Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32887.t1 | CAB77055.1 | 96.2 | 235 | 9 | 0 | 1 | 235 | 1 | 235 | 4.30E-91 | 344.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32887.t1 | O22533 | 49.4 | 239 | 94 | 7 | 1 | 222 | 1 | 229 | 1.1e-34 | 148.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32887.t1 | Q9LWA5 | 96.2 | 235 | 9 | 0 | 1 | 235 | 1 | 235 | 3.1e-91 | 344.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene32887.t1 | TF | C2H2 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene001465 | MS.gene32887 | PPI |
| MS.gene00489 | MS.gene32887 | PPI |
| MS.gene044101 | MS.gene32887 | PPI |
| MS.gene32887 | MS.gene001466 | PPI |
| MS.gene66447 | MS.gene32887 | PPI |
| MS.gene015091 | MS.gene32887 | PPI |
| MS.gene38597 | MS.gene32887 | PPI |
| MS.gene32887 | MS.gene24464 | PPI |
| MS.gene38598 | MS.gene32887 | PPI |
| MS.gene012885 | MS.gene32887 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32887.t1 | MTR_3g102980 | 96.639 | 238 | 3 | 3 | 1 | 235 | 1 | 236 | 2.23e-167 | 461 |
| MS.gene32887.t1 | MTR_1g018420 | 54.918 | 244 | 85 | 7 | 1 | 233 | 1 | 230 | 2.49e-77 | 233 |
| MS.gene32887.t1 | MTR_1g106730 | 48.077 | 260 | 88 | 13 | 1 | 230 | 3 | 245 | 7.80e-57 | 181 |
| MS.gene32887.t1 | MTR_4g028610 | 30.693 | 202 | 72 | 6 | 30 | 163 | 134 | 335 | 2.65e-19 | 86.3 |
| MS.gene32887.t1 | MTR_0160s0030 | 40.152 | 132 | 53 | 4 | 84 | 215 | 240 | 345 | 6.75e-19 | 84.7 |
| MS.gene32887.t1 | MTR_4g027440 | 44.565 | 92 | 49 | 2 | 76 | 165 | 212 | 303 | 1.54e-18 | 83.6 |
| MS.gene32887.t1 | MTR_5g099040 | 35.915 | 142 | 66 | 3 | 48 | 164 | 94 | 235 | 1.35e-16 | 77.0 |
| MS.gene32887.t1 | MTR_1g067650 | 34.615 | 130 | 70 | 2 | 85 | 209 | 40 | 159 | 1.47e-16 | 75.1 |
| MS.gene32887.t1 | MTR_1g067640 | 34.615 | 130 | 70 | 2 | 85 | 209 | 39 | 158 | 1.50e-16 | 74.7 |
| MS.gene32887.t1 | MTR_7g023560 | 35.156 | 128 | 69 | 2 | 52 | 179 | 12 | 125 | 1.65e-16 | 75.1 |
| MS.gene32887.t1 | MTR_5g062300 | 39.855 | 138 | 72 | 3 | 38 | 164 | 71 | 208 | 2.30e-16 | 75.9 |
| MS.gene32887.t1 | MTR_1g062780 | 31.343 | 201 | 83 | 7 | 52 | 207 | 81 | 271 | 5.08e-16 | 75.9 |
| MS.gene32887.t1 | MTR_1g090703 | 30.415 | 217 | 96 | 8 | 40 | 203 | 89 | 303 | 1.08e-15 | 75.5 |
| MS.gene32887.t1 | MTR_7g100100 | 46.835 | 79 | 35 | 2 | 84 | 162 | 34 | 105 | 2.98e-15 | 71.2 |
| MS.gene32887.t1 | MTR_1g115345 | 46.154 | 78 | 37 | 1 | 85 | 162 | 46 | 118 | 1.26e-14 | 70.5 |
| MS.gene32887.t1 | MTR_4g109340 | 33.175 | 211 | 78 | 9 | 43 | 200 | 286 | 486 | 1.63e-14 | 72.4 |
| MS.gene32887.t1 | MTR_1g067660 | 32.941 | 170 | 86 | 5 | 47 | 209 | 6 | 154 | 6.32e-14 | 67.8 |
| MS.gene32887.t1 | MTR_2g096540 | 35.714 | 126 | 49 | 3 | 37 | 162 | 2 | 95 | 6.80e-14 | 67.0 |
| MS.gene32887.t1 | MTR_4g100860 | 30.918 | 207 | 93 | 8 | 15 | 200 | 124 | 301 | 6.92e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32887.t1 | AT1G27730 | 52.321 | 237 | 95 | 7 | 1 | 231 | 1 | 225 | 1.39e-63 | 198 |
| MS.gene32887.t1 | AT5G04340 | 51.695 | 236 | 93 | 9 | 1 | 222 | 1 | 229 | 4.07e-55 | 176 |
| MS.gene32887.t1 | AT3G19580 | 45.802 | 262 | 102 | 10 | 1 | 227 | 1 | 257 | 6.06e-50 | 164 |
| MS.gene32887.t1 | AT3G19580 | 45.802 | 262 | 102 | 10 | 1 | 227 | 1 | 257 | 6.06e-50 | 164 |
| MS.gene32887.t1 | AT5G43170 | 47.009 | 234 | 74 | 10 | 1 | 226 | 1 | 192 | 2.68e-45 | 150 |
| MS.gene32887.t1 | AT5G67450 | 41.564 | 243 | 93 | 8 | 1 | 200 | 1 | 237 | 6.33e-40 | 138 |
| MS.gene32887.t1 | AT3G49930 | 47.429 | 175 | 71 | 4 | 30 | 200 | 36 | 193 | 4.16e-39 | 135 |
| MS.gene32887.t1 | AT3G60580 | 37.791 | 172 | 78 | 5 | 44 | 200 | 119 | 276 | 1.18e-24 | 99.4 |
| MS.gene32887.t1 | AT2G45120 | 39.645 | 169 | 79 | 5 | 44 | 200 | 143 | 300 | 1.25e-23 | 97.1 |
| MS.gene32887.t1 | AT2G28200 | 35.204 | 196 | 91 | 7 | 44 | 203 | 68 | 263 | 4.10e-22 | 92.4 |
| MS.gene32887.t1 | AT1G49900 | 51.579 | 95 | 40 | 2 | 85 | 178 | 194 | 283 | 4.28e-22 | 95.1 |
| MS.gene32887.t1 | AT1G49900 | 49.412 | 85 | 35 | 2 | 83 | 167 | 749 | 825 | 3.50e-18 | 83.6 |
| MS.gene32887.t1 | AT5G56200 | 47.423 | 97 | 38 | 2 | 84 | 167 | 342 | 438 | 5.01e-20 | 88.6 |
| MS.gene32887.t1 | AT5G03510 | 32.995 | 197 | 96 | 6 | 43 | 203 | 64 | 260 | 1.66e-19 | 85.5 |
| MS.gene32887.t1 | AT1G02040 | 31.443 | 194 | 92 | 8 | 5 | 163 | 61 | 248 | 3.78e-19 | 84.7 |
| MS.gene32887.t1 | AT2G17180 | 31.250 | 160 | 75 | 5 | 48 | 200 | 121 | 252 | 1.97e-17 | 79.3 |
| MS.gene32887.t1 | AT3G46080 | 41.026 | 117 | 45 | 3 | 49 | 162 | 12 | 107 | 6.68e-17 | 75.9 |
| MS.gene32887.t1 | AT4G35280 | 39.200 | 125 | 52 | 5 | 48 | 164 | 138 | 246 | 7.26e-17 | 78.2 |
| MS.gene32887.t1 | AT1G02030 | 34.416 | 154 | 80 | 3 | 47 | 200 | 123 | 255 | 2.97e-16 | 76.3 |
| MS.gene32887.t1 | AT2G37430 | 38.095 | 126 | 67 | 2 | 37 | 162 | 2 | 116 | 5.02e-16 | 73.6 |
| MS.gene32887.t1 | AT3G46090 | 37.692 | 130 | 61 | 3 | 39 | 167 | 3 | 113 | 1.92e-15 | 72.0 |
| MS.gene32887.t1 | AT3G53600 | 34.921 | 126 | 70 | 2 | 37 | 162 | 2 | 115 | 6.15e-15 | 70.9 |
| MS.gene32887.t1 | AT5G59820 | 36.975 | 119 | 53 | 3 | 55 | 173 | 18 | 114 | 1.29e-14 | 69.7 |
| MS.gene32887.t1 | AT5G04390 | 31.278 | 227 | 82 | 9 | 48 | 203 | 96 | 319 | 2.06e-14 | 72.0 |
| MS.gene32887.t1 | AT3G46070 | 36.364 | 110 | 53 | 3 | 53 | 162 | 16 | 108 | 1.89e-13 | 66.6 |
| MS.gene32887.t1 | AT2G28710 | 36.937 | 111 | 46 | 3 | 52 | 162 | 14 | 100 | 1.34e-12 | 63.9 |
| MS.gene32887.t1 | AT3G10470 | 38.235 | 102 | 40 | 4 | 84 | 162 | 182 | 283 | 3.50e-12 | 65.5 |
| MS.gene32887.t1 | AT5G61470 | 37.179 | 78 | 39 | 2 | 86 | 163 | 230 | 297 | 5.62e-11 | 61.6 |
Find 67 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCCTACTGGACAGGCTTT+GGG | 0.284852 | 3.1:-81469622 | MS.gene32887:CDS |
| TTGCGGACATAACAGCTTTC+CGG | 0.302034 | 3.1:+81469749 | None:intergenic |
| CTTCCCTACTGGACAGGCTT+TGG | 0.307779 | 3.1:-81469623 | MS.gene32887:CDS |
| GTTTCAAGATAACTCAGATT+TGG | 0.369889 | 3.1:+81470006 | None:intergenic |
| TACTCCTTTCACACCCTTTG+AGG | 0.385893 | 3.1:-81470031 | MS.gene32887:CDS |
| GGCAGCGTTGGTGCCGGTGC+CGG | 0.399502 | 3.1:-81469574 | MS.gene32887:CDS |
| CTCAGATTTGGTTCCTCAAA+GGG | 0.424837 | 3.1:+81470018 | None:intergenic |
| GTTGGTGCCGGTGCCGGTGC+TGG | 0.425482 | 3.1:-81469568 | MS.gene32887:CDS |
| CATAACAGCTTTCCGGTGAC+TGG | 0.439265 | 3.1:+81469756 | None:intergenic |
| GGCTTCTTTGCAGCAGGTAA+AGG | 0.446061 | 3.1:+81469418 | None:intergenic |
| AATTTCCAGCTTGAAAAGAC+AGG | 0.452679 | 3.1:+81469396 | None:intergenic |
| TTTGAAAAGTCCGGAAAAGC+CGG | 0.466243 | 3.1:+81469472 | None:intergenic |
| ACTGGCTTTGTGTCCACCTA+GGG | 0.475209 | 3.1:+81469774 | None:intergenic |
| CTGATCTTCAGCGGTGGTTG+CGG | 0.476506 | 3.1:+81469732 | None:intergenic |
| GATCGTTTACCTTTCGTCCA+CGG | 0.485045 | 3.1:+81469982 | None:intergenic |
| CTTACCGTTGGAAGCAGAGC+TGG | 0.488264 | 3.1:+81469681 | None:intergenic |
| GCATTTGTGACTGAGTTTAA+CGG | 0.491121 | 3.1:+81469831 | None:intergenic |
| ATGAGTCTTGTTCTTACCGT+TGG | 0.503655 | 3.1:+81469669 | None:intergenic |
| TGTCACAAATCCTTCCCTAC+TGG | 0.506283 | 3.1:-81469634 | MS.gene32887:CDS |
| AGACAGGGCTTCTTTGCAGC+AGG | 0.516606 | 3.1:+81469412 | None:intergenic |
| GGTTCCTCAAAGGGTGTGAA+AGG | 0.517530 | 3.1:+81470027 | None:intergenic |
| ACGATCAAAGCGTTCTCGCA+TGG | 0.518878 | 3.1:-81469965 | MS.gene32887:CDS |
| TACGAAGGCAGCGTTGGTGC+CGG | 0.519961 | 3.1:-81469580 | MS.gene32887:CDS |
| TTGAAAAGTCCGGAAAAGCC+GGG | 0.523321 | 3.1:+81469473 | None:intergenic |
| GACTGGCTTTGTGTCCACCT+AGG | 0.526559 | 3.1:+81469773 | None:intergenic |
| CAAATCCTTCCCTACTGGAC+AGG | 0.527321 | 3.1:-81469629 | MS.gene32887:CDS |
| CAACGGCAACAAGACTGAAT+CGG | 0.528554 | 3.1:-81469872 | MS.gene32887:CDS |
| TTAACGGTGGTTAGCGGCGT+CGG | 0.530337 | 3.1:+81469847 | None:intergenic |
| CTGAGTTTAACGGTGGTTAG+CGG | 0.533899 | 3.1:+81469841 | None:intergenic |
| CCTCCCAAAGCCTGTCCAGT+AGG | 0.538116 | 3.1:+81469619 | None:intergenic |
| ACTCAGATTTGGTTCCTCAA+AGG | 0.539745 | 3.1:+81470017 | None:intergenic |
| AGGGAAGGATTTGTGACAGA+TGG | 0.550231 | 3.1:+81469639 | None:intergenic |
| TTCTCATCTTATCAAGCCCT+AGG | 0.550654 | 3.1:-81469790 | MS.gene32887:CDS |
| GTAACTGCCTCTGAAGGAGT+TGG | 0.551176 | 3.1:-81469535 | MS.gene32887:CDS |
| CTCCCAAAGCCTGTCCAGTA+GGG | 0.562622 | 3.1:+81469620 | None:intergenic |
| CTTGAAACACCGTGGACGAA+AGG | 0.563216 | 3.1:-81469991 | MS.gene32887:CDS |
| TGTGAAAGGAGTAGCAGTGG+TGG | 0.569120 | 3.1:+81470041 | None:intergenic |
| TGTCACTACGAAGGCAGCGT+TGG | 0.571767 | 3.1:-81469586 | MS.gene32887:CDS |
| GGTAGTCACGGCGGATGAAG+TGG | 0.575582 | 3.1:+81469702 | None:intergenic |
| CACGGCGGATGAAGTGGTGG+TGG | 0.576380 | 3.1:+81469708 | None:intergenic |
| GCTACTTCCAGCACCGGCAC+CGG | 0.578492 | 3.1:+81469561 | None:intergenic |
| TAAGATCAAAATCACGGTGG+TGG | 0.583762 | 3.1:+81469500 | None:intergenic |
| CAAAGCCTGTCCAGTAGGGA+AGG | 0.583815 | 3.1:+81469624 | None:intergenic |
| GGAAGCAGAGCTGGTAGTCA+CGG | 0.585255 | 3.1:+81469690 | None:intergenic |
| CTCATCATGCTTGCTCGCAG+CGG | 0.585296 | 3.1:-81469901 | MS.gene32887:CDS |
| GTGGACACAAAGCCAGTCAC+CGG | 0.585980 | 3.1:-81469768 | MS.gene32887:CDS |
| ATTTCCAGCTTGAAAAGACA+GGG | 0.591447 | 3.1:+81469397 | None:intergenic |
| TACAGCGCTACTTCCAGCAC+CGG | 0.591699 | 3.1:+81469555 | None:intergenic |
| ATTATTGATCAGTAATGAGA+AGG | 0.592327 | 3.1:+81469373 | None:intergenic |
| GTGAAAGGAGTAGCAGTGGT+GGG | 0.592634 | 3.1:+81470042 | None:intergenic |
| AGCGCTGTAACTGCCTCTGA+AGG | 0.607763 | 3.1:-81469541 | MS.gene32887:CDS |
| CCTACTGGACAGGCTTTGGG+AGG | 0.612476 | 3.1:-81469619 | MS.gene32887:CDS |
| AGTCACGGCGGATGAAGTGG+TGG | 0.625215 | 3.1:+81469705 | None:intergenic |
| TCATCTTATCAAGCCCTAGG+TGG | 0.625860 | 3.1:-81469787 | MS.gene32887:CDS |
| TGACGATCCAACTCCTTCAG+AGG | 0.633382 | 3.1:+81469528 | None:intergenic |
| GGGTGTGAAAGGAGTAGCAG+TGG | 0.640901 | 3.1:+81470038 | None:intergenic |
| ACTACCAGCTCTGCTTCCAA+CGG | 0.645257 | 3.1:-81469685 | MS.gene32887:CDS |
| GGAGGTTAAGATCAAAATCA+CGG | 0.658091 | 3.1:+81469494 | None:intergenic |
| CACAAGCGTTGTCACTACGA+AGG | 0.677003 | 3.1:-81469595 | MS.gene32887:CDS |
| GCTCGCAGCGGTAACAACAA+CGG | 0.677297 | 3.1:-81469889 | MS.gene32887:CDS |
| TTTGTGACTGAGTTTAACGG+TGG | 0.692042 | 3.1:+81469834 | None:intergenic |
| AGCAGAGCTGGTAGTCACGG+CGG | 0.700777 | 3.1:+81469693 | None:intergenic |
| GGTGGTCTGATCTTCAGCGG+TGG | 0.700953 | 3.1:+81469726 | None:intergenic |
| GGTGGTGGTCTGATCTTCAG+CGG | 0.704088 | 3.1:+81469723 | None:intergenic |
| AAAAGTCCGGAAAAGCCGGG+AGG | 0.720865 | 3.1:+81469476 | None:intergenic |
| TGAGTTATCTTGAAACACCG+TGG | 0.739154 | 3.1:-81469999 | MS.gene32887:CDS |
| GGTTAAGATCAAAATCACGG+TGG | 0.807668 | 3.1:+81469497 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAACTTCTTTGAAAAGTC+CGG | + | chr3.1:81469987-81470006 | None:intergenic | 25.0% |
| GTTTCAAGATAACTCAGATT+TGG | + | chr3.1:81469444-81469463 | None:intergenic | 30.0% | |
| ! | CTTTTCAAAGAAGTTTTTCG+TGG | - | chr3.1:81469989-81470008 | MS.gene32887:CDS | 30.0% |
| AATTTCCAGCTTGAAAAGAC+AGG | + | chr3.1:81470054-81470073 | None:intergenic | 35.0% | |
| ATTTCCAGCTTGAAAAGACA+GGG | + | chr3.1:81470053-81470072 | None:intergenic | 35.0% | |
| GCATTTGTGACTGAGTTTAA+CGG | + | chr3.1:81469619-81469638 | None:intergenic | 35.0% | |
| GGAGGTTAAGATCAAAATCA+CGG | + | chr3.1:81469956-81469975 | None:intergenic | 35.0% | |
| !! | TGATTTTGATCTTAACCTCC+CGG | - | chr3.1:81469956-81469975 | MS.gene32887:CDS | 35.0% |
| GGTTAAGATCAAAATCACGG+TGG | + | chr3.1:81469953-81469972 | None:intergenic | 40.0% | |
| TAAGATCAAAATCACGGTGG+TGG | + | chr3.1:81469950-81469969 | None:intergenic | 40.0% | |
| TGAGTTATCTTGAAACACCG+TGG | - | chr3.1:81469448-81469467 | MS.gene32887:CDS | 40.0% | |
| TTCTCATCTTATCAAGCCCT+AGG | - | chr3.1:81469657-81469676 | MS.gene32887:CDS | 40.0% | |
| TTTGAAAAGTCCGGAAAAGC+CGG | + | chr3.1:81469978-81469997 | None:intergenic | 40.0% | |
| TTTGTGACTGAGTTTAACGG+TGG | + | chr3.1:81469616-81469635 | None:intergenic | 40.0% | |
| ! | ACTCAGATTTGGTTCCTCAA+AGG | + | chr3.1:81469433-81469452 | None:intergenic | 40.0% |
| ! | CTCAGATTTGGTTCCTCAAA+GGG | + | chr3.1:81469432-81469451 | None:intergenic | 40.0% |
| !! | ATGAGTCTTGTTCTTACCGT+TGG | + | chr3.1:81469781-81469800 | None:intergenic | 40.0% |
| AGGGAAGGATTTGTGACAGA+TGG | + | chr3.1:81469811-81469830 | None:intergenic | 45.0% | |
| CAACGGCAACAAGACTGAAT+CGG | - | chr3.1:81469575-81469594 | MS.gene32887:CDS | 45.0% | |
| CTGAGTTTAACGGTGGTTAG+CGG | + | chr3.1:81469609-81469628 | None:intergenic | 45.0% | |
| GATCGTTTACCTTTCGTCCA+CGG | + | chr3.1:81469468-81469487 | None:intergenic | 45.0% | |
| TACTCCTTTCACACCCTTTG+AGG | - | chr3.1:81469416-81469435 | MS.gene32887:CDS | 45.0% | |
| TCATCTTATCAAGCCCTAGG+TGG | - | chr3.1:81469660-81469679 | MS.gene32887:CDS | 45.0% | |
| TGTCACAAATCCTTCCCTAC+TGG | - | chr3.1:81469813-81469832 | MS.gene32887:CDS | 45.0% | |
| TTGAAAAGTCCGGAAAAGCC+GGG | + | chr3.1:81469977-81469996 | None:intergenic | 45.0% | |
| TTGCGGACATAACAGCTTTC+CGG | + | chr3.1:81469701-81469720 | None:intergenic | 45.0% | |
| ! | GAAGTTTTTCGTGGATGACG+AGG | - | chr3.1:81469998-81470017 | MS.gene32887:CDS | 45.0% |
| ACTACCAGCTCTGCTTCCAA+CGG | - | chr3.1:81469762-81469781 | MS.gene32887:CDS | 50.0% | |
| CAAATCCTTCCCTACTGGAC+AGG | - | chr3.1:81469818-81469837 | MS.gene32887:CDS | 50.0% | |
| CATAACAGCTTTCCGGTGAC+TGG | + | chr3.1:81469694-81469713 | None:intergenic | 50.0% | |
| CTTGAAACACCGTGGACGAA+AGG | - | chr3.1:81469456-81469475 | MS.gene32887:CDS | 50.0% | |
| GGCTTCTTTGCAGCAGGTAA+AGG | + | chr3.1:81470032-81470051 | None:intergenic | 50.0% | |
| GTGAAAGGAGTAGCAGTGGT+GGG | + | chr3.1:81469408-81469427 | None:intergenic | 50.0% | |
| TGACGATCCAACTCCTTCAG+AGG | + | chr3.1:81469922-81469941 | None:intergenic | 50.0% | |
| TGTGAAAGGAGTAGCAGTGG+TGG | + | chr3.1:81469409-81469428 | None:intergenic | 50.0% | |
| TTCCCTACTGGACAGGCTTT+GGG | - | chr3.1:81469825-81469844 | MS.gene32887:CDS | 50.0% | |
| ! | ACGATCAAAGCGTTCTCGCA+TGG | - | chr3.1:81469482-81469501 | MS.gene32887:CDS | 50.0% |
| ! | CACAAGCGTTGTCACTACGA+AGG | - | chr3.1:81469852-81469871 | MS.gene32887:CDS | 50.0% |
| ! | GGTTCCTCAAAGGGTGTGAA+AGG | + | chr3.1:81469423-81469442 | None:intergenic | 50.0% |
| ! | GTAACTGCCTCTGAAGGAGT+TGG | - | chr3.1:81469912-81469931 | MS.gene32887:CDS | 50.0% |
| ! | TCTTAACCTCCCGGCTTTTC+CGG | - | chr3.1:81469965-81469984 | MS.gene32887:CDS | 50.0% |
| !! | ACTGGCTTTGTGTCCACCTA+GGG | + | chr3.1:81469676-81469695 | None:intergenic | 50.0% |
| !! | GAAGCCCTGTCTTTTCAAGC+TGG | - | chr3.1:81470046-81470065 | MS.gene32887:CDS | 50.0% |
| AAAAGTCCGGAAAAGCCGGG+AGG | + | chr3.1:81469974-81469993 | None:intergenic | 55.0% | |
| AGACAGGGCTTCTTTGCAGC+AGG | + | chr3.1:81470038-81470057 | None:intergenic | 55.0% | |
| AGCGCTGTAACTGCCTCTGA+AGG | - | chr3.1:81469906-81469925 | MS.gene32887:CDS | 55.0% | |
| CAAAGCCTGTCCAGTAGGGA+AGG | + | chr3.1:81469826-81469845 | None:intergenic | 55.0% | |
| CTCATCATGCTTGCTCGCAG+CGG | - | chr3.1:81469546-81469565 | MS.gene32887:CDS | 55.0% | |
| CTCCCAAAGCCTGTCCAGTA+GGG | + | chr3.1:81469830-81469849 | None:intergenic | 55.0% | |
| CTGATCTTCAGCGGTGGTTG+CGG | + | chr3.1:81469718-81469737 | None:intergenic | 55.0% | |
| CTTACCGTTGGAAGCAGAGC+TGG | + | chr3.1:81469769-81469788 | None:intergenic | 55.0% | |
| CTTCCCTACTGGACAGGCTT+TGG | - | chr3.1:81469824-81469843 | MS.gene32887:CDS | 55.0% | |
| GCTCGCAGCGGTAACAACAA+CGG | - | chr3.1:81469558-81469577 | MS.gene32887:CDS | 55.0% | |
| GGAAGCAGAGCTGGTAGTCA+CGG | + | chr3.1:81469760-81469779 | None:intergenic | 55.0% | |
| GGGTGTGAAAGGAGTAGCAG+TGG | + | chr3.1:81469412-81469431 | None:intergenic | 55.0% | |
| GTGGACACAAAGCCAGTCAC+CGG | - | chr3.1:81469679-81469698 | MS.gene32887:CDS | 55.0% | |
| TACAGCGCTACTTCCAGCAC+CGG | + | chr3.1:81469895-81469914 | None:intergenic | 55.0% | |
| TGTCACTACGAAGGCAGCGT+TGG | - | chr3.1:81469861-81469880 | MS.gene32887:CDS | 55.0% | |
| TTAACGGTGGTTAGCGGCGT+CGG | + | chr3.1:81469603-81469622 | None:intergenic | 55.0% | |
| ! | GGTGGTGGTCTGATCTTCAG+CGG | + | chr3.1:81469727-81469746 | None:intergenic | 55.0% |
| !! | GACTGGCTTTGTGTCCACCT+AGG | + | chr3.1:81469677-81469696 | None:intergenic | 55.0% |
| AGCAGAGCTGGTAGTCACGG+CGG | + | chr3.1:81469757-81469776 | None:intergenic | 60.0% | |
| AGTCACGGCGGATGAAGTGG+TGG | + | chr3.1:81469745-81469764 | None:intergenic | 60.0% | |
| CCTCCCAAAGCCTGTCCAGT+AGG | + | chr3.1:81469831-81469850 | None:intergenic | 60.0% | |
| GGTAGTCACGGCGGATGAAG+TGG | + | chr3.1:81469748-81469767 | None:intergenic | 60.0% | |
| GGTGGTCTGATCTTCAGCGG+TGG | + | chr3.1:81469724-81469743 | None:intergenic | 60.0% | |
| !! | CCTACTGGACAGGCTTTGGG+AGG | - | chr3.1:81469828-81469847 | MS.gene32887:CDS | 60.0% |
| !! | TACGAAGGCAGCGTTGGTGC+CGG | - | chr3.1:81469867-81469886 | MS.gene32887:CDS | 60.0% |
| CACGGCGGATGAAGTGGTGG+TGG | + | chr3.1:81469742-81469761 | None:intergenic | 65.0% | |
| !! | GCTACTTCCAGCACCGGCAC+CGG | + | chr3.1:81469889-81469908 | None:intergenic | 65.0% |
| !! | GGCAGCGTTGGTGCCGGTGC+CGG | - | chr3.1:81469873-81469892 | MS.gene32887:CDS | 75.0% |
| !! | GTTGGTGCCGGTGCCGGTGC+TGG | - | chr3.1:81469879-81469898 | MS.gene32887:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 81469381 | 81470088 | 81469381 | ID=MS.gene32887 |
| chr3.1 | mRNA | 81469381 | 81470088 | 81469381 | ID=MS.gene32887.t1;Parent=MS.gene32887 |
| chr3.1 | exon | 81469381 | 81470088 | 81469381 | ID=MS.gene32887.t1.exon1;Parent=MS.gene32887.t1 |
| chr3.1 | CDS | 81469381 | 81470088 | 81469381 | ID=cds.MS.gene32887.t1;Parent=MS.gene32887.t1 |
| Gene Sequence |
| Protein sequence |
