Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001465.t1 | CAB77055.1 | 83 | 235 | 21 | 1 | 1 | 216 | 1 | 235 | 5.90E-79 | 303.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001465.t1 | Q96289 | 37.4 | 227 | 110 | 7 | 1 | 205 | 1 | 217 | 2.4e-20 | 100.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001465.t1 | Q9LWA5 | 83.0 | 235 | 21 | 1 | 1 | 216 | 1 | 235 | 4.3e-79 | 303.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene001465 | MS.gene24464 | PPI |
MS.gene001465 | MS.gene32887 | PPI |
MS.gene001465 | MS.gene001466 | PPI |
MS.gene001465 | MS.gene044101 | PPI |
MS.gene001465 | MS.gene38597 | PPI |
MS.gene001465 | MS.gene66447 | PPI |
MS.gene015091 | MS.gene001465 | PPI |
MS.gene001465 | MS.gene00489 | PPI |
MS.gene001465 | MS.gene38598 | PPI |
MS.gene001465 | MS.gene012885 | PPI |
MS.gene38597 | MS.gene001465 | PPI |
MS.gene001465 | MS.gene015091 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001465.t1 | MTR_3g102980 | 86.975 | 238 | 7 | 4 | 1 | 216 | 1 | 236 | 3.18e-130 | 366 |
MS.gene001465.t1 | MTR_1g018420 | 50.204 | 245 | 76 | 10 | 1 | 214 | 1 | 230 | 5.44e-62 | 193 |
MS.gene001465.t1 | MTR_1g106730 | 43.580 | 257 | 85 | 14 | 1 | 211 | 3 | 245 | 2.29e-41 | 141 |
MS.gene001465.t1 | MTR_0160s0030 | 36.885 | 122 | 52 | 4 | 84 | 196 | 240 | 345 | 4.36e-12 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene001465.t1 | AT1G27730 | 45.992 | 237 | 91 | 10 | 1 | 212 | 1 | 225 | 3.60e-49 | 160 |
MS.gene001465.t1 | AT5G04340 | 43.644 | 236 | 93 | 10 | 1 | 203 | 1 | 229 | 6.36e-43 | 144 |
MS.gene001465.t1 | AT5G43170 | 46.429 | 224 | 71 | 11 | 1 | 207 | 1 | 192 | 4.00e-37 | 128 |
MS.gene001465.t1 | AT3G19580 | 40.000 | 260 | 101 | 9 | 1 | 208 | 1 | 257 | 2.23e-35 | 126 |
MS.gene001465.t1 | AT3G19580 | 40.000 | 260 | 101 | 9 | 1 | 208 | 1 | 257 | 2.23e-35 | 126 |
MS.gene001465.t1 | AT5G67450 | 37.295 | 244 | 83 | 10 | 1 | 181 | 1 | 237 | 2.82e-28 | 107 |
MS.gene001465.t1 | AT3G49930 | 40.805 | 174 | 65 | 5 | 30 | 181 | 36 | 193 | 1.22e-26 | 102 |
MS.gene001465.t1 | AT2G45120 | 36.420 | 162 | 75 | 6 | 44 | 181 | 143 | 300 | 3.04e-16 | 76.3 |
MS.gene001465.t1 | AT3G60580 | 33.533 | 167 | 73 | 4 | 44 | 181 | 119 | 276 | 2.15e-15 | 73.6 |
MS.gene001465.t1 | AT1G49900 | 42.222 | 90 | 37 | 2 | 85 | 159 | 194 | 283 | 8.19e-12 | 64.3 |
MS.gene001465.t1 | AT2G28200 | 29.744 | 195 | 80 | 8 | 46 | 184 | 70 | 263 | 5.41e-11 | 61.2 |
Find 54 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGCGGACATAACAGCTTTC+CGG | 0.302034 | 3.2:+24588325 | None:intergenic |
GTTTCAAGATAACTCAGATT+TGG | 0.369889 | 3.2:+24588582 | None:intergenic |
CCTTCCTACTGACAGGCTTT+GGG | 0.379008 | 3.2:-24588201 | MS.gene001465:intron |
TACTCCTTTCACACCCTTTG+AGG | 0.385893 | 3.2:-24588607 | MS.gene001465:CDS |
GGCAGCGTTGGTGCCGGTGC+CGG | 0.399502 | 3.2:-24588153 | MS.gene001465:CDS |
CTCAGATTTGGTTCCTCAAA+GGG | 0.424837 | 3.2:+24588594 | None:intergenic |
GTTGGTGCCGGTGCCGGTGC+TGG | 0.425482 | 3.2:-24588147 | MS.gene001465:CDS |
CATAACAGCTTTCCGGTGAC+TGG | 0.439265 | 3.2:+24588332 | None:intergenic |
GGCTTCTTTGCAGCAGGTAA+AGG | 0.446061 | 3.2:+24587997 | None:intergenic |
AATTTCCAGCTTGAAAAGAC+AGG | 0.452679 | 3.2:+24587975 | None:intergenic |
CTGATCTTCAGCGGTGGTTG+CGG | 0.460016 | 3.2:+24588308 | None:intergenic |
TTTGAAAAGTCCGGAAAAGC+CGG | 0.466243 | 3.2:+24588051 | None:intergenic |
ACTGGCTTTGTGTCCACCTA+GGG | 0.475209 | 3.2:+24588350 | None:intergenic |
GATCGTTTACCTTTCGTCCA+CGG | 0.485045 | 3.2:+24588558 | None:intergenic |
GCATTTGTGACTGAGTTTAA+CGG | 0.491121 | 3.2:+24588407 | None:intergenic |
AGACAGGGCTTCTTTGCAGC+AGG | 0.516606 | 3.2:+24587991 | None:intergenic |
GGTTCCTCAAAGGGTGTGAA+AGG | 0.517530 | 3.2:+24588603 | None:intergenic |
ACGATCAAAGCGTTCTCGCA+TGG | 0.518878 | 3.2:-24588541 | MS.gene001465:CDS |
TACGAAGGCAGCGTTGGTGC+CGG | 0.519961 | 3.2:-24588159 | MS.gene001465:CDS |
TTGAAAAGTCCGGAAAAGCC+GGG | 0.523321 | 3.2:+24588052 | None:intergenic |
GACTGGCTTTGTGTCCACCT+AGG | 0.526559 | 3.2:+24588349 | None:intergenic |
TCTTACGTTGGAAGCAGAGC+TGG | 0.528912 | 3.2:+24588257 | None:intergenic |
CTGAGTTTAACGGTGGTTAG+CGG | 0.533899 | 3.2:+24588417 | None:intergenic |
ACTCAGATTTGGTTCCTCAA+AGG | 0.539745 | 3.2:+24588593 | None:intergenic |
TTCTCATCTTATCAAGCCCT+AGG | 0.550654 | 3.2:-24588366 | MS.gene001465:CDS |
GTAACTGCCTCTGAAGGAGT+TGG | 0.551176 | 3.2:-24588114 | MS.gene001465:CDS |
CTTGAAACACCGTGGACGAA+AGG | 0.563216 | 3.2:-24588567 | MS.gene001465:CDS |
TGTGAAAGGAGTAGCAGTGG+TGG | 0.569120 | 3.2:+24588617 | None:intergenic |
TGTCACTACGAAGGCAGCGT+TGG | 0.571767 | 3.2:-24588165 | MS.gene001465:CDS |
TCCTACTGACAGGCTTTGGG+AGG | 0.574945 | 3.2:-24588198 | MS.gene001465:intron |
GGTAGTCACGGCGGATGAAG+TGG | 0.575582 | 3.2:+24588278 | None:intergenic |
GCTACTTCCAGCACCGGCAC+CGG | 0.578492 | 3.2:+24588140 | None:intergenic |
TAAGATCAAAATCACGGTGG+TGG | 0.583762 | 3.2:+24588079 | None:intergenic |
GGAAGCAGAGCTGGTAGTCA+CGG | 0.585255 | 3.2:+24588266 | None:intergenic |
CTCATCATGCTTGCTCGCAG+CGG | 0.585296 | 3.2:-24588477 | MS.gene001465:CDS |
GTGGACACAAAGCCAGTCAC+CGG | 0.585980 | 3.2:-24588344 | MS.gene001465:CDS |
ATTTCCAGCTTGAAAAGACA+GGG | 0.591447 | 3.2:+24587976 | None:intergenic |
TACAGCGCTACTTCCAGCAC+CGG | 0.591699 | 3.2:+24588134 | None:intergenic |
ATTATTGATCAGTAATGAGA+AGG | 0.592327 | 3.2:+24587952 | None:intergenic |
GTGAAAGGAGTAGCAGTGGT+GGG | 0.592634 | 3.2:+24588618 | None:intergenic |
AGCGCTGTAACTGCCTCTGA+AGG | 0.607763 | 3.2:-24588120 | MS.gene001465:CDS |
TCATCTTATCAAGCCCTAGG+TGG | 0.625860 | 3.2:-24588363 | MS.gene001465:CDS |
TGACGATCCAACTCCTTCAG+AGG | 0.633382 | 3.2:+24588107 | None:intergenic |
GGGTGTGAAAGGAGTAGCAG+TGG | 0.640901 | 3.2:+24588614 | None:intergenic |
GGAGGTTAAGATCAAAATCA+CGG | 0.658091 | 3.2:+24588073 | None:intergenic |
AGTCACGGCGGATGAAGTGG+TGG | 0.674100 | 3.2:+24588281 | None:intergenic |
CACAAGCGTTGTCACTACGA+AGG | 0.677003 | 3.2:-24588174 | MS.gene001465:CDS |
TTTGTGACTGAGTTTAACGG+TGG | 0.692042 | 3.2:+24588410 | None:intergenic |
AGCAGAGCTGGTAGTCACGG+CGG | 0.700777 | 3.2:+24588269 | None:intergenic |
GGTGATCTGATCTTCAGCGG+TGG | 0.700953 | 3.2:+24588302 | None:intergenic |
GGTGGTGATCTGATCTTCAG+CGG | 0.704088 | 3.2:+24588299 | None:intergenic |
AAAAGTCCGGAAAAGCCGGG+AGG | 0.720865 | 3.2:+24588055 | None:intergenic |
TGAGTTATCTTGAAACACCG+TGG | 0.739154 | 3.2:-24588575 | MS.gene001465:CDS |
GGTTAAGATCAAAATCACGG+TGG | 0.807668 | 3.2:+24588076 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAACTTCTTTGAAAAGTC+CGG | + | chr3.2:24588563-24588582 | None:intergenic | 25.0% |
GTTTCAAGATAACTCAGATT+TGG | + | chr3.2:24588023-24588042 | None:intergenic | 30.0% | |
! | CTTTTCAAAGAAGTTTTTCG+TGG | - | chr3.2:24588565-24588584 | MS.gene001465:CDS | 30.0% |
AATTTCCAGCTTGAAAAGAC+AGG | + | chr3.2:24588630-24588649 | None:intergenic | 35.0% | |
ATTTCCAGCTTGAAAAGACA+GGG | + | chr3.2:24588629-24588648 | None:intergenic | 35.0% | |
CAACGACAAAAAGTCTGATT+CGG | - | chr3.2:24588154-24588173 | MS.gene001465:CDS | 35.0% | |
GCATTTGTGACTGAGTTTAA+CGG | + | chr3.2:24588198-24588217 | None:intergenic | 35.0% | |
GGAGGTTAAGATCAAAATCA+CGG | + | chr3.2:24588532-24588551 | None:intergenic | 35.0% | |
!! | TGATTTTGATCTTAACCTCC+CGG | - | chr3.2:24588532-24588551 | MS.gene001465:CDS | 35.0% |
GGTTAAGATCAAAATCACGG+TGG | + | chr3.2:24588529-24588548 | None:intergenic | 40.0% | |
TAAGATCAAAATCACGGTGG+TGG | + | chr3.2:24588526-24588545 | None:intergenic | 40.0% | |
TAGGAAGGATTTGTGACAGA+TGG | + | chr3.2:24588389-24588408 | None:intergenic | 40.0% | |
TGAGTTATCTTGAAACACCG+TGG | - | chr3.2:24588027-24588046 | MS.gene001465:CDS | 40.0% | |
TTCTCATCTTATCAAGCCCT+AGG | - | chr3.2:24588236-24588255 | MS.gene001465:intron | 40.0% | |
TTTGAAAAGTCCGGAAAAGC+CGG | + | chr3.2:24588554-24588573 | None:intergenic | 40.0% | |
TTTGTGACTGAGTTTAACGG+TGG | + | chr3.2:24588195-24588214 | None:intergenic | 40.0% | |
! | ACTCAGATTTGGTTCCTCAA+AGG | + | chr3.2:24588012-24588031 | None:intergenic | 40.0% |
! | CTCAGATTTGGTTCCTCAAA+GGG | + | chr3.2:24588011-24588030 | None:intergenic | 40.0% |
!! | CATGAGTCTTGTTCTTACGT+TGG | + | chr3.2:24588360-24588379 | None:intergenic | 40.0% |
CACAAATCCTTCCTACTGAC+AGG | - | chr3.2:24588394-24588413 | MS.gene001465:CDS | 45.0% | |
CTGAGTTTAACGGTGGTTAG+CGG | + | chr3.2:24588188-24588207 | None:intergenic | 45.0% | |
GATCGTTTACCTTTCGTCCA+CGG | + | chr3.2:24588047-24588066 | None:intergenic | 45.0% | |
TACTCCTTTCACACCCTTTG+AGG | - | chr3.2:24587995-24588014 | MS.gene001465:CDS | 45.0% | |
TCATCTTATCAAGCCCTAGG+TGG | - | chr3.2:24588239-24588258 | MS.gene001465:intron | 45.0% | |
TTGAAAAGTCCGGAAAAGCC+GGG | + | chr3.2:24588553-24588572 | None:intergenic | 45.0% | |
TTGCGGACATAACAGCTTTC+CGG | + | chr3.2:24588280-24588299 | None:intergenic | 45.0% | |
! | GAAGTTTTTCGTGGATGACG+AGG | - | chr3.2:24588574-24588593 | MS.gene001465:CDS | 45.0% |
!! | CGACAAAAAGTCTGATTCGG+TGG | - | chr3.2:24588157-24588176 | MS.gene001465:CDS | 45.0% |
CATAACAGCTTTCCGGTGAC+TGG | + | chr3.2:24588273-24588292 | None:intergenic | 50.0% | |
CCTTCCTACTGACAGGCTTT+GGG | - | chr3.2:24588401-24588420 | MS.gene001465:CDS | 50.0% | |
CTTGAAACACCGTGGACGAA+AGG | - | chr3.2:24588035-24588054 | MS.gene001465:CDS | 50.0% | |
GGCTTCTTTGCAGCAGGTAA+AGG | + | chr3.2:24588608-24588627 | None:intergenic | 50.0% | |
GGTGGTGATCTGATCTTCAG+CGG | + | chr3.2:24588306-24588325 | None:intergenic | 50.0% | |
GTGAAAGGAGTAGCAGTGGT+GGG | + | chr3.2:24587987-24588006 | None:intergenic | 50.0% | |
TCCTTCCTACTGACAGGCTT+TGG | - | chr3.2:24588400-24588419 | MS.gene001465:CDS | 50.0% | |
TCTTACGTTGGAAGCAGAGC+TGG | + | chr3.2:24588348-24588367 | None:intergenic | 50.0% | |
TGACGATCCAACTCCTTCAG+AGG | + | chr3.2:24588498-24588517 | None:intergenic | 50.0% | |
TGTGAAAGGAGTAGCAGTGG+TGG | + | chr3.2:24587988-24588007 | None:intergenic | 50.0% | |
! | ACGATCAAAGCGTTCTCGCA+TGG | - | chr3.2:24588061-24588080 | MS.gene001465:CDS | 50.0% |
! | CACAAGCGTTGTCACTACGA+AGG | - | chr3.2:24588428-24588447 | MS.gene001465:CDS | 50.0% |
! | GGTTCCTCAAAGGGTGTGAA+AGG | + | chr3.2:24588002-24588021 | None:intergenic | 50.0% |
! | GTAACTGCCTCTGAAGGAGT+TGG | - | chr3.2:24588488-24588507 | MS.gene001465:CDS | 50.0% |
! | TCTTAACCTCCCGGCTTTTC+CGG | - | chr3.2:24588541-24588560 | MS.gene001465:CDS | 50.0% |
!! | ACTGGCTTTGTGTCCACCTA+GGG | + | chr3.2:24588255-24588274 | None:intergenic | 50.0% |
!! | GAAGCCCTGTCTTTTCAAGC+TGG | - | chr3.2:24588622-24588641 | MS.gene001465:CDS | 50.0% |
AAAAGTCCGGAAAAGCCGGG+AGG | + | chr3.2:24588550-24588569 | None:intergenic | 55.0% | |
AGACAGGGCTTCTTTGCAGC+AGG | + | chr3.2:24588614-24588633 | None:intergenic | 55.0% | |
AGCGCTGTAACTGCCTCTGA+AGG | - | chr3.2:24588482-24588501 | MS.gene001465:CDS | 55.0% | |
CCCAAAGCCTGTCAGTAGGA+AGG | + | chr3.2:24588404-24588423 | None:intergenic | 55.0% | |
CTCATCATGCTTGCTCGCAG+CGG | - | chr3.2:24588125-24588144 | MS.gene001465:CDS | 55.0% | |
CTGATCTTCAGCGGTGGTTG+CGG | + | chr3.2:24588297-24588316 | None:intergenic | 55.0% | |
GGAAGCAGAGCTGGTAGTCA+CGG | + | chr3.2:24588339-24588358 | None:intergenic | 55.0% | |
GGGTGTGAAAGGAGTAGCAG+TGG | + | chr3.2:24587991-24588010 | None:intergenic | 55.0% | |
GGTGATCTGATCTTCAGCGG+TGG | + | chr3.2:24588303-24588322 | None:intergenic | 55.0% | |
GTGGACACAAAGCCAGTCAC+CGG | - | chr3.2:24588258-24588277 | MS.gene001465:intron | 55.0% | |
TACAGCGCTACTTCCAGCAC+CGG | + | chr3.2:24588471-24588490 | None:intergenic | 55.0% | |
TCCTCCCAAAGCCTGTCAGT+AGG | + | chr3.2:24588408-24588427 | None:intergenic | 55.0% | |
TGTCACTACGAAGGCAGCGT+TGG | - | chr3.2:24588437-24588456 | MS.gene001465:CDS | 55.0% | |
!! | GACTGGCTTTGTGTCCACCT+AGG | + | chr3.2:24588256-24588275 | None:intergenic | 55.0% |
!! | TCCTACTGACAGGCTTTGGG+AGG | - | chr3.2:24588404-24588423 | MS.gene001465:CDS | 55.0% |
AGCAGAGCTGGTAGTCACGG+CGG | + | chr3.2:24588336-24588355 | None:intergenic | 60.0% | |
AGTCACGGCGGATGAAGTGG+TGG | + | chr3.2:24588324-24588343 | None:intergenic | 60.0% | |
GGTAGTCACGGCGGATGAAG+TGG | + | chr3.2:24588327-24588346 | None:intergenic | 60.0% | |
!! | TACGAAGGCAGCGTTGGTGC+CGG | - | chr3.2:24588443-24588462 | MS.gene001465:CDS | 60.0% |
!! | GCTACTTCCAGCACCGGCAC+CGG | + | chr3.2:24588465-24588484 | None:intergenic | 65.0% |
!! | GGCAGCGTTGGTGCCGGTGC+CGG | - | chr3.2:24588449-24588468 | MS.gene001465:CDS | 75.0% |
!! | GTTGGTGCCGGTGCCGGTGC+TGG | - | chr3.2:24588455-24588474 | MS.gene001465:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 24587960 | 24588664 | 24587960 | ID=MS.gene001465 |
chr3.2 | mRNA | 24587960 | 24588664 | 24587960 | ID=MS.gene001465.t1;Parent=MS.gene001465 |
chr3.2 | exon | 24588263 | 24588664 | 24588263 | ID=MS.gene001465.t1.exon1;Parent=MS.gene001465.t1 |
chr3.2 | CDS | 24588263 | 24588664 | 24588263 | ID=cds.MS.gene001465.t1;Parent=MS.gene001465.t1 |
chr3.2 | exon | 24587960 | 24588208 | 24587960 | ID=MS.gene001465.t1.exon2;Parent=MS.gene001465.t1 |
chr3.2 | CDS | 24587960 | 24588208 | 24587960 | ID=cds.MS.gene001465.t1;Parent=MS.gene001465.t1 |
Gene Sequence |
Protein sequence |