Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24464.t1 | XP_003589096.1 | 92.4 | 236 | 13 | 3 | 1 | 235 | 1 | 232 | 2.20E-95 | 358.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24464.t1 | O22533 | 58.3 | 228 | 79 | 8 | 1 | 214 | 1 | 226 | 7.8e-41 | 168.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24464.t1 | Q53EI9 | 92.4 | 236 | 13 | 3 | 1 | 235 | 1 | 232 | 1.6e-95 | 358.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene24464.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene001465 | MS.gene24464 | PPI |
MS.gene015091 | MS.gene24464 | PPI |
MS.gene38598 | MS.gene24464 | PPI |
MS.gene001466 | MS.gene24464 | PPI |
MS.gene00489 | MS.gene24464 | PPI |
MS.gene24464 | MS.gene001466 | PPI |
MS.gene044101 | MS.gene24464 | PPI |
MS.gene66447 | MS.gene24464 | PPI |
MS.gene38597 | MS.gene24464 | PPI |
MS.gene32887 | MS.gene24464 | PPI |
MS.gene012885 | MS.gene24464 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24464.t1 | MTR_1g018420 | 95.339 | 236 | 6 | 3 | 1 | 235 | 1 | 232 | 2.68e-167 | 461 |
MS.gene24464.t1 | MTR_3g102980 | 60.324 | 247 | 71 | 10 | 1 | 233 | 1 | 234 | 1.83e-82 | 246 |
MS.gene24464.t1 | MTR_1g106730 | 43.396 | 265 | 84 | 13 | 1 | 224 | 3 | 242 | 1.01e-47 | 158 |
MS.gene24464.t1 | MTR_1g062780 | 35.567 | 194 | 89 | 7 | 43 | 203 | 81 | 271 | 2.34e-21 | 90.5 |
MS.gene24464.t1 | MTR_4g027440 | 51.190 | 84 | 41 | 0 | 80 | 163 | 220 | 303 | 1.97e-20 | 89.0 |
MS.gene24464.t1 | MTR_0160s0030 | 38.849 | 139 | 60 | 5 | 71 | 209 | 231 | 344 | 1.61e-17 | 80.5 |
MS.gene24464.t1 | MTR_4g109340 | 39.490 | 157 | 57 | 9 | 73 | 199 | 341 | 489 | 1.38e-16 | 78.6 |
MS.gene24464.t1 | MTR_7g100100 | 35.294 | 119 | 68 | 1 | 80 | 198 | 34 | 143 | 3.84e-16 | 73.6 |
MS.gene24464.t1 | MTR_5g062300 | 48.352 | 91 | 40 | 3 | 79 | 162 | 118 | 208 | 5.23e-16 | 75.1 |
MS.gene24464.t1 | MTR_1g090703 | 30.180 | 222 | 107 | 8 | 21 | 196 | 81 | 300 | 6.84e-16 | 75.9 |
MS.gene24464.t1 | MTR_1g067650 | 29.412 | 170 | 89 | 4 | 32 | 194 | 3 | 148 | 6.52e-15 | 70.5 |
MS.gene24464.t1 | MTR_5g099040 | 43.119 | 109 | 37 | 3 | 80 | 164 | 130 | 237 | 8.48e-15 | 72.0 |
MS.gene24464.t1 | MTR_1g067640 | 29.412 | 170 | 89 | 4 | 32 | 194 | 2 | 147 | 9.34e-15 | 70.1 |
MS.gene24464.t1 | MTR_1g115345 | 43.902 | 82 | 37 | 2 | 80 | 160 | 45 | 118 | 1.63e-14 | 70.1 |
MS.gene24464.t1 | MTR_7g023560 | 33.577 | 137 | 67 | 5 | 32 | 167 | 2 | 115 | 1.08e-13 | 67.4 |
MS.gene24464.t1 | MTR_1g067660 | 33.582 | 134 | 66 | 3 | 38 | 171 | 6 | 116 | 2.52e-13 | 66.2 |
MS.gene24464.t1 | MTR_4g057230 | 29.878 | 164 | 68 | 4 | 44 | 160 | 67 | 230 | 6.86e-12 | 63.9 |
MS.gene24464.t1 | MTR_4g100860 | 28.788 | 198 | 100 | 6 | 14 | 196 | 130 | 301 | 3.95e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene24464.t1 | AT1G27730 | 50.202 | 247 | 87 | 11 | 1 | 231 | 1 | 227 | 2.50e-59 | 187 |
MS.gene24464.t1 | AT5G04340 | 51.092 | 229 | 96 | 8 | 1 | 215 | 1 | 227 | 3.77e-53 | 171 |
MS.gene24464.t1 | AT3G19580 | 40.945 | 254 | 102 | 7 | 1 | 212 | 1 | 248 | 9.30e-47 | 156 |
MS.gene24464.t1 | AT3G19580 | 40.945 | 254 | 102 | 7 | 1 | 212 | 1 | 248 | 9.30e-47 | 156 |
MS.gene24464.t1 | AT5G43170 | 45.106 | 235 | 74 | 10 | 1 | 223 | 1 | 192 | 3.19e-43 | 145 |
MS.gene24464.t1 | AT5G67450 | 40.249 | 241 | 95 | 8 | 1 | 196 | 1 | 237 | 3.87e-36 | 128 |
MS.gene24464.t1 | AT3G49930 | 43.500 | 200 | 69 | 8 | 25 | 209 | 36 | 206 | 6.25e-36 | 127 |
MS.gene24464.t1 | AT2G28200 | 37.629 | 194 | 89 | 7 | 37 | 199 | 70 | 262 | 4.32e-25 | 100 |
MS.gene24464.t1 | AT3G60580 | 37.912 | 182 | 83 | 5 | 38 | 209 | 122 | 283 | 4.86e-24 | 97.4 |
MS.gene24464.t1 | AT2G45120 | 38.554 | 166 | 84 | 4 | 38 | 196 | 146 | 300 | 6.74e-23 | 95.1 |
MS.gene24464.t1 | AT1G49900 | 52.809 | 89 | 34 | 2 | 80 | 167 | 193 | 274 | 4.81e-21 | 92.0 |
MS.gene24464.t1 | AT1G49900 | 47.059 | 102 | 43 | 2 | 79 | 179 | 749 | 840 | 2.07e-20 | 90.1 |
MS.gene24464.t1 | AT5G03510 | 32.292 | 192 | 98 | 4 | 39 | 199 | 69 | 259 | 8.17e-20 | 86.3 |
MS.gene24464.t1 | AT5G04390 | 29.310 | 232 | 110 | 8 | 39 | 231 | 96 | 312 | 8.31e-18 | 81.6 |
MS.gene24464.t1 | AT1G02040 | 32.812 | 192 | 90 | 8 | 5 | 161 | 61 | 248 | 1.88e-17 | 80.1 |
MS.gene24464.t1 | AT5G56200 | 43.956 | 91 | 40 | 1 | 82 | 161 | 344 | 434 | 1.47e-16 | 78.6 |
MS.gene24464.t1 | AT2G37430 | 37.594 | 133 | 61 | 4 | 32 | 160 | 2 | 116 | 5.23e-16 | 73.6 |
MS.gene24464.t1 | AT4G35280 | 35.938 | 128 | 59 | 4 | 39 | 162 | 138 | 246 | 5.44e-16 | 75.5 |
MS.gene24464.t1 | AT3G46090 | 35.385 | 130 | 59 | 3 | 38 | 167 | 11 | 115 | 1.92e-15 | 72.0 |
MS.gene24464.t1 | AT1G02030 | 45.679 | 81 | 35 | 1 | 80 | 160 | 160 | 231 | 4.68e-15 | 72.8 |
MS.gene24464.t1 | AT3G53600 | 31.361 | 169 | 90 | 6 | 32 | 194 | 2 | 150 | 1.02e-14 | 70.1 |
MS.gene24464.t1 | AT2G28710 | 35.593 | 118 | 45 | 3 | 43 | 160 | 14 | 100 | 2.97e-14 | 68.6 |
MS.gene24464.t1 | AT2G17180 | 30.675 | 163 | 77 | 5 | 39 | 196 | 121 | 252 | 1.10e-13 | 68.9 |
MS.gene24464.t1 | AT3G46080 | 44.048 | 84 | 37 | 2 | 77 | 160 | 34 | 107 | 2.15e-13 | 66.2 |
MS.gene24464.t1 | AT5G61470 | 40.000 | 85 | 33 | 2 | 80 | 161 | 228 | 297 | 1.41e-12 | 66.2 |
MS.gene24464.t1 | AT5G59820 | 34.091 | 132 | 55 | 6 | 46 | 174 | 18 | 120 | 3.55e-12 | 62.8 |
MS.gene24464.t1 | AT3G10470 | 30.000 | 180 | 68 | 5 | 39 | 160 | 104 | 283 | 5.67e-12 | 65.1 |
MS.gene24464.t1 | AT3G46070 | 36.667 | 90 | 49 | 2 | 71 | 160 | 27 | 108 | 1.82e-11 | 61.2 |
Find 58 sgRNAs with CRISPR-Local
Find 64 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTTCATCGAAGGTGAATTT+AGG | 0.257514 | 1.1:+4499195 | None:intergenic |
CGTTTAGTCCATGGAAGATT+TGG | 0.286174 | 1.1:+4499174 | None:intergenic |
AAAATTCGGAATTTCAATCT+TGG | 0.317164 | 1.1:+4498555 | None:intergenic |
AGAACATTTGTAACTGAGTT+TGG | 0.333314 | 1.1:+4499008 | None:intergenic |
CCGGAGTTTGCTAATAAGAT+TGG | 0.334097 | 1.1:-4498643 | MS.gene24464:CDS |
ATTATTCATCACTGAAAATT+CGG | 0.339013 | 1.1:+4498541 | None:intergenic |
TTGTCAATGGTTGTTGGTGG+TGG | 0.368111 | 1.1:+4499042 | None:intergenic |
TTTCCGACAGGACAAGCTTT+GGG | 0.386450 | 1.1:-4498796 | MS.gene24464:CDS |
AACTCCGTCGGTGGCGGTGT+TGG | 0.405927 | 1.1:-4498922 | MS.gene24464:CDS |
AGTGCATGAACGTGAACGTT+TGG | 0.411256 | 1.1:+4499143 | None:intergenic |
AAATTCGGAATTTCAATCTT+GGG | 0.411878 | 1.1:+4498556 | None:intergenic |
TCTGAATATCCCGGCTTATC+CGG | 0.414206 | 1.1:-4498662 | MS.gene24464:CDS |
GTTTCCGACAGGACAAGCTT+TGG | 0.428305 | 1.1:-4498797 | MS.gene24464:CDS |
GATTCAAAGGCTTGAAATCA+TGG | 0.448405 | 1.1:+4499064 | None:intergenic |
TTCTTCATCATCACAGGATG+AGG | 0.458403 | 1.1:+4498601 | None:intergenic |
TTGTTGTTGTCAATGGTTGT+TGG | 0.473433 | 1.1:+4499036 | None:intergenic |
AATTTAGGAGTAGTAGAAGT+GGG | 0.488875 | 1.1:+4499210 | None:intergenic |
CACTACGAAGGTGTTGTTGG+TGG | 0.490444 | 1.1:-4498757 | MS.gene24464:CDS |
GCTTTCTTCTTCATCATCAC+AGG | 0.490449 | 1.1:+4498595 | None:intergenic |
TCCGTCGGTGGCGGTGTTGG+TGG | 0.493089 | 1.1:-4498919 | MS.gene24464:CDS |
TGAGCTTGTGGTTGCAGCTG+AGG | 0.495728 | 1.1:+4498876 | None:intergenic |
TTAGCAAACTCCGGATAAGC+CGG | 0.495798 | 1.1:+4498652 | None:intergenic |
GAATTTAGGAGTAGTAGAAG+TGG | 0.499359 | 1.1:+4499209 | None:intergenic |
ATGAGTGTTCGATTTGTCAT+AGG | 0.501927 | 1.1:-4498822 | MS.gene24464:CDS |
ACTTGCTTTGTGTCCACCGA+GGG | 0.502207 | 1.1:+4498954 | None:intergenic |
ACTACGAAGGTGTTGTTGGT+GGG | 0.505453 | 1.1:-4498756 | MS.gene24464:CDS |
TGTCATAGGTCGTTTCCGAC+AGG | 0.511441 | 1.1:-4498808 | MS.gene24464:CDS |
TTGTTGTCAATGGTTGTTGG+TGG | 0.511574 | 1.1:+4499039 | None:intergenic |
CTACGAAGGTGTTGTTGGTG+GGG | 0.511916 | 1.1:-4498755 | MS.gene24464:CDS |
GTTGCAGCTGAGGAAGTTGA+TGG | 0.514028 | 1.1:+4498886 | None:intergenic |
GAACGTTTACGTTTAGTCCA+TGG | 0.532372 | 1.1:+4499165 | None:intergenic |
GTTGTTGGTGGTGGATTCAA+AGG | 0.535966 | 1.1:+4499051 | None:intergenic |
TGTCACTACGAAGGTGTTGT+TGG | 0.546239 | 1.1:-4498760 | MS.gene24464:CDS |
TCGATGAACCAAATCTTCCA+TGG | 0.550148 | 1.1:-4499182 | MS.gene24464:CDS |
TACGAAGGTGTTGTTGGTGG+GGG | 0.550558 | 1.1:-4498754 | MS.gene24464:CDS |
CCAATCTTATTAGCAAACTC+CGG | 0.554584 | 1.1:+4498643 | None:intergenic |
CCACCCAAAGCTTGTCCTGT+CGG | 0.557784 | 1.1:+4498793 | None:intergenic |
TGATTTCGATCTGAATATCC+CGG | 0.576158 | 1.1:-4498671 | MS.gene24464:CDS |
CCGACAGGACAAGCTTTGGG+TGG | 0.581171 | 1.1:-4498793 | MS.gene24464:CDS |
AGCTCAGCCAACACAAACGC+TGG | 0.582947 | 1.1:-4498859 | MS.gene24464:CDS |
TGAAATCATGGCGGTTGGTG+TGG | 0.583151 | 1.1:+4499076 | None:intergenic |
TAGCAAACTCCGGATAAGCC+GGG | 0.583949 | 1.1:+4498653 | None:intergenic |
AGGCTTGAAATCATGGCGGT+TGG | 0.583949 | 1.1:+4499071 | None:intergenic |
TCTGCTATAACTGTCTCTGA+AGG | 0.590024 | 1.1:-4498721 | MS.gene24464:CDS |
TGTCTCATCATGCTCGCTCG+TGG | 0.591916 | 1.1:-4499099 | MS.gene24464:CDS |
TATAACTGTCTCTGAAGGTG+TGG | 0.592472 | 1.1:-4498716 | MS.gene24464:CDS |
GTTTGTGTTGGCTGAGCTTG+TGG | 0.592566 | 1.1:+4498864 | None:intergenic |
TGGAAGATTTGGTTCATCGA+AGG | 0.595055 | 1.1:+4499185 | None:intergenic |
AACACCGCCAGCGTTTGTGT+TGG | 0.599705 | 1.1:+4498852 | None:intergenic |
ATAACTGTCTCTGAAGGTGT+GGG | 0.609017 | 1.1:-4498715 | MS.gene24464:CDS |
GACTTGCTTTGTGTCCACCG+AGG | 0.621099 | 1.1:+4498953 | None:intergenic |
TCTTCTTATCAAGCCCTCGG+TGG | 0.636904 | 1.1:-4498967 | MS.gene24464:CDS |
ACCACCAACACCGCCACCGA+CGG | 0.639061 | 1.1:+4498918 | None:intergenic |
ATCACGTTGATGACTATGTG+TGG | 0.647702 | 1.1:+4498690 | None:intergenic |
TCAGCCAACACAAACGCTGG+CGG | 0.666871 | 1.1:-4498856 | MS.gene24464:CDS |
TTGCAGCTGAGGAAGTTGAT+GGG | 0.673304 | 1.1:+4498887 | None:intergenic |
CACAAACGTTGTCACTACGA+AGG | 0.683725 | 1.1:-4498769 | MS.gene24464:CDS |
TCAAAGGCTTGAAATCATGG+CGG | 0.753429 | 1.1:+4499067 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAAATTCGGAATTTCAATCT+TGG | + | chr1.1:4499231-4499250 | None:intergenic | 25.0% |
! | AAATTCGGAATTTCAATCTT+GGG | + | chr1.1:4499230-4499249 | None:intergenic | 25.0% |
AATTTAGGAGTAGTAGAAGT+GGG | + | chr1.1:4498576-4498595 | None:intergenic | 30.0% | |
AGAACATTTGTAACTGAGTT+TGG | + | chr1.1:4498778-4498797 | None:intergenic | 30.0% | |
CCAATCTTATTAGCAAACTC+CGG | + | chr1.1:4499143-4499162 | None:intergenic | 35.0% | |
GAATTTAGGAGTAGTAGAAG+TGG | + | chr1.1:4498577-4498596 | None:intergenic | 35.0% | |
GATTCAAAGGCTTGAAATCA+TGG | + | chr1.1:4498722-4498741 | None:intergenic | 35.0% | |
TGATTTCGATCTGAATATCC+CGG | - | chr1.1:4499112-4499131 | MS.gene24464:CDS | 35.0% | |
! | ATGAGTGTTCGATTTGTCAT+AGG | - | chr1.1:4498961-4498980 | MS.gene24464:CDS | 35.0% |
! | TTGTTGTTGTCAATGGTTGT+TGG | + | chr1.1:4498750-4498769 | None:intergenic | 35.0% |
! | TTTTCTTCTTATCAAGCCCT+CGG | - | chr1.1:4498813-4498832 | MS.gene24464:CDS | 35.0% |
CGTTTAGTCCATGGAAGATT+TGG | + | chr1.1:4498612-4498631 | None:intergenic | 40.0% | |
GAACGTTTACGTTTAGTCCA+TGG | + | chr1.1:4498621-4498640 | None:intergenic | 40.0% | |
GCTTTCTTCTTCATCATCAC+AGG | + | chr1.1:4499191-4499210 | None:intergenic | 40.0% | |
GGTTCATCGAAGGTGAATTT+AGG | + | chr1.1:4498591-4498610 | None:intergenic | 40.0% | |
TCAAAGGCTTGAAATCATGG+CGG | + | chr1.1:4498719-4498738 | None:intergenic | 40.0% | |
TCGATGAACCAAATCTTCCA+TGG | - | chr1.1:4498601-4498620 | MS.gene24464:CDS | 40.0% | |
TCTGCTATAACTGTCTCTGA+AGG | - | chr1.1:4499062-4499081 | MS.gene24464:CDS | 40.0% | |
TTCTTCATCATCACAGGATG+AGG | + | chr1.1:4499185-4499204 | None:intergenic | 40.0% | |
TTGTTGTCAATGGTTGTTGG+TGG | + | chr1.1:4498747-4498766 | None:intergenic | 40.0% | |
! | ATAACTGTCTCTGAAGGTGT+GGG | - | chr1.1:4499068-4499087 | MS.gene24464:CDS | 40.0% |
! | TATAACTGTCTCTGAAGGTG+TGG | - | chr1.1:4499067-4499086 | MS.gene24464:CDS | 40.0% |
! | TGGAAGATTTGGTTCATCGA+AGG | + | chr1.1:4498601-4498620 | None:intergenic | 40.0% |
!! | ATCACGTTGATGACTATGTG+TGG | + | chr1.1:4499096-4499115 | None:intergenic | 40.0% |
!! | CCGGAGTTTGCTAATAAGAT+TGG | - | chr1.1:4499140-4499159 | MS.gene24464:CDS | 40.0% |
!! | GGTGTTGTTGTTGTTGTCAA+TGG | + | chr1.1:4498757-4498776 | None:intergenic | 40.0% |
AGTGCATGAACGTGAACGTT+TGG | + | chr1.1:4498643-4498662 | None:intergenic | 45.0% | |
CACAAACGTTGTCACTACGA+AGG | - | chr1.1:4499014-4499033 | MS.gene24464:CDS | 45.0% | |
TCTGAATATCCCGGCTTATC+CGG | - | chr1.1:4499121-4499140 | MS.gene24464:CDS | 45.0% | |
TTAGCAAACTCCGGATAAGC+CGG | + | chr1.1:4499134-4499153 | None:intergenic | 45.0% | |
TTTCCGACAGGACAAGCTTT+GGG | - | chr1.1:4498987-4499006 | MS.gene24464:CDS | 45.0% | |
! | GAAGAAAGCTCGTGTTTTCG+TGG | - | chr1.1:4499202-4499221 | MS.gene24464:CDS | 45.0% |
! | TTGCAGCTGAGGAAGTTGAT+GGG | + | chr1.1:4498899-4498918 | None:intergenic | 45.0% |
! | TTGTCAATGGTTGTTGGTGG+TGG | + | chr1.1:4498744-4498763 | None:intergenic | 45.0% |
!! | ACTACGAAGGTGTTGTTGGT+GGG | - | chr1.1:4499027-4499046 | MS.gene24464:CDS | 45.0% |
!! | GTTGTTGGTGGTGGATTCAA+AGG | + | chr1.1:4498735-4498754 | None:intergenic | 45.0% |
!! | TGTCACTACGAAGGTGTTGT+TGG | - | chr1.1:4499023-4499042 | MS.gene24464:CDS | 45.0% |
ACTTGCTTTGTGTCCACCGA+GGG | + | chr1.1:4498832-4498851 | None:intergenic | 50.0% | |
AGGCTTGAAATCATGGCGGT+TGG | + | chr1.1:4498715-4498734 | None:intergenic | 50.0% | |
AGTCACCGCAAAAACTCCGT+CGG | - | chr1.1:4498849-4498868 | MS.gene24464:CDS | 50.0% | |
GTTGCAGCTGAGGAAGTTGA+TGG | + | chr1.1:4498900-4498919 | None:intergenic | 50.0% | |
GTTTCCGACAGGACAAGCTT+TGG | - | chr1.1:4498986-4499005 | MS.gene24464:CDS | 50.0% | |
TAGCAAACTCCGGATAAGCC+GGG | + | chr1.1:4499133-4499152 | None:intergenic | 50.0% | |
TCTTCTTATCAAGCCCTCGG+TGG | - | chr1.1:4498816-4498835 | MS.gene24464:CDS | 50.0% | |
TGTCATAGGTCGTTTCCGAC+AGG | - | chr1.1:4498975-4498994 | MS.gene24464:CDS | 50.0% | |
! | TGAAATCATGGCGGTTGGTG+TGG | + | chr1.1:4498710-4498729 | None:intergenic | 50.0% |
!! | CACTACGAAGGTGTTGTTGG+TGG | - | chr1.1:4499026-4499045 | MS.gene24464:CDS | 50.0% |
!! | CTACGAAGGTGTTGTTGGTG+GGG | - | chr1.1:4499028-4499047 | MS.gene24464:CDS | 50.0% |
!! | GTTTGTGTTGGCTGAGCTTG+TGG | + | chr1.1:4498922-4498941 | None:intergenic | 50.0% |
!! | TACGAAGGTGTTGTTGGTGG+GGG | - | chr1.1:4499029-4499048 | MS.gene24464:CDS | 50.0% |
AACACCGCCAGCGTTTGTGT+TGG | + | chr1.1:4498934-4498953 | None:intergenic | 55.0% | |
AGCTCAGCCAACACAAACGC+TGG | - | chr1.1:4498924-4498943 | MS.gene24464:CDS | 55.0% | |
CCACCCAAAGCTTGTCCTGT+CGG | + | chr1.1:4498993-4499012 | None:intergenic | 55.0% | |
TCAGCCAACACAAACGCTGG+CGG | - | chr1.1:4498927-4498946 | MS.gene24464:CDS | 55.0% | |
TGAGCTTGTGGTTGCAGCTG+AGG | + | chr1.1:4498910-4498929 | None:intergenic | 55.0% | |
TGTCTCATCATGCTCGCTCG+TGG | - | chr1.1:4498684-4498703 | MS.gene24464:CDS | 55.0% | |
! | GACTTGCTTTGTGTCCACCG+AGG | + | chr1.1:4498833-4498852 | None:intergenic | 55.0% |
CACCGCAAAAACTCCGTCGG+TGG | - | chr1.1:4498852-4498871 | MS.gene24464:CDS | 60.0% | |
CGCAAAAACTCCGTCGGTGG+CGG | - | chr1.1:4498855-4498874 | MS.gene24464:CDS | 60.0% | |
! | CGCCACCGACGGAGTTTTTG+CGG | + | chr1.1:4498857-4498876 | None:intergenic | 60.0% |
!! | CCGACAGGACAAGCTTTGGG+TGG | - | chr1.1:4498990-4499009 | MS.gene24464:CDS | 60.0% |
ACCACCAACACCGCCACCGA+CGG | + | chr1.1:4498868-4498887 | None:intergenic | 65.0% | |
! | AACTCCGTCGGTGGCGGTGT+TGG | - | chr1.1:4498861-4498880 | MS.gene24464:CDS | 65.0% |
! | TCCGTCGGTGGCGGTGTTGG+TGG | - | chr1.1:4498864-4498883 | MS.gene24464:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 4498549 | 4499256 | 4498549 | ID=MS.gene24464 |
chr1.1 | mRNA | 4498549 | 4499256 | 4498549 | ID=MS.gene24464.t1;Parent=MS.gene24464 |
chr1.1 | exon | 4498549 | 4499256 | 4498549 | ID=MS.gene24464.t1.exon1;Parent=MS.gene24464.t1 |
chr1.1 | CDS | 4498549 | 4499256 | 4498549 | ID=cds.MS.gene24464.t1;Parent=MS.gene24464.t1 |
Gene Sequence |
Protein sequence |