AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene001541


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001541.t1 MTR_7g118230 76.705 176 7 2 60 235 33 174 2.91e-78 242
MS.gene001541.t1 MTR_1g045510 36.810 163 92 2 70 232 113 264 8.61e-24 98.6
MS.gene001541.t1 MTR_1g056520 34.783 184 95 4 55 231 101 266 4.10e-23 97.4
MS.gene001541.t1 MTR_7g106440 31.250 176 118 2 57 230 96 270 4.46e-21 92.0
MS.gene001541.t1 MTR_3g027140 31.677 161 107 2 71 231 61 218 3.12e-20 87.8
MS.gene001541.t1 MTR_1g097440 34.637 179 101 6 62 239 113 276 8.44e-17 81.3
MS.gene001541.t1 MTR_1g064230 29.796 245 138 7 9 230 21 254 1.97e-15 75.5
MS.gene001541.t1 MTR_3g075500 30.061 163 105 3 71 231 110 265 4.41e-15 74.3
MS.gene001541.t1 MTR_3g075500 30.061 163 105 3 71 231 110 265 6.53e-15 73.9
MS.gene001541.t1 MTR_3g075500 38.889 90 51 2 55 143 193 279 2.47e-12 66.6
MS.gene001541.t1 MTR_4g104470 29.193 161 106 3 71 231 123 275 8.27e-15 73.9
MS.gene001541.t1 MTR_4g104470 42.697 89 49 1 60 148 208 294 4.51e-14 71.6
MS.gene001541.t1 MTR_6g040190 31.788 151 87 5 72 222 115 249 9.03e-12 66.2
MS.gene001541.t1 MTR_6g040070 30.178 169 104 4 72 239 17 172 1.75e-11 65.5
MS.gene001541.t1 MTR_7g118120 24.277 173 106 3 52 220 83 234 1.81e-11 65.1
MS.gene001541.t1 MTR_4g085540 27.879 165 96 5 62 222 117 262 2.75e-11 64.7
MS.gene001541.t1 MTR_2g097960 26.543 162 107 5 72 231 17 168 3.21e-11 63.9
MS.gene001541.t1 MTR_4g122650 25.000 192 129 4 40 231 58 234 9.80e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene001541.t1 AT1G01080 54.802 177 72 3 64 235 102 275 8.57e-59 190
MS.gene001541.t1 AT1G01080 54.802 177 72 3 64 235 102 275 9.21e-59 191
MS.gene001541.t1 AT1G01080 54.494 178 72 4 64 235 102 276 4.97e-57 186
MS.gene001541.t1 AT3G52150 30.288 208 126 5 37 230 33 235 6.60e-21 90.1
MS.gene001541.t1 AT3G52150 30.288 208 126 5 37 230 33 235 6.60e-21 90.1
MS.gene001541.t1 AT1G60000 32.919 161 98 2 70 230 85 235 7.41e-20 87.4
MS.gene001541.t1 AT3G52380 31.138 167 112 3 67 231 113 278 9.20e-20 88.6
MS.gene001541.t1 AT5G50250 31.214 173 105 4 59 231 108 266 2.78e-17 80.9
MS.gene001541.t1 AT5G50250 39.560 91 53 1 58 148 197 285 3.20e-13 69.3
MS.gene001541.t1 AT2G37220 27.807 187 102 3 61 225 82 257 1.25e-15 76.3
MS.gene001541.t1 AT4G24770 32.919 161 100 3 71 231 151 303 1.47e-14 73.6
MS.gene001541.t1 AT4G24770 42.308 78 45 0 71 148 245 322 5.00e-13 68.9
MS.gene001541.t1 AT4G24770 32.919 161 100 3 71 231 151 303 1.47e-14 73.6
MS.gene001541.t1 AT4G24770 42.308 78 45 0 71 148 245 322 5.00e-13 68.9
MS.gene001541.t1 AT1G22760 28.877 187 120 4 34 220 103 276 3.69e-13 70.5
MS.gene001541.t1 AT1G71770 30.380 158 100 3 65 222 141 288 2.00e-12 68.2
MS.gene001541.t1 AT1G71770 30.380 158 100 3 65 222 141 288 2.00e-12 68.2
MS.gene001541.t1 AT2G35410 30.769 208 134 6 27 231 54 254 4.14e-12 66.2
MS.gene001541.t1 AT3G16380 30.065 153 94 3 72 224 23 162 5.56e-11 63.5
MS.gene001541.t1 AT2G23350 27.922 154 89 4 72 220 136 272 6.09e-11 63.5

Find 74 sgRNAs with CRISPR-Local

Find 223 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACATCTCTTTGGTAAATT+TGG 0.099306 7.3:-407125 MS.gene001541:CDS
CTCCCCTCTTGTTGATGAAA+TGG 0.277128 7.3:-404396 MS.gene001541:CDS
AATTATAGGTGTTACTTTGC+AGG 0.294587 7.3:+404548 None:intergenic
AAGAGATGTCTCACGTCTTC+AGG 0.315903 7.3:+407137 None:intergenic
TGTTGAGTATCACAGCTTCT+AGG 0.370545 7.3:+407605 None:intergenic
TCTCACCAGTCTCTGCATTT+CGG 0.377067 7.3:+407462 None:intergenic
CAGAGACTGGTGAGAGTAAA+GGG 0.393341 7.3:-407454 MS.gene001541:CDS
CTCCAAGTAGTGGCTGCTTA+TGG 0.394918 7.3:+407777 None:intergenic
CCACAGACCTTCAAGATACT+TGG 0.412231 7.3:-404715 MS.gene001541:CDS
GGTTCTAGAGTGCAAGTTAG+AGG 0.426449 7.3:+404569 None:intergenic
TACCATAAGCAGCCACTACT+TGG 0.428423 7.3:-407779 MS.gene001541:CDS
TGAGACTCCAAGTATCTTGA+AGG 0.438931 7.3:+404708 None:intergenic
TTTGCAATTACATATAGAAT+TGG 0.441644 7.3:+404661 None:intergenic
TGCAGACGTAAACTTGGGTT+GGG 0.442375 7.3:+407633 None:intergenic
GGTGTTGCAAGATTTCAATC+AGG 0.443133 7.3:-407084 MS.gene001541:CDS
TTCCCAACATACACCTTATG+AGG 0.456223 7.3:+407179 None:intergenic
TCCCCTCTTGTTGATGAAAT+GGG 0.461614 7.3:-404395 MS.gene001541:CDS
GAAGGTTGCAGACGTAAACT+TGG 0.462333 7.3:+407627 None:intergenic
TAACGAAGTGGAAGAGAAAG+AGG 0.463472 7.3:+407805 None:intergenic
TGTTGGTGGGCGCGAAATGC+GGG 0.472414 7.3:-407282 MS.gene001541:CDS
CAAGTATCTTGAAGGTCTGT+GGG 0.476470 7.3:+404716 None:intergenic
CTTTGGTAAATTTGGAAATG+TGG 0.479793 7.3:-407117 MS.gene001541:CDS
GCAGAGACTGGTGAGAGTAA+AGG 0.480321 7.3:-407455 MS.gene001541:CDS
GTCCTCATAAGGTGTATGTT+GGG 0.485859 7.3:-407181 MS.gene001541:CDS
TTGCAGACGTAAACTTGGGT+TGG 0.485972 7.3:+407632 None:intergenic
ATACTATGAAGGTCCTCATA+AGG 0.498833 7.3:-407192 MS.gene001541:CDS
GAAGACGTGAGACATCTCTT+TGG 0.500754 7.3:-407134 MS.gene001541:CDS
AATGCAATTGCTGCATTGGA+TGG 0.502487 7.3:-407392 MS.gene001541:CDS
GGGAGTGCTTATGTCACAAT+GGG 0.508546 7.3:-407434 MS.gene001541:CDS
TCGTTTGAATTGAAGGATGT+TGG 0.510713 7.3:-407299 MS.gene001541:intron
ACAACCACGTAAGTTGAAGC+TGG 0.512125 7.3:-407660 MS.gene001541:CDS
CGCGAGGAGAAAGAAGGATA+AGG 0.512495 7.3:+407716 None:intergenic
GGTCCTCATAAGGTGTATGT+TGG 0.523656 7.3:-407182 MS.gene001541:CDS
GAAACACAGAGTAGCAGAGT+TGG 0.527590 7.3:+407829 None:intergenic
GTATATAGTTCTTCTTCTCA+CGG 0.533646 7.3:+407211 None:intergenic
AGAAGAACTATATACTATGA+AGG 0.536527 7.3:-407203 MS.gene001541:CDS
CCAAGTATCTTGAAGGTCTG+TGG 0.539573 7.3:+404715 None:intergenic
ATGTTGGTGGGCGCGAAATG+CGG 0.539679 7.3:-407283 MS.gene001541:CDS
TATATAGTTCTTCTTCTCAC+GGG 0.541659 7.3:+407212 None:intergenic
CAACCACGTAAGTTGAAGCT+GGG 0.548485 7.3:-407659 MS.gene001541:CDS
AAGCAGCCACTACTTGGAGT+TGG 0.552480 7.3:-407773 MS.gene001541:CDS
GAGGAGTGAAGAGATGAAGT+AGG 0.557135 7.3:+407582 None:intergenic
CTGTGACGCGAGGAGAAAGA+AGG 0.561006 7.3:+407710 None:intergenic
GTGTTGCAAGATTTCAATCA+GGG 0.561480 7.3:-407083 MS.gene001541:CDS
TTTGAATTGAAGGATGTTGG+TGG 0.563904 7.3:-407296 MS.gene001541:intron
GTTTGCCGAAATGCAGAGAC+TGG 0.571702 7.3:-407467 MS.gene001541:CDS
AGTTTCATTGAGGGACAAAG+AGG 0.576058 7.3:+407004 None:intergenic
TTGAATTGAAGGATGTTGGT+GGG 0.579799 7.3:-407295 MS.gene001541:intron
GTTCTAGAGTGCAAGTTAGA+GGG 0.587673 7.3:+404570 None:intergenic
GAGTATCCAACTCCAAGTAG+TGG 0.587862 7.3:+407767 None:intergenic
GAGTATCACAGCTTCTAGGA+AGG 0.590293 7.3:+407609 None:intergenic
CTTCATCTCTTCACTCCTCA+CGG 0.594839 7.3:-407578 MS.gene001541:CDS
AGCCCATTTCATCAACAAGA+GGG 0.597615 7.3:+404393 None:intergenic
TTCCCCAGCTTCAACTTACG+TGG 0.601446 7.3:+407656 None:intergenic
AGGGAGTGCTTATGTCACAA+TGG 0.612091 7.3:-407435 MS.gene001541:CDS
AAGGTTGCAGACGTAAACTT+GGG 0.613456 7.3:+407628 None:intergenic
TAGCCCATTTCATCAACAAG+AGG 0.616855 7.3:+404392 None:intergenic
GGAATGCTGCTAAGTTGTTG+CGG 0.619643 7.3:+404591 None:intergenic
AATGGACGCGCTGTGACGCG+AGG 0.621619 7.3:+407700 None:intergenic
TGGAAATGTGGCTAGTGTGA+GGG 0.626364 7.3:-407105 MS.gene001541:CDS
ATAGTTCTTCTTCTCACGGG+AGG 0.629773 7.3:+407215 None:intergenic
AATTGCTGCATTGGATGGAT+CGG 0.641488 7.3:-407387 MS.gene001541:intron
TTGGAAATGTGGCTAGTGTG+AGG 0.645229 7.3:-407106 MS.gene001541:CDS
ACGTACCTCGGTAGATAGAA+CGG 0.653839 7.3:+407553 None:intergenic
TTGTGAGAGATAAGAGACAA+AGG 0.657808 7.3:+407040 None:intergenic
AAGTATCTTGAAGGTCTGTG+GGG 0.658514 7.3:+404717 None:intergenic
AACCACGTAAGTTGAAGCTG+GGG 0.663989 7.3:-407658 MS.gene001541:CDS
GCCCATTTCATCAACAAGAG+GGG 0.664519 7.3:+404394 None:intergenic
AGTATCTTGAAGGTCTGTGG+GGG 0.679202 7.3:+404718 None:intergenic
CTTATGGTAGAGTAACGAAG+TGG 0.680507 7.3:+407793 None:intergenic
TGTTGCAAGATTTCAATCAG+GGG 0.681995 7.3:-407082 MS.gene001541:CDS
AAGAGACAAAGGCATAGACA+CGG 0.730141 7.3:+407051 None:intergenic
GTAGATAGAACGGTACCGTG+AGG 0.731002 7.3:+407563 None:intergenic
CGGTACCGTTCTATCTACCG+AGG 0.742490 7.3:-407558 MS.gene001541:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAGTAACTTCAATAAAA+AGG + chr7.3:407763-407782 None:intergenic 15.0%
!! AAAAGTAACTTCAATAAAAA+GGG + chr7.3:407762-407781 None:intergenic 15.0%
!! AATAAATTAAAATAGATCAC+AGG + chr7.3:406395-406414 None:intergenic 15.0%
!! ACTTATATATATAACTATAG+AGG - chr7.3:405630-405649 MS.gene001541:intron 15.0%
!! ATTAGAACTTTAAACTTTAT+TGG + chr7.3:406503-406522 None:intergenic 15.0%
!! TTAGAACTTTAAACTTTATT+GGG + chr7.3:406502-406521 None:intergenic 15.0%
!! TTATAATGTTAAATCAAACA+CGG - chr7.3:405862-405881 MS.gene001541:intron 15.0%
!!! TTTACATTATAATTTTCTCA+TGG + chr7.3:407725-407744 None:intergenic 15.0%
!!! TTTACTTTTGCAAATTAATT+TGG + chr7.3:407277-407296 None:intergenic 15.0%
!! AAGTATCTATAGATATGTAA+AGG + chr7.3:405666-405685 None:intergenic 20.0%
!! AATGTTGCAACAATTATAAA+TGG + chr7.3:407055-407074 None:intergenic 20.0%
!! ATTTGAAAAAAGCTGTAATT+AGG + chr7.3:405362-405381 None:intergenic 20.0%
!! CATTATTACTTGTAATGTAA+TGG - chr7.3:404698-404717 MS.gene001541:CDS 20.0%
!! TAACAACTAATTTAGTACAT+AGG - chr7.3:407426-407445 MS.gene001541:CDS 20.0%
!! TTTGCAATTACATATAGAAT+TGG + chr7.3:407553-407572 None:intergenic 20.0%
!!! AATGAAAAACCATATTTTGA+TGG + chr7.3:405524-405543 None:intergenic 20.0%
!!! ATATTTTACAGTTTCATTGA+GGG + chr7.3:405219-405238 None:intergenic 20.0%
!!! TAATTACCCAAGATATTTTT+CGG - chr7.3:405836-405855 MS.gene001541:intron 20.0%
! AAAGCTTCAAATTCTGTATA+AGG + chr7.3:406808-406827 None:intergenic 25.0%
! AAATATATGAATATGTGGAG+TGG - chr7.3:406615-406634 MS.gene001541:intron 25.0%
! AAATGTAATGAGTAATGAGA+AGG + chr7.3:406342-406361 None:intergenic 25.0%
! AAGGCAAATATATGAATATG+TGG - chr7.3:406610-406629 MS.gene001541:intron 25.0%
! AGAAGAACTATATACTATGA+AGG - chr7.3:405008-405027 MS.gene001541:intron 25.0%
! AGAGAACAATAAAATAGAAG+AGG + chr7.3:406366-406385 None:intergenic 25.0%
! AGAGTAAAATGTAAAAGAAG+AGG + chr7.3:406293-406312 None:intergenic 25.0%
! AGTTAATACATCTACTCATA+CGG + chr7.3:406701-406720 None:intergenic 25.0%
! ATAAAACCCGAAAAATATCT+TGG + chr7.3:405846-405865 None:intergenic 25.0%
! ATTGTCAAGACACTAATTAT+AGG + chr7.3:407680-407699 None:intergenic 25.0%
! CAAATCAAAAGTTTAGGAAA+TGG + chr7.3:406006-406025 None:intergenic 25.0%
! GCTTTACAAATCAAAAGTTT+AGG + chr7.3:406012-406031 None:intergenic 25.0%
! GTAATTGTTCCATCAAAATA+TGG - chr7.3:405512-405531 MS.gene001541:intron 25.0%
! TAAAACCCGAAAAATATCTT+GGG + chr7.3:405845-405864 None:intergenic 25.0%
!! AATTACCCAAGATATTTTTC+GGG - chr7.3:405837-405856 MS.gene001541:intron 25.0%
!! ACAGAGAATATTGCAATTTT+GGG - chr7.3:405387-405406 MS.gene001541:intron 25.0%
!! CATATTTTACAGTTTCATTG+AGG + chr7.3:405220-405239 None:intergenic 25.0%
!!! AAGCTTTTTCTTTGGATTTT+TGG - chr7.3:406821-406840 MS.gene001541:intron 25.0%
!!! AGAATTTGAAGCTTTTTCTT+TGG - chr7.3:406813-406832 MS.gene001541:intron 25.0%
!!! AGCTTTTTCTTTGGATTTTT+GGG - chr7.3:406822-406841 MS.gene001541:intron 25.0%
!!! TTGTTTTTCGTTTGAATTGA+AGG - chr7.3:404905-404924 MS.gene001541:intron 25.0%
AATTCATCTGATGGTTGAAA+AGG + chr7.3:405958-405977 None:intergenic 30.0%
AGAATTTCAACCTTTCTCAT+TGG - chr7.3:406756-406775 MS.gene001541:intron 30.0%
AGACATCTCTTTGGTAAATT+TGG - chr7.3:405086-405105 MS.gene001541:intron 30.0%
ATTGGGTAATCAATCTCATA+TGG + chr7.3:406485-406504 None:intergenic 30.0%
CTGACGAAAAAAGAAATGAA+AGG - chr7.3:406153-406172 MS.gene001541:intron 30.0%
CTGTCATAAACCTTAAAAAG+TGG - chr7.3:407232-407251 MS.gene001541:CDS 30.0%
CTTGATTCTCATATTGAAGT+AGG + chr7.3:407096-407115 None:intergenic 30.0%
CTTTGGTAAATTTGGAAATG+TGG - chr7.3:405094-405113 MS.gene001541:intron 30.0%
GCAGTAGAAAAAGTGAAAAA+AGG + chr7.3:405249-405268 None:intergenic 30.0%
GTAGAAAAAGTGAAAAAAGG+TGG + chr7.3:405246-405265 None:intergenic 30.0%
GTATATAGTTCTTCTTCTCA+CGG + chr7.3:405003-405022 None:intergenic 30.0%
GTATGTAAAATTGCAATCTC+CGG - chr7.3:405558-405577 MS.gene001541:intron 30.0%
TAAAAATGCAATTGCTGCAT+TGG - chr7.3:404815-404834 MS.gene001541:intron 30.0%
TATATAGTTCTTCTTCTCAC+GGG + chr7.3:405002-405021 None:intergenic 30.0%
TATGAGAATCAAGCTTATTC+TGG - chr7.3:407103-407122 MS.gene001541:CDS 30.0%
TGAGCATTAAATTCATCTGA+TGG + chr7.3:405967-405986 None:intergenic 30.0%
TTACTCAACACATCGAAATT+AGG + chr7.3:406556-406575 None:intergenic 30.0%
TTGTAGGAATGTTTCGTTAA+GGG - chr7.3:406199-406218 MS.gene001541:intron 30.0%
TTTGATGGAACAATTACAGT+AGG + chr7.3:405509-405528 None:intergenic 30.0%
! AATCACTCGTTACTTTACAA+TGG + chr7.3:406903-406922 None:intergenic 30.0%
! ATAATTTTCTCATGGACTCA+TGG + chr7.3:407717-407736 None:intergenic 30.0%
! CACAGAGAATATTGCAATTT+TGG - chr7.3:405386-405405 MS.gene001541:intron 30.0%
! TTCTTCTTCGTTTTCTACAA+TGG + chr7.3:404532-404551 None:intergenic 30.0%
!! AATTATAGGTGTTACTTTGC+AGG + chr7.3:407666-407685 None:intergenic 30.0%
!!! CCAAGTGCATATTTAGTTTT+CGG - chr7.3:405705-405724 MS.gene001541:intron 30.0%
AAAGCTTAAAACTACTCGCA+TGG - chr7.3:406027-406046 MS.gene001541:intron 35.0%
AAGGGAAATATTTGCGTATG+TGG - chr7.3:406655-406674 MS.gene001541:intron 35.0%
AGGAAACGAAAATTGCAGAA+AGG + chr7.3:406322-406341 None:intergenic 35.0%
ATACTATGAAGGTCCTCATA+AGG - chr7.3:405019-405038 MS.gene001541:intron 35.0%
ATCTTATAATGCTGTGCTGT+AGG - chr7.3:404722-404741 MS.gene001541:CDS 35.0%
ATGCTAAGTAGTCTGCAATA+GGG + chr7.3:405778-405797 None:intergenic 35.0%
ATGCTCAAAATTAAGCCATG+CGG - chr7.3:405980-405999 MS.gene001541:intron 35.0%
CCGAAAACTAAATATGCACT+TGG + chr7.3:405708-405727 None:intergenic 35.0%
GAAAAAGTGAAAAAAGGTGG+AGG + chr7.3:405243-405262 None:intergenic 35.0%
GAAGATTCTGGCATCAATAT+TGG + chr7.3:405452-405471 None:intergenic 35.0%
GTGTTGCAAGATTTCAATCA+GGG - chr7.3:405128-405147 MS.gene001541:intron 35.0%
GTTGAGTAATGTCTTGATGT+TGG - chr7.3:406567-406586 MS.gene001541:intron 35.0%
GTTGTAGGAATGTTTCGTTA+AGG - chr7.3:406198-406217 MS.gene001541:intron 35.0%
TCGTTTGAATTGAAGGATGT+TGG - chr7.3:404912-404931 MS.gene001541:intron 35.0%
TGCTATGAGCTGATTAATTG+AGG + chr7.3:407191-407210 None:intergenic 35.0%
TGTTAAATCAAACACGGCAT+TGG - chr7.3:405868-405887 MS.gene001541:intron 35.0%
TGTTGCAAGATTTCAATCAG+GGG - chr7.3:405129-405148 MS.gene001541:intron 35.0%
TTGAATTGAAGGATGTTGGT+GGG - chr7.3:404916-404935 MS.gene001541:intron 35.0%
TTGTGAGAGATAAGAGACAA+AGG + chr7.3:405174-405193 None:intergenic 35.0%
TTTGAATTGAAGGATGTTGG+TGG - chr7.3:404915-404934 MS.gene001541:intron 35.0%
! AACCTTTCTCATTGGACTTT+TGG - chr7.3:406764-406783 MS.gene001541:intron 35.0%
! AACTTTTATGTCAGCTGCAT+GGG - chr7.3:406717-406736 MS.gene001541:intron 35.0%
! GAACATAGTTTTCATTGCGA+GGG - chr7.3:405595-405614 MS.gene001541:intron 35.0%
! TAACTTTTATGTCAGCTGCA+TGG - chr7.3:406716-406735 MS.gene001541:intron 35.0%
! TTGTTCTTGCAGCAATTTTG+TGG - chr7.3:405295-405314 MS.gene001541:intron 35.0%
!! TATTGCAATTTTGGGTGTCT+CGG - chr7.3:405395-405414 MS.gene001541:intron 35.0%
!! TTCGTTAAGGGTGTTTGATT+GGG - chr7.3:406211-406230 MS.gene001541:intron 35.0%
!! TTTCGTTAAGGGTGTTTGAT+TGG - chr7.3:406210-406229 MS.gene001541:intron 35.0%
!!! AGTGCATATTTAGTTTTCGG+AGG - chr7.3:405708-405727 MS.gene001541:intron 35.0%
AAACATCTGAGCTACATGAC+TGG - chr7.3:406176-406195 MS.gene001541:intron 40.0%
AAGGTTGCAGACGTAAACTT+GGG + chr7.3:404586-404605 None:intergenic 40.0%
AAGTATCTTGAAGGTCTGTG+GGG + chr7.3:407497-407516 None:intergenic 40.0%
AATGCAATTGCTGCATTGGA+TGG - chr7.3:404819-404838 MS.gene001541:intron 40.0%
AATTGCTGCATTGGATGGAT+CGG - chr7.3:404824-404843 MS.gene001541:intron 40.0%
AGCAACATACTTACGTACCT+CGG + chr7.3:404673-404692 None:intergenic 40.0%
AGCCCATTTCATCAACAAGA+GGG + chr7.3:407821-407840 None:intergenic 40.0%
AGTTTCATTGAGGGACAAAG+AGG + chr7.3:405210-405229 None:intergenic 40.0%
CAAGTATCTTGAAGGTCTGT+GGG + chr7.3:407498-407517 None:intergenic 40.0%
CATGCTAAGTAGTCTGCAAT+AGG + chr7.3:405779-405798 None:intergenic 40.0%
CATTGAGTACTCAAAGGCAA+AGG - chr7.3:406591-406610 MS.gene001541:intron 40.0%
CTTATGGTAGAGTAACGAAG+TGG + chr7.3:404421-404440 None:intergenic 40.0%
CTTTGCCTTTGAGTACTCAA+TGG + chr7.3:406593-406612 None:intergenic 40.0%
GAGTGATCATGCAAGACAAA+GGG - chr7.3:406637-406656 MS.gene001541:intron 40.0%
GATGGTTGAAAAGGAGTGAA+CGG + chr7.3:405949-405968 None:intergenic 40.0%
GTCCAAAAGTCCAATGAGAA+AGG + chr7.3:406769-406788 None:intergenic 40.0%
GTCCTCATAAGGTGTATGTT+GGG - chr7.3:405030-405049 MS.gene001541:intron 40.0%
GTTAAGAGAGGGTCAATTAC+TGG + chr7.3:406053-406072 None:intergenic 40.0%
TAACGAAGTGGAAGAGAAAG+AGG + chr7.3:404409-404428 None:intergenic 40.0%
TAGCCCATTTCATCAACAAG+AGG + chr7.3:407822-407841 None:intergenic 40.0%
TGAGACTCCAAGTATCTTGA+AGG + chr7.3:407506-407525 None:intergenic 40.0%
TGTTGAGTATCACAGCTTCT+AGG + chr7.3:404609-404628 None:intergenic 40.0%
TTCCCAACATACACCTTATG+AGG + chr7.3:405035-405054 None:intergenic 40.0%
TTTCTCGTTCAGGAAGATTC+TGG + chr7.3:405464-405483 None:intergenic 40.0%
! AAGAGACAAAGGCATAGACA+CGG + chr7.3:405163-405182 None:intergenic 40.0%
! ATTTTGTGGTCGAACTCTAG+TGG - chr7.3:405309-405328 MS.gene001541:intron 40.0%
! CATTGGACTTTTGGACTGAT+AGG - chr7.3:406773-406792 MS.gene001541:intron 40.0%
! GGAACATAGTTTTCATTGCG+AGG - chr7.3:405594-405613 MS.gene001541:intron 40.0%
! GGTGTTGCAAGATTTCAATC+AGG - chr7.3:405127-405146 MS.gene001541:intron 40.0%
! TCAGTCGTATTTTGCAGACA+CGG + chr7.3:406137-406156 None:intergenic 40.0%
! TCCCCTCTTGTTGATGAAAT+GGG - chr7.3:407816-407835 MS.gene001541:CDS 40.0%
!! AATGAAAGCATTGTGCATCG+TGG + chr7.3:407308-407327 None:intergenic 40.0%
!! AGTTTTCATTGCGAGGGTAT+TGG - chr7.3:405601-405620 MS.gene001541:intron 40.0%
!! ATGAAAGCATTGTGCATCGT+GGG + chr7.3:407307-407326 None:intergenic 40.0%
!! GTTCTAGAGTGCAAGTTAGA+GGG + chr7.3:407644-407663 None:intergenic 40.0%
!! TCGTTAAGGGTGTTTGATTG+GGG - chr7.3:406212-406231 MS.gene001541:intron 40.0%
!!! GAGCATCACTCCACTTTTTA+AGG + chr7.3:407245-407264 None:intergenic 40.0%
AAGAGATGTCTCACGTCTTC+AGG + chr7.3:405077-405096 None:intergenic 45.0%
AAGAGGACCTCTATTTCCAC+AGG + chr7.3:406276-406295 None:intergenic 45.0%
AAGTTTAGGAAATGGCCGCA+TGG + chr7.3:405998-406017 None:intergenic 45.0%
ACGTACCTCGGTAGATAGAA+CGG + chr7.3:404661-404680 None:intergenic 45.0%
AGTATCTTGAAGGTCTGTGG+GGG + chr7.3:407496-407515 None:intergenic 45.0%
ATAGTTCTTCTTCTCACGGG+AGG + chr7.3:404999-405018 None:intergenic 45.0%
ATCGCATACAGGGTTAAGAG+AGG + chr7.3:406065-406084 None:intergenic 45.0%
CAGAGACTGGTGAGAGTAAA+GGG - chr7.3:404757-404776 MS.gene001541:intron 45.0%
CCAAGTATCTTGAAGGTCTG+TGG + chr7.3:407499-407518 None:intergenic 45.0%
CCACAGACCTTCAAGATACT+TGG - chr7.3:407496-407515 MS.gene001541:intron 45.0%
CCTGAACGAGAAAATTCAGC+TGG - chr7.3:405471-405490 MS.gene001541:intron 45.0%
CGAACTCTAGTGGTTAGAGA+GGG - chr7.3:405319-405338 MS.gene001541:intron 45.0%
CGAGAAAATTCAGCTGGAAG+TGG - chr7.3:405477-405496 MS.gene001541:intron 45.0%
CTTCATCTCTTCACTCCTCA+CGG - chr7.3:404633-404652 MS.gene001541:CDS 45.0%
GAAAATTCAGCTGGAAGTGG+AGG - chr7.3:405480-405499 MS.gene001541:intron 45.0%
GAAACACAGAGTAGCAGAGT+TGG + chr7.3:404385-404404 None:intergenic 45.0%
GAAGACGTGAGACATCTCTT+TGG - chr7.3:405077-405096 MS.gene001541:intron 45.0%
GAAGGTTGCAGACGTAAACT+TGG + chr7.3:404587-404606 None:intergenic 45.0%
GAGGAGTGAAGAGATGAAGT+AGG + chr7.3:404632-404651 None:intergenic 45.0%
GAGTATCCAACTCCAAGTAG+TGG + chr7.3:404447-404466 None:intergenic 45.0%
GCCCATTTCATCAACAAGAG+GGG + chr7.3:407820-407839 None:intergenic 45.0%
GCTGCAAGAACAAGACTAGT+AGG + chr7.3:405288-405307 None:intergenic 45.0%
GGAATGCTGCTAAGTTGTTG+CGG + chr7.3:407623-407642 None:intergenic 45.0%
GGAGTGATCATGCAAGACAA+AGG - chr7.3:406636-406655 MS.gene001541:intron 45.0%
GGTCCTCATAAGGTGTATGT+TGG - chr7.3:405029-405048 MS.gene001541:intron 45.0%
GTGCATGTTTGGTTAGGATC+TGG - chr7.3:405890-405909 MS.gene001541:intron 45.0%
GTTGGCCATTGAGTACTCAA+AGG - chr7.3:406585-406604 MS.gene001541:intron 45.0%
TACCATAAGCAGCCACTACT+TGG - chr7.3:404432-404451 MS.gene001541:intron 45.0%
TCGAACTCTAGTGGTTAGAG+AGG - chr7.3:405318-405337 MS.gene001541:intron 45.0%
TCGCATACAGGGTTAAGAGA+GGG + chr7.3:406064-406083 None:intergenic 45.0%
TCTCACCAGTCTCTGCATTT+CGG + chr7.3:404752-404771 None:intergenic 45.0%
TGCAGACGTAAACTTGGGTT+GGG + chr7.3:404581-404600 None:intergenic 45.0%
TGGAAATGTGGCTAGTGTGA+GGG - chr7.3:405106-405125 MS.gene001541:intron 45.0%
TGTTCCATACACACAGAGAC+CGG + chr7.3:405580-405599 None:intergenic 45.0%
TTGCAGACGTAAACTTGGGT+TGG + chr7.3:404582-404601 None:intergenic 45.0%
TTGGAAATGTGGCTAGTGTG+AGG - chr7.3:405105-405124 MS.gene001541:intron 45.0%
! AACCACGTAAGTTGAAGCTG+GGG - chr7.3:404553-404572 MS.gene001541:intron 45.0%
! ACAACCACGTAAGTTGAAGC+TGG - chr7.3:404551-404570 MS.gene001541:intron 45.0%
! CAACCACGTAAGTTGAAGCT+GGG - chr7.3:404552-404571 MS.gene001541:intron 45.0%
! CCAGCTGAATTTTCTCGTTC+AGG + chr7.3:405474-405493 None:intergenic 45.0%
! CTCCCCTCTTGTTGATGAAA+TGG - chr7.3:407815-407834 MS.gene001541:CDS 45.0%
! GAGTATCACAGCTTCTAGGA+AGG + chr7.3:404605-404624 None:intergenic 45.0%
! GCATTGGTGCATGTTTGGTT+AGG - chr7.3:405884-405903 MS.gene001541:intron 45.0%
! TGAGCTACATGACTGGTTGT+AGG - chr7.3:406183-406202 MS.gene001541:intron 45.0%
!! AGGGAGTGCTTATGTCACAA+TGG - chr7.3:404776-404795 MS.gene001541:intron 45.0%
!! GGGAGTGCTTATGTCACAAT+GGG - chr7.3:404777-404796 MS.gene001541:intron 45.0%
!! GGTTCTAGAGTGCAAGTTAG+AGG + chr7.3:407645-407664 None:intergenic 45.0%
!! TTGTTTTTCGTTCCGCTGAG+GGG + chr7.3:407592-407611 None:intergenic 45.0%
!!! GTTGTTTTTCGTTCCGCTGA+GGG + chr7.3:407593-407612 None:intergenic 45.0%
!!! TGTTGTTTTTCGTTCCGCTG+AGG + chr7.3:407594-407613 None:intergenic 45.0%
AAGCAGCCACTACTTGGAGT+TGG - chr7.3:404438-404457 MS.gene001541:intron 50.0%
ATCTCCGGTCTCTGTGTGTA+TGG - chr7.3:405573-405592 MS.gene001541:intron 50.0%
CGCGAGGAGAAAGAAGGATA+AGG + chr7.3:404498-404517 None:intergenic 50.0%
CTCCAAGTAGTGGCTGCTTA+TGG + chr7.3:404437-404456 None:intergenic 50.0%
GCAGAGACTGGTGAGAGTAA+AGG - chr7.3:404756-404775 MS.gene001541:intron 50.0%
GTAGATAGAACGGTACCGTG+AGG + chr7.3:404651-404670 None:intergenic 50.0%
GTTTGCCGAAATGCAGAGAC+TGG - chr7.3:404744-404763 MS.gene001541:intron 50.0%
TAACCCTGTATGCGATCCGT+GGG - chr7.3:406069-406088 MS.gene001541:intron 50.0%
TCTAGTGGTTAGAGAGGGTG+TGG - chr7.3:405324-405343 MS.gene001541:intron 50.0%
TTAACCCTGTATGCGATCCG+TGG - chr7.3:406068-406087 MS.gene001541:intron 50.0%
TTCCCCAGCTTCAACTTACG+TGG + chr7.3:404558-404577 None:intergenic 50.0%
! TGTTTTTCGTTCCGCTGAGG+GGG + chr7.3:407591-407610 None:intergenic 50.0%
!! ACACGGCATTGGTGCATGTT+TGG - chr7.3:405879-405898 MS.gene001541:intron 50.0%
!! ATTTTGGGTGTCTCGGATGG+AGG - chr7.3:405402-405421 MS.gene001541:intron 50.0%
!! CACTGCTTTTATCTCCCCCA+CGG + chr7.3:406088-406107 None:intergenic 50.0%
!! GCAATTTTGGGTGTCTCGGA+TGG - chr7.3:405399-405418 MS.gene001541:intron 50.0%
AACCCTGTATGCGATCCGTG+GGG - chr7.3:406070-406089 MS.gene001541:intron 55.0%
ACACGGTTGCGTCCAAACGT+CGG + chr7.3:406120-406139 None:intergenic 55.0%
AGCCTGGCCTGTGGAAATAG+AGG - chr7.3:406266-406285 MS.gene001541:intron 55.0%
ATGGAGGAAGCTCTCTGCTC+TGG - chr7.3:405418-405437 MS.gene001541:intron 55.0%
CGGTACCGTTCTATCTACCG+AGG - chr7.3:404653-404672 MS.gene001541:CDS 55.0%
CGTGGGGGAGATAAAAGCAG+TGG - chr7.3:406086-406105 MS.gene001541:intron 55.0%
CTGTGACGCGAGGAGAAAGA+AGG + chr7.3:404504-404523 None:intergenic 55.0%
GACCTCTATTTCCACAGGCC+AGG + chr7.3:406271-406290 None:intergenic 55.0%
GGGAGATAAAAGCAGTGGCC+TGG - chr7.3:406091-406110 MS.gene001541:intron 55.0%
TAATGTCCGCACCAGAACGC+TGG - chr7.3:405919-405938 MS.gene001541:intron 55.0%
! ATGTTGGTGGGCGCGAAATG+CGG - chr7.3:404928-404947 MS.gene001541:intron 55.0%
! GTTTTTCGTTCCGCTGAGGG+GGG + chr7.3:407590-407609 None:intergenic 55.0%
ACCCTGTATGCGATCCGTGG+GGG - chr7.3:406071-406090 MS.gene001541:intron 60.0%
GACAGAGCAGCAATGGGCGA+TGG - chr7.3:406237-406256 MS.gene001541:intron 60.0%
GGGGCTGACAGAGCAGCAAT+GGG - chr7.3:406231-406250 MS.gene001541:intron 60.0%
GTAGCAACAACCCCCCTCAG+CGG - chr7.3:407577-407596 MS.gene001541:CDS 60.0%
TCCCCCACGGATCGCATACA+GGG + chr7.3:406075-406094 None:intergenic 60.0%
TGAACGGCACTCCAGCGTTC+TGG + chr7.3:405933-405952 None:intergenic 60.0%
TGGGGCTGACAGAGCAGCAA+TGG - chr7.3:406230-406249 MS.gene001541:intron 60.0%
! TGTTGGTGGGCGCGAAATGC+GGG - chr7.3:404929-404948 MS.gene001541:intron 60.0%
AATGGACGCGCTGTGACGCG+AGG + chr7.3:404514-404533 None:intergenic 65.0%
CTCCCCCACGGATCGCATAC+AGG + chr7.3:406076-406095 None:intergenic 65.0%
GCGTCCAAACGTCGGCAACC+AGG + chr7.3:406112-406131 None:intergenic 65.0%
GGCACTCCAGCGTTCTGGTG+CGG + chr7.3:405928-405947 None:intergenic 65.0%
GTGGCCTGGTTGCCGACGTT+TGG - chr7.3:406105-406124 MS.gene001541:intron 65.0%
TGGCTGCTGAGCCTGGCCTG+TGG - chr7.3:406257-406276 MS.gene001541:intron 70.0%
TGGGCGATGGCTGCTGAGCC+TGG - chr7.3:406250-406269 MS.gene001541:intron 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 404375 407858 404375 ID=MS.gene001541
chr7.3 mRNA 404375 407858 404375 ID=MS.gene001541.t1;Parent=MS.gene001541
chr7.3 exon 407559 407858 407559 ID=MS.gene001541.t1.exon1;Parent=MS.gene001541.t1
chr7.3 CDS 407559 407858 407559 ID=cds.MS.gene001541.t1;Parent=MS.gene001541.t1
chr7.3 exon 407388 407489 407388 ID=MS.gene001541.t1.exon2;Parent=MS.gene001541.t1
chr7.3 CDS 407388 407489 407388 ID=cds.MS.gene001541.t1;Parent=MS.gene001541.t1
chr7.3 exon 407004 407306 407004 ID=MS.gene001541.t1.exon3;Parent=MS.gene001541.t1
chr7.3 CDS 407004 407306 407004 ID=cds.MS.gene001541.t1;Parent=MS.gene001541.t1
chr7.3 exon 404563 404741 404563 ID=MS.gene001541.t1.exon4;Parent=MS.gene001541.t1
chr7.3 CDS 404563 404741 404563 ID=cds.MS.gene001541.t1;Parent=MS.gene001541.t1
chr7.3 exon 404375 404429 404375 ID=MS.gene001541.t1.exon5;Parent=MS.gene001541.t1
chr7.3 CDS 404375 404429 404375 ID=cds.MS.gene001541.t1;Parent=MS.gene001541.t1
Gene Sequence

>MS.gene001541

ATGGCTGCCAACTCTGCTACTCTGTGTTTCTCCTCTTTCTCTTCCACTTCGTTACTCTACCATAAGCAGCCACTACTTGGAGTTGGATACTCAAAACGATTCGTTTCGTTTTCTGCGCTGCCTTATCCTTCTTTCTCCTCGCGTCACAGCGCGTCCATTGTAGAAAACGAAGAAGAACAACCACGTAAGTTGAAGCTGGGGAACCCAACCCAAGTTTACGTCTGCAACCTTCCTAGAAGCTGTGATACTCAACACCTACTTCATCTCTTCACTCCTCACGGTACCGTTCTATCTACCGAGGTACGTAAGTATGTTGCTTTCTTCATTATTACTTGTAATGTAATGGAATCTTATAATGCTGTGCTGTAGGTTTGCCGAAATGCAGAGACTGGTGAGAGTAAAGGGAGTGCTTATGTCACAATGGGATCTTATAATGCTGCTAAAAATGCAATTGCTGCATTGGATGGATCGGTTAGTCACTATCATATCTAATAAATGCACTTGCTGCAATGCATCTGAATAATGAAACTTTGTTTTTCGTTTGAATTGAAGGATGTTGGTGGGCGCGAAATGCGGGTTAAATTTTCTGTTGAGATGAATAATTTAGAGACATTGAACTCACCTCCCGTGAGAAGAAGAACTATATACTATGAAGGTCCTCATAAGGTGTATGTTGGGAATCTCGCTAAGTCTGCTACACCTGAAGACGTGAGACATCTCTTTGGTAAATTTGGAAATGTGGCTAGTGTGAGGGTGTTGCAAGATTTCAATCAGGGGAAAAAAAGCCGTGTCTATGCCTTTGTCTCTTATCTCTCACAAAGAGAACGTGACGCCTCTTTGTCCCTCAATGAAACTGTAAAATATGCCTCCACCTTTTTTCACTTTTTCTACTGCTTATTTCTATCTCATGCCTACTAGTCTTGTTCTTGCAGCAATTTTGTGGTCGAACTCTAGTGGTTAGAGAGGGTGTGGAGAAGACTGAGACCTAATTACAGCTTTTTTCAAATTCTGCACAGAGAATATTGCAATTTTGGGTGTCTCGGATGGAGGAAGCTCTCTGCTCTGGTACGATGACCAATATTGATGCCAGAATCTTCCTGAACGAGAAAATTCAGCTGGAAGTGGAGGTGTCCTACTGTAATTGTTCCATCAAAATATGGTTTTTCATTCTTGTATCTTTTTTGTATGTAAAATTGCAATCTCCGGTCTCTGTGTGTATGGAACATAGTTTTCATTGCGAGGGTATTGGTCTAGAACTTATATATATAACTATAGAGGAACTTTTATTCCTTTACATATCTATAGATACTTAATCTGTAATGCGTACTGACCAAGTGCATATTTAGTTTTCGGAGGTCTATAACACAATTTAAAAACTGACACTTAGTTGAACTTGAACACCCTATTGCAGACTACTTAGCATGTGTTTGATTTATCATTGAAAAACTCTAAACATATAATTAATTACCCAAGATATTTTTCGGGTTTTATAATGTTAAATCAAACACGGCATTGGTGCATGTTTGGTTAGGATCTGGATTCTCTAATGTCCGCACCAGAACGCTGGAGTGCCGTTCACTCCTTTTCAACCATCAGATGAATTTAATGCTCAAAATTAAGCCATGCGGCCATTTCCTAAACTTTTGATTTGTAAAGCTTAAAACTACTCGCATGGCCAGTAATTGACCCTCTCTTAACCCTGTATGCGATCCGTGGGGGAGATAAAAGCAGTGGCCTGGTTGCCGACGTTTGGACGCAACCGTGTCTGCAAAATACGACTGACGAAAAAAGAAATGAAAGGAAACATCTGAGCTACATGACTGGTTGTAGGAATGTTTCGTTAAGGGTGTTTGATTGGGGCTGACAGAGCAGCAATGGGCGATGGCTGCTGAGCCTGGCCTGTGGAAATAGAGGTCCTCTTCTTTTACATTTTACTCTTTTTTTCCTTTCTGCAATTTTCGTTTCCTTCTCATTACTCATTACATTTTCCTCTTCTATTTTATTGTTCTCTTTCAATCCTGTGATCTATTTTAATTTATTTTCTTTCTAATTGTGTCGTTGTCATCTACTTCACTTTCATTTTATAATGCACAATGTAATCTGTATGCCATATGAGATTGATTACCCAATAAAGTTTAAAGTTCTAATAAAATTGTTTCTTTTTCGCAATTTGCAATACCTAATTTCGATGTGTTGAGTAATGTCTTGATGTTGGCCATTGAGTACTCAAAGGCAAAGGCAAATATATGAATATGTGGAGTGGAGTGATCATGCAAGACAAAGGGAAATATTTGCGTATGTGGATTAATCATGAAGAGATTTGCCGTATGAGTAGATGTATTAACTTTTATGTCAGCTGCATGGGAAAACTAGAGATTCGCAGAATTTCAACCTTTCTCATTGGACTTTTGGACTGATAGGCATGATGATCCTTATACAGAATTTGAAGCTTTTTCTTTGGATTTTTGGGACTAATAGTAAATTTGTTAAGTAGTTTTAAAAATAATGTACATAGTGAAATGTTTCCATTGTAAAGTAACGAGTGATTCAATTAGTGTATGTTCTGTCAGTATAATGTGTGTAACATTGTATGAAGCTCAAGTATTTTATATGTAATGCAATTTGTTATGCTGTTATAGAAGAGCATTGTGTGAAAGTCGAGTCTACAATTGTTGTGCCATTTATAATTGTTGCAACATTGAAGTGCATTAGTGATAACCTACTTCAATATGAGAATCAAGCTTATTCTGGTTTTTTGTATAGTAATTACATGCTTCATCTCTATATCATTTATGAATCAAGCTTCAAATTAACCTCAATTAATCAGCTCATAGCAGACAAGATAAATATTAATGTGCTGTCATAAACCTTAAAAAGTGGAGTGATGCTCTTTCATGAGCCAAATTAATTTGCAAAAGTAAATAGTAAACCCACGATGCACAATGCTTTCATTGATAGAAACTTGAAATACATGCTTTCAAGAAATTACATTGTCATTTTCAAACTGAAACTTGAAACTTTTACATCGTAAGTATTGTGTACAAGTAAAACTAACAACTAATTTAGTACATAGGAGCTTCTAGTTCAACAAATTAGCTTATCGATTTGTATCTTTAGTCCCCCACAGACCTTCAAGATACTTGGAGTCTCACAATTTGCTTGTCAGTATTTGCAACCAATTCTATATGTAATTGCAAACACAGTAGCAACAACCCCCCTCAGCGGAACGAAAAACAACATGATCTCCGCAACAACTTAGCAGCATTCCCTCTAACTTGCACTCTAGAACCTGCAAAGTAACACCTATAATTAGTGTCTTGACAATCAAAGAGATTTAAACCATGAGTCCATGAGAAAATTATAATGTAAAAGAAAAAACAAACACCCTTTTTATTGAAGTTACTTTTTTTGTTTGTAAAATCATTGAAGATACTATTGCACTCCCCTCTTGTTGATGAAATGGGCTACAACCTCAAGAAGCTAA

Protein sequence

>MS.gene001541.t1

MAANSATLCFSSFSSTSLLYHKQPLLGVGYSKRFVSFSALPYPSFSSRHSASIVENEEEQPRKLKLGNPTQVYVCNLPRSCDTQHLLHLFTPHGTVLSTEVCRNAETGESKGSAYVTMGSYNAAKNAIAALDGSDVGGREMRVKFSVEMNNLETLNSPPVRRRTIYYEGPHKVYVGNLAKSATPEDVRHLFGKFGNVASVRVLQDFNQGKKSRVYAFVSYLSQRERDASLSLNETSPTDLQDTWSLTICLSVFATNSICNCKHSSNNPPQRNEKQHDLRNNLAAFPLTCTLEPAKYYCTPLLLMKWATTSRS