDS
TGGAGCAGGAATGGATGTGT+TGG 0.622693 7.2:+16018912 None:intergenic
TCAGCACAAGACACAACAGC+AGG 0.630251 7.2:+16019183 None:intergenic
GATGTATATTTGCAGTCAGG+AGG 0.632669 7.2:-16018994 MS.gene52672:intron
GTTAGGCTCGCGGTAATACG+AGG 0.667312 7.2:+16019454 None:intergenic
TCACTATGGAAGAAACATTG+GGG 0.713143 7.2:+16019509 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAACTAAATATCAATT+AGG + chr7.2:16018570-16018589 None:intergenic 10.0%
!!! CATTTTTTTTTTTTAACTAT+TGG - chr7.2:16019163-16019182 MS.gene52672:CDS 10.0%
!! ATTTCAACAATTATATCTAA+TGG - chr7.2:16019042-16019061 MS.gene52672:intron 15.0%
!!! TTATTAATTTGTGTATTTCA+GGG - chr7.2:16018348-16018367 MS.gene52672:CDS 15.0%
!! AGACTTTAATTAGAATATGT+TGG - chr7.2:16018899-16018918 MS.gene52672:CDS 20.0%
!! TAATTAGAATATGTTGGATT+AGG - chr7.2:16018905-16018924 MS.gene52672:CDS 20.0%
!! TAGCAAACTAATATTTATCA+TGG - chr7.2:16018621-16018640 MS.gene52672:intron 20.0%
!! TATATCTAATGGTTGAAATT+TGG - chr7.2:16019053-16019072 MS.gene52672:intron 20.0%
!!! GTTATTAATTTGTGTATTTC+AGG - chr7.2:16018347-16018366 MS.gene52672:CDS 20.0%
! AAGAATCTTCTCAAAAATCA+AGG - chr7.2:16019414-16019433 MS.gene52672:intron 25.0%
! GTGAAAATGGAATAAAAAGT+AGG + chr7.2:16018089-16018108 None:intergenic 25.0%
!! AAGTTTTCATGAGTTAAACT+AGG - chr7.2:16018992-16019011 MS.gene52672:intron 25.0%
AAATCAAGGTCTTCTTCAAA+CGG - chr7.2:16019428-16019447 MS.gene52672:CDS 30.0%
AGATATGTTGAATTCAGTGT+TGG + chr7.2:16019297-16019316 None:intergenic 30.0%
CAAATGGATCAACTTGAATT+AGG - chr7.2:16019192-16019211 MS.gene52672:CDS 30.0%
CAACAAAATTGTCCACAAAA+TGG - chr7.2:16019327-16019346 MS.gene52672:intron 30.0%
CATTAGTGGAAAACAATTCT+TGG + chr7.2:16019455-16019474 None:intergenic 30.0%
GAATATTAGCACTGTGAAAA+TGG + chr7.2:16018102-16018121 None:intergenic 30.0%
GAGAAATTAGATCCAATTGT+AGG - chr7.2:16019592-16019611 MS.gene52672:CDS 30.0%
GATATTACCCATGTTAATCA+TGG + chr7.2:16019550-16019569 None:intergenic 30.0%
GGTAATATCAGTCCATTAAT+GGG - chr7.2:16019561-16019580 MS.gene52672:CDS 30.0%
TAGTTGTTGTCGAAATTGTT+TGG + chr7.2:16019390-16019409 None:intergenic 30.0%
TCCAATTGTAGGAAAGTTAA+TGG - chr7.2:16019603-16019622 MS.gene52672:CDS 30.0%
TCCATTAACTTTCCTACAAT+TGG + chr7.2:16019607-16019626 None:intergenic 30.0%
TGATTAATGAGCTAGAGTTT+AGG - chr7.2:16018305-16018324 MS.gene52672:CDS 30.0%
! CAAGAATTGTTTTCCACTAA+TGG - chr7.2:16019453-16019472 MS.gene52672:CDS 30.0%
! GCATCTCTTTTATTAGATCA+AGG - chr7.2:16018378-16018397 MS.gene52672:CDS 30.0%
! TAACTATTGGTTGACACAAA+TGG - chr7.2:16019176-16019195 MS.gene52672:CDS 30.0%
! TCTCTTTTATTAGATCAAGG+TGG - chr7.2:16018381-16018400 MS.gene52672:CDS 30.0%
AATTGTCCACAAAATGGAAG+TGG - chr7.2:16019333-16019352 MS.gene52672:intron 35.0%
AGAAAATTTGGCAGTGACAT+TGG + chr7.2:16018814-16018833 None:intergenic 35.0%
AGCAATCATGAAACTGAAGA+CGG + chr7.2:16018259-16018278 None:intergenic 35.0%
AGGCTTCAAAAAAAGCTGTT+TGG + chr7.2:16019518-16019537 None:intergenic 35.0%
AGTGATCTAGTTGCATTATC+TGG - chr7.2:16018852-16018871 MS.gene52672:CDS 35.0%
CAAAGACTATTCAACTTCAG+TGG - chr7.2:16019255-16019274 MS.gene52672:CDS 35.0%
CACTGAAGTTGAATAGTCTT+TGG + chr7.2:16019257-16019276 None:intergenic 35.0%
CTCACTATGGAAGAAACATT+GGG + chr7.2:16018182-16018201 None:intergenic 35.0%
CTGAACAACATTTCTCACTA+TGG + chr7.2:16018195-16018214 None:intergenic 35.0%
GATGATGTATATTTGCAGTC+AGG - chr7.2:16018690-16018709 MS.gene52672:intron 35.0%
GCTTGCAAAGTTGTTAACAA+TGG + chr7.2:16019493-16019512 None:intergenic 35.0%
GGGTAATATCAGTCCATTAA+TGG - chr7.2:16019560-16019579 MS.gene52672:CDS 35.0%
GTTCAGTCCATGATTAACAT+GGG - chr7.2:16019540-16019559 MS.gene52672:CDS 35.0%
TAAGCCAACAGCAGAAAATT+TGG + chr7.2:16018826-16018845 None:intergenic 35.0%
TCACTATGGAAGAAACATTG+GGG + chr7.2:16018181-16018200 None:intergenic 35.0%
TCTCACTATGGAAGAAACAT+TGG + chr7.2:16018183-16018202 None:intergenic 35.0%
TGTTCAGTCCATGATTAACA+TGG - chr7.2:16019539-16019558 MS.gene52672:CDS 35.0%
! AGGACATGAATTTTCAACAG+AGG + chr7.2:16018487-16018506 None:intergenic 35.0%
! GAATTAGGTGCACATACTTT+TGG - chr7.2:16019207-16019226 MS.gene52672:CDS 35.0%
! GTTAATCATGGACTGAACAA+AGG + chr7.2:16019538-16019557 None:intergenic 35.0%
!! CGAAATTGTTTGGTGATGAA+GGG + chr7.2:16019380-16019399 None:intergenic 35.0%
!! TCGAAATTGTTTGGTGATGA+AGG + chr7.2:16019381-16019400 None:intergenic 35.0%
!! TGTGTCTTGTGCTGATATTT+TGG - chr7.2:16018512-16018531 MS.gene52672:intron 35.0%
!!! TGTTTTCGAGTAGAATGTTG+AGG + chr7.2:16018156-16018175 None:intergenic 35.0%
AGTCCATTAATGGGAAGTCA+AGG - chr7.2:16019570-16019589 MS.gene52672:CDS 40.0%
CCAAGTAGTACATTCCATGA+AGG + chr7.2:16018720-16018739 None:intergenic 40.0%
CCACGAGCTGAATTATTGTT+AGG + chr7.2:16018438-16018457 None:intergenic 40.0%
CCTAACAATAATTCAGCTCG+TGG - chr7.2:16018435-16018454 MS.gene52672:CDS 40.0%
CCTTCATGGAATGTACTACT+TGG - chr7.2:16018717-16018736 MS.gene52672:intron 40.0%
GAATGTACTACTTGGCAGAA+GGG - chr7.2:16018725-16018744 MS.gene52672:intron 40.0%
GATGTATATTTGCAGTCAGG+AGG - chr7.2:16018693-16018712 MS.gene52672:intron 40.0%
GCAATCATGAAACTGAAGAC+GGG + chr7.2:16018258-16018277 None:intergenic 40.0%
TCTCCTTGACTTCCCATTAA+TGG + chr7.2:16019576-16019595 None:intergenic 40.0%
TGCTGAAGCTTCTGTATCTT+TGG - chr7.2:16018542-16018561 MS.gene52672:intron 40.0%
! ACATTGGCTAAGCTTTCAGT+TGG + chr7.2:16018798-16018817 None:intergenic 40.0%
! ACTGCCAAATTTTCTGCTGT+TGG - chr7.2:16018819-16018838 MS.gene52672:intron 40.0%
! GTGTTACCACTTCCATTTTG+TGG + chr7.2:16019342-16019361 None:intergenic 40.0%
! GTTGAATTCAGTGTTGGATC+AGG + chr7.2:16019291-16019310 None:intergenic 40.0%
!! CATGTGATGGATTAAGAAGG+AGG + chr7.2:16018124-16018143 None:intergenic 40.0%
!! GAGCATGTGATGGATTAAGA+AGG + chr7.2:16018127-16018146 None:intergenic 40.0%
CTATTCAACTTCAGTGGCAC+AGG - chr7.2:16019261-16019280 MS.gene52672:CDS 45.0%
CTGCACTAACTGAACGACTA+AGG + chr7.2:16019018-16019037 None:intergenic 45.0%
GATTGTAGCAGCACCATTAG+TGG + chr7.2:16019469-16019488 None:intergenic 45.0%
GGAATGTACTACTTGGCAGA+AGG - chr7.2:16018724-16018743 MS.gene52672:intron 45.0%
GGTCTGTTTGCAAACCAATC+TGG - chr7.2:16018750-16018769 MS.gene52672:intron 45.0%
GTTGAAATTTGGACGCACGA+CGG - chr7.2:16019064-16019083 MS.gene52672:intron 45.0%
! CATGAAACTGAAGACGGGTT+AGG + chr7.2:16018253-16018272 None:intergenic 45.0%
! GAGGTTAGTTGAGCATGTGA+TGG + chr7.2:16018137-16018156 None:intergenic 45.0%
GCTAAGCTTTCAGTTGGAGC+AGG + chr7.2:16018792-16018811 None:intergenic 50.0%
GCTTTCAGTTGGAGCAGGAA+TGG + chr7.2:16018787-16018806 None:intergenic 50.0%
GTACTACTTGGCAGAAGGGA+TGG - chr7.2:16018729-16018748 MS.gene52672:intron 50.0%
TCAGCACAAGACACAACAGC+AGG + chr7.2:16018507-16018526 None:intergenic 50.0%
TGGAGCAGGAATGGATGTGT+TGG + chr7.2:16018778-16018797 None:intergenic 50.0%
! TGGATGTGTTGGCACCAGAT+TGG + chr7.2:16018767-16018786 None:intergenic 50.0%
GTTAGGCTCGCGGTAATACG+AGG + chr7.2:16018236-16018255 None:intergenic 55.0%
TGCAGTCAGGAGGTCCTTCA+TGG - chr7.2:16018703-16018722 MS.gene52672:intron 55.0%
!! CTGAAGACGGGTTAGGCTCG+CGG + chr7.2:16018246-16018265 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 16018077 16019632 16018077 ID=MS.gene52672
chr7.2 mRNA 16018077 16019632 16018077 ID=MS.gene52672.t1;Parent=MS.gene52672
chr7.2 exon 16019423 16019632 16019423 ID=MS.gene52672.t1.exon1;Parent=MS.gene52672.t1
chr7.2 CDS 16019423 16019632 16019423 ID=cds.MS.gene52672.t1;Parent=MS.gene52672.t1
chr7.2 exon 16019146 16019340 16019146 ID=MS.gene52672.t1.exon2;Parent=MS.gene52672.t1
chr7.2 CDS 16019146 16019340 16019146 ID=cds.MS.gene52672.t1;Parent=MS.gene52672.t1
chr7.2 exon 16018836 16019001 16018836 ID=MS.gene52672.t1.exon3;Parent=MS.gene52672.t1
chr7.2 CDS 16018836 16019001 16018836 ID=cds.MS.gene52672.t1;Parent=MS.gene52672.t1
chr7.2 exon 16018077 16018495 16018077 ID=MS.gene52672.t1.exon4;Parent=MS.gene52672.t1
chr7.2 CDS 16018077 16018495 16018077 ID=cds.MS.gene52672.t1;Parent=MS.gene52672.t1
Gene Sequence

>MS.gene52672

ATGTTTTCTCCTACTTTTTATTCCATTTTCACAGTGCTAATATTCCTCCTTCTTAATCCATCACATGCTCAACTAACCTCAACATTCTACTCGAAAACATGCCCCAATGTTTCTTCCATAGTGAGAAATGTTGTTCAGCAAGCTCTGCAAAATGATCCTCGTATTACCGCGAGCCTAACCCGTCTTCAGTTTCATGATTGCTTTGTTAATGTAATTTCTAATACTTCTTGATTAATGAGCTAGAGTTTAGGTGATTAATTAATAACTAATGTTATTAATTTGTGTATTTCAGGGATGTGATGCATCTCTTTTATTAGATCAAGGTGGAAACATAACACTAAGTGAGAAAAATGCTGTTCCTAACAATAATTCAGCTCGTGGCTTTGATGTAGTTGACAAAATCAAAACCTCTGTTGAAAATTCATGTCCTGCTGTTGTGTCTTGTGCTGATATTTTGGCTCTTGCTGCTGAAGCTTCTGTATCTTTGGTACCTAATTGATATTTAGTTAATTATTTATCATTACAATTTTACTCTCAAATTTCTTAGCAAACTAATATTTATCATGGTTTGATACATTTAGCTAAAAAGATGCATAAATATAGTGATGTTTATGATGATGTATATTTGCAGTCAGGAGGTCCTTCATGGAATGTACTACTTGGCAGAAGGGATGGTCTGTTTGCAAACCAATCTGGTGCCAACACATCCATTCCTGCTCCAACTGAAAGCTTAGCCAATGTCACTGCCAAATTTTCTGCTGTTGGCTTAAACACAAGTGATCTAGTTGCATTATCTGGTAATCACACTTACTTCTCTAATTTAGACTTTAATTAGAATATGTTGGATTAGGATATATAAATATCTTGAATAAAACTTAAAAAAATCTTACATGAACTATGAGTTTATTAAATAGCAAGTTTTCATGAGTTAAACTAGGCCTTAGTCGTTCAGTTAGTGCAGTCAAATTTCAACAATTATATCTAATGGTTGAAATTTGGACGCACGACGGAATGATTGAAGAGATTCATAGCAAATAAGTTTTGTAAAAAATTATTGATTTCATTATGTGTCAGTATGATACTAAGCATTTTTTTTTTTTAACTATTGGTTGACACAAATGGATCAACTTGAATTAGGTGCACATACTTTTGGTCGTGCACAATGTAGATTTTTCAACCAAAGACTATTCAACTTCAGTGGCACAGGTAAGCCTGATCCAACACTGAATTCAACATATCTAGCAACTCTACAACAAAATTGTCCACAAAATGGAAGTGGTAACACACTAAACAATCTTGACCCTTCATCACCAAACAATTTCGACAACAACTACTTCAAGAATCTTCTCAAAAATCAAGGTCTTCTTCAAACGGACCAAGAATTGTTTTCCACTAATGGTGCTGCTACAATCTCCATTGTTAACAACTTTGCAAGCAACCAAACAGCTTTTTTTGAAGCCTTTGTTCAGTCCATGATTAACATGGGTAATATCAGTCCATTAATGGGAAGTCAAGGAGAAATTAGATCCAATTGTAGGAAAGTTAATGGAAGTTGA
Protein sequence

>MS.gene52672.t1

MFSPTFYSIFTVLIFLLLNPSHAQLTSTFYSKTCPNVSSIVRNVVQQALQNDPRITASLTRLQFHDCFVNGCDASLLLDQGGNITLSEKNAVPNNNSARGFDVVDKIKTSVENSCPAVVSCADILALAAEASVSLSGGPSWNVLLGRRDGLFANQSGANTSIPAPTESLANVTAKFSAVGLNTSDLVALSGAHTFGRAQCRFFNQRLFNFSGTGKPDPTLNSTYLATLQQNCPQNGSGNTLNNLDPSSPNNFDNNYFKNLLKNQGLLQTDQELFSTNGAATISIVNNFASNQTAFFEAFVQSMINMGNISPLMGSQGEIRSNCRKVNGS