Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94561.t1 | XP_003631117.1 | 99.3 | 292 | 2 | 0 | 1 | 292 | 1 | 292 | 8.10E-164 | 586.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94561.t1 | Q6DRC4 | 42.0 | 300 | 148 | 9 | 4 | 289 | 3 | 290 | 7.6e-54 | 212.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94561.t1 | G7LE61 | 99.3 | 292 | 2 | 0 | 1 | 292 | 1 | 292 | 5.8e-164 | 586.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050290 | MS.gene94561 | 0.802911 | 4.48E-49 | -1.69E-46 |
| MS.gene050985 | MS.gene94561 | 0.807405 | 5.14E-50 | -1.69E-46 |
| MS.gene051850 | MS.gene94561 | 0.818172 | 2.25E-52 | -1.69E-46 |
| MS.gene054937 | MS.gene94561 | 0.844201 | 8.75E-59 | -1.69E-46 |
| MS.gene056075 | MS.gene94561 | 0.819718 | 1.00E-52 | -1.69E-46 |
| MS.gene057052 | MS.gene94561 | 0.819179 | 1.33E-52 | -1.69E-46 |
| MS.gene059726 | MS.gene94561 | 0.821704 | 3.51E-53 | -1.69E-46 |
| MS.gene060856 | MS.gene94561 | 0.816573 | 5.16E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene09852 | MS.gene94561 | PPI |
| MS.gene072769 | MS.gene94561 | PPI |
| MS.gene94561 | MS.gene64519 | PPI |
| MS.gene94561 | MS.gene060216 | PPI |
| MS.gene063366 | MS.gene94561 | PPI |
| MS.gene22748 | MS.gene94561 | PPI |
| MS.gene050695 | MS.gene94561 | PPI |
| MS.gene066163 | MS.gene94561 | PPI |
| MS.gene94561 | MS.gene024390 | PPI |
| MS.gene040581 | MS.gene94561 | PPI |
| MS.gene94561 | MS.gene22746 | PPI |
| MS.gene024645 | MS.gene94561 | PPI |
| MS.gene94561 | MS.gene039110 | PPI |
| MS.gene94561 | MS.gene048861 | PPI |
| MS.gene94561 | MS.gene89721 | PPI |
| MS.gene94561 | MS.gene55732 | PPI |
| MS.gene94561 | MS.gene63721 | PPI |
| MS.gene025858 | MS.gene94561 | PPI |
| MS.gene06001 | MS.gene94561 | PPI |
| MS.gene21636 | MS.gene94561 | PPI |
| MS.gene001541 | MS.gene94561 | PPI |
| MS.gene94561 | MS.gene019322 | PPI |
| MS.gene018560 | MS.gene94561 | PPI |
| MS.gene94561 | MS.gene061898 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94561.t1 | MTR_8g107310 | 99.315 | 292 | 2 | 0 | 1 | 292 | 1 | 292 | 0.0 | 597 |
| MS.gene94561.t1 | MTR_8g031560 | 76.289 | 291 | 56 | 3 | 3 | 292 | 2 | 280 | 3.07e-160 | 447 |
| MS.gene94561.t1 | MTR_5g017130 | 50.000 | 110 | 52 | 2 | 185 | 292 | 68 | 176 | 1.91e-26 | 102 |
| MS.gene94561.t1 | MTR_4g081510 | 38.462 | 78 | 48 | 0 | 213 | 290 | 46 | 123 | 4.86e-11 | 61.2 |
| MS.gene94561.t1 | MTR_8g022050 | 42.857 | 77 | 44 | 0 | 212 | 288 | 148 | 224 | 6.82e-11 | 62.8 |
| MS.gene94561.t1 | MTR_1g080390 | 36.842 | 76 | 48 | 0 | 215 | 290 | 286 | 361 | 7.70e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94561.t1 | AT3G11400 | 72.973 | 296 | 74 | 5 | 1 | 292 | 1 | 294 | 8.08e-156 | 436 |
| MS.gene94561.t1 | AT3G11400 | 66.873 | 323 | 74 | 5 | 1 | 292 | 1 | 321 | 8.46e-151 | 425 |
| MS.gene94561.t1 | AT5G06000 | 64.626 | 294 | 93 | 6 | 1 | 291 | 1 | 286 | 1.39e-132 | 378 |
| MS.gene94561.t1 | AT1G54080 | 41.111 | 90 | 50 | 1 | 206 | 292 | 140 | 229 | 6.76e-12 | 65.9 |
| MS.gene94561.t1 | AT3G14100 | 41.111 | 90 | 50 | 1 | 206 | 292 | 136 | 225 | 1.04e-11 | 65.5 |
| MS.gene94561.t1 | AT1G54080 | 40.426 | 94 | 49 | 2 | 206 | 292 | 140 | 233 | 2.12e-11 | 64.3 |
Find 106 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTGCAACTGATGCTGCTCC+TGG | 0.240420 | 4.1:-276099 | MS.gene94561:CDS |
| CCCAATGCTTAGGTTGTTCT+TGG | 0.243434 | 4.1:+275742 | None:intergenic |
| CAATAAAGGTGCTGTTCTTA+TGG | 0.252283 | 4.1:-276217 | MS.gene94561:CDS |
| GCGCCGTTGAGCGCCGTTCC+TGG | 0.290623 | 4.1:-276667 | MS.gene94561:CDS |
| ATTCGATGATGATGGTAATA+AGG | 0.312148 | 4.1:-276747 | MS.gene94561:CDS |
| GACAGTGGGTCAGCAGTCTT+TGG | 0.317010 | 4.1:+276246 | None:intergenic |
| GACTTCAAGGTGTCCATATA+AGG | 0.326137 | 4.1:-276160 | MS.gene94561:CDS |
| CGGAAAAGCTCAAGCAAATC+AGG | 0.333826 | 4.1:+275934 | None:intergenic |
| ATCAACAAACTCAATGGATA+TGG | 0.334085 | 4.1:-275802 | MS.gene94561:CDS |
| CCAATGCTTAGGTTGTTCTT+GGG | 0.335891 | 4.1:+275743 | None:intergenic |
| GTGATAGGTCCTGATGAAAA+TGG | 0.346524 | 4.1:-276794 | MS.gene94561:CDS |
| TCACCTGACGTGGTGGTAAC+AGG | 0.357484 | 4.1:+276813 | None:intergenic |
| TTATGGTATGCAGGACTTGC+GGG | 0.371975 | 4.1:-276200 | MS.gene94561:CDS |
| GAAGCTAAGGTGGGGAGAAT+TGG | 0.373757 | 4.1:-276864 | MS.gene94561:CDS |
| GGAAGACGATGGCGAAGATC+TGG | 0.395348 | 4.1:-276840 | MS.gene94561:CDS |
| CCACTGTCTCAATTCAATAA+AGG | 0.396074 | 4.1:-276231 | MS.gene94561:CDS |
| TTGCAACTGATGCTGCTCCT+GGG | 0.402236 | 4.1:-276098 | MS.gene94561:CDS |
| CGTCGGTGCCCGCCTCACTA+TGG | 0.408913 | 4.1:-276615 | MS.gene94561:CDS |
| GCTTCAGCTGCCTCAGCAAA+GGG | 0.410110 | 4.1:-276075 | MS.gene94561:CDS |
| ACGCGCGTTGGCAAGTTTGC+GGG | 0.418864 | 4.1:+276700 | None:intergenic |
| CGCCGTTCCTGGCCTAAGTT+CGG | 0.430777 | 4.1:-276656 | MS.gene94561:CDS |
| GGCTTCAGCTGCCTCAGCAA+AGG | 0.431088 | 4.1:-276076 | MS.gene94561:CDS |
| GACGCGCGTTGGCAAGTTTG+CGG | 0.443758 | 4.1:+276699 | None:intergenic |
| ACTGGCATGAGTAGGGGCTT+TGG | 0.446792 | 4.1:-275865 | MS.gene94561:CDS |
| GCTTTGTGAACTTTGTTAGC+AGG | 0.448198 | 4.1:-275843 | MS.gene94561:CDS |
| TCCTCTCCGCACCAGCTCTC+AGG | 0.449264 | 4.1:+276034 | None:intergenic |
| GGAGCAGCATCAGTTGCAAC+AGG | 0.449540 | 4.1:+276102 | None:intergenic |
| GGGTGGCCCATTCAACTCTC+AGG | 0.454110 | 4.1:+275764 | None:intergenic |
| GCTGAGGCAGCTGAAGCCCC+AGG | 0.456235 | 4.1:+276081 | None:intergenic |
| GAACGATGAGAATTCTGTTC+GGG | 0.459314 | 4.1:-275986 | MS.gene94561:CDS |
| AAGGTGATCATTGGACTTCA+AGG | 0.461829 | 4.1:-276173 | MS.gene94561:CDS |
| TTTCCTGTTACCACCACGTC+AGG | 0.468496 | 4.1:-276816 | MS.gene94561:CDS |
| GGCTGTGCGAGATCCTTATA+TGG | 0.469555 | 4.1:+276147 | None:intergenic |
| AGTCTTTGGATCCTCCTTGT+TGG | 0.470984 | 4.1:+276260 | None:intergenic |
| GCTGGTGCGGAGAGGACTAC+TGG | 0.480564 | 4.1:-276027 | MS.gene94561:CDS |
| TGCAGGACTTGCGGGAAGAA+AGG | 0.492703 | 4.1:-276192 | MS.gene94561:CDS |
| CTGATGAAAATGGAATCAAA+AGG | 0.493183 | 4.1:-276784 | MS.gene94561:CDS |
| CCTTGTGTCCTCCGAGAGGT+TGG | 0.493283 | 4.1:+275960 | None:intergenic |
| GGCGGCAATTCAGTCTGAAC+CGG | 0.495287 | 4.1:-276888 | MS.gene94561:CDS |
| TGCTTAGGTTGTTCTTGGGG+TGG | 0.495372 | 4.1:+275747 | None:intergenic |
| TCTCATCCTGAGAGTTGAAT+GGG | 0.497673 | 4.1:-275770 | MS.gene94561:CDS |
| GCGGGAAGAAAGGTGATCAT+TGG | 0.497842 | 4.1:-276182 | MS.gene94561:CDS |
| GTGCTGTTCTTATGGTATGC+AGG | 0.503047 | 4.1:-276209 | MS.gene94561:CDS |
| CTGAACCGGCGAAGCTAAGG+TGG | 0.503185 | 4.1:-276874 | MS.gene94561:CDS |
| ATCTCATCCTGAGAGTTGAA+TGG | 0.503653 | 4.1:-275771 | MS.gene94561:CDS |
| TCAAAAGACTGGCATGAGTA+GGG | 0.504440 | 4.1:-275872 | MS.gene94561:CDS |
| TTACCACCACGTCAGGTGAT+AGG | 0.508065 | 4.1:-276809 | MS.gene94561:CDS |
| TCTCCCCACCTTAGCTTCGC+CGG | 0.508727 | 4.1:+276869 | None:intergenic |
| GTTGCTATTGATCAAAAGAC+TGG | 0.519323 | 4.1:-275883 | MS.gene94561:CDS |
| CAATGCTTAGGTTGTTCTTG+GGG | 0.520594 | 4.1:+275744 | None:intergenic |
| CTCGAACGCCCCAAACCACT+TGG | 0.521196 | 4.1:-276572 | MS.gene94561:intron |
| AGGGCTATCAACAAACTCAA+TGG | 0.522389 | 4.1:-275808 | MS.gene94561:CDS |
| GAGTACAAATTCGATGATGA+TGG | 0.524262 | 4.1:-276755 | MS.gene94561:CDS |
| TCCGCACCAGCTCTCAGGCT+AGG | 0.528088 | 4.1:+276039 | None:intergenic |
| GGTTTATCAACAAAAGTCTC+AGG | 0.531499 | 4.1:+276123 | None:intergenic |
| TACTGACAGCACCAAAAGGC+CGG | 0.531711 | 4.1:+275914 | None:intergenic |
| CTTATGGTATGCAGGACTTG+CGG | 0.534636 | 4.1:-276201 | MS.gene94561:CDS |
| CTTTGTGAACTTTGTTAGCA+GGG | 0.538694 | 4.1:-275842 | MS.gene94561:CDS |
| GGAACGATGAGAATTCTGTT+CGG | 0.539699 | 4.1:-275987 | MS.gene94561:CDS |
| GCGTTCGAGAAGGATCTCTT+CGG | 0.539858 | 4.1:+276586 | None:intergenic |
| TGCAACTGATGCTGCTCCTG+GGG | 0.541734 | 4.1:-276097 | MS.gene94561:CDS |
| GGCGTCTCCGAACTTAGGCC+AGG | 0.544227 | 4.1:+276649 | None:intergenic |
| GCTAAGGTGGGGAGAATTGG+AGG | 0.546676 | 4.1:-276861 | MS.gene94561:CDS |
| TGATGAAAATGGAATCAAAA+GGG | 0.546960 | 4.1:-276783 | MS.gene94561:CDS |
| GGCAAGTTTGCGGGTTCGAG+TGG | 0.547824 | 4.1:+276709 | None:intergenic |
| AGTCTGAACCGGCGAAGCTA+AGG | 0.552460 | 4.1:-276877 | MS.gene94561:CDS |
| GGCACCGACGTCTTCATGAA+CGG | 0.554768 | 4.1:+276628 | None:intergenic |
| ACCCTACTGACAGCACCAAA+AGG | 0.555974 | 4.1:+275910 | None:intergenic |
| AGGCCAGGAACGGCGCTCAA+CGG | 0.556345 | 4.1:+276664 | None:intergenic |
| GCGTTTGCTGAGACGCGCGT+TGG | 0.556548 | 4.1:+276688 | None:intergenic |
| CCAACCTCTCGGAGGACACA+AGG | 0.558509 | 4.1:-275960 | MS.gene94561:CDS |
| GGTGGAAACCATAGTGAGGC+GGG | 0.568445 | 4.1:+276607 | None:intergenic |
| GTGGTTTGGGGCGTTCGAGA+AGG | 0.575414 | 4.1:+276576 | None:intergenic |
| CTCCGAACTTAGGCCAGGAA+CGG | 0.576631 | 4.1:+276654 | None:intergenic |
| ATCAAAAGACTGGCATGAGT+AGG | 0.579916 | 4.1:-275873 | MS.gene94561:CDS |
| TCCTAGCCTGAGAGCTGGTG+CGG | 0.588822 | 4.1:-276040 | MS.gene94561:CDS |
| TGAACGGCGTCTCCGAACTT+AGG | 0.601313 | 4.1:+276644 | None:intergenic |
| CTTTATTGAATTGAGACAGT+GGG | 0.603664 | 4.1:+276232 | None:intergenic |
| CTGGCTCTGACATGAGGCGG+AGG | 0.610847 | 4.1:-276008 | MS.gene94561:CDS |
| GTACCTCCTAGCCTGAGAGC+TGG | 0.611149 | 4.1:-276045 | MS.gene94561:CDS |
| CAAAAGACTGGCATGAGTAG+GGG | 0.615375 | 4.1:-275871 | MS.gene94561:CDS |
| TGAACCGGCGAAGCTAAGGT+GGG | 0.616663 | 4.1:-276873 | MS.gene94561:CDS |
| GCCTGAGAGCTGGTGCGGAG+AGG | 0.623849 | 4.1:-276035 | MS.gene94561:CDS |
| TACATATGCACCCTTTGCTG+AGG | 0.623928 | 4.1:+276065 | None:intergenic |
| TAGCAGGGAAGATGCTCAGA+GGG | 0.624825 | 4.1:-275827 | MS.gene94561:CDS |
| TTCGAGAAGGATCTCTTCGG+TGG | 0.624825 | 4.1:+276589 | None:intergenic |
| CAACCTCTCGGAGGACACAA+GGG | 0.627480 | 4.1:-275959 | MS.gene94561:CDS |
| CGGTGGAAACCATAGTGAGG+CGG | 0.629968 | 4.1:+276606 | None:intergenic |
| GGACTACTGGCTCTGACATG+AGG | 0.632778 | 4.1:-276014 | MS.gene94561:CDS |
| TGTTCGGGTAACCAACCTCT+CGG | 0.633411 | 4.1:-275971 | MS.gene94561:CDS |
| AATCTAATCAGACATGGCGG+CGG | 0.647531 | 4.1:-276906 | None:intergenic |
| GCACCAGCTCTCAGGCTAGG+AGG | 0.652161 | 4.1:+276042 | None:intergenic |
| GAACCGGCGAAGCTAAGGTG+GGG | 0.653069 | 4.1:-276872 | MS.gene94561:CDS |
| CCTTTATTGAATTGAGACAG+TGG | 0.657041 | 4.1:+276231 | None:intergenic |
| CTACTGGCTCTGACATGAGG+CGG | 0.663022 | 4.1:-276011 | MS.gene94561:CDS |
| GCTCCCTTGTGTCCTCCGAG+AGG | 0.679337 | 4.1:+275956 | None:intergenic |
| GGACCTATCACCTGACGTGG+TGG | 0.679711 | 4.1:+276806 | None:intergenic |
| TTATCAACAAAAGTCTCAGG+CGG | 0.681859 | 4.1:+276126 | None:intergenic |
| TTAGCAGGGAAGATGCTCAG+AGG | 0.686366 | 4.1:-275828 | MS.gene94561:CDS |
| ATCAACAACAGGTTCCAACA+AGG | 0.686562 | 4.1:-276274 | MS.gene94561:intron |
| GGAGAATTGGAGGAAGACGA+TGG | 0.696314 | 4.1:-276851 | MS.gene94561:CDS |
| TCAGGACCTATCACCTGACG+TGG | 0.706707 | 4.1:+276803 | None:intergenic |
| AACAACAGGTTCCAACAAGG+AGG | 0.706807 | 4.1:-276271 | MS.gene94561:intron |
| CTTCGGTGGAAACCATAGTG+AGG | 0.709928 | 4.1:+276603 | None:intergenic |
| TCGGGTAACCAACCTCTCGG+AGG | 0.730211 | 4.1:-275968 | MS.gene94561:CDS |
| GACGCCGTTCATGAAGACGT+CGG | 0.745318 | 4.1:-276632 | MS.gene94561:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ACTTTAGATGATGAATTACT+GGG | - | chr4.1:276239-276258 | MS.gene94561:CDS | 25.0% |
| ! | TACTTTAGATGATGAATTAC+TGG | - | chr4.1:276238-276257 | MS.gene94561:CDS | 25.0% |
| ! | TGATGAAAATGGAATCAAAA+GGG | - | chr4.1:275860-275879 | MS.gene94561:CDS | 25.0% |
| !! | GTAATTCATCATCTAAAGTA+AGG | + | chr4.1:276238-276257 | None:intergenic | 25.0% |
| ATCAACAAACTCAATGGATA+TGG | - | chr4.1:276841-276860 | MS.gene94561:CDS | 30.0% | |
| CTGATGAAAATGGAATCAAA+AGG | - | chr4.1:275859-275878 | MS.gene94561:CDS | 30.0% | |
| CTTTATTGAATTGAGACAGT+GGG | + | chr4.1:276414-276433 | None:intergenic | 30.0% | |
| ! | TTCATCATCTAAAGTAAGGA+AGG | + | chr4.1:276234-276253 | None:intergenic | 30.0% |
| !! | ATTCGATGATGATGGTAATA+AGG | - | chr4.1:275896-275915 | MS.gene94561:CDS | 30.0% |
| !! | CTTTTGATTCCATTTTCATC+AGG | + | chr4.1:275861-275880 | None:intergenic | 30.0% |
| !! | TAAAGAGAAAAAGTACCAAG+TGG | + | chr4.1:276089-276108 | None:intergenic | 30.0% |
| AACCTAGTCTAGTCTATTGT+AGG | - | chr4.1:276315-276334 | MS.gene94561:intron | 35.0% | |
| ATCCTACAATAGACTAGACT+AGG | + | chr4.1:276320-276339 | None:intergenic | 35.0% | |
| CACAATCACACAAGAATGTT+CGG | - | chr4.1:276189-276208 | MS.gene94561:CDS | 35.0% | |
| CCACTGTCTCAATTCAATAA+AGG | - | chr4.1:276412-276431 | MS.gene94561:intron | 35.0% | |
| CCTTTATTGAATTGAGACAG+TGG | + | chr4.1:276415-276434 | None:intergenic | 35.0% | |
| CTTTGTGAACTTTGTTAGCA+GGG | - | chr4.1:276801-276820 | MS.gene94561:CDS | 35.0% | |
| GAGTACAAATTCGATGATGA+TGG | - | chr4.1:275888-275907 | MS.gene94561:CDS | 35.0% | |
| GGTTTATCAACAAAAGTCTC+AGG | + | chr4.1:276523-276542 | None:intergenic | 35.0% | |
| TCATGATCTGTATCAACAAC+AGG | - | chr4.1:276358-276377 | MS.gene94561:intron | 35.0% | |
| TTATCAACAAAAGTCTCAGG+CGG | + | chr4.1:276520-276539 | None:intergenic | 35.0% | |
| ! | GTTGCTATTGATCAAAAGAC+TGG | - | chr4.1:276760-276779 | MS.gene94561:CDS | 35.0% |
| !! | AAAAAGTACCAAGTGGTTTG+GGG | + | chr4.1:276082-276101 | None:intergenic | 35.0% |
| !! | AGAAAAAGTACCAAGTGGTT+TGG | + | chr4.1:276084-276103 | None:intergenic | 35.0% |
| !! | CAATAAAGGTGCTGTTCTTA+TGG | - | chr4.1:276426-276445 | MS.gene94561:intron | 35.0% |
| !! | GAAAAAGTACCAAGTGGTTT+GGG | + | chr4.1:276083-276102 | None:intergenic | 35.0% |
| AAGGTGATCATTGGACTTCA+AGG | - | chr4.1:276470-276489 | MS.gene94561:intron | 40.0% | |
| AGGGCTATCAACAAACTCAA+TGG | - | chr4.1:276835-276854 | MS.gene94561:CDS | 40.0% | |
| ATCAAAAGACTGGCATGAGT+AGG | - | chr4.1:276770-276789 | MS.gene94561:CDS | 40.0% | |
| ATCAACAACAGGTTCCAACA+AGG | - | chr4.1:276369-276388 | MS.gene94561:intron | 40.0% | |
| ATCTCATCCTGAGAGTTGAA+TGG | - | chr4.1:276872-276891 | MS.gene94561:CDS | 40.0% | |
| GAACGATGAGAATTCTGTTC+GGG | - | chr4.1:276657-276676 | MS.gene94561:CDS | 40.0% | |
| GCTTTGTGAACTTTGTTAGC+AGG | - | chr4.1:276800-276819 | MS.gene94561:CDS | 40.0% | |
| GGAACGATGAGAATTCTGTT+CGG | - | chr4.1:276656-276675 | MS.gene94561:CDS | 40.0% | |
| GTGATAGGTCCTGATGAAAA+TGG | - | chr4.1:275849-275868 | MS.gene94561:CDS | 40.0% | |
| TCAAAAGACTGGCATGAGTA+GGG | - | chr4.1:276771-276790 | MS.gene94561:CDS | 40.0% | |
| TCTCATCCTGAGAGTTGAAT+GGG | - | chr4.1:276873-276892 | MS.gene94561:CDS | 40.0% | |
| ! | GACTTCAAGGTGTCCATATA+AGG | - | chr4.1:276483-276502 | MS.gene94561:intron | 40.0% |
| !!! | CTGATTTGCTTGAGCTTTTC+CGG | - | chr4.1:276710-276729 | MS.gene94561:CDS | 40.0% |
| AACAACAGGTTCCAACAAGG+AGG | - | chr4.1:276372-276391 | MS.gene94561:intron | 45.0% | |
| ACTAGTTATCTAGCGACCAG+GGG | - | chr4.1:276161-276180 | MS.gene94561:CDS | 45.0% | |
| AGTCTTTGGATCCTCCTTGT+TGG | + | chr4.1:276386-276405 | None:intergenic | 45.0% | |
| CAAAAGACTGGCATGAGTAG+GGG | - | chr4.1:276772-276791 | MS.gene94561:CDS | 45.0% | |
| CGGAAAAGCTCAAGCAAATC+AGG | + | chr4.1:276712-276731 | None:intergenic | 45.0% | |
| CTTATGGTATGCAGGACTTG+CGG | - | chr4.1:276442-276461 | MS.gene94561:intron | 45.0% | |
| GTGTGATTGTGTAAATCCCC+TGG | + | chr4.1:276180-276199 | None:intergenic | 45.0% | |
| TACATATGCACCCTTTGCTG+AGG | + | chr4.1:276581-276600 | None:intergenic | 45.0% | |
| TTATGGTATGCAGGACTTGC+GGG | - | chr4.1:276443-276462 | MS.gene94561:intron | 45.0% | |
| ! | AGACTAGTTATCTAGCGACC+AGG | - | chr4.1:276159-276178 | MS.gene94561:CDS | 45.0% |
| ! | GACTAGTTATCTAGCGACCA+GGG | - | chr4.1:276160-276179 | MS.gene94561:CDS | 45.0% |
| ! | GTGCTGTTCTTATGGTATGC+AGG | - | chr4.1:276434-276453 | MS.gene94561:intron | 45.0% |
| ACCCTACTGACAGCACCAAA+AGG | + | chr4.1:276736-276755 | None:intergenic | 50.0% | |
| CTTCGGTGGAAACCATAGTG+AGG | + | chr4.1:276043-276062 | None:intergenic | 50.0% | |
| GAAGCTAAGGTGGGGAGAAT+TGG | - | chr4.1:275779-275798 | MS.gene94561:CDS | 50.0% | |
| GCGGGAAGAAAGGTGATCAT+TGG | - | chr4.1:276461-276480 | MS.gene94561:intron | 50.0% | |
| GCGTTCGAGAAGGATCTCTT+CGG | + | chr4.1:276060-276079 | None:intergenic | 50.0% | |
| GGAGAATTGGAGGAAGACGA+TGG | - | chr4.1:275792-275811 | MS.gene94561:CDS | 50.0% | |
| GGCTGTGCGAGATCCTTATA+TGG | + | chr4.1:276499-276518 | None:intergenic | 50.0% | |
| TACTGACAGCACCAAAAGGC+CGG | + | chr4.1:276732-276751 | None:intergenic | 50.0% | |
| TAGCAGGGAAGATGCTCAGA+GGG | - | chr4.1:276816-276835 | MS.gene94561:CDS | 50.0% | |
| TGTTCGGGTAACCAACCTCT+CGG | - | chr4.1:276672-276691 | MS.gene94561:CDS | 50.0% | |
| TTACCACCACGTCAGGTGAT+AGG | - | chr4.1:275834-275853 | MS.gene94561:CDS | 50.0% | |
| TTAGCAGGGAAGATGCTCAG+AGG | - | chr4.1:276815-276834 | MS.gene94561:CDS | 50.0% | |
| TTCGAGAAGGATCTCTTCGG+TGG | + | chr4.1:276057-276076 | None:intergenic | 50.0% | |
| TTGCAACTGATGCTGCTCCT+GGG | - | chr4.1:276545-276564 | MS.gene94561:intron | 50.0% | |
| TTTCCTGTTACCACCACGTC+AGG | - | chr4.1:275827-275846 | MS.gene94561:CDS | 50.0% | |
| ! | CTTGAGCTTTTCCGGCCTTT+TGG | - | chr4.1:276718-276737 | MS.gene94561:CDS | 50.0% |
| !!! | GCCTTTTGGTGCTGTCAGTA+GGG | - | chr4.1:276732-276751 | MS.gene94561:CDS | 50.0% |
| ACTGGCATGAGTAGGGGCTT+TGG | - | chr4.1:276778-276797 | MS.gene94561:CDS | 55.0% | |
| AGTCTGAACCGGCGAAGCTA+AGG | - | chr4.1:275766-275785 | MS.gene94561:CDS | 55.0% | |
| CAACCTCTCGGAGGACACAA+GGG | - | chr4.1:276684-276703 | MS.gene94561:CDS | 55.0% | |
| CGGTGGAAACCATAGTGAGG+CGG | + | chr4.1:276040-276059 | None:intergenic | 55.0% | |
| CTCCGAACTTAGGCCAGGAA+CGG | + | chr4.1:275992-276011 | None:intergenic | 55.0% | |
| GACAGTGGGTCAGCAGTCTT+TGG | + | chr4.1:276400-276419 | None:intergenic | 55.0% | |
| GACGCCGTTCATGAAGACGT+CGG | - | chr4.1:276011-276030 | MS.gene94561:CDS | 55.0% | |
| GCTAAGGTGGGGAGAATTGG+AGG | - | chr4.1:275782-275801 | MS.gene94561:CDS | 55.0% | |
| GCTTCAGCTGCCTCAGCAAA+GGG | - | chr4.1:276568-276587 | MS.gene94561:intron | 55.0% | |
| GGAAGACGATGGCGAAGATC+TGG | - | chr4.1:275803-275822 | MS.gene94561:CDS | 55.0% | |
| GGAGCAGCATCAGTTGCAAC+AGG | + | chr4.1:276544-276563 | None:intergenic | 55.0% | |
| GGCGGCAATTCAGTCTGAAC+CGG | - | chr4.1:275755-275774 | MS.gene94561:CDS | 55.0% | |
| GGTGGAAACCATAGTGAGGC+GGG | + | chr4.1:276039-276058 | None:intergenic | 55.0% | |
| GTTGCAACTGATGCTGCTCC+TGG | - | chr4.1:276544-276563 | MS.gene94561:intron | 55.0% | |
| TCACCTGACGTGGTGGTAAC+AGG | + | chr4.1:275833-275852 | None:intergenic | 55.0% | |
| TCAGGACCTATCACCTGACG+TGG | + | chr4.1:275843-275862 | None:intergenic | 55.0% | |
| TGAACCGGCGAAGCTAAGGT+GGG | - | chr4.1:275770-275789 | MS.gene94561:CDS | 55.0% | |
| TGAACGGCGTCTCCGAACTT+AGG | + | chr4.1:276002-276021 | None:intergenic | 55.0% | |
| TGCAACTGATGCTGCTCCTG+GGG | - | chr4.1:276546-276565 | MS.gene94561:intron | 55.0% | |
| TGCAGGACTTGCGGGAAGAA+AGG | - | chr4.1:276451-276470 | MS.gene94561:intron | 55.0% | |
| !! | CTACTGGCTCTGACATGAGG+CGG | - | chr4.1:276632-276651 | MS.gene94561:CDS | 55.0% |
| !! | GGACTACTGGCTCTGACATG+AGG | - | chr4.1:276629-276648 | MS.gene94561:CDS | 55.0% |
| !! | GGCACCGACGTCTTCATGAA+CGG | + | chr4.1:276018-276037 | None:intergenic | 55.0% |
| !!! | GGCCTTTTGGTGCTGTCAGT+AGG | - | chr4.1:276731-276750 | MS.gene94561:CDS | 55.0% |
| CCAACCTCTCGGAGGACACA+AGG | - | chr4.1:276683-276702 | MS.gene94561:CDS | 60.0% | |
| CCTTGTGTCCTCCGAGAGGT+TGG | + | chr4.1:276686-276705 | None:intergenic | 60.0% | |
| CGCCGTTCCTGGCCTAAGTT+CGG | - | chr4.1:275987-276006 | MS.gene94561:CDS | 60.0% | |
| CTCGAACGCCCCAAACCACT+TGG | - | chr4.1:276071-276090 | MS.gene94561:CDS | 60.0% | |
| CTGAACCGGCGAAGCTAAGG+TGG | - | chr4.1:275769-275788 | MS.gene94561:CDS | 60.0% | |
| GAACCGGCGAAGCTAAGGTG+GGG | - | chr4.1:275771-275790 | MS.gene94561:CDS | 60.0% | |
| GGACCTATCACCTGACGTGG+TGG | + | chr4.1:275840-275859 | None:intergenic | 60.0% | |
| GGCAAGTTTGCGGGTTCGAG+TGG | + | chr4.1:275937-275956 | None:intergenic | 60.0% | |
| GGCTTCAGCTGCCTCAGCAA+AGG | - | chr4.1:276567-276586 | MS.gene94561:intron | 60.0% | |
| GGGTGGCCCATTCAACTCTC+AGG | + | chr4.1:276882-276901 | None:intergenic | 60.0% | |
| GTACCTCCTAGCCTGAGAGC+TGG | - | chr4.1:276598-276617 | MS.gene94561:CDS | 60.0% | |
| TCCTAGCCTGAGAGCTGGTG+CGG | - | chr4.1:276603-276622 | MS.gene94561:CDS | 60.0% | |
| TCGGGTAACCAACCTCTCGG+AGG | - | chr4.1:276675-276694 | MS.gene94561:CDS | 60.0% | |
| TCTCCCCACCTTAGCTTCGC+CGG | + | chr4.1:275777-275796 | None:intergenic | 60.0% | |
| ! | ACGCGCGTTGGCAAGTTTGC+GGG | + | chr4.1:275946-275965 | None:intergenic | 60.0% |
| ! | GACGCGCGTTGGCAAGTTTG+CGG | + | chr4.1:275947-275966 | None:intergenic | 60.0% |
| ! | GTGGTTTGGGGCGTTCGAGA+AGG | + | chr4.1:276070-276089 | None:intergenic | 60.0% |
| AGGCCAGGAACGGCGCTCAA+CGG | + | chr4.1:275982-276001 | None:intergenic | 65.0% | |
| GCACCAGCTCTCAGGCTAGG+AGG | + | chr4.1:276604-276623 | None:intergenic | 65.0% | |
| GCTCCCTTGTGTCCTCCGAG+AGG | + | chr4.1:276690-276709 | None:intergenic | 65.0% | |
| GCTGGTGCGGAGAGGACTAC+TGG | - | chr4.1:276616-276635 | MS.gene94561:CDS | 65.0% | |
| GGCGTCTCCGAACTTAGGCC+AGG | + | chr4.1:275997-276016 | None:intergenic | 65.0% | |
| TCCGCACCAGCTCTCAGGCT+AGG | + | chr4.1:276607-276626 | None:intergenic | 65.0% | |
| TCCTCTCCGCACCAGCTCTC+AGG | + | chr4.1:276612-276631 | None:intergenic | 65.0% | |
| ! | GCGTTTGCTGAGACGCGCGT+TGG | + | chr4.1:275958-275977 | None:intergenic | 65.0% |
| !! | CTGGCTCTGACATGAGGCGG+AGG | - | chr4.1:276635-276654 | MS.gene94561:CDS | 65.0% |
| GCCTGAGAGCTGGTGCGGAG+AGG | - | chr4.1:276608-276627 | MS.gene94561:CDS | 70.0% | |
| GCTGAGGCAGCTGAAGCCCC+AGG | + | chr4.1:276565-276584 | None:intergenic | 70.0% | |
| ! | CGTCGGTGCCCGCCTCACTA+TGG | - | chr4.1:276028-276047 | MS.gene94561:CDS | 70.0% |
| ! | GCGCCGTTGAGCGCCGTTCC+TGG | - | chr4.1:275976-275995 | MS.gene94561:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 275750 | 276915 | 275750 | ID=MS.gene94561 |
| chr4.1 | mRNA | 275750 | 276915 | 275750 | ID=MS.gene94561.t1;Parent=MS.gene94561 |
| chr4.1 | exon | 276573 | 276915 | 276573 | ID=MS.gene94561.t1.exon1;Parent=MS.gene94561.t1 |
| chr4.1 | CDS | 276573 | 276915 | 276573 | ID=cds.MS.gene94561.t1;Parent=MS.gene94561.t1 |
| chr4.1 | exon | 275750 | 276285 | 275750 | ID=MS.gene94561.t1.exon2;Parent=MS.gene94561.t1 |
| chr4.1 | CDS | 275750 | 276285 | 275750 | ID=cds.MS.gene94561.t1;Parent=MS.gene94561.t1 |
| Gene Sequence |
| Protein sequence |
