Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044101.t1 | XP_003589096.1 | 96.6 | 236 | 4 | 2 | 1 | 236 | 1 | 232 | 6.90E-97 | 363.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044101.t1 | O22533 | 58.8 | 228 | 79 | 7 | 1 | 215 | 1 | 226 | 2.4e-37 | 157.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044101.t1 | Q53EI9 | 96.6 | 236 | 4 | 2 | 1 | 236 | 1 | 232 | 4.9e-97 | 363.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene044101.t1 | TF | C2H2 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene015091 | MS.gene044101 | PPI |
MS.gene38597 | MS.gene044101 | PPI |
MS.gene044101 | MS.gene012885 | PPI |
MS.gene001465 | MS.gene044101 | PPI |
MS.gene00489 | MS.gene044101 | PPI |
MS.gene044101 | MS.gene38598 | PPI |
MS.gene044101 | MS.gene001466 | PPI |
MS.gene044101 | MS.gene66447 | PPI |
MS.gene044101 | MS.gene24464 | PPI |
MS.gene044101 | MS.gene32887 | PPI |
MS.gene044101 | MS.gene00489 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044101.t1 | MTR_1g018420 | 96.186 | 236 | 5 | 2 | 1 | 236 | 1 | 232 | 2.78e-170 | 468 |
MS.gene044101.t1 | MTR_3g102980 | 60.887 | 248 | 69 | 10 | 1 | 234 | 1 | 234 | 7.52e-83 | 247 |
MS.gene044101.t1 | MTR_1g106730 | 43.233 | 266 | 84 | 13 | 1 | 225 | 3 | 242 | 6.64e-48 | 158 |
MS.gene044101.t1 | MTR_1g062780 | 35.417 | 192 | 93 | 7 | 43 | 204 | 81 | 271 | 2.13e-22 | 93.2 |
MS.gene044101.t1 | MTR_4g027440 | 50.000 | 84 | 42 | 0 | 81 | 164 | 220 | 303 | 7.04e-20 | 87.4 |
MS.gene044101.t1 | MTR_4g028610 | 29.630 | 243 | 95 | 6 | 25 | 203 | 134 | 364 | 1.87e-18 | 84.0 |
MS.gene044101.t1 | MTR_0160s0030 | 32.524 | 206 | 81 | 6 | 38 | 210 | 164 | 344 | 3.13e-18 | 82.8 |
MS.gene044101.t1 | MTR_4g109340 | 39.490 | 157 | 57 | 8 | 74 | 200 | 341 | 489 | 6.00e-17 | 79.7 |
MS.gene044101.t1 | MTR_7g100100 | 36.134 | 119 | 67 | 2 | 81 | 199 | 34 | 143 | 3.32e-16 | 73.9 |
MS.gene044101.t1 | MTR_5g099040 | 44.954 | 109 | 35 | 3 | 81 | 165 | 130 | 237 | 6.23e-16 | 75.5 |
MS.gene044101.t1 | MTR_5g062300 | 48.352 | 91 | 40 | 3 | 80 | 163 | 118 | 208 | 9.88e-16 | 74.3 |
MS.gene044101.t1 | MTR_1g090703 | 28.251 | 223 | 111 | 7 | 21 | 197 | 81 | 300 | 1.76e-15 | 74.7 |
MS.gene044101.t1 | MTR_1g067650 | 32.258 | 124 | 65 | 3 | 79 | 195 | 37 | 148 | 1.32e-14 | 69.7 |
MS.gene044101.t1 | MTR_1g115345 | 43.902 | 82 | 37 | 2 | 81 | 161 | 45 | 118 | 1.76e-14 | 70.1 |
MS.gene044101.t1 | MTR_1g067640 | 32.258 | 124 | 65 | 3 | 79 | 195 | 36 | 147 | 1.78e-14 | 69.3 |
MS.gene044101.t1 | MTR_7g023560 | 32.168 | 143 | 62 | 5 | 32 | 168 | 2 | 115 | 7.09e-14 | 68.2 |
MS.gene044101.t1 | MTR_1g067660 | 37.500 | 96 | 46 | 2 | 79 | 172 | 33 | 116 | 4.22e-13 | 65.5 |
MS.gene044101.t1 | MTR_4g057230 | 31.098 | 164 | 67 | 5 | 44 | 161 | 67 | 230 | 2.84e-12 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene044101.t1 | AT1G27730 | 51.613 | 248 | 83 | 11 | 1 | 232 | 1 | 227 | 1.90e-61 | 192 |
MS.gene044101.t1 | AT5G04340 | 51.092 | 229 | 97 | 7 | 1 | 216 | 1 | 227 | 2.62e-52 | 169 |
MS.gene044101.t1 | AT3G19580 | 42.023 | 257 | 96 | 9 | 1 | 213 | 1 | 248 | 2.22e-46 | 155 |
MS.gene044101.t1 | AT3G19580 | 42.023 | 257 | 96 | 9 | 1 | 213 | 1 | 248 | 2.22e-46 | 155 |
MS.gene044101.t1 | AT5G43170 | 46.186 | 236 | 71 | 10 | 1 | 224 | 1 | 192 | 1.85e-44 | 148 |
MS.gene044101.t1 | AT5G67450 | 39.669 | 242 | 96 | 7 | 1 | 197 | 1 | 237 | 4.89e-36 | 128 |
MS.gene044101.t1 | AT3G49930 | 40.000 | 205 | 70 | 6 | 25 | 210 | 36 | 206 | 3.61e-35 | 125 |
MS.gene044101.t1 | AT2G28200 | 36.139 | 202 | 82 | 8 | 37 | 200 | 70 | 262 | 1.53e-24 | 99.0 |
MS.gene044101.t1 | AT3G60580 | 38.462 | 182 | 83 | 5 | 38 | 210 | 122 | 283 | 1.09e-23 | 96.7 |
MS.gene044101.t1 | AT2G45120 | 38.554 | 166 | 85 | 4 | 38 | 197 | 146 | 300 | 1.21e-23 | 97.1 |
MS.gene044101.t1 | AT1G49900 | 43.802 | 121 | 60 | 3 | 50 | 168 | 160 | 274 | 1.82e-21 | 93.2 |
MS.gene044101.t1 | AT1G49900 | 48.544 | 103 | 40 | 3 | 80 | 180 | 749 | 840 | 3.25e-20 | 89.4 |
MS.gene044101.t1 | AT5G03510 | 30.769 | 195 | 98 | 5 | 39 | 200 | 69 | 259 | 4.38e-18 | 81.6 |
MS.gene044101.t1 | AT5G04390 | 28.879 | 232 | 112 | 8 | 39 | 232 | 96 | 312 | 1.36e-17 | 80.9 |
MS.gene044101.t1 | AT1G02040 | 32.804 | 189 | 95 | 6 | 5 | 162 | 61 | 248 | 8.57e-17 | 78.2 |
MS.gene044101.t1 | AT5G56200 | 42.735 | 117 | 52 | 3 | 83 | 186 | 344 | 458 | 2.71e-16 | 77.8 |
MS.gene044101.t1 | AT2G37430 | 37.313 | 134 | 61 | 4 | 32 | 161 | 2 | 116 | 9.02e-16 | 73.2 |
MS.gene044101.t1 | AT3G53600 | 30.769 | 169 | 92 | 5 | 32 | 195 | 2 | 150 | 1.71e-15 | 72.4 |
MS.gene044101.t1 | AT4G35280 | 37.405 | 131 | 54 | 5 | 39 | 163 | 138 | 246 | 2.52e-15 | 73.9 |
MS.gene044101.t1 | AT1G02030 | 45.679 | 81 | 35 | 1 | 81 | 161 | 160 | 231 | 3.83e-15 | 73.2 |
MS.gene044101.t1 | AT3G46090 | 43.182 | 88 | 38 | 2 | 81 | 168 | 40 | 115 | 1.90e-14 | 69.3 |
MS.gene044101.t1 | AT2G17180 | 30.723 | 166 | 74 | 6 | 39 | 197 | 121 | 252 | 7.81e-14 | 69.3 |
MS.gene044101.t1 | AT2G28710 | 36.364 | 121 | 41 | 3 | 43 | 161 | 14 | 100 | 1.07e-13 | 67.0 |
MS.gene044101.t1 | AT3G46080 | 44.186 | 86 | 34 | 2 | 78 | 161 | 34 | 107 | 1.10e-12 | 64.3 |
MS.gene044101.t1 | AT5G61470 | 40.000 | 85 | 33 | 2 | 81 | 162 | 228 | 297 | 1.21e-12 | 66.6 |
MS.gene044101.t1 | AT3G10470 | 31.111 | 180 | 67 | 5 | 39 | 161 | 104 | 283 | 1.43e-12 | 66.6 |
MS.gene044101.t1 | AT3G46070 | 38.043 | 92 | 49 | 2 | 70 | 161 | 25 | 108 | 1.12e-11 | 61.6 |
MS.gene044101.t1 | AT5G59820 | 37.037 | 108 | 52 | 3 | 73 | 179 | 31 | 123 | 2.12e-11 | 60.8 |
Find 60 sgRNAs with CRISPR-Local
Find 67 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTTCATCGAAGGTGAATTT+AGG | 0.179252 | 1.2:+4888671 | None:intergenic |
CGTTTAGTCCATGGAAGATT+AGG | 0.289571 | 1.2:+4888650 | None:intergenic |
AAAATTCGGAATTTCAATCT+TGG | 0.317164 | 1.2:+4888028 | None:intergenic |
AGAACATTTGTAACTGAGTT+TGG | 0.333314 | 1.2:+4888481 | None:intergenic |
CCGGAGTTTGCTAATAAGAT+TGG | 0.334097 | 1.2:-4888116 | MS.gene044101:CDS |
AACTCCGTCGGTGGCGGTGG+CGG | 0.338111 | 1.2:-4888395 | MS.gene044101:CDS |
ATTATTCATCACTGAAAATT+CGG | 0.339013 | 1.2:+4888014 | None:intergenic |
GTTCATCGAAGGTGAATTTA+GGG | 0.339272 | 1.2:+4888672 | None:intergenic |
TTGTCAATGGTTGTTGGTGG+TGG | 0.368111 | 1.2:+4888518 | None:intergenic |
TTTCCGACAGGACAAGCTTT+GGG | 0.386450 | 1.2:-4888269 | MS.gene044101:CDS |
TCCGTCGGTGGCGGTGGCGG+TGG | 0.387651 | 1.2:-4888392 | MS.gene044101:CDS |
AAATTCGGAATTTCAATCTT+GGG | 0.411878 | 1.2:+4888029 | None:intergenic |
TCTGAATATCCCGGCTTATC+CGG | 0.414206 | 1.2:-4888135 | MS.gene044101:CDS |
GTTTCCGACAGGACAAGCTT+TGG | 0.428305 | 1.2:-4888270 | MS.gene044101:CDS |
GATTCAAAGGCTTGAAATCA+TGG | 0.448405 | 1.2:+4888540 | None:intergenic |
TTCTTCATCATCACAGGATG+AGG | 0.458403 | 1.2:+4888074 | None:intergenic |
GTTGCAGCTGAGGAAGTTGT+TGG | 0.467673 | 1.2:+4888359 | None:intergenic |
TTGTTGTTGTCAATGGTTGT+TGG | 0.473433 | 1.2:+4888512 | None:intergenic |
CACTACGAAGGTGTTGTTGG+TGG | 0.490444 | 1.2:-4888230 | MS.gene044101:CDS |
GCTTTCTTCTTCATCATCAC+AGG | 0.490449 | 1.2:+4888068 | None:intergenic |
TGAGCTTGTGGTTGCAGCTG+AGG | 0.495728 | 1.2:+4888349 | None:intergenic |
TTAGCAAACTCCGGATAAGC+CGG | 0.495798 | 1.2:+4888125 | None:intergenic |
ATGAGTGTTCGATTTGTCAT+AGG | 0.501927 | 1.2:-4888295 | MS.gene044101:CDS |
ACTTGCTTTGTGTCCACCGA+GGG | 0.502207 | 1.2:+4888427 | None:intergenic |
ACTACGAAGGTGTTGTTGGT+GGG | 0.505453 | 1.2:-4888229 | MS.gene044101:CDS |
TGTCATAGGTCGTTTCCGAC+AGG | 0.511441 | 1.2:-4888281 | MS.gene044101:CDS |
TTGTTGTCAATGGTTGTTGG+TGG | 0.511574 | 1.2:+4888515 | None:intergenic |
CTACGAAGGTGTTGTTGGTG+GGG | 0.511916 | 1.2:-4888228 | MS.gene044101:CDS |
GAATTTAGGGGTAGTAGAAG+TGG | 0.512596 | 1.2:+4888685 | None:intergenic |
GAACGTTTACGTTTAGTCCA+TGG | 0.526324 | 1.2:+4888641 | None:intergenic |
TTGCAGCTGAGGAAGTTGTT+GGG | 0.534746 | 1.2:+4888360 | None:intergenic |
GTTGTTGGTGGTGGATTCAA+AGG | 0.535966 | 1.2:+4888527 | None:intergenic |
TGTCACTACGAAGGTGTTGT+TGG | 0.546239 | 1.2:-4888233 | MS.gene044101:CDS |
TACGAAGGTGTTGTTGGTGG+GGG | 0.550558 | 1.2:-4888227 | MS.gene044101:CDS |
AATTTAGGGGTAGTAGAAGT+GGG | 0.550780 | 1.2:+4888686 | None:intergenic |
TGTAACTGTCTCTGAAGGTG+TGG | 0.551186 | 1.2:-4888189 | MS.gene044101:CDS |
ACAAGCTCAGCCAACACAAA+CGG | 0.552600 | 1.2:-4888335 | MS.gene044101:CDS |
CCAATCTTATTAGCAAACTC+CGG | 0.554584 | 1.2:+4888116 | None:intergenic |
CCACCCAAAGCTTGTCCTGT+CGG | 0.557784 | 1.2:+4888266 | None:intergenic |
AACACCGCCACCGTTTGTGT+TGG | 0.560436 | 1.2:+4888325 | None:intergenic |
TCGATGAACCTAATCTTCCA+TGG | 0.566526 | 1.2:-4888658 | MS.gene044101:CDS |
GTAACTGTCTCTGAAGGTGT+GGG | 0.567359 | 1.2:-4888188 | MS.gene044101:CDS |
TGATTTCGATCTGAATATCC+CGG | 0.576158 | 1.2:-4888144 | MS.gene044101:CDS |
CCGACAGGACAAGCTTTGGG+TGG | 0.581171 | 1.2:-4888266 | MS.gene044101:CDS |
TGAAATCATGGCGGTTGGTG+TGG | 0.583151 | 1.2:+4888552 | None:intergenic |
TAGCAAACTCCGGATAAGCC+GGG | 0.583949 | 1.2:+4888126 | None:intergenic |
AGGCTTGAAATCATGGCGGT+TGG | 0.583949 | 1.2:+4888547 | None:intergenic |
GTTTGTGTTGGCTGAGCTTG+TGG | 0.588915 | 1.2:+4888337 | None:intergenic |
TCTGCTGTAACTGTCTCTGA+AGG | 0.589059 | 1.2:-4888194 | MS.gene044101:CDS |
TGTCTCATCATGCTCGCTCG+TGG | 0.591916 | 1.2:-4888575 | MS.gene044101:CDS |
TCAGCCAACACAAACGGTGG+CGG | 0.606071 | 1.2:-4888329 | MS.gene044101:CDS |
ACCACCGCCACCGCCACCGA+CGG | 0.606095 | 1.2:+4888391 | None:intergenic |
GACTTGCTTTGTGTCCACCG+AGG | 0.621099 | 1.2:+4888426 | None:intergenic |
TCTTCTTATCAAGCCCTCGG+TGG | 0.636904 | 1.2:-4888440 | MS.gene044101:CDS |
ATCACGTTGATGACTATGTG+TGG | 0.647702 | 1.2:+4888163 | None:intergenic |
AGCTCAGCCAACACAAACGG+TGG | 0.659448 | 1.2:-4888332 | MS.gene044101:CDS |
TGGAAGATTAGGTTCATCGA+AGG | 0.659843 | 1.2:+4888661 | None:intergenic |
TTCATCGAAGGTGAATTTAG+GGG | 0.676237 | 1.2:+4888673 | None:intergenic |
CACAAACGTTGTCACTACGA+AGG | 0.683725 | 1.2:-4888242 | MS.gene044101:CDS |
TCAAAGGCTTGAAATCATGG+CGG | 0.753429 | 1.2:+4888543 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | AAAATTCGGAATTTCAATCT+TGG | + | chr1.2:4888707-4888726 | None:intergenic | 25.0% |
! | AAATTCGGAATTTCAATCTT+GGG | + | chr1.2:4888706-4888725 | None:intergenic | 25.0% |
AGAACATTTGTAACTGAGTT+TGG | + | chr1.2:4888254-4888273 | None:intergenic | 30.0% | |
AATTTAGGGGTAGTAGAAGT+GGG | + | chr1.2:4888049-4888068 | None:intergenic | 35.0% | |
CCAATCTTATTAGCAAACTC+CGG | + | chr1.2:4888619-4888638 | None:intergenic | 35.0% | |
GATTCAAAGGCTTGAAATCA+TGG | + | chr1.2:4888195-4888214 | None:intergenic | 35.0% | |
GTTCATCGAAGGTGAATTTA+GGG | + | chr1.2:4888063-4888082 | None:intergenic | 35.0% | |
TGATTTCGATCTGAATATCC+CGG | - | chr1.2:4888588-4888607 | MS.gene044101:CDS | 35.0% | |
TTCATCGAAGGTGAATTTAG+GGG | + | chr1.2:4888062-4888081 | None:intergenic | 35.0% | |
! | ATGAGTGTTCGATTTGTCAT+AGG | - | chr1.2:4888437-4888456 | MS.gene044101:CDS | 35.0% |
! | GTTGTTGTTGTTGTTGTCAA+TGG | + | chr1.2:4888230-4888249 | None:intergenic | 35.0% |
! | TTGTTGTTGTCAATGGTTGT+TGG | + | chr1.2:4888223-4888242 | None:intergenic | 35.0% |
! | TTTTCTTCTTATCAAGCCCT+CGG | - | chr1.2:4888289-4888308 | MS.gene044101:CDS | 35.0% |
CGTTTAGTCCATGGAAGATT+AGG | + | chr1.2:4888085-4888104 | None:intergenic | 40.0% | |
GAACGTTTACGTTTAGTCCA+TGG | + | chr1.2:4888094-4888113 | None:intergenic | 40.0% | |
GAATTTAGGGGTAGTAGAAG+TGG | + | chr1.2:4888050-4888069 | None:intergenic | 40.0% | |
GCTTTCTTCTTCATCATCAC+AGG | + | chr1.2:4888667-4888686 | None:intergenic | 40.0% | |
GGTTCATCGAAGGTGAATTT+AGG | + | chr1.2:4888064-4888083 | None:intergenic | 40.0% | |
TCAAAGGCTTGAAATCATGG+CGG | + | chr1.2:4888192-4888211 | None:intergenic | 40.0% | |
TCGATGAACCTAATCTTCCA+TGG | - | chr1.2:4888074-4888093 | MS.gene044101:CDS | 40.0% | |
TGGAAGATTAGGTTCATCGA+AGG | + | chr1.2:4888074-4888093 | None:intergenic | 40.0% | |
TTCTTCATCATCACAGGATG+AGG | + | chr1.2:4888661-4888680 | None:intergenic | 40.0% | |
TTGTTGTCAATGGTTGTTGG+TGG | + | chr1.2:4888220-4888239 | None:intergenic | 40.0% | |
!! | ATCACGTTGATGACTATGTG+TGG | + | chr1.2:4888572-4888591 | None:intergenic | 40.0% |
!! | CCGGAGTTTGCTAATAAGAT+TGG | - | chr1.2:4888616-4888635 | MS.gene044101:CDS | 40.0% |
ACAAGCTCAGCCAACACAAA+CGG | - | chr1.2:4888397-4888416 | MS.gene044101:CDS | 45.0% | |
CACAAACGTTGTCACTACGA+AGG | - | chr1.2:4888490-4888509 | MS.gene044101:CDS | 45.0% | |
TCTGAATATCCCGGCTTATC+CGG | - | chr1.2:4888597-4888616 | MS.gene044101:CDS | 45.0% | |
TCTGCTGTAACTGTCTCTGA+AGG | - | chr1.2:4888538-4888557 | MS.gene044101:CDS | 45.0% | |
TTAGCAAACTCCGGATAAGC+CGG | + | chr1.2:4888610-4888629 | None:intergenic | 45.0% | |
TTGCAGCTGAGGAAGTTGTT+GGG | + | chr1.2:4888375-4888394 | None:intergenic | 45.0% | |
TTTCCGACAGGACAAGCTTT+GGG | - | chr1.2:4888463-4888482 | MS.gene044101:CDS | 45.0% | |
! | GAAGAAAGCTCGTGTTTTCG+TGG | - | chr1.2:4888678-4888697 | MS.gene044101:CDS | 45.0% |
! | GTAACTGTCTCTGAAGGTGT+GGG | - | chr1.2:4888544-4888563 | MS.gene044101:CDS | 45.0% |
! | TGTAACTGTCTCTGAAGGTG+TGG | - | chr1.2:4888543-4888562 | MS.gene044101:CDS | 45.0% |
! | TTGTCAATGGTTGTTGGTGG+TGG | + | chr1.2:4888217-4888236 | None:intergenic | 45.0% |
!! | ACTACGAAGGTGTTGTTGGT+GGG | - | chr1.2:4888503-4888522 | MS.gene044101:CDS | 45.0% |
!! | GTTGTTGGTGGTGGATTCAA+AGG | + | chr1.2:4888208-4888227 | None:intergenic | 45.0% |
!! | TGTCACTACGAAGGTGTTGT+TGG | - | chr1.2:4888499-4888518 | MS.gene044101:CDS | 45.0% |
ACTTGCTTTGTGTCCACCGA+GGG | + | chr1.2:4888308-4888327 | None:intergenic | 50.0% | |
AGGCTTGAAATCATGGCGGT+TGG | + | chr1.2:4888188-4888207 | None:intergenic | 50.0% | |
AGTCACCGCAAAAACTCCGT+CGG | - | chr1.2:4888325-4888344 | MS.gene044101:CDS | 50.0% | |
GTTGCAGCTGAGGAAGTTGT+TGG | + | chr1.2:4888376-4888395 | None:intergenic | 50.0% | |
GTTTCCGACAGGACAAGCTT+TGG | - | chr1.2:4888462-4888481 | MS.gene044101:CDS | 50.0% | |
TAGCAAACTCCGGATAAGCC+GGG | + | chr1.2:4888609-4888628 | None:intergenic | 50.0% | |
TCTTCTTATCAAGCCCTCGG+TGG | - | chr1.2:4888292-4888311 | MS.gene044101:CDS | 50.0% | |
TGTCATAGGTCGTTTCCGAC+AGG | - | chr1.2:4888451-4888470 | MS.gene044101:CDS | 50.0% | |
! | TGAAATCATGGCGGTTGGTG+TGG | + | chr1.2:4888183-4888202 | None:intergenic | 50.0% |
!! | CACTACGAAGGTGTTGTTGG+TGG | - | chr1.2:4888502-4888521 | MS.gene044101:CDS | 50.0% |
!! | CTACGAAGGTGTTGTTGGTG+GGG | - | chr1.2:4888504-4888523 | MS.gene044101:CDS | 50.0% |
!! | GTTTGTGTTGGCTGAGCTTG+TGG | + | chr1.2:4888398-4888417 | None:intergenic | 50.0% |
!! | TACGAAGGTGTTGTTGGTGG+GGG | - | chr1.2:4888505-4888524 | MS.gene044101:CDS | 50.0% |
AACACCGCCACCGTTTGTGT+TGG | + | chr1.2:4888410-4888429 | None:intergenic | 55.0% | |
AGCTCAGCCAACACAAACGG+TGG | - | chr1.2:4888400-4888419 | MS.gene044101:CDS | 55.0% | |
CCACCCAAAGCTTGTCCTGT+CGG | + | chr1.2:4888469-4888488 | None:intergenic | 55.0% | |
TCAGCCAACACAAACGGTGG+CGG | - | chr1.2:4888403-4888422 | MS.gene044101:CDS | 55.0% | |
TGAGCTTGTGGTTGCAGCTG+AGG | + | chr1.2:4888386-4888405 | None:intergenic | 55.0% | |
TGTCTCATCATGCTCGCTCG+TGG | - | chr1.2:4888157-4888176 | MS.gene044101:CDS | 55.0% | |
! | GACTTGCTTTGTGTCCACCG+AGG | + | chr1.2:4888309-4888328 | None:intergenic | 55.0% |
CACCGCAAAAACTCCGTCGG+TGG | - | chr1.2:4888328-4888347 | MS.gene044101:CDS | 60.0% | |
CGCAAAAACTCCGTCGGTGG+CGG | - | chr1.2:4888331-4888350 | MS.gene044101:CDS | 60.0% | |
! | AAAAACTCCGTCGGTGGCGG+TGG | - | chr1.2:4888334-4888353 | MS.gene044101:CDS | 60.0% |
! | CGCCACCGACGGAGTTTTTG+CGG | + | chr1.2:4888333-4888352 | None:intergenic | 60.0% |
!! | CCGACAGGACAAGCTTTGGG+TGG | - | chr1.2:4888466-4888485 | MS.gene044101:CDS | 60.0% |
! | AACTCCGTCGGTGGCGGTGG+CGG | - | chr1.2:4888337-4888356 | MS.gene044101:CDS | 70.0% |
ACCACCGCCACCGCCACCGA+CGG | + | chr1.2:4888344-4888363 | None:intergenic | 75.0% | |
!! | TCCGTCGGTGGCGGTGGCGG+TGG | - | chr1.2:4888340-4888359 | MS.gene044101:CDS | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 4888022 | 4888732 | 4888022 | ID=MS.gene044101 |
chr1.2 | mRNA | 4888022 | 4888732 | 4888022 | ID=MS.gene044101.t1;Parent=MS.gene044101 |
chr1.2 | exon | 4888022 | 4888732 | 4888022 | ID=MS.gene044101.t1.exon1;Parent=MS.gene044101.t1 |
chr1.2 | CDS | 4888022 | 4888732 | 4888022 | ID=cds.MS.gene044101.t1;Parent=MS.gene044101.t1 |
Gene Sequence |
Protein sequence |